Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056680 | G7I570 | 98.430 | 446 | 7 | 0 | 1 | 446 | 1 | 446 | 0.0 | 896 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007780 | Msa0056680 | 0.809836 | 1.553737e-50 | -8.615850e-47 |
| Msa0026120 | Msa0056680 | 0.803291 | 3.739413e-49 | -8.615850e-47 |
| Msa0056550 | Msa0056680 | 0.881362 | 2.555820e-70 | -8.615850e-47 |
| Msa0056680 | Msa0056720 | 0.879742 | 9.719932e-70 | -8.615850e-47 |
| Msa0056680 | Msa0169960 | 0.800686 | 1.282876e-48 | -8.615850e-47 |
| Msa0056680 | Msa0228090 | 0.801962 | 7.027907e-49 | -8.615850e-47 |
| Msa0056680 | Msa0228180 | 0.802093 | 6.606449e-49 | -8.615850e-47 |
| Msa0056680 | Msa0272420 | 0.804946 | 1.692065e-49 | -8.615850e-47 |
| Msa0056680 | Msa0389050 | 0.817598 | 3.035660e-52 | -8.615850e-47 |
| Msa0056680 | Msa0413740 | 0.814383 | 1.584704e-51 | -8.615850e-47 |
| Msa0056680 | Msa0423600 | 0.810444 | 1.149449e-50 | -8.615850e-47 |
| Msa0056680 | Msa0440110 | 0.814851 | 1.247811e-51 | -8.615850e-47 |
| Msa0056680 | Msa0459120 | 0.801130 | 1.040965e-48 | -8.615850e-47 |
| Msa0056680 | Msa0498830 | 0.818658 | 1.747208e-52 | -8.615850e-47 |
| Msa0056680 | Msa0505390 | 0.815851 | 7.477912e-52 | -8.615850e-47 |
| Msa0056680 | Msa0505660 | 0.810462 | 1.138906e-50 | -8.615850e-47 |
| Msa0056680 | Msa0599250 | 0.813029 | 3.146716e-51 | -8.615850e-47 |
| Msa0056680 | Msa0660880 | -0.813727 | 2.210690e-51 | -8.615850e-47 |
| Msa0056680 | Msa0678240 | 0.802536 | 5.355843e-49 | -8.615850e-47 |
| Msa0056680 | Msa0756480 | 0.809552 | 1.788900e-50 | -8.615850e-47 |
| Msa0056680 | Msa0799290 | -0.813134 | 2.984849e-51 | -8.615850e-47 |
| Msa0056680 | Msa0819740 | 0.815225 | 1.031199e-51 | -8.615850e-47 |
| Msa0056680 | Msa0837510 | -0.812582 | 3.942431e-51 | -8.615850e-47 |
| Msa0056680 | Msa0839730 | 0.808342 | 3.246657e-50 | -8.615850e-47 |
| Msa0056680 | Msa0883410 | 0.817358 | 3.438053e-52 | -8.615850e-47 |
| Msa0056680 | Msa0887000 | 0.832528 | 8.980590e-56 | -8.615850e-47 |
| Msa0056680 | Msa0951720 | 0.801944 | 7.088351e-49 | -8.615850e-47 |
| Msa0056680 | Msa0984840 | 0.824743 | 6.841645e-54 | -8.615850e-47 |
| Msa0056680 | Msa1032350 | 0.820611 | 6.261012e-53 | -8.615850e-47 |
| Msa0056680 | Msa1033670 | 0.802782 | 4.764710e-49 | -8.615850e-47 |
| Msa0056680 | Msa1038820 | 0.801343 | 9.418122e-49 | -8.615850e-47 |
| Msa0056680 | Msa1072350 | 0.800508 | 1.394501e-48 | -8.615850e-47 |
| Msa0056680 | Msa1081700 | 0.807628 | 4.605707e-50 | -8.615850e-47 |
| Msa0056680 | Msa1117830 | 0.804359 | 2.243159e-49 | -8.615850e-47 |
| Msa0056680 | Msa1118140 | 0.801671 | 8.065641e-49 | -8.615850e-47 |
| Msa0056680 | Msa1166370 | 0.803517 | 3.356317e-49 | -8.615850e-47 |
| Msa0056680 | Msa1191390 | 0.836884 | 7.201652e-57 | -8.615850e-47 |
| Msa0056680 | Msa1212740 | 0.800089 | 1.697130e-48 | -8.615850e-47 |
| Msa0056680 | Msa1231520 | 0.822990 | 1.761914e-53 | -8.615850e-47 |
| Msa0056680 | Msa1274310 | 0.803787 | 2.950811e-49 | -8.615850e-47 |
| Msa0056680 | Msa1279870 | 0.803456 | 3.456598e-49 | -8.615850e-47 |
| Msa0056680 | Msa1287160 | 0.804840 | 1.780547e-49 | -8.615850e-47 |
