AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0056550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0056550 MtrunA17_Chr1g0147671 98.430 446 7 0 1 446 1 446 0.0 896
Msa0056550 MtrunA17_Chr3g0099911 32.667 450 281 7 13 443 1 447 5.56e-79 252
Msa0056550 MtrunA17_Chr2g0289391 33.005 406 255 3 54 443 25 429 9.72e-72 233
Msa0056550 MtrunA17_Chr8g0377091 29.157 415 270 6 46 444 43 449 3.78e-57 195
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0056550 AT2G21080.1 60.291 413 137 10 40 445 21 413 6.63e-162 463
Msa0056550 AT3G20300.1 35.225 423 252 4 41 443 29 449 5.94e-84 265
Msa0056550 AT1G50630.1 35.714 406 228 6 53 429 35 436 4.12e-79 253
Msa0056550 AT1G50630.2 37.748 302 186 2 53 354 35 334 7.06e-66 218
Msa0056550 AT4G03820.1 31.332 383 243 4 68 431 40 421 3.11e-58 197
Msa0056550 AT4G22270.1 31.552 393 252 3 68 444 43 434 7.36e-58 197
Msa0056550 AT4G03820.2 31.332 383 243 4 68 431 40 421 7.54e-58 197
Msa0056550 AT4G03820.3 31.332 383 243 4 68 431 89 470 7.78e-58 198
Msa0056550 AT4G22270.2 31.316 380 244 3 68 431 43 421 1.55e-57 196
Msa0056550 AT4G03820.4 31.332 383 243 4 68 431 89 470 2.13e-57 197
Msa0056550 AT1G67570.1 30.500 400 248 6 66 444 62 452 6.56e-56 192
Msa0056550 AT1G67570.2 33.065 248 159 2 117 364 112 352 1.21e-40 150

Find 80 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAAGAGCACACCATTTA+AGG 0.198157 1_2:-12192926 None:intergenic
AGAAGCAGGTGTTATATTTA+AGG 0.203283 1_2:+12193905 Msa0056550:CDS
GGCTTCTTCTTGTGCATCTT+AGG 0.235318 1_2:+12194270 Msa0056550:CDS
GAGAAGACATTCTTCAATTC+TGG 0.252926 1_2:+12194056 Msa0056550:CDS
GGGTTCTCTATTGCTAGTTT+TGG 0.258616 1_2:+12194022 Msa0056550:CDS
ACTTTCGGATATGCCTTAAA+TGG 0.275331 1_2:+12192913 Msa0056550:CDS
AAGCAGATACTTGAACAAAT+AGG 0.282476 1_2:-12193025 None:intergenic
TGAGGATTAGAAGGCAATTA+TGG 0.287173 1_2:+12193934 Msa0056550:CDS
AGAGGAATTATCAATGTTAA+TGG 0.296185 1_2:-12192778 None:intergenic
TACAATGAGTGTTAGTCAAT+TGG 0.314349 1_2:+12194001 Msa0056550:CDS
TTGTATTTATGTTACTTTCA+TGG 0.331455 1_2:+12193772 Msa0056550:CDS
TTTCAGACTAGACAATCTTT+AGG 0.339756 1_2:+12194483 Msa0056550:CDS
GTCAGAGAAAGATACTCTTT+TGG 0.360397 1_2:-12192802 None:intergenic
TCCTTGGTTGATTCTGTTGA+AGG 0.377806 1_2:-12192750 None:intergenic
AATGTTAATGGTTGTGTCCT+TGG 0.382680 1_2:-12192766 None:intergenic
CTTCAAATATTGAGATTTGA+AGG 0.390973 1_2:+12193852 Msa0056550:CDS
AGGAACATGTGAGGATTAGA+AGG 0.398671 1_2:+12193925 Msa0056550:CDS
TTGAATTCTCCATAGTGCTT+TGG 0.398782 1_2:+12195009 Msa0056550:CDS
