AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0015090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0015090 MtrunA17_Chr4g0057301 96.429 588 13 2 1 588 1 580 0.0 1131
Msa0015090 MtrunA17_Chr8g0350381 41.743 218 121 3 372 588 323 535 1.01e-44 166
Msa0015090 MtrunA17_Chr8g0350381 34.028 288 137 15 1 266 36 292 1.97e-20 95.1
Msa0015090 MtrunA17_Chr4g0058781 31.138 167 101 5 432 586 206 370 3.31e-13 71.6
Msa0015090 MtrunA17_Chr1g0188921 31.746 189 88 5 429 587 288 465 2.04e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0015090 AT4G11740.1 47.876 612 247 17 1 588 1 564 4.54e-137 410
Msa0015090 AT4G23040.1 45.805 596 244 17 1 588 1 525 3.47e-121 369
Msa0015090 AT4G11740.2 43.470 513 218 16 1 489 1 465 5.09e-89 284
Msa0015090 AT4G00752.1 53.846 117 47 1 472 588 359 468 1.05e-32 131
Msa0015090 AT4G00752.1 28.883 412 208 12 1 395 1 344 1.47e-28 119
Msa0015090 AT4G10790.1 31.953 169 86 5 438 587 321 479 3.90e-13 72.4

Find 174 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAAAGCTTCTTGCTTAT+TGG 0.125120 1_1:-24431636 None:intergenic
AACAATAACCGTATCTAAAT+TGG 0.200110 1_1:-24431960 None:intergenic
TGCGGAGGACTGCTGCTTTC+CGG 0.215239 1_1:-24430407 None:intergenic
CCTGGAGCTTATGAGATCTT+AGG 0.219787 1_1:-24431284 None:intergenic
GTAGGATCAATAAGAGAAAA+TGG 0.285471 1_1:-24429236 None:intergenic
ATGATGAAACAAAGAGGATT+TGG 0.297214 1_1:-24427787 None:intergenic
GGCGATAACCACTTCCTTCC+GGG 0.309185 1_1:-24430628 None:intergenic
CGCCCACGACGGCTGCCATC+TGG 0.310057 1_1:-24431255 None:intergenic
CCAATAGTTGAAGATGTTAC+TGG 0.310930 1_1:+24429395 Msa0015090:CDS
CCAGTAACATCTTCAACTAT+TGG 0.316434 1_1:-24429395 None:intergenic
TCTCTTATTGATCCTACAAT+TGG 0.317933 1_1:+24429242 Msa0015090:CDS
TCTATGTCATTGCTGCTATC+TGG 0.323869 1_1:-24429560 None:intergenic
GTGCAGGACGTGAGTGAATC+TGG 0.324522 1_1:+24429743 Msa0015090:intron
TGCAGTTTCATTGTCCTTGA+AGG 0.329311 1_1:+24429811 Msa0015090:CDS
ATTGGATTTAAATTATTTGC+AGG 0.348056 1_1:-24431942 None:intergenic
GGAATTTGCCTTACCTCTCT+TGG 0.348395 1_1:-24429323 None:intergenic
ACATGAGTTCATGCAGAATA+GGG 0.354183 1_1:+24430664 Msa0015090:CDS
ATGACACTCCCATGTATATC+TGG 0.359077 1_1:-24429437 None:intergenic
AGTATACTTCTCCCAATTGT+AGG 0.369406 1_1:-24429254 None:intergenic
CCCATGTATATCTGGACCTT+GGG 0.371893 1_1:-24429429 None:intergenic
CATCTTCAACTATTGGAATA+TGG 0.374805 1_1:-24429388 None:intergenic
ATTCGTGGATGCTTTGTTGT+AGG 0.381356 1_1:+24431846 Msa0015090:three_prime_UTR