| Msa0056680 | Msa1287340 | 0.800721 | 1.261730e-48 | -8.615850e-47 |
| Msa0056680 | Msa1287640 | 0.810529 | 1.101785e-50 | -8.615850e-47 |
| Msa0056680 | Msa1304850 | 0.823478 | 1.355759e-53 | -8.615850e-47 |
| Msa0056680 | Msa1326000 | 0.823836 | 1.117981e-53 | -8.615850e-47 |
| Msa0056680 | Msa1333430 | 0.807589 | 4.695848e-50 | -8.615850e-47 |
| Msa0056680 | Msa1386020 | 0.805734 | 1.157008e-49 | -8.615850e-47 |
| Msa0056680 | Msa1397540 | 0.815167 | 1.062023e-51 | -8.615850e-47 |
| Msa0056680 | Msa1405470 | 0.808798 | 2.594354e-50 | -8.615850e-47 |
| Msa0056680 | Msa1428440 | 0.802997 | 4.302117e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056680 | MtrunA17_Chr1g0147671 | 98.430 | 446 | 7 | 0 | 1 | 446 | 1 | 446 | 0.0 | 896 |
| Msa0056680 | MtrunA17_Chr3g0099911 | 32.667 | 450 | 281 | 7 | 13 | 443 | 1 | 447 | 5.56e-79 | 252 |
| Msa0056680 | MtrunA17_Chr2g0289391 | 33.005 | 406 | 255 | 3 | 54 | 443 | 25 | 429 | 9.72e-72 | 233 |
| Msa0056680 | MtrunA17_Chr8g0377091 | 29.157 | 415 | 270 | 6 | 46 | 444 | 43 | 449 | 3.78e-57 | 195 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056680 | AT2G21080.1 | 60.291 | 413 | 137 | 10 | 40 | 445 | 21 | 413 | 6.63e-162 | 463 |
| Msa0056680 | AT3G20300.1 | 35.225 | 423 | 252 | 4 | 41 | 443 | 29 | 449 | 5.94e-84 | 265 |
| Msa0056680 | AT1G50630.1 | 35.714 | 406 | 228 | 6 | 53 | 429 | 35 | 436 | 4.12e-79 | 253 |
| Msa0056680 | AT1G50630.2 | 37.748 | 302 | 186 | 2 | 53 | 354 | 35 | 334 | 7.06e-66 | 218 |
| Msa0056680 | AT4G03820.1 | 31.332 | 383 | 243 | 4 | 68 | 431 | 40 | 421 | 3.11e-58 | 197 |
| Msa0056680 | AT4G22270.1 | 31.552 | 393 | 252 | 3 | 68 | 444 | 43 | 434 | 7.36e-58 | 197 |
| Msa0056680 | AT4G03820.2 | 31.332 | 383 | 243 | 4 | 68 | 431 | 40 | 421 | 7.54e-58 | 197 |
| Msa0056680 | AT4G03820.3 | 31.332 | 383 | 243 | 4 | 68 | 431 | 89 | 470 | 7.78e-58 | 198 |
| Msa0056680 | AT4G22270.2 | 31.316 | 380 | 244 | 3 | 68 | 431 | 43 | 421 | 1.55e-57 | 196 |
| Msa0056680 | AT4G03820.4 | 31.332 | 383 | 243 | 4 | 68 | 431 | 89 | 470 | 2.13e-57 | 197 |
| Msa0056680 | AT1G67570.1 | 30.500 | 400 | 248 | 6 | 66 | 444 | 62 | 452 | 6.56e-56 | 192 |
| Msa0056680 | AT1G67570.2 | 33.065 | 248 | 159 | 2 | 117 | 364 | 112 | 352 | 1.21e-40 | 150 |
Find 79 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCAAGAGCACACCATTTA+AGG | 0.198157 | 1_2:+12320426 | None:intergenic |
| AGAAGCAGGTGTTATATTTA+AGG | 0.203283 | 1_2:-12319453 | Msa0056680:CDS |
| GGCTTCTTCTTGTGCATCTT+AGG | 0.235318 | 1_2:-12319088 | Msa0056680:CDS |
| GAGAAGACATTCTTCAATTC+TGG | 0.252926 | 1_2:-12319302 | Msa0056680:CDS |
| GGGTTCTCTATTGCTAGTTT+TGG | 0.258616 | 1_2:-12319336 | Msa0056680:CDS |
| ACTTTCGGATATGCCTTAAA+TGG | 0.275331 | 1_2:-12320439 | Msa0056680:CDS |
| AAGCAGATACTTGAACAAAT+AGG | 0.282476 | 1_2:+12320327 | None:intergenic |
| TGAGGATTAGAAGGCAATTA+TGG | 0.287173 | 1_2:-12319424 | Msa0056680:CDS |
| AGAGGAATTATCAATGTTAA+TGG | 0.296185 | 1_2:+12320574 | None:intergenic |
| TACAATGAGTGTTAGTCAAT+TGG | 0.314349 | 1_2:-12319357 | Msa0056680:CDS |
| TTGTATTTATGTTACTTTCA+TGG | 0.331455 | 1_2:-12319586 | Msa0056680:CDS |
| TTTCAGACTAGACAATCTTT+AGG | 0.339756 | 1_2:-12318875 | Msa0056680:intron |