CTTTCATGGCTGTACAGAAC+TGG 0.398954 1_2:+12193786 Msa0056550:CDS
ATGATGGCAAGTGCAGATTC+AGG 0.410877 1_2:-12193095 None:intergenic
AGCAGATACTTGAACAAATA+GGG 0.411563 1_2:-12193024 None:intergenic
TTGATGAACTAAGAAACTTT+CGG 0.420225 1_2:+12192898 Msa0056550:CDS
ACAAACACAATTGAGTGTAT+TGG 0.427450 1_2:-12193753 None:intergenic
ACAATGAGTGTTAGTCAATT+GGG 0.429137 1_2:+12194002 Msa0056550:CDS
ACAAGCTTGTTCAAGGAGAT+AGG 0.430827 1_2:-12193065 None:intergenic
GTGTATCATTATATCTCATA+TGG 0.437531 1_2:+12195119 Msa0056550:three_prime_UTR
AGTGCTTTGGATTCTGAGTA+AGG 0.442534 1_2:+12195022 Msa0056550:CDS
TCTTAGTTCATCAAAGATCA+TGG 0.445556 1_2:-12192889 None:intergenic
CTCTCTACCGTTTCTTCCGA+AGG 0.449304 1_2:+12193129 Msa0056550:CDS
ACTCAGAATCCAAAGCACTA+TGG 0.455666 1_2:-12195018 None:intergenic
GGAAATCCAGCACTAAGGTT+TGG 0.455769 1_2:-12193732 None:intergenic
TGTGTTGTTGCTGTTGCTGT+TGG 0.458307 1_2:-12192824 None:intergenic
CCCATGGTTGTGTTGTAGAT+AGG 0.469534 1_2:-12194928 None:intergenic
CAAATCTCAATATTTGAAGC+TGG 0.469941 1_2:-12193848 None:intergenic
ATATAATGATACACATTCCT+TGG 0.471917 1_2:-12195110 None:intergenic
CATTCCTTGGCTCATATACA+AGG 0.472347 1_2:-12195097 None:intergenic
GAGAGACTATAGAAGTAAGA+AGG 0.481703 1_2:-12192636 None:intergenic
GAAACGGTAGAGAGTGAAGA+AGG 0.481723 1_2:-12193120 None:intergenic
TTGTTTCAATTGCAACAAGA+TGG 0.484621 1_2:+12194325 Msa0056550:CDS
TATTTGAACAAGCTTGTTCA+AGG 0.484907 1_2:-12193072 None:intergenic
GAGAGTGAAGAAGGAAATGA+TGG 0.494904 1_2:-12193111 None:intergenic
TCAGCACCAAACCTTAGTGC+TGG 0.495418 1_2:+12193726 Msa0056550:CDS
AATTATGGATTATAAGTCAT+AGG 0.501167 1_2:+12193949 Msa0056550:CDS
ATCATTATATCTCATATGGC+TGG 0.514071 1_2:+12195123 Msa0056550:three_prime_UTR
CTTGATCACTCATCTTGTGT+TGG 0.518508 1_2:+12192942 Msa0056550:CDS
TAAAGATTGTCTAGTCTGAA+AGG 0.525351 1_2:-12194481 None:intergenic
GAAGGGTGTGGATCAGAAGC+AGG 0.525748 1_2:+12193891 Msa0056550:CDS
ATCAGAATCACTACTATCAC+TGG 0.527982 1_2:-12194415 None:intergenic
CCTATCTACAACACAACCAT+GGG 0.534196 1_2:+12194928 Msa0056550:CDS
CTAAGAATAGAAGTTGCCTT+AGG 0.539238 1_2:-12193557 None:intergenic
AAGGAGATAGGATCAACTTC+AGG 0.540232 1_2:-12193053 None:intergenic
AGAGAGGAACAATGAAAGTG+AGG 0.542144 1_2:-12192995 None:intergenic
CTTCAATTCTGGTGACCTTG+TGG 0.547529 1_2:+12194067 Msa0056550:CDS
TTTGGTACCTTCGGAAGAAA+CGG 0.549992 1_2:-12193136 None:intergenic
AAAATCACACATAGAGCTCA+AGG 0.557605 1_2:+12194300 Msa0056550:CDS
GCAAGTTCTACAAAGAAAGA+AGG 0.565294 1_2:-12193669 None:intergenic
GTTCTACAAAGAAAGAAGGT+AGG 0.566351 1_2:-12193665 None:intergenic