AGAATCTCAAAGAAAGTTGC+AGG 0.386414 1_1:+24430979 Msa0015090:CDS
CACATGAGTTCATGCAGAAT+AGG 0.393615 1_1:+24430663 Msa0015090:CDS
CGGCGATAACCACTTCCTTC+CGG 0.398155 1_1:-24430629 None:intergenic
TGTTGTGCCTGCCAGTGTGC+TGG 0.398181 1_1:-24430381 None:intergenic
TCACCCTCCTTCACCATCAT+TGG 0.401882 1_1:+24430718 Msa0015090:CDS
TGGTACTGTGGTAGTAAATA+TGG 0.401964 1_1:+24430212 Msa0015090:intron
AAAAGTGATTGCCTTGGGTT+AGG 0.405676 1_1:-24429767 None:intergenic
TCAACTCCTTGTGTCTTAGA+TGG 0.413557 1_1:-24430056 None:intergenic
ATATGGTCATTGTAGATTGC+AGG 0.414538 1_1:+24430229 Msa0015090:CDS
CCAAAGGCACGCCTAGGATA+TGG 0.415543 1_1:-24431572 None:intergenic
CTCTCGTCTGGATGCCTCAA+TGG 0.415695 1_1:-24429603 None:intergenic
GTGTCAATCGTCTCTTGATT+AGG 0.417630 1_1:-24427860 None:intergenic
CGTTCCCCAAGGAGATTTCA+TGG 0.423137 1_1:+24429145 Msa0015090:CDS
TCATCATCAGAGGATGGTTC+TGG 0.423795 1_1:-24431204 None:intergenic
TATATCCATGAAATCTCCTT+GGG 0.423971 1_1:-24429150 None:intergenic
CTCTTATTGATCCTACAATT+GGG 0.431169 1_1:+24429243 Msa0015090:CDS
TGGAGGCTCAGCGCTTGATA+AGG 0.432269 1_1:+24430738 Msa0015090:CDS
AGACACAAGGAGTTGACTTA+GGG 0.445695 1_1:+24430063 Msa0015090:CDS
TAGAGGAGATGCCTTTGGTT+AGG 0.447607 1_1:+24430291 Msa0015090:CDS
AACTTAAAGGTGTACCTTCA+AGG 0.447852 1_1:-24429825 None:intergenic
CTCACCAGTCTGTAACTGCT+TGG 0.449344 1_1:-24431437 None:intergenic
AGATGCCTTTGGTTAGGAAC+AGG 0.451031 1_1:+24430297 Msa0015090:CDS
CCTCTAAAAGTGATTGCCTT+GGG 0.451247 1_1:-24429772 None:intergenic
CCATATCCTAGGCGTGCCTT+TGG 0.452267 1_1:+24431572 Msa0015090:CDS
TGGTGGTAGAGAGACTTCTT+TGG 0.454142 1_1:-24431184 None:intergenic
CGAAGGAGACAGAAATTTGA+TGG 0.458140 1_1:+24428965 Msa0015090:CDS
GATGAGTGACAAACGGCGCC+TGG 0.460210 1_1:-24429301 None:intergenic
TTGGATTTAAATTATTTGCA+GGG 0.460676 1_1:-24431941 None:intergenic
GGAGGCTCAGCGCTTGATAA+GGG 0.466359 1_1:+24430739 Msa0015090:CDS
AAGAAAGTTGCAGGAAGAGC+AGG 0.467946 1_1:+24430988 Msa0015090:CDS
GCAAATTCCGATAGAGGATA+AGG 0.469648 1_1:+24429337 Msa0015090:CDS
GCGCTTGATAAGGGAACAAC+AGG 0.471422 1_1:+24430748 Msa0015090:CDS
CTATATCCATGAAATCTCCT+TGG 0.473947 1_1:-24429151 None:intergenic
AAGACACAAGGAGTTGACTT+AGG 0.474030 1_1:+24430062 Msa0015090:CDS
TCACTTAGCTCCACAGGGTC+AGG 0.475192 1_1:+24430335 Msa0015090:CDS
CCCTCCTTCACCATCATTGG+AGG 0.475775 1_1:+24430721 Msa0015090:CDS
TGCAATGTTCGGTGGAATCC+CGG 0.476007 1_1:+24430610 Msa0015090:CDS
AGTATACTTGATACTCATCT+TGG 0.477017 1_1:+24429269 Msa0015090:CDS
