Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0008140 | sp|F4KFS5|GMI1_ARATH | 36.119 | 371 | 233 | 3 | 194 | 561 | 847 | 1216 | 7.71e-66 | 244 |
| Msa0008140 | sp|F4KFS5|GMI1_ARATH | 44.298 | 228 | 124 | 3 | 2 | 227 | 517 | 743 | 2.37e-53 | 206 |
| Msa0008140 | sp|F4KFS5|GMI1_ARATH | 37.543 | 293 | 163 | 7 | 598 | 884 | 1312 | 1590 | 2.80e-44 | 178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008080 | Msa0008140 | 0.839949 | 1.166975e-57 | -8.615850e-47 |
| Msa0008140 | Msa0015090 | 0.812446 | 4.221946e-51 | -8.615850e-47 |
| Msa0008140 | Msa0049750 | 0.821536 | 3.831544e-53 | -8.615850e-47 |
| Msa0008140 | Msa0057500 | 0.804515 | 2.082116e-49 | -8.615850e-47 |
| Msa0008140 | Msa0103030 | 0.872446 | 3.161698e-67 | -8.615850e-47 |
| Msa0008140 | Msa0487310 | 0.896742 | 2.755277e-76 | -8.615850e-47 |
| Msa0008140 | Msa0763920 | 0.803023 | 4.248031e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0008140 | MtrunA17_Chr1g0147011 | 68.635 | 982 | 218 | 14 | 4 | 913 | 499 | 1462 | 0.0 | 1300 |
| Msa0008140 | MtrunA17_Chr1g0146991 | 88.384 | 594 | 31 | 2 | 357 | 913 | 1 | 593 | 0.0 | 1046 |
| Msa0008140 | MtrunA17_Chr1g0146971 | 95.890 | 146 | 5 | 1 | 1 | 146 | 1 | 145 | 2.59e-94 | 293 |
| Msa0008140 | MtrunA17_Chr1g0146981 | 88.889 | 144 | 16 | 0 | 214 | 357 | 2 | 145 | 1.58e-84 | 267 |
| Msa0008140 | MtrunA17_Chr7g0275811 | 44.980 | 249 | 132 | 5 | 599 | 843 | 92 | 339 | 8.16e-63 | 217 |
| Msa0008140 | MtrunA17_Chr3g0126881 | 35.920 | 348 | 189 | 8 | 582 | 904 | 90 | 428 | 6.16e-58 | 205 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0008140 | AT5G24275.2 | 34.082 | 534 | 265 | 10 | 310 | 786 | 99 | 602 | 3.21e-82 | 277 |
| Msa0008140 | AT5G24275.1 | 34.082 | 534 | 265 | 10 | 310 | 786 | 304 | 807 | 1.26e-80 | 278 |
| Msa0008140 | AT5G24280.2 | 36.119 | 371 | 233 | 3 | 194 | 561 | 815 | 1184 | 5.48e-67 | 245 |
| Msa0008140 | AT5G24280.2 | 44.298 | 228 | 124 | 3 | 2 | 227 | 485 | 711 | 1.98e-54 | 206 |
| Msa0008140 | AT5G24280.2 | 37.543 | 293 | 163 | 7 | 598 | 884 | 1280 | 1558 | 3.52e-45 | 177 |
| Msa0008140 | AT5G24280.3 | 36.119 | 371 | 233 | 3 | 194 | 561 | 815 | 1184 | 5.48e-67 | 245 |
| Msa0008140 | AT5G24280.3 | 44.298 | 228 | 124 | 3 | 2 | 227 | 485 | 711 | 1.98e-54 | 206 |
| Msa0008140 | AT5G24280.3 | 37.543 | 293 | 163 | 7 | 598 | 884 | 1280 | 1558 | 3.52e-45 | 177 |
| Msa0008140 | AT5G24280.1 | 36.119 | 371 | 233 | 3 | 194 | 561 | 847 | 1216 | 7.84e-67 | 244 |
| Msa0008140 | AT5G24280.1 | 44.298 | 228 | 124 | 3 | 2 | 227 | 517 | 743 | 2.41e-54 | 206 |
| Msa0008140 | AT5G24280.1 | 37.543 | 293 | 163 | 7 | 598 | 884 | 1312 | 1590 | 2.85e-45 | 178 |
| Msa0008140 | AT5G24275.3 | 33.626 | 455 | 215 | 10 | 389 | 786 | 6 | 430 | 9.32e-67 | 230 |
| Msa0008140 | AT5G24275.4 | 33.626 | 455 | 215 | 10 | 389 | 786 | 6 | 430 | 9.32e-67 | 230 |
| Msa0008140 | AT3G49250.1 | 43.111 | 225 | 123 | 3 | 601 | 821 | 116 | 339 | 2.85e-51 | 186 |
Find 164 sgRNAs with CRISPR-Local
Find 446 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAACTCCTGCCTGAATTT+TGG | 0.154170 | 1_1:+11785635 | None:intergenic |
| CAAAAGGTCCCCTCAATTTC+TGG | 0.157458 | 1_1:+11785268 | None:intergenic |
| CACTTCTTGGAAGATATAAT+TGG | 0.178304 | 1_1:-11784025 | Msa0008140:CDS |
| ATACCTTGCCATCGCTATTT+AGG | 0.211106 | 1_1:+11785002 | None:intergenic |
| GAGAACGCCAGAAGGCTTTA+TGG | 0.220992 | 1_1:-11783155 | Msa0008140:CDS |
| GAACTCTTTCTCTTGGCTTT+GGG | 0.273909 | 1_1:-11782931 | Msa0008140:intron |
| TTCTTCAAAGCAATGGTAAA+AGG | 0.274323 | 1_1:+11790726 | None:intergenic |
| TCGGTGTCGATCACGCTTAT+AGG | 0.275828 | 1_1:+11789254 | None:intergenic |
| CGTGGAGGTTAATATTCTTT+TGG | 0.285939 | 1_1:-11786253 | Msa0008140:CDS |
| GTGTTAAGGGGAGCATGTTC+AGG | 0.289144 | 1_1:-11790041 | Msa0008140:CDS |
| GGAACTCTTTCTCTTGGCTT+TGG | 0.301870 | 1_1:-11782932 | Msa0008140:CDS |
| GGGTGTTATTTGTAGATCTT+TGG | 0.303791 | 1_1:-11783559 | Msa0008140:CDS |
| TTCAACATTTGCGTAGCTTC+TGG | 0.316994 | 1_1:+11782269 | None:intergenic |
| GGCGGCATTATAAGAGAAAA+TGG | 0.319270 | 1_1:-11782953 | Msa0008140:CDS |
| AGTTGGTCTTCTCTTATATT+AGG | 0.324131 | 1_1:+11787382 | None:intergenic |
| CTAAAGTTAACAGCAGGTTT+TGG | 0.328837 | 1_1:-11785979 | Msa0008140:CDS |
| TCATATGCTTACAATTAAAT+CGG | 0.329243 | 1_1:-11785365 | Msa0008140:CDS |
| TTACTACTGAAGATTGAAAA+AGG | 0.334720 | 1_1:-11782224 | Msa0008140:CDS |
| TTCTCCTCTGGGATATCTAT+TGG | 0.340662 | 1_1:+11789344 | None:intergenic |
| CCGATCCAAAGTTATCAAAT+AGG | 0.350635 | 1_1:-11783177 | Msa0008140:CDS |
| TACCATTGCTTTGAAGAACT+TGG | 0.366945 | 1_1:-11790721 | Msa0008140:CDS |
| AAGCAATGGTAAAAGGATTC+TGG | 0.367642 | 1_1:+11790733 | None:intergenic |
| AAAGCAACAGAATCACTTCT+TGG | 0.370458 | 1_1:-11784038 | Msa0008140:CDS |
| AAGAGAAGACCAACTACTTC+CGG | 0.372390 | 1_1:-11787374 | Msa0008140:CDS |
| GGTGGATTGACAACTATAAC+TGG | 0.373256 | 1_1:+11790447 | None:intergenic |
| ACTTCTTGGAAGATATAATT+GGG | 0.379257 | 1_1:-11784024 | Msa0008140:CDS |
| AGAACGCCAGAAGGCTTTAT+GGG | 0.383529 | 1_1:-11783154 | Msa0008140:CDS |
| GATCTACAGGTAGATGATAA+AGG | 0.383791 | 1_1:-11786024 | Msa0008140:intron |
| GAAAATGGAACTCTTTCTCT+TGG | 0.387527 | 1_1:-11782938 | Msa0008140:CDS |
| ATGCCAAGTGCTTCCTTGTT+CGG | 0.389709 | 1_1:+11790426 | None:intergenic |
| GCATTTCTAATATCCATTCA+TGG | 0.392415 | 1_1:+11790511 | None:intergenic |
| TGCTAGACTTAGGAGATTGA+TGG | 0.394563 | 1_1:-11782061 | None:intergenic |
| TAAGAGTTGATAGTTCCTTC+AGG | 0.395269 | 1_1:+11785053 | None:intergenic |
| TTTGACGACATTTGCCAACT+TGG | 0.396807 | 1_1:-11784670 | Msa0008140:intron |
| ACCTTCGAACATAACAGATA+TGG | 0.401978 | 1_1:+11785661 | None:intergenic |
| ATTTCTGGAACACGAATAGA+TGG | 0.403991 | 1_1:+11785283 | None:intergenic |
| AGCATAGATGTCCCAATCTC+TGG | 0.404047 | 1_1:+11782080 | None:intergenic |
| TAATTGTAAGCATATGAAAC+TGG | 0.404903 | 1_1:+11785371 | None:intergenic |
| TCGAAGGTAAACCAAAATTC+AGG | 0.410501 | 1_1:-11785646 | Msa0008140:CDS |
| TGAAGAGAAAGGAGAAGTCT+TGG | 0.412538 | 1_1:-11790085 | Msa0008140:CDS |
| TTCAGAATCCTGAGCTTAGC+AGG | 0.415233 | 1_1:-11783979 | Msa0008140:intron |
| GCATAACCCATAAAGCCTTC+TGG | 0.415293 | 1_1:+11783148 | None:intergenic |
| TGACGTGACTGTTGAACTTC+AGG | 0.416376 | 1_1:-11787802 | Msa0008140:CDS |
| ATTGGGGTCGTTGCCCTCCT+TGG | 0.419077 | 1_1:-11784007 | Msa0008140:CDS |
| CTATTTGATAACTTTGGATC+GGG | 0.419959 | 1_1:+11783178 | None:intergenic |
| AGAGCGCACCCATTCTCCTC+TGG | 0.422918 | 1_1:+11789332 | None:intergenic |
| GAAAACCCCACCTTGAATAT+CGG | 0.428209 | 1_1:-11789293 | Msa0008140:CDS |
| TGTAGTCATTTCTTCTTTGG+TGG | 0.431659 | 1_1:+11784120 | None:intergenic |
| TTGGAACAAAATCCAGAGAT+TGG | 0.433347 | 1_1:-11782092 | Msa0008140:CDS |
| AATGATTACAAGTAGTGAAT+TGG | 0.434890 | 1_1:-11787617 | Msa0008140:CDS |
| GCTGCTGAAGCAGCTAATCT+TGG | 0.436687 | 1_1:-11783471 | Msa0008140:CDS |
| AATGGTGCTGTATCATTAGA+TGG | 0.437239 | 1_1:-11782974 | Msa0008140:CDS |
| TTTCAAGGAGTTAGCGTTTG+AGG | 0.438649 | 1_1:-11787344 | Msa0008140:intron |
| TGTTCCAATGCCTCAGCAAA+AGG | 0.439517 | 1_1:+11782107 | None:intergenic |
| AATCAAAGTAGTTCTATAGC+TGG | 0.442718 | 1_1:+11787582 | None:intergenic |
| TGAAGTCATTAGAGTTCATC+GGG | 0.443438 | 1_1:-11790111 | Msa0008140:intron |
| ACAAGGACAGCATCGGGCCA+TGG | 0.446135 | 1_1:-11783088 | Msa0008140:CDS |
| CATATGCTTACAATTAAATC+GGG | 0.450609 | 1_1:-11785364 | Msa0008140:CDS |
| GTTCTCCTATTTGATAACTT+TGG | 0.452254 | 1_1:+11783172 | None:intergenic |
| AAACATGGAGCTTCTTGAAA+AGG | 0.455518 | 1_1:+11783041 | None:intergenic |
| AGAGAAGACCAACTACTTCC+GGG | 0.458345 | 1_1:-11787373 | Msa0008140:CDS |