ATTCTTTATAATCTGTTGTG+TGG 0.569662 1_2:+12193977 Msa0056550:CDS
AATGAAAGTGAGGAAGATGA+AGG 0.573099 1_2:-12192985 None:intergenic
GTATTGGAAATCCAGCACTA+AGG 0.581099 1_2:-12193737 None:intergenic
TATGATGCAGGTATGGCCTA+AGG 0.582377 1_2:+12193541 Msa0056550:intron
ATTCAAGTCTAGAAAAGTGA+AGG 0.587761 1_2:+12195065 Msa0056550:three_prime_UTR
GAATGCTTTCTCTAGCTCGC+GGG 0.594449 1_2:-12193622 None:intergenic
AAAGCCTTGTATATGAGCCA+AGG 0.598222 1_2:+12195093 Msa0056550:three_prime_UTR
TAAGATGGTTGAAGTAACAA+AGG 0.601645 1_2:-12192852 None:intergenic
ACCTATCTACAACACAACCA+TGG 0.603127 1_2:+12194927 Msa0056550:CDS
TATGGGTTTGCACTTGATCG+AGG 0.603951 1_2:+12194963 Msa0056550:CDS
TATTGATATATGTATGTCTG+AGG 0.613114 1_2:-12194439 None:intergenic
ACAAATAGGGTTGTGAAGAG+AGG 0.616885 1_2:-12193011 None:intergenic
GAAAGGAAGAGAGTCTCTGT+GGG 0.624738 1_2:-12194464 None:intergenic
TGAATGCTTTCTCTAGCTCG+CGG 0.629956 1_2:-12193623 None:intergenic
TGTTCAGCAGTGCAATTGAG+TGG 0.630731 1_2:+12194249 Msa0056550:CDS
TGAAAGGAAGAGAGTCTCTG+TGG 0.638408 1_2:-12194465 None:intergenic
GCTTTGGATTCTGAGTAAGG+TGG 0.656572 1_2:+12195025 Msa0056550:CDS
TTATATTTAAGGAACATGTG+AGG 0.659712 1_2:+12193916 Msa0056550:CDS
TGCAACAAGATGGCACATGT+TGG 0.671190 1_2:+12194335 Msa0056550:CDS
ACCTTCAACAGAATCAACCA+AGG 0.695999 1_2:+12192749 Msa0056550:CDS
CTATCTACAACACAACCATG+GGG 0.709943 1_2:+12194929 Msa0056550:CDS
GACACTACATATGTTCGTCG+CGG 0.737129 1_2:+12193594 Msa0056550:CDS
TATCTACAACACAACCATGG+GGG 0.737474 1_2:+12194930 Msa0056550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTATGAGAGAATTAT+GGG - chr1_2:12192669-12192688 None:intergenic 15.0%
!!! TAATTTTTATGAGAGAATTA+TGG - chr1_2:12192670-12192689 None:intergenic 15.0%
!! TTAGAAAAACTTTCTATTTA+AGG - chr1_2:12194198-12194217 None:intergenic 15.0%
!!! AAGAAGGCAAATAATTTTTT+GGG - chr1_2:12192623-12192642 None:intergenic 20.0%
!!! TAAGAAGGCAAATAATTTTT+TGG - chr1_2:12192624-12192643 None:intergenic 20.0%
!!! ACTATGATGAAAAATTGTTT+TGG - chr1_2:12193157-12193176 None:intergenic 20.0%
!! AATGCAAGAAGAAAAATATT+AGG - chr1_2:12193299-12193318 None:intergenic 20.0%
!! TTCAATAGAATTAATCAAAG+CGG + chr1_2:12193370-12193389 Msa0056550:intron 20.0%
!!! CTGAAAATGTTATTTTTACT+TGG - chr1_2:12193430-12193449 None:intergenic 20.0%
!!! TTGTATTTATGTTACTTTCA+TGG + chr1_2:12193772-12193791 Msa0056550:CDS 20.0%
!!! AATTATGGATTATAAGTCAT+AGG + chr1_2:12193949-12193968 Msa0056550:CDS 20.0%
! TGAATTGTTGAGACTAAAAA+TGG - chr1_2:12192694-12192713 None:intergenic 25.0%
! AGAGGAATTATCAATGTTAA+TGG - chr1_2:12192781-12192800 None:intergenic 25.0%