CTTCATAGATATTGGTAGAC+AGG 0.477272 1_1:+24431409 Msa0015090:CDS
ATGCTTGAGGCTGCAATGTT+CGG 0.477862 1_1:+24430599 Msa0015090:CDS
GATGCTGGAGCACCTACGGC+AGG 0.478392 1_1:+24430032 Msa0015090:CDS
AGATGTAGAGGAGATGCCTT+TGG 0.483061 1_1:+24430286 Msa0015090:CDS
ACTTATCATGGAAATATTCG+TGG 0.488746 1_1:+24431831 Msa0015090:three_prime_UTR
GGTAAGGCAAATTCCGATAG+AGG 0.489342 1_1:+24429331 Msa0015090:CDS
AATTGCACTGCAAAAGCTTC+AGG 0.492758 1_1:+24427913 Msa0015090:CDS
CTTCTAAACTCTACGGCGTA+CGG 0.493880 1_1:+24427704 Msa0015090:five_prime_UTR
GGGTGATATGCAAGAGGTGC+GGG 0.494974 1_1:-24430701 None:intergenic
CATGTGTCACTTAGCTCCAC+AGG 0.497077 1_1:+24430329 Msa0015090:CDS
TTAGGGGAAGTATCTTCAAA+TGG 0.499966 1_1:+24430080 Msa0015090:CDS
ACTGGCAGGCACAACAGTTC+CGG 0.502879 1_1:+24430388 Msa0015090:CDS
CTACCATCCTTATCCTCTAT+CGG 0.505961 1_1:-24429344 None:intergenic
TCCCATGTATATCTGGACCT+TGG 0.507661 1_1:-24429430 None:intergenic
TTCTCCAATGTGGGAGCACT+AGG 0.508488 1_1:-24429533 None:intergenic
TCCTCTAAAAGTGATTGCCT+TGG 0.509045 1_1:-24429773 None:intergenic
GGTGAAGAATTAGTCGGAGC+AGG 0.510649 1_1:-24429494 None:intergenic
TGAAGAAGATGAAGATGTAG+AGG 0.512456 1_1:+24430274 Msa0015090:CDS
ATGCCAGATGGCAGCCGTCG+TGG 0.515721 1_1:+24431252 Msa0015090:CDS
CAAGAGGTGCGGGCTGAGGA+TGG 0.523670 1_1:-24430691 None:intergenic
CTAGGTCTCGCACTACTGTC+AGG 0.525591 1_1:-24429515 None:intergenic
TAGGCGTGCCTTTGGTGTTG+AGG 0.525926 1_1:+24431580 Msa0015090:CDS
GACACATTCATCAGCATCAC+CGG 0.531398 1_1:+24427878 Msa0015090:CDS
GAAACTGCACGAGCAAGCTC+AGG 0.531446 1_1:-24429797 None:intergenic
GCTTATGAGATCTTAGGAAT+CGG 0.531602 1_1:-24431278 None:intergenic
ATTATTTGCAGGGGAAGAGA+TGG 0.532664 1_1:-24431931 None:intergenic
TGCCAGATGGCAGCCGTCGT+GGG 0.532912 1_1:+24431253 Msa0015090:CDS
CCTAAGATCTCATAAGCTCC+AGG 0.534553 1_1:+24431284 Msa0015090:CDS
AGCATCTTTGCCTGACCCTG+TGG 0.535288 1_1:-24430345 None:intergenic
GGCATCCAGACGAGAGGCTG+AGG 0.536461 1_1:+24429610 Msa0015090:CDS
AAGGACTATACTTCATCAGA+TGG 0.537129 1_1:-24430446 None:intergenic
CGTGTACAAGAAGGTGATGC+TGG 0.537918 1_1:+24430017 Msa0015090:CDS
CTTGCAAAAGATAAAAGAGA+TGG 0.538424 1_1:-24429203 None:intergenic
TGAGGAAAGTGCTGTGACAT+TGG 0.539969 1_1:+24431598 Msa0015090:CDS
GAGACAGAAATTTGATGGCC+AGG 0.541997 1_1:+24428970 Msa0015090:CDS
ATCGAGTCCAGCACACTGGC+AGG 0.544729 1_1:+24430374 Msa0015090:CDS
AAGCGCTGAGCCTCCAATGA+TGG 0.546680 1_1:-24430731 None:intergenic
GGTGGAATCCCGGAAGGAAG+TGG 0.546810 1_1:+24430620 Msa0015090:CDS