| AGTCATTTCTTCTTTGGTGG+TGG | 0.469132 | 1_1:+11784123 | None:intergenic |
| TAGAACAAGAATACCATGAA+TGG | 0.469842 | 1_1:-11790524 | Msa0008140:CDS |
| CTGTCCTTGTCTCTAGGTGA+TGG | 0.479142 | 1_1:+11783101 | None:intergenic |
| TATTCGTGTTCCAGAAATTG+AGG | 0.479757 | 1_1:-11785278 | Msa0008140:CDS |
| ACCATTGCTTTGAAGAACTT+GGG | 0.479885 | 1_1:-11790720 | Msa0008140:CDS |
| GCACTTGGCATTTCTGAAGA+TGG | 0.483183 | 1_1:-11790414 | Msa0008140:intron |
| AGTTCAACAGTCACGTCATC+CGG | 0.483607 | 1_1:+11787807 | None:intergenic |
| TAGATATCCCAGAGGAGAAT+GGG | 0.487516 | 1_1:-11789340 | Msa0008140:CDS |
| CAAGGACAGCATCGGGCCAT+GGG | 0.488337 | 1_1:-11783087 | Msa0008140:CDS |
| ATGAGAAGCTTCAAAGCAAA+AGG | 0.489261 | 1_1:+11785252 | None:intergenic |
| TTTGAAATTGTCAATGCTGA+TGG | 0.489566 | 1_1:-11785433 | Msa0008140:CDS |
| CCTATTTGATAACTTTGGAT+CGG | 0.489733 | 1_1:+11783177 | None:intergenic |
| TCATTTGACAGGCCATATGA+TGG | 0.491198 | 1_1:-11783238 | Msa0008140:intron |
| GTGAAGTCATTAGAGTTCAT+CGG | 0.496698 | 1_1:-11790112 | Msa0008140:intron |
| CCGATGCTGTCCTTGTCTCT+AGG | 0.498998 | 1_1:+11783095 | None:intergenic |
| TGGAACAAAATCCAGAGATT+GGG | 0.504538 | 1_1:-11782091 | Msa0008140:CDS |
| CCAAGTGCTTCCTTGTTCGG+TGG | 0.505892 | 1_1:+11790429 | None:intergenic |
| AAGCGTGATCGACACCGAAA+AGG | 0.506735 | 1_1:-11789249 | Msa0008140:intron |
| TGTTAAGGGGAGCATGTTCA+GGG | 0.508251 | 1_1:-11790040 | Msa0008140:CDS |
| AAGAGTTGATAGTTCCTTCA+GGG | 0.511517 | 1_1:+11785054 | None:intergenic |
| GGGACATCTATGCTAGACTT+AGG | 0.511744 | 1_1:-11782071 | Msa0008140:CDS |
| AAGGAGAAGTCTTGGAGTCA+TGG | 0.515142 | 1_1:-11790077 | Msa0008140:CDS |
| TGAGCTAAATCCGTCTGAAA+AGG | 0.516598 | 1_1:+11790756 | None:intergenic |
| AGAATGTTAGCGGAATATCT+TGG | 0.519099 | 1_1:-11783597 | Msa0008140:CDS |
| CAAAGAGCTACCGATATTCA+AGG | 0.519740 | 1_1:+11789283 | None:intergenic |
| TTGTGCAACATCTTTCGCAT+TGG | 0.520629 | 1_1:+11785105 | None:intergenic |
| CAAAACAAGCAAGAGTATGA+TGG | 0.521624 | 1_1:-11783017 | Msa0008140:CDS |
| GACTTGTATTTCAAAGTGCA+TGG | 0.525063 | 1_1:-11787771 | Msa0008140:CDS |
| TGAAACGTATTCATTGTGCT+TGG | 0.527904 | 1_1:-11788107 | Msa0008140:CDS |
| AATGTCAAGAGCTTGATGTC+AGG | 0.535452 | 1_1:-11788059 | Msa0008140:intron |
| ATCAAAGTAGTTCTATAGCT+GGG | 0.536927 | 1_1:+11787583 | None:intergenic |
| ATAGATATCCCAGAGGAGAA+TGG | 0.537558 | 1_1:-11789341 | Msa0008140:CDS |
| GTCATAACATGCAATGGCTA+AGG | 0.538290 | 1_1:+11787863 | None:intergenic |
| AAATGAAACCCGGAAGTAGT+TGG | 0.542686 | 1_1:+11787365 | None:intergenic |
| TAAACGGAGCTCGACTGTCA+TGG | 0.542955 | 1_1:+11787838 | None:intergenic |
| GAGCGCACCCATTCTCCTCT+GGG | 0.543360 | 1_1:+11789333 | None:intergenic |
| ATTCGTGTTCCAGAAATTGA+GGG | 0.543848 | 1_1:-11785277 | Msa0008140:CDS |
| TCGATTCATCTGCATTAGAA+AGG | 0.544560 | 1_1:+11785341 | None:intergenic |
| CACGGAAAAGATACTGAAAA+CGG | 0.545180 | 1_1:+11787541 | None:intergenic |
| TCCATATCTGTTATGTTCGA+AGG | 0.546516 | 1_1:-11785662 | Msa0008140:CDS |
| GAGAAGCTCGGATCATATGC+AGG | 0.547744 | 1_1:-11789462 | Msa0008140:intron |
| CTAGAGACAAGGACAGCATC+GGG | 0.549880 | 1_1:-11783094 | Msa0008140:CDS |
| TCTTGGTGAAGATCAAATGC+TGG | 0.550642 | 1_1:-11783580 | Msa0008140:CDS |
| CATTTGACAGGCCATATGAT+GGG | 0.556751 | 1_1:-11783237 | Msa0008140:intron |
| GCCCAAGTTCTTCAAAGCAA+TGG | 0.557865 | 1_1:+11790719 | None:intergenic |
| TAACATGCAATGGCTAAGGA+TGG | 0.558634 | 1_1:+11787867 | None:intergenic |
| ATCTCTGTCCTAAATAGCGA+TGG | 0.559140 | 1_1:-11785010 | Msa0008140:CDS |
| AGCTACCGATATTCAAGGTG+GGG | 0.559208 | 1_1:+11789288 | None:intergenic |
| CCTCCACGCCTTCAGACACA+TGG | 0.567717 | 1_1:+11786268 | None:intergenic |
| CCTAGAGACAAGGACAGCAT+CGG | 0.567982 | 1_1:-11783095 | Msa0008140:CDS |
| TGTCCTTGTCTCTAGGTGAT+GGG | 0.568195 | 1_1:+11783102 | None:intergenic |
| TATTCTTGTTCTATTTGTGA+AGG | 0.568352 | 1_1:+11790534 | None:intergenic |
| AAACCATGTGTCTGAAGGCG+TGG | 0.569571 | 1_1:-11786271 | Msa0008140:CDS |
| CCACCGAACAAGGAAGCACT+TGG | 0.570708 | 1_1:-11790429 | Msa0008140:CDS |
| GTAGTGAATTGGACAAGATA+AGG | 0.573215 | 1_1:-11787606 | Msa0008140:CDS |
| TGCAATGGCTAAGGATGGAA+AGG | 0.573670 | 1_1:+11787872 | None:intergenic |
| CTTGAAAAGGCTAAATAGAA+CGG | 0.573892 | 1_1:+11783054 | None:intergenic |
| AGTTGTCAATCCACCGAACA+AGG | 0.578580 | 1_1:-11790439 | Msa0008140:CDS |
| TCATCGGGTTCTGAAGAGAA+AGG | 0.580117 | 1_1:-11790096 | Msa0008140:CDS |
| TTGACAAACCTGCTAAGCTC+AGG | 0.581495 | 1_1:+11783971 | None:intergenic |
| AACATTTGCGTAGCTTCTGG+AGG | 0.585146 | 1_1:+11782272 | None:intergenic |
| GAGCTACCGATATTCAAGGT+GGG | 0.585504 | 1_1:+11789287 | None:intergenic |
| GGTCAACTAAAGTTAACAGC+AGG | 0.589570 | 1_1:-11785985 | Msa0008140:CDS |
| GCTATTGAATGTATAGAGAA+TGG | 0.595546 | 1_1:-11782992 | Msa0008140:CDS |
| CCACAAGGAAAATATATGCA+AGG | 0.599117 | 1_1:+11782311 | None:intergenic |
| AGGTAAACCAAAATTCAGGC+AGG | 0.600747 | 1_1:-11785642 | Msa0008140:CDS |
| TAATTGCAGTACTGTATACA+AGG | 0.601251 | 1_1:-11786211 | Msa0008140:intron |
| TGACATCAAGCTCTTGACAT+TGG | 0.603498 | 1_1:+11788061 | None:intergenic |
| CTAATGCAGATGAATCGATA+CGG | 0.604094 | 1_1:-11785336 | Msa0008140:CDS |
| TATAGAAACCATGTGTCTGA+AGG | 0.607775 | 1_1:-11786276 | Msa0008140:CDS |
| AAAATTTCAGATAAACAGAC+CGG | 0.608599 | 1_1:-11790693 | Msa0008140:intron |
| TTAGCATATTCGAGATAACC+AGG | 0.610969 | 1_1:+11787412 | None:intergenic |
| TATGATGACGAAGCTGATGC+CGG | 0.618739 | 1_1:-11790480 | Msa0008140:CDS |
| TGTTGCACAACATCTATCCC+CGG | 0.620409 | 1_1:-11785092 | Msa0008140:CDS |
| TGTCCTAAATAGCGATGGCA+AGG | 0.625120 | 1_1:-11785005 | Msa0008140:intron |
| ATTCTGAACAGAACCAAGGA+GGG | 0.629386 | 1_1:+11783994 | None:intergenic |
| AACTCCTTGAAAATGAAACC+CGG | 0.629390 | 1_1:+11787355 | None:intergenic |
| GAACGGTCTCACGAAGCCCA+TGG | 0.630143 | 1_1:+11783071 | None:intergenic |
| ATATCCATCTTGCTCCCACA+AGG | 0.630443 | 1_1:+11782296 | None:intergenic |
| AATCTTGCGAATCGCATCTG+AGG | 0.630729 | 1_1:-11785600 | Msa0008140:intron |
| TCAAATAGGAGAACGCCAGA+AGG | 0.635926 | 1_1:-11783163 | Msa0008140:CDS |
| TGTTTCCGTCAAAATTAGCA+CGG | 0.639859 | 1_1:-11790574 | Msa0008140:CDS |
| AGAGCTGTGTCTGACTGCAA+AGG | 0.640595 | 1_1:-11785218 | Msa0008140:intron |
| CAATCAAAATCACCTCGACA+CGG | 0.641182 | 1_1:+11787523 | None:intergenic |
| TATAACTGGCTTATCCTCAC+CGG | 0.643304 | 1_1:+11790461 | None:intergenic |
| TTCGTGTTCCAGAAATTGAG+GGG | 0.644094 | 1_1:-11785276 | Msa0008140:CDS |
| CCATGTGTCTGAAGGCGTGG+AGG | 0.644668 | 1_1:-11786268 | Msa0008140:CDS |
| ATGGATGTCATAACATGCAA+TGG | 0.648753 | 1_1:+11787857 | None:intergenic |
| AGAGTTGATAGTTCCTTCAG+GGG | 0.649868 | 1_1:+11785055 | None:intergenic |
| CTTGGTGAAGATCAAATGCT+GGG | 0.652340 | 1_1:-11783579 | Msa0008140:CDS |
| GAGTTGATAGTTCCTTCAGG+GGG | 0.653915 | 1_1:+11785056 | None:intergenic |
| CTTCTTGGAAGATATAATTG+GGG | 0.656471 | 1_1:-11784023 | Msa0008140:CDS |
| AGAGCTACCGATATTCAAGG+TGG | 0.670984 | 1_1:+11789286 | None:intergenic |
| GGTGGTGGCAAACAACAAGT+CGG | 0.673922 | 1_1:+11784138 | None:intergenic |
| GATTCTGAACAGAACCAAGG+AGG | 0.680382 | 1_1:+11783993 | None:intergenic |
| CAGGATTCTGAACAGAACCA+AGG | 0.684171 | 1_1:+11783990 | None:intergenic |
| ATTCCCATCACCTAGAGACA+AGG | 0.688226 | 1_1:-11783105 | Msa0008140:CDS |
| ATTCAGGAATCTTACCACCC+AGG | 0.699327 | 1_1:+11789955 | None:intergenic |
| TGACGAAGCTGATGCCGGTG+AGG | 0.712253 | 1_1:-11790475 | Msa0008140:CDS |
| GGGGAAAGTATTCTTATCCG+GGG | 0.712971 | 1_1:+11785075 | None:intergenic |
| CACGTGCAGAGAGACTACAT+AGG | 0.722422 | 1_1:+11784062 | None:intergenic |