! TTGATGAACTAAGAAACTTT+CGG + chr1_2:12192898-12192917 Msa0056550:CDS 25.0%
!!! AAAAATTGTTTTGGTACCTT+CGG - chr1_2:12193148-12193167 None:intergenic 25.0%
!! CAATTTTATTATTTCGCCTA+GGG - chr1_2:12193261-12193280 None:intergenic 25.0%
!! ACAATTTTATTATTTCGCCT+AGG - chr1_2:12193262-12193281 None:intergenic 25.0%
! TAGTGTATGTTTGTAACTTA+GGG - chr1_2:12193510-12193529 None:intergenic 25.0%
! TTAGTGTATGTTTGTAACTT+AGG - chr1_2:12193511-12193530 None:intergenic 25.0%
! CTTCAAATATTGAGATTTGA+AGG + chr1_2:12193852-12193871 Msa0056550:CDS 25.0%
! TTATATTTAAGGAACATGTG+AGG + chr1_2:12193916-12193935 Msa0056550:CDS 25.0%
! ATTCTTTATAATCTGTTGTG+TGG + chr1_2:12193977-12193996 Msa0056550:CDS 25.0%
!! AGTTTTTCTAATTGTGTGAT+TGG + chr1_2:12194207-12194226 Msa0056550:intron 25.0%
! TATTGATATATGTATGTCTG+AGG - chr1_2:12194442-12194461 None:intergenic 25.0%
!!! CACATTATCTTTTTCACTAT+TGG + chr1_2:12194868-12194887 Msa0056550:intron 25.0%
! ATATAATGATACACATTCCT+TGG - chr1_2:12195113-12195132 None:intergenic 25.0%
! GTGTATCATTATATCTCATA+TGG + chr1_2:12195119-12195138 Msa0056550:three_prime_UTR 25.0%
TAAGATGGTTGAAGTAACAA+AGG - chr1_2:12192855-12192874 None:intergenic 30.0%
!! GATTTTGATCTTGCATAAGA+TGG - chr1_2:12192870-12192889 None:intergenic 30.0%
TCTTAGTTCATCAAAGATCA+TGG - chr1_2:12192892-12192911 None:intergenic 30.0%
AGCAGATACTTGAACAAATA+GGG - chr1_2:12193027-12193046 None:intergenic 30.0%
AAGCAGATACTTGAACAAAT+AGG - chr1_2:12193028-12193047 None:intergenic 30.0%
! TATTTGAACAAGCTTGTTCA+AGG - chr1_2:12193075-12193094 None:intergenic 30.0%
AGAATTAATCAAAGCGGAAT+AGG + chr1_2:12193376-12193395 Msa0056550:intron 30.0%
ACAAACACAATTGAGTGTAT+TGG - chr1_2:12193756-12193775 None:intergenic 30.0%
! CAAATCTCAATATTTGAAGC+TGG - chr1_2:12193851-12193870 None:intergenic 30.0%
! AGAAGCAGGTGTTATATTTA+AGG + chr1_2:12193905-12193924 Msa0056550:CDS 30.0%
TACAATGAGTGTTAGTCAAT+TGG + chr1_2:12194001-12194020 Msa0056550:CDS 30.0%
ACAATGAGTGTTAGTCAATT+GGG + chr1_2:12194002-12194021 Msa0056550:CDS 30.0%
ACATTAATGTACTTACCACA+AGG - chr1_2:12194085-12194104 None:intergenic 30.0%
TTGTTTCAATTGCAACAAGA+TGG + chr1_2:12194325-12194344 Msa0056550:CDS 30.0%
TAAAGATTGTCTAGTCTGAA+AGG - chr1_2:12194484-12194503 None:intergenic 30.0%
TTTCAGACTAGACAATCTTT+AGG + chr1_2:12194483-12194502 Msa0056550:CDS 30.0%
AACTAAAATAAACACATCCG+AGG - chr1_2:12194638-12194657 None:intergenic 30.0%
ATTCAAGTCTAGAAAAGTGA+AGG + chr1_2:12195065-12195084 Msa0056550:three_prime_UTR 30.0%