| GTCAGAGAAAGATACTCTTT+TGG | 0.360397 | 1_2:+12320550 | None:intergenic |
| TCCTTGGTTGATTCTGTTGA+AGG | 0.377806 | 1_2:+12320602 | None:intergenic |
| AATGTTAATGGTTGTGTCCT+TGG | 0.382680 | 1_2:+12320586 | None:intergenic |
| CTTCAAATATTGAGATTTGA+AGG | 0.390973 | 1_2:-12319506 | Msa0056680:CDS |
| CTAAGAATAGAAGTTGTCTT+AGG | 0.395325 | 1_2:+12319801 | None:intergenic |
| AGGAACATGTGAGGATTAGA+AGG | 0.398671 | 1_2:-12319433 | Msa0056680:CDS |
| TTGAATTCTCCATAGTGCTT+TGG | 0.398782 | 1_2:-12318349 | Msa0056680:CDS |
| CTTTCATGGCTGTACAGAAC+TGG | 0.398954 | 1_2:-12319572 | Msa0056680:CDS |
| ATGATGGCAAGTGCAGATTC+AGG | 0.410877 | 1_2:+12320257 | None:intergenic |
| AGCAGATACTTGAACAAATA+GGG | 0.411563 | 1_2:+12320328 | None:intergenic |
| TTGATGAACTAAGAAACTTT+CGG | 0.420225 | 1_2:-12320454 | Msa0056680:CDS |
| ACAAACACAATTGAGTGTAT+TGG | 0.427450 | 1_2:+12319605 | None:intergenic |
| ACAATGAGTGTTAGTCAATT+GGG | 0.429137 | 1_2:-12319356 | Msa0056680:CDS |
| ACAAGCTTGTTCAAGGAGAT+AGG | 0.430827 | 1_2:+12320287 | None:intergenic |
| GTGTATCATTATATCTCATA+TGG | 0.437531 | 1_2:-12318239 | Msa0056680:three_prime_UTR |
| AGTGCTTTGGATTCTGAGTA+AGG | 0.442534 | 1_2:-12318336 | Msa0056680:CDS |
| TCTTAGTTCATCAAAGATCA+TGG | 0.445556 | 1_2:+12320463 | None:intergenic |
| CTCTCTACCGTTTCTTCCGA+AGG | 0.449304 | 1_2:-12320223 | Msa0056680:intron |
| ACTCAGAATCCAAAGCACTA+TGG | 0.455666 | 1_2:+12318340 | None:intergenic |
| GGAAATCCAGCACTAAGGTT+TGG | 0.455769 | 1_2:+12319626 | None:intergenic |
| TGTGTTGTTGCTGTTGCTGT+TGG | 0.458307 | 1_2:+12320528 | None:intergenic |
| CCCATGGTTGTGTTGTAGAT+AGG | 0.469534 | 1_2:+12318430 | None:intergenic |
| CAAATCTCAATATTTGAAGC+TGG | 0.469941 | 1_2:+12319510 | None:intergenic |
| ATATAATGATACACATTCCT+TGG | 0.471917 | 1_2:+12318248 | None:intergenic |
| CATTCCTTGGCTCATATACA+AGG | 0.472347 | 1_2:+12318261 | None:intergenic |
| GAGAGACTATAGAAGTAAGA+AGG | 0.481703 | 1_2:+12320716 | None:intergenic |
| GAAACGGTAGAGAGTGAAGA+AGG | 0.481723 | 1_2:+12320232 | None:intergenic |
| TTGTTTCAATTGCAACAAGA+TGG | 0.484621 | 1_2:-12319033 | Msa0056680:CDS |
| TATTTGAACAAGCTTGTTCA+AGG | 0.484907 | 1_2:+12320280 | None:intergenic |
| GAGAGTGAAGAAGGAAATGA+TGG | 0.494904 | 1_2:+12320241 | None:intergenic |
| TCAGCACCAAACCTTAGTGC+TGG | 0.495418 | 1_2:-12319632 | Msa0056680:CDS |
| AATTATGGATTATAAGTCAT+AGG | 0.501167 | 1_2:-12319409 | Msa0056680:CDS |
| ATCATTATATCTCATATGGC+TGG | 0.514071 | 1_2:-12318235 | Msa0056680:three_prime_UTR |
| CTTGATCACTCATCTTGTGT+TGG | 0.518508 | 1_2:-12320410 | Msa0056680:CDS |
| TAAAGATTGTCTAGTCTGAA+AGG | 0.525351 | 1_2:+12318877 | None:intergenic |
| GAAGGGTGTGGATCAGAAGC+AGG | 0.525748 | 1_2:-12319467 | Msa0056680:CDS |
| ATCAGAATCACTACTATCAC+TGG | 0.527982 | 1_2:+12318943 | None:intergenic |
| CCTATCTACAACACAACCAT+GGG | 0.534196 | 1_2:-12318430 | Msa0056680:CDS |
| AAGGAGATAGGATCAACTTC+AGG | 0.540232 | 1_2:+12320299 | None:intergenic |
| AGAGAGGAACAATGAAAGTG+AGG | 0.542144 | 1_2:+12320357 | None:intergenic |
| CTTCAATTCTGGTGACCTTG+TGG | 0.547529 | 1_2:-12319291 | Msa0056680:intron |
| TTTGGTACCTTCGGAAGAAA+CGG | 0.549992 | 1_2:+12320216 | None:intergenic |
| AAAATCACACATAGAGCTCA+AGG | 0.557605 | 1_2:-12319058 | Msa0056680:CDS |