| GGTGCTGTATCATTAGATGG+CGG | 0.731976 | 1_1:-11782971 | Msa0008140:CDS |
| CAGGCCAATAGATATCCCAG+AGG | 0.793787 | 1_1:-11789348 | Msa0008140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTATATTAATTATTTACAT+GGG | + | chr1_1:11784209-11784228 | None:intergenic | 10.0% |
| !! | ATGTATATTAATTATTTACA+TGG | + | chr1_1:11784210-11784229 | None:intergenic | 10.0% |
| !!! | TAAAATGACTTTAAAAATTA+TGG | - | chr1_1:11785099-11785118 | Msa0008140:CDS | 10.0% |
| !! | CAAATAAATCTTAAAATATT+TGG | + | chr1_1:11785793-11785812 | None:intergenic | 10.0% |
| !!! | ATATTTTAAGATTTATTTGT+TGG | - | chr1_1:11785794-11785813 | Msa0008140:intron | 10.0% |
| !!! | TATTTTAAGATTTATTTGTT+GGG | - | chr1_1:11785795-11785814 | Msa0008140:intron | 10.0% |
| !! | AAATAGTAATAAAAAAGAAA+AGG | - | chr1_1:11786110-11786129 | Msa0008140:intron | 10.0% |
| !! | ATCAAATTTAAATTTATAAC+AGG | + | chr1_1:11786255-11786274 | None:intergenic | 10.0% |
| !! | AAATTCATGATATAAATTTA+AGG | - | chr1_1:11787920-11787939 | Msa0008140:intron | 10.0% |
| !! | TAAACTTATGAATGTATTAA+AGG | + | chr1_1:11782561-11782580 | None:intergenic | 15.0% |
| !!! | ACAAAAAATAAAAGTGTTAA+GGG | - | chr1_1:11782769-11782788 | Msa0008140:intron | 15.0% |
| !! | ATTATAAAAAGAAAGAGAAA+AGG | + | chr1_1:11782917-11782936 | None:intergenic | 15.0% |
| !! | TTTATATTCTATTTCATTCT+AGG | + | chr1_1:11782942-11782961 | None:intergenic | 15.0% |
| !! | TAGAATGAAATAGAATATAA+AGG | - | chr1_1:11782941-11782960 | Msa0008140:CDS | 15.0% |
| !! | TAATATTGAATGATATGAAA+TGG | + | chr1_1:11783074-11783093 | None:intergenic | 15.0% |
| !! | TATTAATAAGTGAAAAAAAG+TGG | - | chr1_1:11783133-11783152 | Msa0008140:CDS | 15.0% |
| !!! | ATAAGAAAAAAGAGTAATTT+TGG | - | chr1_1:11783189-11783208 | Msa0008140:CDS | 15.0% |
| !!! | TGTTGTATATTTGTTTTATA+CGG | - | chr1_1:11783605-11783624 | Msa0008140:intron | 15.0% |
| !! | ATCAAATCATAACAAATATT+TGG | + | chr1_1:11783884-11783903 | None:intergenic | 15.0% |
| !!! | AATATTTGTTATGATTTGAT+TGG | - | chr1_1:11783884-11783903 | Msa0008140:intron | 15.0% |
| !!! | AAATAACTATTGTATTGTTT+TGG | - | chr1_1:11785164-11785183 | Msa0008140:intron | 15.0% |
| !! | TTCTTAAAAAAATTGATGTT+TGG | + | chr1_1:11786160-11786179 | None:intergenic | 15.0% |
| !! | ACAAAGAATTAAAAAAACAT+AGG | + | chr1_1:11786364-11786383 | None:intergenic | 15.0% |
| !!! | TGTTTTTTTAATTCTTTGTA+TGG | - | chr1_1:11786365-11786384 | Msa0008140:intron | 15.0% |
| !! | ATATGTCAAATAGAAATATT+GGG | + | chr1_1:11786492-11786511 | None:intergenic | 15.0% |
| !! | AATATGTCAAATAGAAATAT+TGG | + | chr1_1:11786493-11786512 | None:intergenic | 15.0% |
| !! | CATTATTTAAATTTACTTCA+TGG | - | chr1_1:11787074-11787093 | Msa0008140:intron | 15.0% |
| !! | TAAAAAAATTAATGAGCAAA+TGG | - | chr1_1:11788206-11788225 | Msa0008140:intron | 15.0% |
| !! | CTTGAAAAATATAAACAAAA+TGG | - | chr1_1:11789301-11789320 | Msa0008140:CDS | 15.0% |
| !!! | TTTATAGATGTTTTTTTTTG+AGG | - | chr1_1:11789494-11789513 | Msa0008140:intron | 15.0% |
| !!! | ACTAATACAATAGTTTTTTA+TGG | - | chr1_1:11790263-11790282 | Msa0008140:intron | 15.0% |
| !! | TTTGTATTTGTATTACATAT+AGG | - | chr1_1:11790444-11790463 | Msa0008140:CDS | 15.0% |
| !! | GATTTATAATCAGAAAATAC+CGG | + | chr1_1:11782152-11782171 | None:intergenic | 20.0% |
| !!! | TATTTATGATTGTTGCTTTT+TGG | - | chr1_1:11782465-11782484 | Msa0008140:intron | 20.0% |
| !! | ACATTCATAAGTTTATGATA+TGG | - | chr1_1:11782566-11782585 | Msa0008140:intron | 20.0% |
| !! | AGAAAAATAGAATGAGAAAA+AGG | + | chr1_1:11782684-11782703 | None:intergenic | 20.0% |
| !!! | GACAAAAAATAAAAGTGTTA+AGG | - | chr1_1:11782768-11782787 | Msa0008140:intron | 20.0% |
| !!! | CAAAAAATAAAAGTGTTAAG+GGG | - | chr1_1:11782770-11782789 | Msa0008140:intron | 20.0% |
| !!! | ACTAACTTCTCTTTTATTTA+TGG | + | chr1_1:11783114-11783133 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAACACTGAAAG+TGG | + | chr1_1:11783326-11783345 | None:intergenic | 20.0% |
| !!! | AGGATTTATATGATTTTAGT+AGG | + | chr1_1:11783416-11783435 | None:intergenic | 20.0% |
| !!! | ACAACAAAATTTAACCTTTT+CGG | + | chr1_1:11783591-11783610 | None:intergenic | 20.0% |
| !!! | TAGCTGTTGATAATATTAAA+TGG | - | chr1_1:11783676-11783695 | Msa0008140:intron | 20.0% |
| !!! | TGTTGATAATATTAAATGGA+AGG | - | chr1_1:11783680-11783699 | Msa0008140:intron | 20.0% |
| !! | AATCATAACAAATATTTGGT+TGG | + | chr1_1:11783880-11783899 | None:intergenic | 20.0% |
| !! | AGAATTCAACTCATATTTAA+AGG | + | chr1_1:11783958-11783977 | None:intergenic | 20.0% |
| !! | ACCAATTTGTCTTATAAAAA+GGG | - | chr1_1:11784106-11784125 | Msa0008140:CDS | 20.0% |
| !! | CTCAAAACAATAATTTACAA+AGG | + | chr1_1:11784612-11784631 | None:intergenic | 20.0% |
| !!! | TTGTAAATTATTGTTTTGAG+TGG | - | chr1_1:11784612-11784631 | Msa0008140:intron | 20.0% |
| !!! | ATTTCGTCAAACATTTTATT+TGG | + | chr1_1:11785689-11785708 | None:intergenic | 20.0% |
| !! | AACAAAACAAAACTATTGAA+TGG | - | chr1_1:11785879-11785898 | Msa0008140:intron | 20.0% |
| !!! | AAAAAATTCTGAAGTTATGT+AGG | - | chr1_1:11786178-11786197 | Msa0008140:intron | 20.0% |
| !! | TAGATTCAAAATTCCATAAA+TGG | + | chr1_1:11786208-11786227 | None:intergenic | 20.0% |
| !! | CATGAATACATAATGATTAA+AGG | + | chr1_1:11786309-11786328 | None:intergenic | 20.0% |
| !!! | GAATTTTCATTTAACATATG+AGG | + | chr1_1:11786778-11786797 | None:intergenic | 20.0% |
| !!! | TTTGAAGTTAAAGAGAATAA+TGG | + | chr1_1:11786992-11787011 | None:intergenic | 20.0% |
| !! | TTTAAATAATGAACTAGTCA+TGG | + | chr1_1:11787065-11787084 | None:intergenic | 20.0% |
| !! | TCATATGCTTACAATTAAAT+CGG | - | chr1_1:11787458-11787477 | Msa0008140:intron | 20.0% |
| !! | TGTCAGTTATGAATTATAAT+TGG | - | chr1_1:11787660-11787679 | Msa0008140:intron | 20.0% |
| !! | AACTGTTATTAATTGAAGAT+AGG | - | chr1_1:11788366-11788385 | Msa0008140:intron | 20.0% |
| !! | GACTACAAAAATTAAAAACA+TGG | - | chr1_1:11788719-11788738 | Msa0008140:intron | 20.0% |
| !!! | TTTTTTTTACAGAATGTTAG+CGG | - | chr1_1:11789216-11789235 | Msa0008140:intron | 20.0% |
| !!! | TTTTTTTTGAGGAAAAACTA+TGG | - | chr1_1:11789505-11789524 | Msa0008140:intron | 20.0% |
| !!! | TTTTTTTGAGGAAAAACTAT+GGG | - | chr1_1:11789506-11789525 | Msa0008140:intron | 20.0% |
| !! | ATTAAAATGTACAAGTTTGA+AGG | - | chr1_1:11790168-11790187 | Msa0008140:intron | 20.0% |
| !! | TTAAAATGTACAAGTTTGAA+GGG | - | chr1_1:11790169-11790188 | Msa0008140:intron | 20.0% |
| !!! | TAATAACCAGTTGTATTTTA+TGG | - | chr1_1:11790233-11790252 | Msa0008140:intron | 20.0% |
| ! | AAAATTTCAGATAAACAGAC+CGG | - | chr1_1:11782130-11782149 | Msa0008140:CDS | 25.0% |
| ! | TATTCTTGTTCTATTTGTGA+AGG | + | chr1_1:11782292-11782311 | None:intergenic | 25.0% |
| ! | AGGTTTATTTATTCCTTTGT+TGG | + | chr1_1:11782531-11782550 | None:intergenic | 25.0% |
| ! | TCATAAGTTTATGATATGGA+TGG | - | chr1_1:11782570-11782589 | Msa0008140:intron | 25.0% |
| !! | ACTTCTTATTTACCTCTAAT+CGG | + | chr1_1:11782986-11783005 | None:intergenic | 25.0% |
| ! | CATTAGAAAAGAAAGAAAAC+CGG | + | chr1_1:11783162-11783181 | None:intergenic | 25.0% |
| !! | ACTATAAATTAAGCTTTGAC+TGG | - | chr1_1:11783289-11783308 | Msa0008140:intron | 25.0% |
| ! | GTGAATATAGACAACTTTAT+AGG | + | chr1_1:11783436-11783455 | None:intergenic | 25.0% |
| !!! | TGTATATTTGTTTTATACGG+TGG | - | chr1_1:11783608-11783627 | Msa0008140:intron | 25.0% |
| !! | GATGTGGTAAGTATTTTATT+TGG | - | chr1_1:11783782-11783801 | Msa0008140:intron | 25.0% |
| ! | GTGTAAAAAGAATTTACACA+TGG | + | chr1_1:11783912-11783931 | None:intergenic | 25.0% |
| ! | ACAAAAAACAAAAAACTACC+AGG | + | chr1_1:11784018-11784037 | None:intergenic | 25.0% |