ATCATTATATCTCATATGGC+TGG + chr1_2:12195123-12195142 Msa0056550:three_prime_UTR 30.0%
GAGAGACTATAGAAGTAAGA+AGG - chr1_2:12192639-12192658 None:intergenic 35.0%
AATGTTAATGGTTGTGTCCT+TGG - chr1_2:12192769-12192788 None:intergenic 35.0%
!! GAAAGATACTCTTTTGGAAG+AGG - chr1_2:12192799-12192818 None:intergenic 35.0%
! GTCAGAGAAAGATACTCTTT+TGG - chr1_2:12192805-12192824 None:intergenic 35.0%
ACTTTCGGATATGCCTTAAA+TGG + chr1_2:12192913-12192932 Msa0056550:CDS 35.0%
AATGAAAGTGAGGAAGATGA+AGG - chr1_2:12192988-12193007 None:intergenic 35.0%
TTGAAATTGTGATCACAGCT+AGG + chr1_2:12193213-12193232 Msa0056550:intron 35.0%
TGAAATTGTGATCACAGCTA+GGG + chr1_2:12193214-12193233 Msa0056550:intron 35.0%
TTTCAGTGCCCCTAAAAAAA+TGG + chr1_2:12193444-12193463 Msa0056550:intron 35.0%
AAACCAATGTGTTATGATGC+AGG + chr1_2:12193529-12193548 Msa0056550:intron 35.0%
ATACCTGCATCATAACACAT+TGG - chr1_2:12193535-12193554 None:intergenic 35.0%
AATGTGTTATGATGCAGGTA+TGG + chr1_2:12193534-12193553 Msa0056550:intron 35.0%
CTAAGAATAGAAGTTGCCTT+AGG - chr1_2:12193560-12193579 None:intergenic 35.0%
GTTCTACAAAGAAAGAAGGT+AGG - chr1_2:12193668-12193687 None:intergenic 35.0%
GCAAGTTCTACAAAGAAAGA+AGG - chr1_2:12193672-12193691 None:intergenic 35.0%
! GTGTTCACAAGCTTTTTGAA+GGG + chr1_2:12193874-12193893 Msa0056550:CDS 35.0%
TGAGGATTAGAAGGCAATTA+TGG + chr1_2:12193934-12193953 Msa0056550:CDS 35.0%
GAGAAGACATTCTTCAATTC+TGG + chr1_2:12194056-12194075 Msa0056550:CDS 35.0%
AAAATCACACATAGAGCTCA+AGG + chr1_2:12194300-12194319 Msa0056550:CDS 35.0%
ATCAGAATCACTACTATCAC+TGG - chr1_2:12194418-12194437 None:intergenic 35.0%
TTCTTAGTGAGTTTAGTCCT+CGG + chr1_2:12194618-12194637 Msa0056550:intron 35.0%
ATGGGGGAATAACATTGTAT+GGG + chr1_2:12194946-12194965 Msa0056550:CDS 35.0%
TTGAATTCTCCATAGTGCTT+TGG + chr1_2:12195009-12195028 Msa0056550:CDS 35.0%
ACCTTCAACAGAATCAACCA+AGG + chr1_2:12192749-12192768 Msa0056550:CDS 40.0%
! TCCTTGGTTGATTCTGTTGA+AGG - chr1_2:12192753-12192772 None:intergenic 40.0%
! GATCAAGAGCACACCATTTA+AGG - chr1_2:12192929-12192948 None:intergenic 40.0%
CTTGATCACTCATCTTGTGT+TGG + chr1_2:12192942-12192961 Msa0056550:CDS 40.0%
AGAGAGGAACAATGAAAGTG+AGG - chr1_2:12192998-12193017 None:intergenic 40.0%
ACAAATAGGGTTGTGAAGAG+AGG - chr1_2:12193014-12193033 None:intergenic 40.0%
AAGGAGATAGGATCAACTTC+AGG - chr1_2:12193056-12193075 None:intergenic 40.0%
! ACAAGCTTGTTCAAGGAGAT+AGG - chr1_2:12193068-12193087 None:intergenic 40.0%
GAGAGTGAAGAAGGAAATGA+TGG - chr1_2:12193114-12193133 None:intergenic 40.0%
TTTGGTACCTTCGGAAGAAA+CGG - chr1_2:12193139-12193158 None:intergenic 40.0%