CATGAAATCTCCTTGGGGAA+CGG 0.548281 1_1:-24429144 None:intergenic
AATATCAAATCATGTTCAAG+TGG 0.556375 1_1:-24427729 None:intergenic
GCTGTGACATTGGACGAACT+TGG 0.558529 1_1:+24431608 Msa0015090:CDS
AGGTGATGCTGGAGCACCTA+CGG 0.559902 1_1:+24430028 Msa0015090:CDS
CTATACTTCATCAGATGGGA+AGG 0.562623 1_1:-24430441 None:intergenic
TCTCTTGGATGAGTGACAAA+CGG 0.564540 1_1:-24429308 None:intergenic
TATCATTCTTCTAAACTCTA+CGG 0.567389 1_1:+24427697 Msa0015090:five_prime_UTR
AGCAACCTCAGCTTCCGCAA+TGG 0.570576 1_1:-24430930 None:intergenic
AGCTCTGCCGCCGTTCCCCA+AGG 0.572207 1_1:+24429134 Msa0015090:intron
TTTCAATATTTACAGTGGGG+TGG 0.572452 1_1:+24430545 Msa0015090:intron
ATCTGGTAAATTCTCCAATG+TGG 0.573046 1_1:-24429543 None:intergenic
GTTAATGCATATTTCAGCGA+AGG 0.573755 1_1:+24428948 Msa0015090:CDS
GATTGCGATTTCGATTTCCA+TGG 0.575402 1_1:+24427832 Msa0015090:exon
GCCCAAGGTCCAGATATACA+TGG 0.578375 1_1:+24429428 Msa0015090:CDS
CAAACCAAGCAGTTACAGAC+TGG 0.578668 1_1:+24431433 Msa0015090:CDS
TATGCAAGAGGTGCGGGCTG+AGG 0.580181 1_1:-24430695 None:intergenic
AGTCAATCAACTCCTCAAGC+TGG 0.583922 1_1:+24429365 Msa0015090:CDS
CTCTTGATTAGGTGTCGCCA+TGG 0.585370 1_1:-24427849 None:intergenic
GGGAAGTATCTTCAAATGGA+AGG 0.585921 1_1:+24430084 Msa0015090:CDS
TGCAGGACGTGAGTGAATCT+GGG 0.588133 1_1:+24429744 Msa0015090:intron
GTGGGGTGGCATGTCTTCAG+TGG 0.588272 1_1:+24430559 Msa0015090:intron
CATGAGTTCATGCAGAATAG+GGG 0.589737 1_1:+24430665 Msa0015090:CDS
TCACTCATCCAAGAGAGGTA+AGG 0.590566 1_1:+24429315 Msa0015090:CDS
AATGATTCGTGCAGCCATTG+AGG 0.594407 1_1:+24429589 Msa0015090:CDS
TCATCTTGGTGCAACAAACC+AGG 0.596500 1_1:+24429283 Msa0015090:CDS
ACTGGAACTGTTCATGCCCA+AGG 0.596583 1_1:+24429413 Msa0015090:CDS
TGCAATTGGTTGAGAAACAC+CGG 0.598757 1_1:-24427897 None:intergenic
GAAGGCCATTGCGGAAGCTG+AGG 0.599946 1_1:+24430925 Msa0015090:CDS
CACAGCACTGTCATCATCAG+AGG 0.600630 1_1:-24431214 None:intergenic
GTCTTAGATGGCCCTGCCGT+AGG 0.601129 1_1:-24430044 None:intergenic
TCTGGTAAATTCTCCAATGT+GGG 0.601343 1_1:-24429542 None:intergenic
GCAAAAGATAAAAGAGATGG+AGG 0.602367 1_1:-24429200 None:intergenic
TCAACACCAAAGGCACGCCT+AGG 0.602812 1_1:-24431578 None:intergenic
ACTCATGTGGTGCATAAGCA+CGG 0.608070 1_1:-24430649 None:intergenic
TTGATGATGATGAAACAAAG+AGG 0.609697 1_1:-24427793 None:intergenic
TGGATTTAAATTATTTGCAG+GGG 0.611208 1_1:-24431940 None:intergenic
TGTCTGCTTCTAATGATGCA+AGG 0.612016 1_1:-24430889 None:intergenic