| ! | CACCAATTTGTCTTATAAAA+AGG | - | chr1_1:11784105-11784124 | Msa0008140:CDS | 25.0% |
| !! | TCCCTTTTTATAAGACAAAT+TGG | + | chr1_1:11784110-11784129 | None:intergenic | 25.0% |
| ! | ACTTTCTTCTCTTATAAACA+AGG | - | chr1_1:11784254-11784273 | Msa0008140:intron | 25.0% |
| ! | CTTTCTTCTCTTATAAACAA+GGG | - | chr1_1:11784255-11784274 | Msa0008140:intron | 25.0% |
| !!! | GGTTAATGAAGATTTTTAGA+AGG | + | chr1_1:11784499-11784518 | None:intergenic | 25.0% |
| ! | AACAAATGATTTACTGTACA+GGG | - | chr1_1:11784919-11784938 | Msa0008140:intron | 25.0% |
| !!! | TCATCCGGAATTTTTTTAAA+CGG | + | chr1_1:11785004-11785023 | None:intergenic | 25.0% |
| !!! | AAGTCATTTTATCAAATGAG+AGG | + | chr1_1:11785090-11785109 | None:intergenic | 25.0% |
| ! | AATGATTACAAGTAGTGAAT+TGG | - | chr1_1:11785206-11785225 | Msa0008140:intron | 25.0% |
| !!! | ATTTGTGTCATTTATTCATC+AGG | - | chr1_1:11785323-11785342 | Msa0008140:CDS | 25.0% |
| ! | ACCTAAAAGTAACACTATAT+GGG | - | chr1_1:11785584-11785603 | Msa0008140:intron | 25.0% |
| !!! | TCTCATATAGTGTTACTTTT+AGG | + | chr1_1:11785643-11785662 | None:intergenic | 25.0% |
| ! | TAAAAGTAACACTATATGAG+AGG | - | chr1_1:11785642-11785661 | Msa0008140:CDS | 25.0% |
| ! | AAAAGTAACACTATATGAGA+GGG | - | chr1_1:11785643-11785662 | Msa0008140:CDS | 25.0% |
| !! | TTAAGATTTATTTGTTGGGT+TGG | - | chr1_1:11785799-11785818 | Msa0008140:intron | 25.0% |
| ! | CAAAACTATTGAATGGTATA+TGG | - | chr1_1:11785886-11785905 | Msa0008140:intron | 25.0% |
| !! | TGAATGGTATATGGATTAAA+TGG | - | chr1_1:11785895-11785914 | Msa0008140:intron | 25.0% |
| !! | TGTTCTTTTGAATCAATCAA+CGG | - | chr1_1:11785933-11785952 | Msa0008140:intron | 25.0% |
| ! | TTATGTAGGTATACCATTTA+TGG | - | chr1_1:11786192-11786211 | Msa0008140:intron | 25.0% |
| ! | TGTATTCATGCAAAACAATT+TGG | - | chr1_1:11786319-11786338 | Msa0008140:intron | 25.0% |
| ! | ATGTTAGAAACACAAATATG+TGG | + | chr1_1:11786437-11786456 | None:intergenic | 25.0% |
| ! | TTCTATATGTATCAAACATC+TGG | + | chr1_1:11786534-11786553 | None:intergenic | 25.0% |
| !! | GGATAAATATTTTGCATTGA+TGG | - | chr1_1:11786665-11786684 | Msa0008140:intron | 25.0% |
| ! | TAACATATGAGGAAAAAACA+GGG | + | chr1_1:11786767-11786786 | None:intergenic | 25.0% |
| ! | TTAACATATGAGGAAAAAAC+AGG | + | chr1_1:11786768-11786787 | None:intergenic | 25.0% |
| ! | AAATGAAAATTCTGATCTAC+AGG | - | chr1_1:11786786-11786805 | Msa0008140:intron | 25.0% |
| ! | GATAAAGGAAAAATTGATCT+TGG | - | chr1_1:11786814-11786833 | Msa0008140:intron | 25.0% |
| !! | CTTACAATTTGTTTGATTCA+TGG | - | chr1_1:11786907-11786926 | Msa0008140:intron | 25.0% |
| ! | AAAATTTAGATCTGTAGCTA+AGG | + | chr1_1:11786953-11786972 | None:intergenic | 25.0% |
| ! | AGAATAATGGTAAGTAACAT+AGG | + | chr1_1:11786979-11786998 | None:intergenic | 25.0% |
| !!! | ATGTAGGTTAAATTTGTTAG+AGG | - | chr1_1:11787025-11787044 | Msa0008140:intron | 25.0% |
| !!! | TTAAATTTGTTAGAGGTTGT+GGG | - | chr1_1:11787032-11787051 | Msa0008140:intron | 25.0% |
| ! | TTGTGCTAAATGAAAATTTC+AGG | - | chr1_1:11787274-11787293 | Msa0008140:intron | 25.0% |
| ! | TAATTGTAAGCATATGAAAC+TGG | + | chr1_1:11787455-11787474 | None:intergenic | 25.0% |
| ! | CATATGCTTACAATTAAATC+GGG | - | chr1_1:11787459-11787478 | Msa0008140:intron | 25.0% |
| !! | ATGATAACAACAAACTTGTT+AGG | - | chr1_1:11787974-11787993 | Msa0008140:intron | 25.0% |
| ! | AGGATGAAATTATTTGTTCA+TGG | - | chr1_1:11788055-11788074 | Msa0008140:intron | 25.0% |
| ! | TAATTGAAGATAGGACAAAA+AGG | - | chr1_1:11788375-11788394 | Msa0008140:intron | 25.0% |
| ! | AATTGAAGATAGGACAAAAA+GGG | - | chr1_1:11788376-11788395 | Msa0008140:intron | 25.0% |
| !! | CTTTTTGTTCAATCTTCAAT+TGG | + | chr1_1:11788472-11788491 | None:intergenic | 25.0% |
| ! | TAAGTATAACAATGTGGTAA+CGG | + | chr1_1:11788525-11788544 | None:intergenic | 25.0% |
| ! | TTACCACATTGTTATACTTA+AGG | - | chr1_1:11788525-11788544 | Msa0008140:intron | 25.0% |
| ! | ATTCCTTAAGTATAACAATG+TGG | + | chr1_1:11788531-11788550 | None:intergenic | 25.0% |
| !!! | AATGATGTGTTTTGTTTGTT+TGG | - | chr1_1:11788548-11788567 | Msa0008140:intron | 25.0% |
| !! | TTTGTTTGTTTGGAGTATAA+TGG | - | chr1_1:11788558-11788577 | Msa0008140:intron | 25.0% |
| ! | CATGTTCAACATTATCAATT+AGG | - | chr1_1:11788657-11788676 | Msa0008140:intron | 25.0% |
| !! | TTTTGTAGTCATTTCTTCTT+TGG | + | chr1_1:11788709-11788728 | None:intergenic | 25.0% |
| ! | ACTTCTTGGAAGATATAATT+GGG | - | chr1_1:11788799-11788818 | Msa0008140:intron | 25.0% |
| !!! | TGAAGATTGTTTAGAGTTTT+TGG | + | chr1_1:11788905-11788924 | None:intergenic | 25.0% |
| ! | ATCTTGCATTTCATTATCAT+TGG | - | chr1_1:11788925-11788944 | Msa0008140:intron | 25.0% |
| ! | CATTTCATTATCATTGGTAA+AGG | - | chr1_1:11788931-11788950 | Msa0008140:intron | 25.0% |
| ! | TTGGTAAAGGATAAAATTCT+TGG | - | chr1_1:11788944-11788963 | Msa0008140:intron | 25.0% |
| ! | CACAATCATCATAATTACAT+TGG | + | chr1_1:11788995-11789014 | None:intergenic | 25.0% |
| ! | CAATGTAATTATGATGATTG+TGG | - | chr1_1:11788993-11789012 | Msa0008140:intron | 25.0% |
| !!! | TTATGGGTTTTGAAGATATA+AGG | - | chr1_1:11789401-11789420 | Msa0008140:intron | 25.0% |
| ! | TTTGAAGATATAAGGTAATG+TGG | - | chr1_1:11789409-11789428 | Msa0008140:intron | 25.0% |
| ! | AATCAAAAAAATTACGGTCA+TGG | + | chr1_1:11789449-11789468 | None:intergenic | 25.0% |
| ! | TAAAATGTACAAGTTTGAAG+GGG | - | chr1_1:11790170-11790189 | Msa0008140:intron | 25.0% |
| ! | TTTAGACCATAAAATACAAC+TGG | + | chr1_1:11790242-11790261 | None:intergenic | 25.0% |
| ! | GTAAAAAGTCAGACATTTAA+AGG | + | chr1_1:11790384-11790403 | None:intergenic | 25.0% |
| ! | TAGAAAACAGAATAGTTAGA+TGG | + | chr1_1:11790487-11790506 | None:intergenic | 25.0% |
| !! | ATCTAACTATTCTGTTTTCT+AGG | - | chr1_1:11790486-11790505 | Msa0008140:CDS | 25.0% |
| ! | TTACTACTGAAGATTGAAAA+AGG | - | chr1_1:11790599-11790618 | Msa0008140:intron | 25.0% |
| ! | GTCGAGATATAAAAAACATA+TGG | - | chr1_1:11790679-11790698 | Msa0008140:intron | 25.0% |
| TTCTTCAAAGCAATGGTAAA+AGG | + | chr1_1:11782100-11782119 | None:intergenic | 30.0% | |
| TAGAACAAGAATACCATGAA+TGG | - | chr1_1:11782299-11782318 | Msa0008140:CDS | 30.0% | |
| GCATTTCTAATATCCATTCA+TGG | + | chr1_1:11782315-11782334 | None:intergenic | 30.0% | |
| ! | AATGTATTAAAGGATTAGCG+AGG | + | chr1_1:11782551-11782570 | None:intergenic | 30.0% |
| !! | TTCAAGCAAAAAGTACTCTA+TGG | + | chr1_1:11782834-11782853 | None:intergenic | 30.0% |
| !! | ATAGAGTACTTTTTGCTTGA+AGG | - | chr1_1:11782833-11782852 | Msa0008140:intron | 30.0% |
| !! | TTTTTGCTTGAAGGTTTTGA+AGG | - | chr1_1:11782842-11782861 | Msa0008140:intron | 30.0% |
| ! | CTTCTTATTTACCTCTAATC+GGG | + | chr1_1:11782985-11783004 | None:intergenic | 30.0% |
| GATTAGAGGTAAATAAGAAG+TGG | - | chr1_1:11782985-11783004 | Msa0008140:CDS | 30.0% | |
| AAGTGAAAAAAAGTGGAAAC+CGG | - | chr1_1:11783140-11783159 | Msa0008140:CDS | 30.0% | |
| !!! | GTAATTTTGGTAATGAGTGA+AGG | - | chr1_1:11783202-11783221 | Msa0008140:CDS | 30.0% |
| ! | TTTTGTTAATAGGAGAAGCT+CGG | - | chr1_1:11783349-11783368 | Msa0008140:intron | 30.0% |
| !! | GTGGTAAGTATTTTATTTGG+AGG | - | chr1_1:11783785-11783804 | Msa0008140:intron | 30.0% |
| ! | TTTGATGATACTATGTCCTT+GGG | + | chr1_1:11783988-11784007 | None:intergenic | 30.0% |
| GTATCATCAAAGTTTATTCC+TGG | - | chr1_1:11783997-11784016 | Msa0008140:CDS | 30.0% | |
| !!! | ATGTGACTTATTTTATGTCG+TGG | + | chr1_1:11784384-11784403 | None:intergenic | 30.0% |
| ! | TGAATTCATGCAATTTTCGA+AGG | + | chr1_1:11784520-11784539 | None:intergenic | 30.0% |
| TGCAATGAAATATAGTGCAT+TGG | - | chr1_1:11784637-11784656 | Msa0008140:intron | 30.0% | |