!!! CCAGGACACCATTTTTTTAG+GGG - chr1_2:12193455-12193474 None:intergenic 40.0%
!!! CCCAGGACACCATTTTTTTA+GGG - chr1_2:12193456-12193475 None:intergenic 40.0%
CCCTAAAAAAATGGTGTCCT+GGG + chr1_2:12193453-12193472 Msa0056550:intron 40.0%
GTATTGGAAATCCAGCACTA+AGG - chr1_2:12193740-12193759 None:intergenic 40.0%
! GGTGTTCACAAGCTTTTTGA+AGG + chr1_2:12193873-12193892 Msa0056550:CDS 40.0%
AGGAACATGTGAGGATTAGA+AGG + chr1_2:12193925-12193944 Msa0056550:CDS 40.0%
!! GGGTTCTCTATTGCTAGTTT+TGG + chr1_2:12194022-12194041 Msa0056550:CDS 40.0%
ACCTATCTACAACACAACCA+TGG + chr1_2:12194927-12194946 Msa0056550:CDS 40.0%
CCTATCTACAACACAACCAT+GGG + chr1_2:12194928-12194947 Msa0056550:CDS 40.0%
CTATCTACAACACAACCATG+GGG + chr1_2:12194929-12194948 Msa0056550:CDS 40.0%
TATCTACAACACAACCATGG+GGG + chr1_2:12194930-12194949 Msa0056550:CDS 40.0%
CATACAATGTTATTCCCCCA+TGG - chr1_2:12194947-12194966 None:intergenic 40.0%
CATGGGGGAATAACATTGTA+TGG + chr1_2:12194945-12194964 Msa0056550:CDS 40.0%
! ACTCAGAATCCAAAGCACTA+TGG - chr1_2:12195021-12195040 None:intergenic 40.0%
! AGTGCTTTGGATTCTGAGTA+AGG + chr1_2:12195022-12195041 Msa0056550:CDS 40.0%
! AAAGCCTTGTATATGAGCCA+AGG + chr1_2:12195093-12195112 Msa0056550:three_prime_UTR 40.0%
CATTCCTTGGCTCATATACA+AGG - chr1_2:12195100-12195119 None:intergenic 40.0%
! TGTGTTGTTGCTGTTGCTGT+TGG - chr1_2:12192827-12192846 None:intergenic 45.0%
ATGATGGCAAGTGCAGATTC+AGG - chr1_2:12193098-12193117 None:intergenic 45.0%
GAAACGGTAGAGAGTGAAGA+AGG - chr1_2:12193123-12193142 None:intergenic 45.0%
CCCCTAAAAAAATGGTGTCC+TGG + chr1_2:12193452-12193471 Msa0056550:intron 45.0%
!!! GCCCAGGACACCATTTTTTT+AGG - chr1_2:12193457-12193476 None:intergenic 45.0%
TATGATGCAGGTATGGCCTA+AGG + chr1_2:12193541-12193560 Msa0056550:intron 45.0%
GACACTACATATGTTCGTCG+CGG + chr1_2:12193594-12193613 Msa0056550:CDS 45.0%
! TGAATGCTTTCTCTAGCTCG+CGG - chr1_2:12193626-12193645 None:intergenic 45.0%
GGAAATCCAGCACTAAGGTT+TGG - chr1_2:12193735-12193754 None:intergenic 45.0%
CTTTCATGGCTGTACAGAAC+TGG + chr1_2:12193786-12193805 Msa0056550:CDS 45.0%
!! CACAAGCTTTTTGAAGGGTG+TGG + chr1_2:12193879-12193898 Msa0056550:CDS 45.0%
CTTCAATTCTGGTGACCTTG+TGG + chr1_2:12194067-12194086 Msa0056550:CDS 45.0%
TGTTCAGCAGTGCAATTGAG+TGG + chr1_2:12194249-12194268 Msa0056550:CDS 45.0%
GGCTTCTTCTTGTGCATCTT+AGG + chr1_2:12194270-12194289 Msa0056550:CDS 45.0%
TGCAACAAGATGGCACATGT+TGG + chr1_2:12194335-12194354 Msa0056550:CDS 45.0%
GAAAGGAAGAGAGTCTCTGT+GGG - chr1_2:12194467-12194486 None:intergenic 45.0%