| GCAAGTTCTACAAAGAAAGA+AGG | 0.565294 | 1_2:+12319689 | None:intergenic |
| GTTCTACAAAGAAAGAAGGT+AGG | 0.566351 | 1_2:+12319693 | None:intergenic |
| ATTCTTTATAATCTGTTGTG+TGG | 0.569662 | 1_2:-12319381 | Msa0056680:CDS |
| AATGAAAGTGAGGAAGATGA+AGG | 0.573099 | 1_2:+12320367 | None:intergenic |
| GTATTGGAAATCCAGCACTA+AGG | 0.581099 | 1_2:+12319621 | None:intergenic |
| ATTCAAGTCTAGAAAAGTGA+AGG | 0.587761 | 1_2:-12318293 | Msa0056680:three_prime_UTR |
| GAATGCTTTCTCTAGCTCGC+GGG | 0.594449 | 1_2:+12319736 | None:intergenic |
| AAAGCCTTGTATATGAGCCA+AGG | 0.598222 | 1_2:-12318265 | Msa0056680:three_prime_UTR |
| TAAGATGGTTGAAGTAACAA+AGG | 0.601645 | 1_2:+12320500 | None:intergenic |
| ACCTATCTACAACACAACCA+TGG | 0.603127 | 1_2:-12318431 | Msa0056680:CDS |
| TATGGGTTTGCACTTGATCG+AGG | 0.603951 | 1_2:-12318395 | Msa0056680:CDS |
| TATTGATATATGTATGTCTG+AGG | 0.613114 | 1_2:+12318919 | None:intergenic |
| ACAAATAGGGTTGTGAAGAG+AGG | 0.616885 | 1_2:+12320341 | None:intergenic |
| GAAAGGAAGAGAGTCTCTGT+GGG | 0.624738 | 1_2:+12318894 | None:intergenic |
| TGAATGCTTTCTCTAGCTCG+CGG | 0.629956 | 1_2:+12319735 | None:intergenic |
| TGTTCAGCAGTGCAATTGAG+TGG | 0.630731 | 1_2:-12319109 | Msa0056680:CDS |
| TGAAAGGAAGAGAGTCTCTG+TGG | 0.638408 | 1_2:+12318893 | None:intergenic |
| GCTTTGGATTCTGAGTAAGG+TGG | 0.656572 | 1_2:-12318333 | Msa0056680:CDS |
| TTATATTTAAGGAACATGTG+AGG | 0.659712 | 1_2:-12319442 | Msa0056680:CDS |
| TGCAACAAGATGGCACATGT+TGG | 0.671190 | 1_2:-12319023 | Msa0056680:CDS |
| ACCTTCAACAGAATCAACCA+AGG | 0.695999 | 1_2:-12320603 | Msa0056680:CDS |
| CTATCTACAACACAACCATG+GGG | 0.709943 | 1_2:-12318429 | Msa0056680:CDS |
| GACACTACATATGTTCGTCG+CGG | 0.737129 | 1_2:-12319764 | Msa0056680:CDS |
| TATCTACAACACAACCATGG+GGG | 0.737474 | 1_2:-12318428 | Msa0056680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTAGGATAATTAAAA+GGG | + | chr1_2:12318804-12318823 | None:intergenic | 10.0% |
| !! | AAAATATTAGGATAATTAAA+AGG | + | chr1_2:12318805-12318824 | None:intergenic | 10.0% |
| !!! | AATTTTTATGAGACAATTAT+GGG | + | chr1_2:12318187-12318206 | None:intergenic | 15.0% |
| !!! | TAATTTTTATGAGACAATTA+TGG | + | chr1_2:12318188-12318207 | None:intergenic | 15.0% |
| !! | TTAGAAAAACTTTCTATTTA+AGG | + | chr1_2:12319710-12319729 | None:intergenic | 15.0% |
| !!! | AAGAAGGCAAATAATTTTTT+GGG | + | chr1_2:12318141-12318160 | None:intergenic | 20.0% |
| !!! | TAAGAAGGCAAATAATTTTT+TGG | + | chr1_2:12318142-12318161 | None:intergenic | 20.0% |
| !!! | ACTATGATGAAAAATTGTTT+TGG | + | chr1_2:12318675-12318694 | None:intergenic | 20.0% |
| !! | AATGCAAGAAGAAAAATATT+AGG | + | chr1_2:12318817-12318836 | None:intergenic | 20.0% |
| !!! | CCAAGTAAAAATAACATTTT+CGG | - | chr1_2:12318940-12318959 | Msa0056680:CDS | 20.0% |
| !!! | TTGTATTTATGTTACTTTCA+TGG | - | chr1_2:12319284-12319303 | Msa0056680:intron | 20.0% |
| !!! | AATTATGGATTATAAGTCAT+AGG | - | chr1_2:12319461-12319480 | Msa0056680:CDS | 20.0% |
| ! | TGAATTGTTGAGACTAAAAA+TGG | + | chr1_2:12318212-12318231 | None:intergenic | 25.0% |
| ! | AGAGGAATTATCAATGTTAA+TGG | + | chr1_2:12318299-12318318 | None:intergenic | 25.0% |