| !! | CATTGGTAATTTTATCTGCT+AGG | - | chr1_1:11784654-11784673 | Msa0008140:intron | 30.0% |
| TCCTTCACAAAACTATAACA+TGG | - | chr1_1:11784839-11784858 | Msa0008140:intron | 30.0% | |
| !!! | TCCATGTTATAGTTTTGTGA+AGG | + | chr1_1:11784843-11784862 | None:intergenic | 30.0% |
| CAACAAATGATTTACTGTAC+AGG | - | chr1_1:11784918-11784937 | Msa0008140:intron | 30.0% | |
| AGCTCCGTTTAAAAAAATTC+CGG | - | chr1_1:11784997-11785016 | Msa0008140:intron | 30.0% | |
| !!! | TGTTTTGGAATGTTTAACAC+AGG | - | chr1_1:11785179-11785198 | Msa0008140:intron | 30.0% |
| ! | ATCAAAGTAGTTCTATAGCT+GGG | + | chr1_1:11785243-11785262 | None:intergenic | 30.0% |
| ! | AATCAAAGTAGTTCTATAGC+TGG | + | chr1_1:11785244-11785263 | None:intergenic | 30.0% |
| ! | TTTTTGTATTCAGTTTCTCC+TGG | - | chr1_1:11785393-11785412 | Msa0008140:CDS | 30.0% |
| !! | AGTTGGTCTTCTCTTATATT+AGG | + | chr1_1:11785444-11785463 | None:intergenic | 30.0% |
| !!! | TGTTTTAGTTCATTCACTTG+TGG | - | chr1_1:11785553-11785572 | Msa0008140:intron | 30.0% |
| GACCTAAAAGTAACACTATA+TGG | - | chr1_1:11785583-11785602 | Msa0008140:intron | 30.0% | |
| !!! | TCCCATATAGTGTTACTTTT+AGG | + | chr1_1:11785588-11785607 | None:intergenic | 30.0% |
| TAAAAGTAACACTATATGGG+AGG | - | chr1_1:11785587-11785606 | Msa0008140:intron | 30.0% | |
| !! | ATTTATTTGTTGGGTTGGAT+CGG | - | chr1_1:11785804-11785823 | Msa0008140:intron | 30.0% |
| ! | AAAGCTTTGACCTACAAAAT+CGG | + | chr1_1:11785983-11786002 | None:intergenic | 30.0% |
| !! | AAAGCTTTGTGTCAATTTTC+TGG | - | chr1_1:11785995-11786014 | Msa0008140:CDS | 30.0% |
| ! | TGAAAACTAGAACTCTAGAA+GGG | + | chr1_1:11786032-11786051 | None:intergenic | 30.0% |
| ATGAAAACTAGAACTCTAGA+AGG | + | chr1_1:11786033-11786052 | None:intergenic | 30.0% | |
| TTCTTTGTATGGACAATTAC+AGG | - | chr1_1:11786376-11786395 | Msa0008140:intron | 30.0% | |
| ! | GAGGTTAATATTCTTTTGGA+AGG | - | chr1_1:11786574-11786593 | Msa0008140:intron | 30.0% |
| !! | TTCTTTTGGAAGGATTTGAA+AGG | - | chr1_1:11786584-11786603 | Msa0008140:intron | 30.0% |
| TAATTGCAGTACTGTATACA+AGG | - | chr1_1:11786612-11786631 | Msa0008140:intron | 30.0% | |
| TCTTACAAACTCTAGTATAC+TGG | - | chr1_1:11786643-11786662 | Msa0008140:intron | 30.0% | |
| CTTACAAACTCTAGTATACT+GGG | - | chr1_1:11786644-11786663 | Msa0008140:intron | 30.0% | |
| ACTTGGAGAAACATATATGT+AGG | - | chr1_1:11786692-11786711 | Msa0008140:intron | 30.0% | |
| CTTGGAGAAACATATATGTA+GGG | - | chr1_1:11786693-11786712 | Msa0008140:intron | 30.0% | |
| AAAGGAAAAATTGATCTTGG+TGG | - | chr1_1:11786817-11786836 | Msa0008140:intron | 30.0% | |
| AAAATGTTACACAGTGATGT+AGG | - | chr1_1:11787009-11787028 | Msa0008140:intron | 30.0% | |
| !! | GTTAAATTTGTTAGAGGTTG+TGG | - | chr1_1:11787031-11787050 | Msa0008140:intron | 30.0% |
| CATCTAATCTGTTTGATTCA+TGG | - | chr1_1:11787131-11787150 | Msa0008140:intron | 30.0% | |
| ! | TTTGAAATTGTCAATGCTGA+TGG | - | chr1_1:11787390-11787409 | Msa0008140:CDS | 30.0% |
| ATTAAGACAAAGTCAGAATG+AGG | + | chr1_1:11788116-11788135 | None:intergenic | 30.0% | |
| ! | CATTAATTTTCTGACCAAGT+TGG | + | chr1_1:11788170-11788189 | None:intergenic | 30.0% |
| TCCATTCAATGAACAATATC+AGG | + | chr1_1:11788402-11788421 | None:intergenic | 30.0% | |
| !! | ACAAAACATGTCATTGGTTT+GGG | + | chr1_1:11788608-11788627 | None:intergenic | 30.0% |
| CACTTCTTGGAAGATATAAT+TGG | - | chr1_1:11788798-11788817 | Msa0008140:intron | 30.0% | |
| CTTCTTGGAAGATATAATTG+GGG | - | chr1_1:11788800-11788819 | Msa0008140:intron | 30.0% | |
| !!! | GATTGTTTAGAGTTTTTGGT+CGG | + | chr1_1:11788901-11788920 | None:intergenic | 30.0% |
| ATTTGTGGAGGTAACTAATA+TGG | + | chr1_1:11789113-11789132 | None:intergenic | 30.0% | |
| GTTAGTAAATGAGTGATACA+GGG | + | chr1_1:11789144-11789163 | None:intergenic | 30.0% | |
| TGTTAGTAAATGAGTGATAC+AGG | + | chr1_1:11789145-11789164 | None:intergenic | 30.0% | |
| GTAAAACAATGAATCTTCTG+AGG | - | chr1_1:11789165-11789184 | Msa0008140:intron | 30.0% | |
| ! | AAGCAAACGTTTTCATGTTA+TGG | - | chr1_1:11789384-11789403 | Msa0008140:intron | 30.0% |
| ! | AGCAAACGTTTTCATGTTAT+GGG | - | chr1_1:11789385-11789404 | Msa0008140:intron | 30.0% |
| ! | CTATTTGATAACTTTGGATC+GGG | + | chr1_1:11789648-11789667 | None:intergenic | 30.0% |
| ! | CCTATTTGATAACTTTGGAT+CGG | + | chr1_1:11789649-11789668 | None:intergenic | 30.0% |
| ! | GTTCTCCTATTTGATAACTT+TGG | + | chr1_1:11789654-11789673 | None:intergenic | 30.0% |
| CTTGAAAAGGCTAAATAGAA+CGG | + | chr1_1:11789772-11789791 | None:intergenic | 30.0% | |
| !!! | TCTTGCTTGTTTTGTAAACA+TGG | + | chr1_1:11789045-11789064 | None:intergenic | 30.0% |
| GCTATTGAATGTATAGAGAA+TGG | - | chr1_1:11789831-11789850 | Msa0008140:intron | 30.0% | |
| ATCTAATGAACTCATGTGTT+TGG | - | chr1_1:11789994-11790013 | Msa0008140:CDS | 30.0% | |
| TCTAATGAACTCATGTGTTT+GGG | - | chr1_1:11789995-11790014 | Msa0008140:CDS | 30.0% | |
| ! | GTGTATTAATTCTTTTGCAG+TGG | + | chr1_1:11790103-11790122 | None:intergenic | 30.0% |
| TTAATACACACACATTGACA+TGG | - | chr1_1:11790114-11790133 | Msa0008140:intron | 30.0% | |
| !! | TGGTTATTTTCGTGTATAGA+AGG | - | chr1_1:11790283-11790302 | Msa0008140:intron | 30.0% |
| ! | CTTGCATATATTTTCCTTGT+GGG | - | chr1_1:11790513-11790532 | Msa0008140:CDS | 30.0% |
| AAGCAATGGTAAAAGGATTC+TGG | + | chr1_1:11782093-11782112 | None:intergenic | 35.0% | |
| !! | TACCATTGCTTTGAAGAACT+TGG | - | chr1_1:11782102-11782121 | Msa0008140:CDS | 35.0% |
| !! | ACCATTGCTTTGAAGAACTT+GGG | - | chr1_1:11782103-11782122 | Msa0008140:CDS | 35.0% |
| TGTTTCCGTCAAAATTAGCA+CGG | - | chr1_1:11782249-11782268 | Msa0008140:CDS | 35.0% | |
| ACACACTTTCATACCAACAA+AGG | - | chr1_1:11782515-11782534 | Msa0008140:intron | 35.0% | |
| GTGAAGTCATTAGAGTTCAT+CGG | - | chr1_1:11782711-11782730 | Msa0008140:intron | 35.0% | |
| TGAAGTCATTAGAGTTCATC+GGG | - | chr1_1:11782712-11782731 | Msa0008140:intron | 35.0% | |
| TTACTTTATGCGCTACATTC+AGG | + | chr1_1:11782887-11782906 | None:intergenic | 35.0% | |
| ! | TGTGCTTTGCTTGATTTTAC+AGG | - | chr1_1:11783456-11783475 | Msa0008140:CDS | 35.0% |
| TGAGTCTAATTTCTATGCAC+TGG | - | chr1_1:11783829-11783848 | Msa0008140:intron | 35.0% | |
| ! | CTTTGATGATACTATGTCCT+TGG | + | chr1_1:11783989-11784008 | None:intergenic | 35.0% |
| ! | TGGTAATTTTATCTGCTAGG+TGG | - | chr1_1:11784657-11784676 | Msa0008140:intron | 35.0% |
| TGAAACGTATTCATTGTGCT+TGG | - | chr1_1:11784716-11784735 | Msa0008140:intron | 35.0% | |
| AATGATTTACTGTACAGGGT+TGG | - | chr1_1:11784923-11784942 | Msa0008140:intron | 35.0% | |
| ATGGATGTCATAACATGCAA+TGG | + | chr1_1:11784969-11784988 | None:intergenic | 35.0% | |
| GACTTGTATTTCAAAGTGCA+TGG | - | chr1_1:11785052-11785071 | Msa0008140:CDS | 35.0% | |
| GTAGTGAATTGGACAAGATA+AGG | - | chr1_1:11785217-11785236 | Msa0008140:intron | 35.0% | |
| CACGGAAAAGATACTGAAAA+CGG | + | chr1_1:11785285-11785304 | None:intergenic | 35.0% | |
| TTAGCATATTCGAGATAACC+AGG | + | chr1_1:11785414-11785433 | None:intergenic | 35.0% | |
| AACTCCTTGAAAATGAAACC+CGG | + | chr1_1:11785471-11785490 | None:intergenic | 35.0% | |
| GACTGTGTTCATTCACTTAT+GGG | - | chr1_1:11785609-11785628 | Msa0008140:CDS | 35.0% | |
| GATCCAATCAAATGTGTAGA+TGG | - | chr1_1:11785843-11785862 | Msa0008140:intron | 35.0% | |
| TCACCATCTACACATTTGAT+TGG | + | chr1_1:11785849-11785868 | None:intergenic | 35.0% | |
| !! | CTTTGTGTCAATTTTCTGGT+GGG | - | chr1_1:11785999-11786018 | Msa0008140:CDS | 35.0% |
| ! | GAAAACTAGAACTCTAGAAG+GGG | + | chr1_1:11786031-11786050 | None:intergenic | 35.0% |
| TCATCACACAAATGTTCACT+TGG | - | chr1_1:11786049-11786068 | Msa0008140:intron | 35.0% | |