AAAGCACGGCGTGTACAAGA+AGG 0.613259 1_1:+24430008 Msa0015090:CDS
AGCTGAGGTTGCTCGCGAAG+AGG 0.613437 1_1:+24430940 Msa0015090:CDS
GGTCATTGTAGATTGCAGGC+AGG 0.615122 1_1:+24430233 Msa0015090:CDS
TGAGCCTCCAATGATGGTGA+AGG 0.617026 1_1:-24430725 None:intergenic
CTTGAGGCTGCAATGTTCGG+TGG 0.621722 1_1:+24430602 Msa0015090:CDS
GAAATCTCCTTGGGGAACGG+CGG 0.621741 1_1:-24429141 None:intergenic
ATGCTGGAGCACCTACGGCA+GGG 0.622987 1_1:+24430033 Msa0015090:CDS
ATTGGAATATGGCCAGCTTG+AGG 0.623410 1_1:-24429377 None:intergenic
GTAGACCTGTTCCTAACCAA+AGG 0.623848 1_1:-24430302 None:intergenic
GCCTCCAATGATGGTGAAGG+AGG 0.625027 1_1:-24430722 None:intergenic
TTAGGAATCGGCGCCCACGA+CGG 0.625136 1_1:-24431266 None:intergenic
GGCAGGTAAGACCATATCCT+AGG 0.626242 1_1:+24431561 Msa0015090:intron
AGCACTTTCCTCAACACCAA+AGG 0.630829 1_1:-24431588 None:intergenic
AGGGTGATATGCAAGAGGTG+CGG 0.631640 1_1:-24430702 None:intergenic
AAAAGAATTGAAGGCCATTG+CGG 0.632012 1_1:+24430916 Msa0015090:CDS
GTGAATCTGGGCCTAACCCA+AGG 0.632081 1_1:+24429756 Msa0015090:CDS
CTGTCAGGTGAAGAATTAGT+CGG 0.632592 1_1:-24429500 None:intergenic
AGGACTATACTTCATCAGAT+GGG 0.635714 1_1:-24430445 None:intergenic
ATTAATCGAGTCCAGCACAC+TGG 0.635866 1_1:+24430370 Msa0015090:CDS
ATATCAAATCATGTTCAAGT+GGG 0.636947 1_1:-24427728 None:intergenic
CCCAAGGTCCAGATATACAT+GGG 0.639087 1_1:+24429429 Msa0015090:CDS
ATGTTCGGTGGAATCCCGGA+AGG 0.645721 1_1:+24430614 Msa0015090:CDS
GCACTGTCATCATCAGAGGA+TGG 0.645765 1_1:-24431210 None:intergenic
TCATCAGAGGATGGTTCTGG+TGG 0.646164 1_1:-24431201 None:intergenic
GGGAAGGAATTGTCATTATG+CGG 0.648088 1_1:-24430425 None:intergenic
GAGACCTAGTGCTCCCACAT+TGG 0.648732 1_1:+24429529 Msa0015090:CDS
CTATTCTGCATGAACTCATG+TGG 0.657273 1_1:-24430662 None:intergenic
GACACAAGGAGTTGACTTAG+GGG 0.664345 1_1:+24430064 Msa0015090:CDS
ATTCCGATAGAGGATAAGGA+TGG 0.664553 1_1:+24429341 Msa0015090:CDS
AAGGAATTGTCATTATGCGG+AGG 0.670479 1_1:-24430422 None:intergenic
CATTGAGGCATCCAGACGAG+AGG 0.670635 1_1:+24429604 Msa0015090:CDS
TGACAGTGCTGTGAATCTGA+TGG 0.684961 1_1:+24431224 Msa0015090:CDS
GTTTGTCACTCATCCAAGAG+AGG 0.689319 1_1:+24429310 Msa0015090:CDS
ATGTGTCACTTAGCTCCACA+GGG 0.692890 1_1:+24430330 Msa0015090:CDS
ATATCCATGAAATCTCCTTG+GGG 0.695995 1_1:-24429149 None:intergenic
GCAGGGCCATCTAAGACACA+AGG 0.699427 1_1:+24430050 Msa0015090:CDS
CCTCCAATGATGGTGAAGGA+GGG 0.700161 1_1:-24430721 None:intergenic
GAAGGAGGGTGATATGCAAG+AGG 0.710406 1_1:-24430707 None:intergenic