| ! | TTGATGAACTAAGAAACTTT+CGG | - | chr1_2:12318416-12318435 | Msa0056680:CDS | 25.0% |
| !!! | AAAAATTGTTTTGGTACCTT+CGG | + | chr1_2:12318666-12318685 | None:intergenic | 25.0% |
| !!! | CCGAAAATGTTATTTTTACT+TGG | + | chr1_2:12318943-12318962 | None:intergenic | 25.0% |
| ! | TAGAGTATGTTTGTAACATA+GGG | + | chr1_2:12319022-12319041 | None:intergenic | 25.0% |
| ! | TTAGAGTATGTTTGTAACAT+AGG | + | chr1_2:12319023-12319042 | None:intergenic | 25.0% |
| ! | CTTCAAATATTGAGATTTGA+AGG | - | chr1_2:12319364-12319383 | Msa0056680:CDS | 25.0% |
| ! | TTATATTTAAGGAACATGTG+AGG | - | chr1_2:12319428-12319447 | Msa0056680:CDS | 25.0% |
| ! | ATTCTTTATAATCTGTTGTG+TGG | - | chr1_2:12319489-12319508 | Msa0056680:CDS | 25.0% |
| !! | AGTTTTTCTAATTGTGTGAT+TGG | - | chr1_2:12319719-12319738 | Msa0056680:CDS | 25.0% |
| ! | TATTGATATATGTATGTCTG+AGG | + | chr1_2:12319954-12319973 | None:intergenic | 25.0% |
| !!! | CACATTATCTTTTTCACTAT+TGG | - | chr1_2:12320380-12320399 | Msa0056680:CDS | 25.0% |
| ! | ATATAATGATACACATTCCT+TGG | + | chr1_2:12320625-12320644 | None:intergenic | 25.0% |
| ! | GTGTATCATTATATCTCATA+TGG | - | chr1_2:12320631-12320650 | Msa0056680:five_prime_UTR | 25.0% |
| TAAGATGGTTGAAGTAACAA+AGG | + | chr1_2:12318373-12318392 | None:intergenic | 30.0% | |
| !! | GATTTTGATCTTGCATAAGA+TGG | + | chr1_2:12318388-12318407 | None:intergenic | 30.0% |
| TCTTAGTTCATCAAAGATCA+TGG | + | chr1_2:12318410-12318429 | None:intergenic | 30.0% | |
| AGCAGATACTTGAACAAATA+GGG | + | chr1_2:12318545-12318564 | None:intergenic | 30.0% | |
| AAGCAGATACTTGAACAAAT+AGG | + | chr1_2:12318546-12318565 | None:intergenic | 30.0% | |
| ! | TATTTGAACAAGCTTGTTCA+AGG | + | chr1_2:12318593-12318612 | None:intergenic | 30.0% |
| ! | CAATTTTATTGTTTCGCCTA+GGG | + | chr1_2:12318779-12318798 | None:intergenic | 30.0% |
| ! | ACAATTTTATTGTTTCGCCT+AGG | + | chr1_2:12318780-12318799 | None:intergenic | 30.0% |
| CTAAGAATAGAAGTTGTCTT+AGG | + | chr1_2:12319072-12319091 | None:intergenic | 30.0% | |
| ACAAACACAATTGAGTGTAT+TGG | + | chr1_2:12319268-12319287 | None:intergenic | 30.0% | |
| ! | CAAATCTCAATATTTGAAGC+TGG | + | chr1_2:12319363-12319382 | None:intergenic | 30.0% |
| ! | AGAAGCAGGTGTTATATTTA+AGG | - | chr1_2:12319417-12319436 | Msa0056680:CDS | 30.0% |
| TACAATGAGTGTTAGTCAAT+TGG | - | chr1_2:12319513-12319532 | Msa0056680:CDS | 30.0% | |
| ACAATGAGTGTTAGTCAATT+GGG | - | chr1_2:12319514-12319533 | Msa0056680:CDS | 30.0% | |
| ACATTAATGTACTTACCACA+AGG | + | chr1_2:12319597-12319616 | None:intergenic | 30.0% | |
| TTGTTTCAATTGCAACAAGA+TGG | - | chr1_2:12319837-12319856 | Msa0056680:intron | 30.0% | |
| TAAAGATTGTCTAGTCTGAA+AGG | + | chr1_2:12319996-12320015 | None:intergenic | 30.0% | |
| TTTCAGACTAGACAATCTTT+AGG | - | chr1_2:12319995-12320014 | Msa0056680:intron | 30.0% | |
| AACTAAAATAAACACATCCG+AGG | + | chr1_2:12320150-12320169 | None:intergenic | 30.0% | |
| ATTCAAGTCTAGAAAAGTGA+AGG | - | chr1_2:12320577-12320596 | Msa0056680:CDS | 30.0% | |
| ATCATTATATCTCATATGGC+TGG | - | chr1_2:12320635-12320654 | Msa0056680:five_prime_UTR | 30.0% | |
| GAGAGACTATAGAAGTAAGA+AGG | + | chr1_2:12318157-12318176 | None:intergenic | 35.0% | |