| TATAGAAACCATGTGTCTGA+AGG | - | chr1_1:11786547-11786566 | Msa0008140:intron | 35.0% | |
| ! | CGTGGAGGTTAATATTCTTT+TGG | - | chr1_1:11786570-11786589 | Msa0008140:intron | 35.0% |
| ! | TTTGCATTGATGGTTGTACT+TGG | - | chr1_1:11786675-11786694 | Msa0008140:intron | 35.0% |
| GATCTACAGGTAGATGATAA+AGG | - | chr1_1:11786799-11786818 | Msa0008140:intron | 35.0% | |
| ! | CTAAAGTTAACAGCAGGTTT+TGG | - | chr1_1:11786844-11786863 | Msa0008140:intron | 35.0% |
| TCCATATCTGTTATGTTCGA+AGG | - | chr1_1:11787161-11787180 | Msa0008140:intron | 35.0% | |
| ACCTTCGAACATAACAGATA+TGG | + | chr1_1:11787165-11787184 | None:intergenic | 35.0% | |
| TCGAAGGTAAACCAAAATTC+AGG | - | chr1_1:11787177-11787196 | Msa0008140:intron | 35.0% | |
| GCTGTATTGTGTTCAATTTC+AGG | - | chr1_1:11787323-11787342 | Msa0008140:intron | 35.0% | |
| TCGATTCATCTGCATTAGAA+AGG | + | chr1_1:11787485-11787504 | None:intergenic | 35.0% | |
| CTAATGCAGATGAATCGATA+CGG | - | chr1_1:11787487-11787506 | Msa0008140:intron | 35.0% | |
| ! | ATACGGTACACTTTTAAGCA+TGG | - | chr1_1:11787504-11787523 | Msa0008140:intron | 35.0% |
| !! | ATTTCTGGAACACGAATAGA+TGG | + | chr1_1:11787543-11787562 | None:intergenic | 35.0% |
| ATGAGAAGCTTCAAAGCAAA+AGG | + | chr1_1:11787574-11787593 | None:intergenic | 35.0% | |
| AATTGGTTAGATTTGTCTGC+AGG | - | chr1_1:11787677-11787696 | Msa0008140:intron | 35.0% | |
| !! | AAGAGTTGATAGTTCCTTCA+GGG | + | chr1_1:11787772-11787791 | None:intergenic | 35.0% |
| !! | TAAGAGTTGATAGTTCCTTC+AGG | + | chr1_1:11787773-11787792 | None:intergenic | 35.0% |
| AATAGTACTAGAGAGAGAGA+GGG | + | chr1_1:11788344-11788363 | None:intergenic | 35.0% | |
| AAATAGTACTAGAGAGAGAG+AGG | + | chr1_1:11788345-11788364 | None:intergenic | 35.0% | |
| GCCTGATATTGTTCATTGAA+TGG | - | chr1_1:11788398-11788417 | Msa0008140:intron | 35.0% | |
| GGTAATTGCTAAAACATCGT+AGG | + | chr1_1:11788451-11788470 | None:intergenic | 35.0% | |
| ! | GTTTGTTTGGAGTATAATGG+AGG | - | chr1_1:11788561-11788580 | Msa0008140:intron | 35.0% |
| !!! | AGGCAATGAGGTTTTAACTT+AGG | - | chr1_1:11788581-11788600 | Msa0008140:intron | 35.0% |
| ! | CACAAAACATGTCATTGGTT+TGG | + | chr1_1:11788609-11788628 | None:intergenic | 35.0% |
| ! | CAAACCAATGACATGTTTTG+TGG | - | chr1_1:11788607-11788626 | Msa0008140:intron | 35.0% |
| CAAACCACAAAACATGTCAT+TGG | + | chr1_1:11788614-11788633 | None:intergenic | 35.0% | |
| TGTAGTCATTTCTTCTTTGG+TGG | + | chr1_1:11788706-11788725 | None:intergenic | 35.0% | |
| AAAGCAACAGAATCACTTCT+TGG | - | chr1_1:11788785-11788804 | Msa0008140:intron | 35.0% | |
| AGAATGTTAGCGGAATATCT+TGG | - | chr1_1:11789226-11789245 | Msa0008140:intron | 35.0% | |
| !! | GGGTGTTATTTGTAGATCTT+TGG | - | chr1_1:11789264-11789283 | Msa0008140:CDS | 35.0% |
| ATAAGGTAATGTGGAGTTTC+AGG | - | chr1_1:11789418-11789437 | Msa0008140:intron | 35.0% | |
| TAAGGTAATGTGGAGTTTCA+GGG | - | chr1_1:11789419-11789438 | Msa0008140:intron | 35.0% | |
| CAAACAATGCTTCATTTGAC+AGG | - | chr1_1:11789574-11789593 | Msa0008140:intron | 35.0% | |
| ! | TTTTGCAAGTTCCCATCATA+TGG | + | chr1_1:11789600-11789619 | None:intergenic | 35.0% |
| CCGATCCAAAGTTATCAAAT+AGG | - | chr1_1:11789646-11789665 | Msa0008140:intron | 35.0% | |
| AAACATGGAGCTTCTTGAAA+AGG | + | chr1_1:11789785-11789804 | None:intergenic | 35.0% | |
| ! | CAAAACAAGCAAGAGTATGA+TGG | - | chr1_1:11789806-11789825 | Msa0008140:intron | 35.0% |
| !! | AATGGTGCTGTATCATTAGA+TGG | - | chr1_1:11789849-11789868 | Msa0008140:intron | 35.0% |
| GAAAATGGAACTCTTTCTCT+TGG | - | chr1_1:11789885-11789904 | Msa0008140:intron | 35.0% | |
| TCACAGACAGAAAAGAGAAA+AGG | + | chr1_1:11789925-11789944 | None:intergenic | 35.0% | |
| CAACTGGTTATTAGTTCAGT+TGG | + | chr1_1:11790226-11790245 | None:intergenic | 35.0% | |
| CCACAAGGAAAATATATGCA+AGG | + | chr1_1:11790515-11790534 | None:intergenic | 35.0% | |
| ! | CCTTGCATATATTTTCCTTG+TGG | - | chr1_1:11790512-11790531 | Msa0008140:CDS | 35.0% |
| TTGGAACAAAATCCAGAGAT+TGG | - | chr1_1:11790731-11790750 | Msa0008140:CDS | 35.0% | |
| TGGAACAAAATCCAGAGATT+GGG | - | chr1_1:11790732-11790751 | Msa0008140:CDS | 35.0% | |
| TGAGCTAAATCCGTCTGAAA+AGG | + | chr1_1:11782070-11782089 | None:intergenic | 40.0% | |
| ! | TATAACTGGCTTATCCTCAC+CGG | + | chr1_1:11782365-11782384 | None:intergenic | 40.0% |
| !! | GGTGGATTGACAACTATAAC+TGG | + | chr1_1:11782379-11782398 | None:intergenic | 40.0% |
| ! | TGGCATTTCTGAAGATGGTA+TGG | - | chr1_1:11782414-11782433 | Msa0008140:intron | 40.0% |
| TGAAGAGAAAGGAGAAGTCT+TGG | - | chr1_1:11782738-11782757 | Msa0008140:intron | 40.0% | |
| TACCTCTAATCGGGAGATAT+GGG | + | chr1_1:11782976-11782995 | None:intergenic | 40.0% | |
| TTACCTCTAATCGGGAGATA+TGG | + | chr1_1:11782977-11782996 | None:intergenic | 40.0% | |
| !! | TTCTCCTCTGGGATATCTAT+TGG | + | chr1_1:11783482-11783501 | None:intergenic | 40.0% |
| ATAGATATCCCAGAGGAGAA+TGG | - | chr1_1:11783482-11783501 | Msa0008140:CDS | 40.0% | |
| TAGATATCCCAGAGGAGAAT+GGG | - | chr1_1:11783483-11783502 | Msa0008140:CDS | 40.0% | |
| GAAAACCCCACCTTGAATAT+CGG | - | chr1_1:11783530-11783549 | Msa0008140:CDS | 40.0% | |
| CAAAGAGCTACCGATATTCA+AGG | + | chr1_1:11783543-11783562 | None:intergenic | 40.0% | |
| CAACGTGCTTTCGTTTATAC+TGG | + | chr1_1:11783763-11783782 | None:intergenic | 40.0% | |
| ! | TAAACGAAAGCACGTTGATG+TGG | - | chr1_1:11783766-11783785 | Msa0008140:intron | 40.0% |
| TTGAATTCTCATTCCTCCCA+AGG | - | chr1_1:11783969-11783988 | Msa0008140:intron | 40.0% | |
| TATAATTAGCGTGTCGTGTC+TGG | - | chr1_1:11784181-11784200 | Msa0008140:intron | 40.0% | |
| TGACATCAAGCTCTTGACAT+TGG | + | chr1_1:11784765-11784784 | None:intergenic | 40.0% | |
| AATGTCAAGAGCTTGATGTC+AGG | - | chr1_1:11784764-11784783 | Msa0008140:intron | 40.0% | |
| TAACATGCAATGGCTAAGGA+TGG | + | chr1_1:11784959-11784978 | None:intergenic | 40.0% | |
| GTCATAACATGCAATGGCTA+AGG | + | chr1_1:11784963-11784982 | None:intergenic | 40.0% | |
| CAATCAAAATCACCTCGACA+CGG | + | chr1_1:11785303-11785322 | None:intergenic | 40.0% | |
| AAGAGAAGACCAACTACTTC+CGG | - | chr1_1:11785449-11785468 | Msa0008140:CDS | 40.0% | |
| AAATGAAACCCGGAAGTAGT+TGG | + | chr1_1:11785461-11785480 | None:intergenic | 40.0% | |
| ! | ACTTCCGGGTTTCATTTTCA+AGG | - | chr1_1:11785464-11785483 | Msa0008140:CDS | 40.0% |
| TTTCAAGGAGTTAGCGTTTG+AGG | - | chr1_1:11785479-11785498 | Msa0008140:CDS | 40.0% | |
| GGACTGTGTTCATTCACTTA+TGG | - | chr1_1:11785608-11785627 | Msa0008140:CDS | 40.0% | |
| CTATATGAGAGGGTTGTGTT+TGG | - | chr1_1:11785653-11785672 | Msa0008140:CDS | 40.0% | |
| ACATTTGATTGGATCTTCCC+CGG | + | chr1_1:11785838-11785857 | None:intergenic | 40.0% | |
| ! | GCTTTGTGTCAATTTTCTGG+TGG | - | chr1_1:11785998-11786017 | Msa0008140:CDS | 40.0% |
| !!! | AAGGCTTTTAAAGTGTGTGC+AGG | - | chr1_1:11786129-11786148 | Msa0008140:intron | 40.0% |
| GGTCAACTAAAGTTAACAGC+AGG | - | chr1_1:11786838-11786857 | Msa0008140:intron | 40.0% | |
| !!! | ACAGCAGGTTTTGGAGAAAA+TGG | - | chr1_1:11786853-11786872 | Msa0008140:intron | 40.0% |
| AGGTAAACCAAAATTCAGGC+AGG | - | chr1_1:11787181-11787200 | Msa0008140:intron | 40.0% | |
| ! | GAAAACTCCTGCCTGAATTT+TGG | + | chr1_1:11787191-11787210 | None:intergenic | 40.0% |
| TTGTGCAACATCTTTCGCAT+TGG | + | chr1_1:11787721-11787740 | None:intergenic | 40.0% | |
| !! | AGGGGGAAAGTATTCTTATC+CGG | + | chr1_1:11787753-11787772 | None:intergenic | 40.0% |
| TAAGAATACTTTCCCCCTGA+AGG | - | chr1_1:11787755-11787774 | Msa0008140:CDS | 40.0% | |
| !! | AGAGTTGATAGTTCCTTCAG+GGG | + | chr1_1:11787771-11787790 | None:intergenic | 40.0% |
| ATCTCTGTCCTAAATAGCGA+TGG | - | chr1_1:11787813-11787832 | Msa0008140:CDS | 40.0% | |