TGATGAAGCAGTAATGCTTG+AGG 0.722177 1_1:+24430586 Msa0015090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATTTATTAAAATGTCT+TGG + chr1_1:24428199-24428218 Msa0015090:intron 10.0%
!! AATAAGATAATTTAAAAACA+AGG - chr1_1:24428409-24428428 None:intergenic 10.0%
!!! TGACTTTATTTTTTTTATAT+TGG + chr1_1:24429928-24429947 Msa0015090:intron 10.0%
!!! TTTTTTTTATATTGGAAATT+TGG + chr1_1:24429936-24429955 Msa0015090:intron 10.0%
!!! TTTGTAAACATTTTTTTTCA+TGG + chr1_1:24428895-24428914 Msa0015090:intron 15.0%
!!! ATTGTTTTTTTTGATATTGA+TGG + chr1_1:24429096-24429115 Msa0015090:intron 15.0%
!!! TATTTCTTAATTGTTTTTTC+CGG + chr1_1:24429675-24429694 Msa0015090:intron 15.0%
!! AATACAACATATAAAATTAG+AGG - chr1_1:24429704-24429723 None:intergenic 15.0%
!! AAAAAATAAAGTCAAAGTTA+CGG - chr1_1:24429922-24429941 None:intergenic 15.0%
!!! TAATTTTCAATATTTACAGT+GGG + chr1_1:24430541-24430560 Msa0015090:intron 15.0%
!!! AATTTTAAGATAAGAATGAT+AGG - chr1_1:24431479-24431498 None:intergenic 15.0%
!!! TGATTTGATATTTTTCAGTT+CGG + chr1_1:24427740-24427759 Msa0015090:five_prime_UTR 20.0%
!!! ACAAATTGTTATTACTCTTT+AGG + chr1_1:24427964-24427983 Msa0015090:intron 20.0%
!! TTATGGTTTATCTAATCAAT+AGG + chr1_1:24428027-24428046 Msa0015090:intron 20.0%
!! TATGGTTTATCTAATCAATA+GGG + chr1_1:24428028-24428047 Msa0015090:intron 20.0%
!! AACAAAGCAATATTAAATCT+AGG - chr1_1:24428365-24428384 None:intergenic 20.0%
!! TCAACAATATAAGAAACTAA+TGG - chr1_1:24428682-24428701 None:intergenic 20.0%
!! TATGAGAAAGTAAACAATAT+CGG - chr1_1:24428811-24428830 None:intergenic 20.0%
!! ATAGAATAAGTTCTCTTTAA+TGG + chr1_1:24428841-24428860 Msa0015090:intron 20.0%
!! CAAAAAAAACAATGATGAAT+GGG - chr1_1:24429089-24429108 None:intergenic 20.0%
!! TCAAAAAAAACAATGATGAA+TGG - chr1_1:24429090-24429109 None:intergenic 20.0%
!! GGAAAAAACAATTAAGAAAT+AGG - chr1_1:24429676-24429695 None:intergenic 20.0%
!!! ATTTCTTAATTGTTTTTTCC+GGG + chr1_1:24429676-24429695 Msa0015090:intron 20.0%
!! CACTGTAAATATTGAAAATT+AGG - chr1_1:24430542-24430561 None:intergenic 20.0%
!!! CTAATTTTCAATATTTACAG+TGG + chr1_1:24430540-24430559 Msa0015090:intron 20.0%
!!! AATTTTCAATATTTACAGTG+GGG + chr1_1:24430542-24430561 Msa0015090:intron 20.0%
!!! CATCATTTTTCTGAATAATT+AGG - chr1_1:24431507-24431526 None:intergenic 20.0%
!!! TTTTTTTGTTTTGTTTCTGT+TGG + chr1_1:24431528-24431547 Msa0015090:intron 20.0%
!! TTGGATTTAAATTATTTGCA+GGG - chr1_1:24431944-24431963 None:intergenic 20.0%