| AATGTTAATGGTTGTGTCCT+TGG | + | chr1_2:12318287-12318306 | None:intergenic | 35.0% | |
| !! | GAAAGATACTCTTTTGGAAG+AGG | + | chr1_2:12318317-12318336 | None:intergenic | 35.0% |
| ! | GTCAGAGAAAGATACTCTTT+TGG | + | chr1_2:12318323-12318342 | None:intergenic | 35.0% |
| ACTTTCGGATATGCCTTAAA+TGG | - | chr1_2:12318431-12318450 | Msa0056680:CDS | 35.0% | |
| AATGAAAGTGAGGAAGATGA+AGG | + | chr1_2:12318506-12318525 | None:intergenic | 35.0% | |
| TGCATGTGTGTATACTATCA+TGG | - | chr1_2:12318701-12318720 | Msa0056680:intron | 35.0% | |
| TTGAAATTGTGATCACAGCT+AGG | - | chr1_2:12318731-12318750 | Msa0056680:intron | 35.0% | |
| TGAAATTGTGATCACAGCTA+GGG | - | chr1_2:12318732-12318751 | Msa0056680:intron | 35.0% | |
| AAACCAATGTGTTATGATGC+AGG | - | chr1_2:12319041-12319060 | Msa0056680:CDS | 35.0% | |
| ATACCTGCATCATAACACAT+TGG | + | chr1_2:12319047-12319066 | None:intergenic | 35.0% | |
| AATGTGTTATGATGCAGGTA+TGG | - | chr1_2:12319046-12319065 | Msa0056680:CDS | 35.0% | |
| GTTCTACAAAGAAAGAAGGT+AGG | + | chr1_2:12319180-12319199 | None:intergenic | 35.0% | |
| GCAAGTTCTACAAAGAAAGA+AGG | + | chr1_2:12319184-12319203 | None:intergenic | 35.0% | |
| ! | GTGTTCACAAGCTTTTTGAA+GGG | - | chr1_2:12319386-12319405 | Msa0056680:CDS | 35.0% |
| TGAGGATTAGAAGGCAATTA+TGG | - | chr1_2:12319446-12319465 | Msa0056680:CDS | 35.0% | |
| GAGAAGACATTCTTCAATTC+TGG | - | chr1_2:12319568-12319587 | Msa0056680:CDS | 35.0% | |
| AAAATCACACATAGAGCTCA+AGG | - | chr1_2:12319812-12319831 | Msa0056680:intron | 35.0% | |
| ATCAGAATCACTACTATCAC+TGG | + | chr1_2:12319930-12319949 | None:intergenic | 35.0% | |
| TTCTTAGTGAGTTTAGTCCT+CGG | - | chr1_2:12320130-12320149 | Msa0056680:intron | 35.0% | |
| ATGGGGGAATAACATTGTAT+GGG | - | chr1_2:12320458-12320477 | Msa0056680:CDS | 35.0% | |
| TTGAATTCTCCATAGTGCTT+TGG | - | chr1_2:12320521-12320540 | Msa0056680:CDS | 35.0% | |
| ACCTTCAACAGAATCAACCA+AGG | - | chr1_2:12318267-12318286 | Msa0056680:three_prime_UTR | 40.0% | |
| ! | TCCTTGGTTGATTCTGTTGA+AGG | + | chr1_2:12318271-12318290 | None:intergenic | 40.0% |
| ! | GATCAAGAGCACACCATTTA+AGG | + | chr1_2:12318447-12318466 | None:intergenic | 40.0% |
| CTTGATCACTCATCTTGTGT+TGG | - | chr1_2:12318460-12318479 | Msa0056680:intron | 40.0% | |
| AGAGAGGAACAATGAAAGTG+AGG | + | chr1_2:12318516-12318535 | None:intergenic | 40.0% | |
| ACAAATAGGGTTGTGAAGAG+AGG | + | chr1_2:12318532-12318551 | None:intergenic | 40.0% | |
| AAGGAGATAGGATCAACTTC+AGG | + | chr1_2:12318574-12318593 | None:intergenic | 40.0% | |
| ! | ACAAGCTTGTTCAAGGAGAT+AGG | + | chr1_2:12318586-12318605 | None:intergenic | 40.0% |
| GAGAGTGAAGAAGGAAATGA+TGG | + | chr1_2:12318632-12318651 | None:intergenic | 40.0% | |
| TTTGGTACCTTCGGAAGAAA+CGG | + | chr1_2:12318657-12318676 | None:intergenic | 40.0% | |
| !! | TTTCGGTGCCCCTAAAAAAA+TGG | - | chr1_2:12318957-12318976 | Msa0056680:CDS | 40.0% |
| !!! | CCAGGACACCATTTTTTTAG+GGG | + | chr1_2:12318968-12318987 | None:intergenic | 40.0% |
| !!! | CCCAGGACACCATTTTTTTA+GGG | + | chr1_2:12318969-12318988 | None:intergenic | 40.0% |
| CCCTAAAAAAATGGTGTCCT+GGG | - | chr1_2:12318966-12318985 | Msa0056680:CDS | 40.0% | |
| GTATTGGAAATCCAGCACTA+AGG | + | chr1_2:12319252-12319271 | None:intergenic | 40.0% | |