| ATACCTTGCCATCGCTATTT+AGG | + | chr1_1:11787824-11787843 | None:intergenic | 40.0% | |
| AGCATAACGAATCACAGTCA+TGG | + | chr1_1:11787897-11787916 | None:intergenic | 40.0% | |
| TTTGACGACATTTGCCAACT+TGG | - | chr1_1:11788153-11788172 | Msa0008140:intron | 40.0% | |
| AGTCATTTCTTCTTTGGTGG+TGG | + | chr1_1:11788703-11788722 | None:intergenic | 40.0% | |
| ATTCTGAACAGAACCAAGGA+GGG | + | chr1_1:11788832-11788851 | None:intergenic | 40.0% | |
| !!! | TTTAGAGTTTTTGGTCGGCA+GGG | + | chr1_1:11788896-11788915 | None:intergenic | 40.0% |
| TACAGGGCACATATCATTTG+TGG | + | chr1_1:11789128-11789147 | None:intergenic | 40.0% | |
| TCTTGGTGAAGATCAAATGC+TGG | - | chr1_1:11789243-11789262 | Msa0008140:intron | 40.0% | |
| CTTGGTGAAGATCAAATGCT+GGG | - | chr1_1:11789244-11789263 | Msa0008140:intron | 40.0% | |
| AAGGTAATGTGGAGTTTCAG+GGG | - | chr1_1:11789420-11789439 | Msa0008140:intron | 40.0% | |
| TGAGGAAAAACTATGGGACA+AGG | - | chr1_1:11789512-11789531 | Msa0008140:intron | 40.0% | |
| TCATTTGACAGGCCATATGA+TGG | - | chr1_1:11789585-11789604 | Msa0008140:intron | 40.0% | |
| CATTTGACAGGCCATATGAT+GGG | - | chr1_1:11789586-11789605 | Msa0008140:intron | 40.0% | |
| GGCGGCATTATAAGAGAAAA+TGG | - | chr1_1:11789870-11789889 | Msa0008140:intron | 40.0% | |
| ! | GAACTCTTTCTCTTGGCTTT+GGG | - | chr1_1:11789892-11789911 | Msa0008140:intron | 40.0% |
| TTCAACATTTGCGTAGCTTC+TGG | + | chr1_1:11790557-11790576 | None:intergenic | 40.0% | |
| ! | AACAATGAAGCCTTTTGCTG+AGG | - | chr1_1:11790706-11790725 | Msa0008140:CDS | 40.0% |
| GCCCAAGTTCTTCAAAGCAA+TGG | + | chr1_1:11782107-11782126 | None:intergenic | 45.0% | |
| ! | TGTCGCCGTGCTAATTTTGA+CGG | + | chr1_1:11782257-11782276 | None:intergenic | 45.0% |
| ! | TATGATGACGAAGCTGATGC+CGG | - | chr1_1:11782343-11782362 | Msa0008140:intron | 45.0% |
| AGTTGTCAATCCACCGAACA+AGG | - | chr1_1:11782384-11782403 | Msa0008140:intron | 45.0% | |
| ATGCCAAGTGCTTCCTTGTT+CGG | + | chr1_1:11782400-11782419 | None:intergenic | 45.0% | |
| ! | GCACTTGGCATTTCTGAAGA+TGG | - | chr1_1:11782409-11782428 | Msa0008140:intron | 45.0% |
| !! | TGAGACTAGTCTAGTGCAAC+TGG | + | chr1_1:11782604-11782623 | None:intergenic | 45.0% |
| !! | TCATCGGGTTCTGAAGAGAA+AGG | - | chr1_1:11782727-11782746 | Msa0008140:intron | 45.0% |
| AAGGAGAAGTCTTGGAGTCA+TGG | - | chr1_1:11782746-11782765 | Msa0008140:intron | 45.0% | |
| ! | TGTTAAGGGGAGCATGTTCA+GGG | - | chr1_1:11782783-11782802 | Msa0008140:intron | 45.0% |
| !!! | TGAAGGTTTTGAAGGAGACC+TGG | - | chr1_1:11782850-11782869 | Msa0008140:intron | 45.0% |
| !!! | GAAGGTTTTGAAGGAGACCT+GGG | - | chr1_1:11782851-11782870 | Msa0008140:intron | 45.0% |
| ATTCAGGAATCTTACCACCC+AGG | + | chr1_1:11782871-11782890 | None:intergenic | 45.0% | |
| TCTAATCGGGAGATATGGGA+TGG | + | chr1_1:11782972-11782991 | None:intergenic | 45.0% | |
| ATCCCATATCTCCCGATTAG+AGG | - | chr1_1:11782971-11782990 | Msa0008140:CDS | 45.0% | |
| AGCTACCGATATTCAAGGTG+GGG | + | chr1_1:11783538-11783557 | None:intergenic | 45.0% | |
| GAGCTACCGATATTCAAGGT+GGG | + | chr1_1:11783539-11783558 | None:intergenic | 45.0% | |
| AGAGCTACCGATATTCAAGG+TGG | + | chr1_1:11783540-11783559 | None:intergenic | 45.0% | |
| GATGATACTATGTCCTTGGG+AGG | + | chr1_1:11783985-11784004 | None:intergenic | 45.0% | |
| TGCAATGGCTAAGGATGGAA+AGG | + | chr1_1:11784954-11784973 | None:intergenic | 45.0% | |
| AGTTCAACAGTCACGTCATC+CGG | + | chr1_1:11785019-11785038 | None:intergenic | 45.0% | |
| TGACGTGACTGTTGAACTTC+AGG | - | chr1_1:11785021-11785040 | Msa0008140:CDS | 45.0% | |
| ! | TCAGTATCTTTTCCGTGTCG+AGG | - | chr1_1:11785288-11785307 | Msa0008140:CDS | 45.0% |
| AGAGAAGACCAACTACTTCC+GGG | - | chr1_1:11785450-11785469 | Msa0008140:CDS | 45.0% | |
| GGTTGGATCGGTAGAAATTC+CGG | - | chr1_1:11785816-11785835 | Msa0008140:intron | 45.0% | |
| GTTGGATCGGTAGAAATTCC+GGG | - | chr1_1:11785817-11785836 | Msa0008140:intron | 45.0% | |
| TTGGATCGGTAGAAATTCCG+GGG | - | chr1_1:11785818-11785837 | Msa0008140:intron | 45.0% | |
| !!! | TGCTGCAATGCCGATTTTGT+AGG | - | chr1_1:11785970-11785989 | Msa0008140:intron | 45.0% |
| AATCTTGCGAATCGCATCTG+AGG | - | chr1_1:11787223-11787242 | Msa0008140:intron | 45.0% | |
| TGTTGCACAACATCTATCCC+CGG | - | chr1_1:11787731-11787750 | Msa0008140:CDS | 45.0% | |
| !! | GGGGAAAGTATTCTTATCCG+GGG | + | chr1_1:11787751-11787770 | None:intergenic | 45.0% |
| !! | GGGGGAAAGTATTCTTATCC+GGG | + | chr1_1:11787752-11787771 | None:intergenic | 45.0% |
| !! | GAGTTGATAGTTCCTTCAGG+GGG | + | chr1_1:11787770-11787789 | None:intergenic | 45.0% |
| TGTCCTAAATAGCGATGGCA+AGG | - | chr1_1:11787818-11787837 | Msa0008140:CDS | 45.0% | |
| ! | GGAGTATAATGGAGGCAATG+AGG | - | chr1_1:11788569-11788588 | Msa0008140:intron | 45.0% |
| GATTCTGAACAGAACCAAGG+AGG | + | chr1_1:11788833-11788852 | None:intergenic | 45.0% | |
| CAGGATTCTGAACAGAACCA+AGG | + | chr1_1:11788836-11788855 | None:intergenic | 45.0% | |
| TTCAGAATCCTGAGCTTAGC+AGG | - | chr1_1:11788844-11788863 | Msa0008140:intron | 45.0% | |
| TTGACAAACCTGCTAAGCTC+AGG | + | chr1_1:11788855-11788874 | None:intergenic | 45.0% | |
| !!! | GTTTAGAGTTTTTGGTCGGC+AGG | + | chr1_1:11788897-11788916 | None:intergenic | 45.0% |
| AGGGCACATATCATTTGTGG+AGG | + | chr1_1:11789125-11789144 | None:intergenic | 45.0% | |
| ! | TGGGACAAGGCTTTATGACT+AGG | - | chr1_1:11789525-11789544 | Msa0008140:intron | 45.0% |
| TCAAATAGGAGAACGCCAGA+AGG | - | chr1_1:11789660-11789679 | Msa0008140:intron | 45.0% | |
| ! | AGAACGCCAGAAGGCTTTAT+GGG | - | chr1_1:11789669-11789688 | Msa0008140:intron | 45.0% |
| GCATAACCCATAAAGCCTTC+TGG | + | chr1_1:11789678-11789697 | None:intergenic | 45.0% | |
| ATTCCCATCACCTAGAGACA+AGG | - | chr1_1:11789718-11789737 | Msa0008140:intron | 45.0% | |
| TGTCCTTGTCTCTAGGTGAT+GGG | + | chr1_1:11789724-11789743 | None:intergenic | 45.0% | |
| ! | GGTGCTGTATCATTAGATGG+CGG | - | chr1_1:11789852-11789871 | Msa0008140:intron | 45.0% |
| GGAACTCTTTCTCTTGGCTT+TGG | - | chr1_1:11789891-11789910 | Msa0008140:intron | 45.0% | |
| GTGAGCATGTGATGACTTCT+AGG | - | chr1_1:11789941-11789960 | Msa0008140:intron | 45.0% | |
| ! | TTTTCCTTGTGGGAGCAAGA+TGG | - | chr1_1:11790523-11790542 | Msa0008140:CDS | 45.0% |
| ATATCCATCTTGCTCCCACA+AGG | + | chr1_1:11790530-11790549 | None:intergenic | 45.0% | |
| AACATTTGCGTAGCTTCTGG+AGG | + | chr1_1:11790554-11790573 | None:intergenic | 45.0% | |
| TGTTCCAATGCCTCAGCAAA+AGG | + | chr1_1:11790719-11790738 | None:intergenic | 45.0% | |
| AGCATAGATGTCCCAATCTC+TGG | + | chr1_1:11790746-11790765 | None:intergenic | 45.0% | |
| GGGACATCTATGCTAGACTT+AGG | - | chr1_1:11790752-11790771 | Msa0008140:CDS | 45.0% | |
| !! | TTATAATAAATTCAATAATT+AGG | + | chr1_1:11783049-11783068 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTGTTAAT+AGG | - | chr1_1:11783339-11783358 | Msa0008140:intron | 5.0% |
| !! | TATTATAATCAAAAAAATTA+CGG | + | chr1_1:11789455-11789474 | None:intergenic | 5.0% |
| ! | GTGTTAAGGGGAGCATGTTC+AGG | - | chr1_1:11782782-11782801 | Msa0008140:intron | 50.0% |
| GAGAAGCTCGGATCATATGC+AGG | - | chr1_1:11783361-11783380 | Msa0008140:intron | 50.0% | |
| CAGGCCAATAGATATCCCAG+AGG | - | chr1_1:11783475-11783494 | Msa0008140:CDS | 50.0% | |
| !! | TCGGTGTCGATCACGCTTAT+AGG | + | chr1_1:11783572-11783591 | None:intergenic | 50.0% |
| AAGCGTGATCGACACCGAAA+AGG | - | chr1_1:11783574-11783593 | Msa0008140:CDS | 50.0% | |
| TAAACGGAGCTCGACTGTCA+TGG | + | chr1_1:11784988-11785007 | None:intergenic | 50.0% | |
| AAACCATGTGTCTGAAGGCG+TGG | - | chr1_1:11786552-11786571 | Msa0008140:intron | 50.0% | |