!! ATTGGATTTAAATTATTTGC+AGG - chr1_1:24431945-24431964 None:intergenic 20.0%
!!! TTTTTGAGGGTTAATATGTA+AGG - chr1_1:24427664-24427683 None:intergenic 25.0%
! TATCATTCTTCTAAACTCTA+CGG + chr1_1:24427697-24427716 Msa0015090:five_prime_UTR 25.0%
! ATATCAAATCATGTTCAAGT+GGG - chr1_1:24427731-24427750 None:intergenic 25.0%
! AATATCAAATCATGTTCAAG+TGG - chr1_1:24427732-24427751 None:intergenic 25.0%
! TGTAATCAGAAAAGTGAATA+AGG - chr1_1:24427947-24427966 None:intergenic 25.0%
!! AGCGATTGAATTTTCAATTA+TGG + chr1_1:24428010-24428029 Msa0015090:intron 25.0%
!! GAAAATTGTATTTTTCTCTC+TGG + chr1_1:24428089-24428108 Msa0015090:intron 25.0%
!! TATTTGTTGAATGATCAATG+AGG + chr1_1:24428117-24428136 Msa0015090:intron 25.0%
! TATAATCAGTTCTATGATGT+TGG + chr1_1:24428251-24428270 Msa0015090:intron 25.0%
!!! TTATTGCTGATTTCTGAATT+TGG + chr1_1:24428383-24428402 Msa0015090:intron 25.0%
! AAACAAGAAGAAAACTGTAA+TGG - chr1_1:24428435-24428454 None:intergenic 25.0%
! AAAAATAAGCTAATCCAAAC+AGG - chr1_1:24428518-24428537 None:intergenic 25.0%
! AAAAATGTTTACAAATGCAG+AGG - chr1_1:24428890-24428909 None:intergenic 25.0%
!!! TAAACATTTTTTTTCATGGC+AGG + chr1_1:24428899-24428918 Msa0015090:intron 25.0%
!!! TTTTTTTTGATATTGATGGC+CGG + chr1_1:24429100-24429119 Msa0015090:intron 25.0%
!!! ATTAATTTGTATTTCCCACA+TGG + chr1_1:24429721-24429740 Msa0015090:intron 25.0%
! AATAAGAGAACACAACTTAA+AGG - chr1_1:24429841-24429860 None:intergenic 25.0%
! TTTGACTGTTATATATGACA+TGG + chr1_1:24430192-24430211 Msa0015090:intron 25.0%
! TCTGAAAATTCATAAAGTGA+AGG - chr1_1:24430468-24430487 None:intergenic 25.0%
!! CACTTTATGAATTTTCAGAA+CGG + chr1_1:24430469-24430488 Msa0015090:intron 25.0%
!! ACTTTATGAATTTTCAGAAC+GGG + chr1_1:24430470-24430489 Msa0015090:intron 25.0%
! TAGGTTAAAGTTTCTTACAT+AGG + chr1_1:24430789-24430808 Msa0015090:intron 25.0%
! TAAATCTGTAACTAATTGCA+TGG + chr1_1:24431017-24431036 Msa0015090:intron 25.0%
! TTCATTGCAATTAGTTATAC+TGG + chr1_1:24431044-24431063 Msa0015090:intron 25.0%
! TAGAAATCAAATTCCCATTT+CGG + chr1_1:24431105-24431124 Msa0015090:intron 25.0%
!! AAAAGAGACTGAAAATTTTC+AGG - chr1_1:24431386-24431405 None:intergenic 25.0%
! TGGATTTAAATTATTTGCAG+GGG - chr1_1:24431943-24431962 None:intergenic 25.0%
!!! GTAGTTTCTGTTGTTTTTGA+GGG - chr1_1:24427677-24427696 None:intergenic 30.0%
!!! AGTAGTTTCTGTTGTTTTTG+AGG - chr1_1:24427678-24427697 None:intergenic 30.0%
!!! GAGGATTTGGTTTTGTTTTT+GGG - chr1_1:24427777-24427796 None:intergenic 30.0%