| ! | GGTGTTCACAAGCTTTTTGA+AGG | - | chr1_2:12319385-12319404 | Msa0056680:CDS | 40.0% |
| AGGAACATGTGAGGATTAGA+AGG | - | chr1_2:12319437-12319456 | Msa0056680:CDS | 40.0% | |
| !! | GGGTTCTCTATTGCTAGTTT+TGG | - | chr1_2:12319534-12319553 | Msa0056680:CDS | 40.0% |
| ACCTATCTACAACACAACCA+TGG | - | chr1_2:12320439-12320458 | Msa0056680:CDS | 40.0% | |
| CCTATCTACAACACAACCAT+GGG | - | chr1_2:12320440-12320459 | Msa0056680:CDS | 40.0% | |
| CTATCTACAACACAACCATG+GGG | - | chr1_2:12320441-12320460 | Msa0056680:CDS | 40.0% | |
| TATCTACAACACAACCATGG+GGG | - | chr1_2:12320442-12320461 | Msa0056680:CDS | 40.0% | |
| CATACAATGTTATTCCCCCA+TGG | + | chr1_2:12320459-12320478 | None:intergenic | 40.0% | |
| CATGGGGGAATAACATTGTA+TGG | - | chr1_2:12320457-12320476 | Msa0056680:CDS | 40.0% | |
| ! | ACTCAGAATCCAAAGCACTA+TGG | + | chr1_2:12320533-12320552 | None:intergenic | 40.0% |
| ! | AGTGCTTTGGATTCTGAGTA+AGG | - | chr1_2:12320534-12320553 | Msa0056680:CDS | 40.0% |
| ! | AAAGCCTTGTATATGAGCCA+AGG | - | chr1_2:12320605-12320624 | Msa0056680:CDS | 40.0% |
| CATTCCTTGGCTCATATACA+AGG | + | chr1_2:12320612-12320631 | None:intergenic | 40.0% | |
| ! | TGTGTTGTTGCTGTTGCTGT+TGG | + | chr1_2:12318345-12318364 | None:intergenic | 45.0% |
| ATGATGGCAAGTGCAGATTC+AGG | + | chr1_2:12318616-12318635 | None:intergenic | 45.0% | |
| GAAACGGTAGAGAGTGAAGA+AGG | + | chr1_2:12318641-12318660 | None:intergenic | 45.0% | |
| CCCCTAAAAAAATGGTGTCC+TGG | - | chr1_2:12318965-12318984 | Msa0056680:CDS | 45.0% | |
| !!! | GCCCAGGACACCATTTTTTT+AGG | + | chr1_2:12318970-12318989 | None:intergenic | 45.0% |
| GACACTACATATGTTCGTCG+CGG | - | chr1_2:12319106-12319125 | Msa0056680:CDS | 45.0% | |
| ! | TGAATGCTTTCTCTAGCTCG+CGG | + | chr1_2:12319138-12319157 | None:intergenic | 45.0% |
| GGAAATCCAGCACTAAGGTT+TGG | + | chr1_2:12319247-12319266 | None:intergenic | 45.0% | |
| CTTTCATGGCTGTACAGAAC+TGG | - | chr1_2:12319298-12319317 | Msa0056680:CDS | 45.0% | |
| !! | CACAAGCTTTTTGAAGGGTG+TGG | - | chr1_2:12319391-12319410 | Msa0056680:CDS | 45.0% |
| CTTCAATTCTGGTGACCTTG+TGG | - | chr1_2:12319579-12319598 | Msa0056680:CDS | 45.0% | |
| TGTTCAGCAGTGCAATTGAG+TGG | - | chr1_2:12319761-12319780 | Msa0056680:CDS | 45.0% | |
| GGCTTCTTCTTGTGCATCTT+AGG | - | chr1_2:12319782-12319801 | Msa0056680:CDS | 45.0% | |
| TGCAACAAGATGGCACATGT+TGG | - | chr1_2:12319847-12319866 | Msa0056680:intron | 45.0% | |
| GAAAGGAAGAGAGTCTCTGT+GGG | + | chr1_2:12319979-12319998 | None:intergenic | 45.0% | |
| TGAAAGGAAGAGAGTCTCTG+TGG | + | chr1_2:12319980-12319999 | None:intergenic | 45.0% | |
| CCCATGGTTGTGTTGTAGAT+AGG | + | chr1_2:12320443-12320462 | None:intergenic | 45.0% | |
| TATGGGTTTGCACTTGATCG+AGG | - | chr1_2:12320475-12320494 | Msa0056680:CDS | 45.0% | |
| ! | GCTTTGGATTCTGAGTAAGG+TGG | - | chr1_2:12320537-12320556 | Msa0056680:CDS | 45.0% |
| CTCTCTACCGTTTCTTCCGA+AGG | - | chr1_2:12318647-12318666 | Msa0056680:intron | 50.0% | |
| ATTGTGATCACAGCTAGGGC+CGG | - | chr1_2:12318736-12318755 | Msa0056680:intron | 50.0% | |
| GGCACCAAGAATCTTAGGAC+CGG | + | chr1_2:12318758-12318777 | None:intergenic | 50.0% | |