| ! | GTGCCTGATTTTTGTGCCAC+TGG | - | chr1_1:11787345-11787364 | Msa0008140:CDS | 50.0% |
| CCACCAGTGGCACAAAAATC+AGG | + | chr1_1:11787351-11787370 | None:intergenic | 50.0% | |
| !! | CCTGATTTTTGTGCCACTGG+TGG | - | chr1_1:11787348-11787367 | Msa0008140:CDS | 50.0% |
| !! | GTTTTCAAGCTGACCACCAG+TGG | + | chr1_1:11787364-11787383 | None:intergenic | 50.0% |
| AGAGCTGTGTCTGACTGCAA+AGG | - | chr1_1:11787605-11787624 | Msa0008140:CDS | 50.0% | |
| CTGCGCAATCTCAAGTGAGA+AGG | + | chr1_1:11788037-11788056 | None:intergenic | 50.0% | |
| CTTCTCACTTGAGATTGCGC+AGG | - | chr1_1:11788035-11788054 | Msa0008140:intron | 50.0% | |
| CAAGAGCTGTTGATGCTGCA+AGG | - | chr1_1:11788240-11788259 | Msa0008140:intron | 50.0% | |
| ! | GGTGGTGGCAAACAACAAGT+CGG | + | chr1_1:11788688-11788707 | None:intergenic | 50.0% |
| CACGTGCAGAGAGACTACAT+AGG | + | chr1_1:11788764-11788783 | None:intergenic | 50.0% | |
| !!! | AGTTTTTGGTCGGCAGGGAT+GGG | + | chr1_1:11788891-11788910 | None:intergenic | 50.0% |
| GCTGCTGAAGCAGCTAATCT+TGG | - | chr1_1:11789352-11789371 | Msa0008140:intron | 50.0% | |
| GAGAACGCCAGAAGGCTTTA+TGG | - | chr1_1:11789668-11789687 | Msa0008140:intron | 50.0% | |
| CTGTCCTTGTCTCTAGGTGA+TGG | + | chr1_1:11789725-11789744 | None:intergenic | 50.0% | |
| CCTAGAGACAAGGACAGCAT+CGG | - | chr1_1:11789728-11789747 | Msa0008140:intron | 50.0% | |
| CTAGAGACAAGGACAGCATC+GGG | - | chr1_1:11789729-11789748 | Msa0008140:intron | 50.0% | |
| ! | GAAGCCTTTTGCTGAGGCAT+TGG | - | chr1_1:11790712-11790731 | Msa0008140:CDS | 50.0% |
| CCAAGTGCTTCCTTGTTCGG+TGG | + | chr1_1:11782397-11782416 | None:intergenic | 55.0% | |
| !! | CCACCGAACAAGGAAGCACT+TGG | - | chr1_1:11782394-11782413 | Msa0008140:intron | 55.0% |
| !!! | GGTTTTGAAGGAGACCTGGG+TGG | - | chr1_1:11782854-11782873 | Msa0008140:intron | 55.0% |
| GTTTGTGCCTCGCGAGTCAA+TGG | + | chr1_1:11783741-11783760 | None:intergenic | 55.0% | |
| !!! | GAGTTTTTGGTCGGCAGGGA+TGG | + | chr1_1:11788892-11788911 | None:intergenic | 55.0% |
| CCGATGCTGTCCTTGTCTCT+AGG | + | chr1_1:11789731-11789750 | None:intergenic | 55.0% | |
| TGACGAAGCTGATGCCGGTG+AGG | - | chr1_1:11782348-11782367 | Msa0008140:intron | 60.0% | |
| GAGCGCACCCATTCTCCTCT+GGG | + | chr1_1:11783493-11783512 | None:intergenic | 60.0% | |
| AGAGCGCACCCATTCTCCTC+TGG | + | chr1_1:11783494-11783513 | None:intergenic | 60.0% | |
| CCTCGCGAGTCAATGGAAGC+AGG | + | chr1_1:11783734-11783753 | None:intergenic | 60.0% | |
| !! | CCTGCTTCCATTGACTCGCG+AGG | - | chr1_1:11783731-11783750 | Msa0008140:intron | 60.0% |
| CCTCCACGCCTTCAGACACA+TGG | + | chr1_1:11786558-11786577 | None:intergenic | 60.0% | |
| ! | CCATGTGTCTGAAGGCGTGG+AGG | - | chr1_1:11786555-11786574 | Msa0008140:intron | 60.0% |
| ATTGGGGTCGTTGCCCTCCT+TGG | - | chr1_1:11788816-11788835 | Msa0008140:intron | 60.0% | |
| TTGGTCGGCAGGGATGGGAA+AGG | + | chr1_1:11788886-11788905 | None:intergenic | 60.0% | |
| ! | ACAAGGACAGCATCGGGCCA+TGG | - | chr1_1:11789735-11789754 | Msa0008140:intron | 60.0% |
| ! | CAAGGACAGCATCGGGCCAT+GGG | - | chr1_1:11789736-11789755 | Msa0008140:intron | 60.0% |
| GAACGGTCTCACGAAGCCCA+TGG | + | chr1_1:11789755-11789774 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 11782064 | 11790781 | 11782064 | ID=Msa0008140;Name=Msa0008140 |
| chr1_1 | mRNA | 11782064 | 11790781 | 11782064 | ID=Msa0008140-mRNA-1;Parent=Msa0008140;Name=Msa0008140-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.33|0.26|1|1|1|19|0|913 |
| chr1_1 | exon | 11790694 | 11790781 | 11790694 | ID=Msa0008140-mRNA-1:exon:4472;Parent=Msa0008140-mRNA-1 |
| chr1_1 | exon | 11790415 | 11790600 | 11790415 | ID=Msa0008140-mRNA-1:exon:4471;Parent=Msa0008140-mRNA-1 |
| chr1_1 | exon | 11789970 | 11790128 | 11789970 | ID=Msa0008140-mRNA-1:exon:4470;Parent=Msa0008140-mRNA-1 |
| chr1_1 | exon | 11789463 | 11789484 | 11789463 | ID=Msa0008140-mRNA-1:exon:4469;Parent=Msa0008140-mRNA-1 |
| chr1_1 | exon | 11789250 | 11789367 | 11789250 | ID=Msa0008140-mRNA-1:exon:4468;Parent=Msa0008140-mRNA-1 |
| chr1_1 | exon | 11788060 | 11788169 | 11788060 | ID=Msa0008140-mRNA-1:exon:4467;Parent=Msa0008140-mRNA-1 |
| chr1_1 | exon | 11787725 | 11787905 | 11787725 | ID=Msa0008140-mRNA-1:exon:4466;Parent=Msa0008140-mRNA-1 |
| chr1_1 | exon | 11787536 | 11787644 | 11787536 | ID=Msa0008140-mRNA-1:exon:4465;Parent=Msa0008140-mRNA-1 |
| chr1_1 | exon | 11787345 | 11787439 | 11787345 | ID=Msa0008140-mRNA-1:exon:4464;Parent=Msa0008140-mRNA-1 |
| chr1_1 | exon | 11786212 | 11786310 | 11786212 | ID=Msa0008140-mRNA-1:exon:4463;Parent=Msa0008140-mRNA-1 |
| chr1_1 | exon | 11785971 | 11786037 | 11785971 | ID=Msa0008140-mRNA-1:exon:4462;Parent=Msa0008140-mRNA-1 |
| chr1_1 | exon | 11785601 | 11785686 | 11785601 | ID=Msa0008140-mRNA-1:exon:4461;Parent=Msa0008140-mRNA-1 |
| chr1_1 | exon | 11785219 | 11785500 | 11785219 | ID=Msa0008140-mRNA-1:exon:4460;Parent=Msa0008140-mRNA-1 |
| chr1_1 | exon | 11785006 | 11785146 | 11785006 | ID=Msa0008140-mRNA-1:exon:4459;Parent=Msa0008140-mRNA-1 |
| chr1_1 | exon | 11784671 | 11784695 | 11784671 | ID=Msa0008140-mRNA-1:exon:4458;Parent=Msa0008140-mRNA-1 |
| chr1_1 | exon | 11783980 | 11784166 | 11783980 | ID=Msa0008140-mRNA-1:exon:4457;Parent=Msa0008140-mRNA-1 |
| chr1_1 | exon | 11783423 | 11783617 | 11783423 | ID=Msa0008140-mRNA-1:exon:4456;Parent=Msa0008140-mRNA-1 |
| chr1_1 | exon | 11782932 | 11783249 | 11782932 | ID=Msa0008140-mRNA-1:exon:4455;Parent=Msa0008140-mRNA-1 |
| chr1_1 | exon | 11782064 | 11782337 | 11782064 | ID=Msa0008140-mRNA-1:exon:4454;Parent=Msa0008140-mRNA-1 |
| chr1_1 | CDS | 11790694 | 11790781 | 11790694 | ID=Msa0008140-mRNA-1:cds;Parent=Msa0008140-mRNA-1 |
| chr1_1 | CDS | 11790415 | 11790600 | 11790415 | ID=Msa0008140-mRNA-1:cds;Parent=Msa0008140-mRNA-1 |
| chr1_1 | CDS | 11789970 | 11790128 | 11789970 | ID=Msa0008140-mRNA-1:cds;Parent=Msa0008140-mRNA-1 |
| chr1_1 | CDS | 11789463 | 11789484 | 11789463 | ID=Msa0008140-mRNA-1:cds;Parent=Msa0008140-mRNA-1 |
| chr1_1 | CDS | 11789250 | 11789367 | 11789250 | ID=Msa0008140-mRNA-1:cds;Parent=Msa0008140-mRNA-1 |
| chr1_1 | CDS | 11788060 | 11788169 | 11788060 | ID=Msa0008140-mRNA-1:cds;Parent=Msa0008140-mRNA-1 |
| chr1_1 | CDS | 11787725 | 11787905 | 11787725 | ID=Msa0008140-mRNA-1:cds;Parent=Msa0008140-mRNA-1 |
| chr1_1 | CDS | 11787536 | 11787644 | 11787536 | ID=Msa0008140-mRNA-1:cds;Parent=Msa0008140-mRNA-1 |
| chr1_1 | CDS | 11787345 | 11787439 | 11787345 | ID=Msa0008140-mRNA-1:cds;Parent=Msa0008140-mRNA-1 |
| chr1_1 | CDS | 11786212 | 11786310 | 11786212 | ID=Msa0008140-mRNA-1:cds;Parent=Msa0008140-mRNA-1 |
| chr1_1 | CDS | 11785971 | 11786037 | 11785971 | ID=Msa0008140-mRNA-1:cds;Parent=Msa0008140-mRNA-1 |
| chr1_1 | CDS | 11785601 | 11785686 | 11785601 | ID=Msa0008140-mRNA-1:cds;Parent=Msa0008140-mRNA-1 |
| chr1_1 | CDS | 11785219 | 11785500 | 11785219 | ID=Msa0008140-mRNA-1:cds;Parent=Msa0008140-mRNA-1 |
| chr1_1 | CDS | 11785006 | 11785146 | 11785006 | ID=Msa0008140-mRNA-1:cds;Parent=Msa0008140-mRNA-1 |
| chr1_1 | CDS | 11784671 | 11784695 | 11784671 | ID=Msa0008140-mRNA-1:cds;Parent=Msa0008140-mRNA-1 |
| chr1_1 | CDS | 11783980 | 11784166 | 11783980 | ID=Msa0008140-mRNA-1:cds;Parent=Msa0008140-mRNA-1 |
| chr1_1 | CDS | 11783423 | 11783617 | 11783423 | ID=Msa0008140-mRNA-1:cds;Parent=Msa0008140-mRNA-1 |
| chr1_1 | CDS | 11782932 | 11783249 | 11782932 | ID=Msa0008140-mRNA-1:cds;Parent=Msa0008140-mRNA-1 |
| chr1_1 | CDS | 11782064 | 11782337 | 11782064 | ID=Msa0008140-mRNA-1:cds;Parent=Msa0008140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