TGAAAGGAAGAGAGTCTCTG+TGG - chr1_2:12194468-12194487 None:intergenic 45.0%
CCCATGGTTGTGTTGTAGAT+AGG - chr1_2:12194931-12194950 None:intergenic 45.0%
TATGGGTTTGCACTTGATCG+AGG + chr1_2:12194963-12194982 Msa0056550:CDS 45.0%
! GCTTTGGATTCTGAGTAAGG+TGG + chr1_2:12195025-12195044 Msa0056550:CDS 45.0%
CTCTCTACCGTTTCTTCCGA+AGG + chr1_2:12193129-12193148 Msa0056550:CDS 50.0%
ATTGTGATCACAGCTAGGGC+CGG + chr1_2:12193218-12193237 Msa0056550:intron 50.0%
GGCACCAAGAATCTTAGGAC+CGG - chr1_2:12193240-12193259 None:intergenic 50.0%
! CCTAGGGCACCAAGAATCTT+AGG - chr1_2:12193245-12193264 None:intergenic 50.0%
!! CCTAAGATTCTTGGTGCCCT+AGG + chr1_2:12193242-12193261 Msa0056550:intron 50.0%
GTAACTTAGGGTAGCCCTGA+GGG - chr1_2:12193498-12193517 None:intergenic 50.0%
TGTAACTTAGGGTAGCCCTG+AGG - chr1_2:12193499-12193518 None:intergenic 50.0%
! GAATGCTTTCTCTAGCTCGC+GGG - chr1_2:12193625-12193644 None:intergenic 50.0%
TCAGCACCAAACCTTAGTGC+TGG + chr1_2:12193726-12193745 Msa0056550:CDS 50.0%
AGGGCCGGTCCTAAGATTCT+TGG + chr1_2:12193233-12193252 Msa0056550:intron 55.0%
! GAAGGGTGTGGATCAGAAGC+AGG + chr1_2:12193891-12193910 Msa0056550:CDS 55.0%
CTTAGGGTAGCCCTGAGGGT+GGG - chr1_2:12193494-12193513 None:intergenic 60.0%
ACTTAGGGTAGCCCTGAGGG+TGG - chr1_2:12193495-12193514 None:intergenic 60.0%
AGGGTAGCCCTGAGGGTGGG+CGG - chr1_2:12193491-12193510 None:intergenic 70.0%
AGCCCTGAGGGTGGGCGGGA+GGG - chr1_2:12193486-12193505 None:intergenic 75.0%
TAGCCCTGAGGGTGGGCGGG+AGG - chr1_2:12193487-12193506 None:intergenic 75.0%
GGGTAGCCCTGAGGGTGGGC+GGG - chr1_2:12193490-12193509 None:intergenic 75.0%
! CTGAGGGTGGGCGGGAGGGG+CGG - chr1_2:12193482-12193501 None:intergenic 80.0%
! GCCCCTCCCGCCCACCCTCA+GGG + chr1_2:12193481-12193500 Msa0056550:intron 80.0%
! GCCCTGAGGGTGGGCGGGAG+GGG - chr1_2:12193485-12193504 None:intergenic 80.0%
! CGCCCCTCCCGCCCACCCTC+AGG + chr1_2:12193480-12193499 Msa0056550:intron 85.0%
! GGCGGGAGGGGCGGCAGCCC+AGG - chr1_2:12193473-12193492 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 12192614 12195248 12192614 ID=Msa0056550;Name=Msa0056550
chr1_2 mRNA 12192614 12195248 12192614 ID=Msa0056550-mRNA-1;Parent=Msa0056550;Name=Msa0056550-mRNA-1;_AED=0.01;_eAED=0.01;_QI=130|1|1|1|1|1|4|187|446
chr1_2 exon 12192614 12193150 12192614 ID=Msa0056550-mRNA-1:exon:4705;Parent=Msa0056550-mRNA-1
chr1_2 exon 12193551 12194088 12193551 ID=Msa0056550-mRNA-1:exon:4706;Parent=Msa0056550-mRNA-1
chr1_2 exon 12194246 12194504 12194246 ID=Msa0056550-mRNA-1:exon:4707;Parent=Msa0056550-mRNA-1