| ! | CCTAGGGCACCAAGAATCTT+AGG | + | chr1_2:12318763-12318782 | None:intergenic | 50.0% |
| !! | CCTAAGATTCTTGGTGCCCT+AGG | - | chr1_2:12318760-12318779 | Msa0056680:intron | 50.0% |
| GTAACATAGGGTAGCCCTGA+GGG | + | chr1_2:12319010-12319029 | None:intergenic | 50.0% | |
| TGTAACATAGGGTAGCCCTG+AGG | + | chr1_2:12319011-12319030 | None:intergenic | 50.0% | |
| ! | GAATGCTTTCTCTAGCTCGC+GGG | + | chr1_2:12319137-12319156 | None:intergenic | 50.0% |
| TCAGCACCAAACCTTAGTGC+TGG | - | chr1_2:12319238-12319257 | Msa0056680:intron | 50.0% | |
| AGGGCCGGTCCTAAGATTCT+TGG | - | chr1_2:12318751-12318770 | Msa0056680:intron | 55.0% | |
| ! | GAAGGGTGTGGATCAGAAGC+AGG | - | chr1_2:12319403-12319422 | Msa0056680:CDS | 55.0% |
| CATAGGGTAGCCCTGAGGGT+GGG | + | chr1_2:12319006-12319025 | None:intergenic | 60.0% | |
| ACATAGGGTAGCCCTGAGGG+TGG | + | chr1_2:12319007-12319026 | None:intergenic | 60.0% | |
| AGGGTAGCCCTGAGGGTGGG+CGG | + | chr1_2:12319003-12319022 | None:intergenic | 70.0% | |
| TAGCCCTGAGGGTGGGCGGG+GGG | + | chr1_2:12318999-12319018 | None:intergenic | 75.0% | |
| GTAGCCCTGAGGGTGGGCGG+GGG | + | chr1_2:12319000-12319019 | None:intergenic | 75.0% | |
| GGTAGCCCTGAGGGTGGGCG+GGG | + | chr1_2:12319001-12319020 | None:intergenic | 75.0% | |
| GGGTAGCCCTGAGGGTGGGC+GGG | + | chr1_2:12319002-12319021 | None:intergenic | 75.0% | |
| ! | AGCCCTGAGGGTGGGCGGGG+GGG | + | chr1_2:12318998-12319017 | None:intergenic | 80.0% |
| ! | CCTGAGGGTGGGCGGGGGGG+CGG | + | chr1_2:12318995-12319014 | None:intergenic | 85.0% |
| ! | CGCCCCCCCGCCCACCCTCA+GGG | - | chr1_2:12318993-12319012 | Msa0056680:CDS | 85.0% |
| ! | CCGCCCCCCCGCCCACCCTC+AGG | - | chr1_2:12318992-12319011 | Msa0056680:CDS | 90.0% |
| ! | GGGCGGGGGGGCGGCAGCCC+AGG | + | chr1_2:12318986-12319005 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 12318132 | 12320760 | 12318132 | ID=Msa0056680;Name=Msa0056680 |
| chr1_2 | mRNA | 12318132 | 12320760 | 12318132 | ID=Msa0056680-mRNA-1;Parent=Msa0056680;Name=Msa0056680-mRNA-1;_AED=0.01;_eAED=0.01;_QI=130|1|1|1|1|1|4|187|446 |
| chr1_2 | exon | 12318132 | 12318455 | 12318132 | ID=Msa0056680-mRNA-1:exon:4811;Parent=Msa0056680-mRNA-1 |
| chr1_2 | exon | 12318876 | 12319134 | 12318876 | ID=Msa0056680-mRNA-1:exon:4810;Parent=Msa0056680-mRNA-1 |
| chr1_2 | exon | 12319292 | 12319829 | 12319292 | ID=Msa0056680-mRNA-1:exon:4809;Parent=Msa0056680-mRNA-1 |
| chr1_2 | exon | 12320224 | 12320760 | 12320224 | ID=Msa0056680-mRNA-1:exon:4808;Parent=Msa0056680-mRNA-1 |
| chr1_2 | five_prime_UTR | 12320631 | 12320760 | 12320631 | ID=Msa0056680-mRNA-1:five_prime_utr;Parent=Msa0056680-mRNA-1 |
| chr1_2 | CDS | 12320224 | 12320630 | 12320224 | ID=Msa0056680-mRNA-1:cds;Parent=Msa0056680-mRNA-1 |
| chr1_2 | CDS | 12319292 | 12319829 | 12319292 | ID=Msa0056680-mRNA-1:cds;Parent=Msa0056680-mRNA-1 |
| chr1_2 | CDS | 12318876 | 12319134 | 12318876 | ID=Msa0056680-mRNA-1:cds;Parent=Msa0056680-mRNA-1 |
| chr1_2 | CDS | 12318319 | 12318455 | 12318319 | ID=Msa0056680-mRNA-1:cds;Parent=Msa0056680-mRNA-1 |
| chr1_2 | three_prime_UTR | 12318132 | 12318318 | 12318132 | ID=Msa0056680-mRNA-1:three_prime_utr;Parent=Msa0056680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