chr1_2 exon 12194925 12195248 12194925 ID=Msa0056550-mRNA-1:exon:4708;Parent=Msa0056550-mRNA-1
chr1_2 five_prime_UTR 12192614 12192743 12192614 ID=Msa0056550-mRNA-1:five_prime_utr;Parent=Msa0056550-mRNA-1
chr1_2 CDS 12192744 12193150 12192744 ID=Msa0056550-mRNA-1:cds;Parent=Msa0056550-mRNA-1
chr1_2 CDS 12193551 12194088 12193551 ID=Msa0056550-mRNA-1:cds;Parent=Msa0056550-mRNA-1
chr1_2 CDS 12194246 12194504 12194246 ID=Msa0056550-mRNA-1:cds;Parent=Msa0056550-mRNA-1
chr1_2 CDS 12194925 12195061 12194925 ID=Msa0056550-mRNA-1:cds;Parent=Msa0056550-mRNA-1
chr1_2 three_prime_UTR 12195062 12195248 12195062 ID=Msa0056550-mRNA-1:three_prime_utr;Parent=Msa0056550-mRNA-1
Gene Sequence

>Msa0056550

ATGAAACCTTCAACAGAATCAACCAAGGACACAACCATTAACATTGATAATTCCTCTTCCAAAAGAGTATCTTTCTCTGACCAACAGCAACAGCAACAACACAGTGTTCCTTTGTTACTTCAACCATCTTATGCAAGATCAAAATCCATGATCTTTGATGAACTAAGAAACTTTCGGATATGCCTTAAATGGTGTGCTCTTGATCACTCATCTTGTGTTGGAAAACTCATCTCTTACGTTTCCTTCATCTTCCTCACTTTCATTGTTCCTCTCTTCACAACCCTATTTGTTCAAGTATCTGCTTCTTCTCCTGAAGTTGATCCTATCTCCTTGAACAAGCTTGTTCAAATACCTGAATCTGCACTTGCCATCATTTCCTTCTTCACTCTCTACCGTTTCTTCCGAAGGTATGGCCTAAGGCAACTTCTATTCTTAGATGCATTGCAAGATGACACTACATATGTTCGTCGCGGCTACGCCCGCGAGCTAGAGAAAGCATTCAGATACTTAGCATACATAATCCTACCTTCTTTCTTTGTAGAACTTGCACACAAAATCATATTCTTCTCAGCAGTTAAAATTTCAGCACCAAACCTTAGTGCTGGATTTCCAATACACTCAATTGTGTTTGTATTTATGTTACTTTCATGGCTGTACAGAACTGGAGTGTACTTGTTAGTATGTGTTATTTTCAAATTAACTTGCCAGCTTCAAATATTGAGATTTGAAGGTGTTCACAAGCTTTTTGAAGGGTGTGGATCAGAAGCAGGTGTTATATTTAAGGAACATGTGAGGATTAGAAGGCAATTATGGATTATAAGTCATAGGTATAGATTCTTTATAATCTGTTGTGTGGTTACAATGAGTGTTAGTCAATTGGGTTCTCTATTGCTAGTTTTGGCTTCTAAGTCAGAGAAGACATTCTTCAATTCTGGTGACCTTGTGATATGTTCAGCAGTGCAATTGAGTGGCTTCTTCTTGTGCATCTTAGGTGCTGCAAAAATCACACATAGAGCTCAAGGAATTGTTTCAATTGCAACAAGATGGCACATGTTGGTGACTAATGCTTCTGCTGAATCAGAGCAATGCAAAGATGATATGTCTGAAGCTCTAGCCAGTGATAGTAGTGATTCTGATTCCTCAGACATACATATATCAATAATCCCACAGAGACTCTCTTCCTTTCAGACTAGACAATCTTTAGTGACCTATCTACAACACAACCATGGGGGAATAACATTGTATGGGTTTGCACTTGATCGAGGAATGCTTCATACTCTATTTGCATTTGAATTCTCCATAGTGCTTTGGATTCTGAGTAAGGTGGTTGTCTTAGAATAA

Protein sequence

>Msa0056550

MKPSTESTKDTTINIDNSSSKRVSFSDQQQQQQHSVPLLLQPSYARSKSMIFDELRNFRICLKWCALDHSSCVGKLISYVSFIFLTFIVPLFTTLFVQVSASSPEVDPISLNKLVQIPESALAIISFFTLYRFFRRYGLRQLLFLDALQDDTTYVRRGYARELEKAFRYLAYIILPSFFVELAHKIIFFSAVKISAPNLSAGFPIHSIVFVFMLLSWLYRTGVYLLVCVIFKLTCQLQILRFEGVHKLFEGCGSEAGVIFKEHVRIRRQLWIISHRYRFFIICCVVTMSVSQLGSLLLVLASKSEKTFFNSGDLVICSAVQLSGFFLCILGAAKITHRAQGIVSIATRWHMLVTNASAESEQCKDDMSEALASDSSDSDSSDIHISIIPQRLSSFQTRQSLVTYLQHNHGGITLYGFALDRGMLHTLFAFEFSIVLWILSKVVVLE*