!!! AGAGGATTTGGTTTTGTTTT+TGG - chr1_1:24427778-24427797 None:intergenic 30.0%
ATGATGAAACAAAGAGGATT+TGG - chr1_1:24427790-24427809 None:intergenic 30.0%
!! TTGATGATGATGAAACAAAG+AGG - chr1_1:24427796-24427815 None:intergenic 30.0%
CAGAAAAGTGAATAAGGAAA+AGG - chr1_1:24427941-24427960 None:intergenic 30.0%
ACTTATGCAAGTAGTTATCT+CGG + chr1_1:24428481-24428500 Msa0015090:intron 30.0%
TAGTTATCTCGGATGATTTA+GGG + chr1_1:24428492-24428511 Msa0015090:intron 30.0%
TATTATTCATAAGCTTGTCG+AGG + chr1_1:24428581-24428600 Msa0015090:intron 30.0%
TAAGAAACTAATGGCATGTT+TGG - chr1_1:24428673-24428692 None:intergenic 30.0%
TAAGTTCTCTTTAATGGTGT+TGG + chr1_1:24428847-24428866 Msa0015090:intron 30.0%
TGCTTCTAATGCATGAAAAA+AGG - chr1_1:24429000-24429019 None:intergenic 30.0%
TATATCCATGAAATCTCCTT+GGG - chr1_1:24429153-24429172 None:intergenic 30.0%
CTTGCAAAAGATAAAAGAGA+TGG - chr1_1:24429206-24429225 None:intergenic 30.0%
GTAGGATCAATAAGAGAAAA+TGG - chr1_1:24429239-24429258 None:intergenic 30.0%
TCTCTTATTGATCCTACAAT+TGG + chr1_1:24429242-24429261 Msa0015090:CDS 30.0%
CTCTTATTGATCCTACAATT+GGG + chr1_1:24429243-24429262 Msa0015090:CDS 30.0%
AGTATACTTGATACTCATCT+TGG + chr1_1:24429269-24429288 Msa0015090:CDS 30.0%
CATCTTCAACTATTGGAATA+TGG - chr1_1:24429391-24429410 None:intergenic 30.0%
TTATATATGACATGGTACTG+TGG + chr1_1:24430200-24430219 Msa0015090:intron 30.0%
!! GTGTCACTTATTTCTTACAT+AGG + chr1_1:24430770-24430789 Msa0015090:intron 30.0%
CTTACATAGGTTAAAGTTAC+AGG + chr1_1:24430802-24430821 Msa0015090:intron 30.0%
TGTCTATGTTTATTTGATGC+AGG + chr1_1:24430856-24430875 Msa0015090:intron 30.0%
AGACAGAGAAAAAGAATTGA+AGG + chr1_1:24430907-24430926 Msa0015090:CDS 30.0%
ATCAAACTCATACTTTCCTA+TGG + chr1_1:24431081-24431100 Msa0015090:intron 30.0%
! GGAATTTGATTTCTATCCAT+AGG - chr1_1:24431100-24431119 None:intergenic 30.0%
! TTGCATTTTCATAAACTGTC+AGG + chr1_1:24431140-24431159 Msa0015090:intron 30.0%
TTTCATAAACTGTCAGGAAT+TGG + chr1_1:24431146-24431165 Msa0015090:intron 30.0%
! CTAGCAGCATATTTTATAAC+AGG - chr1_1:24431318-24431337 None:intergenic 30.0%
! TAGTGTTTTCCTCCTTTATT+TGG + chr1_1:24431335-24431354 Msa0015090:intron 30.0%
! CTTTTCGACTTCATAGATAT+TGG + chr1_1:24431401-24431420 Msa0015090:CDS 30.0%
!! TTGTTTCTGTTGGTTATTGT+TGG + chr1_1:24431538-24431557 Msa0015090:intron 30.0%
! TGTTTCTGTTGGTTATTGTT+GGG + chr1_1:24431539-24431558 Msa0015090:intron 30.0%
AAACAAAGCTTCTTGCTTAT+TGG - chr1_1:24431639-24431658 None:intergenic 30.0%
!!! TAAGCAAGAAGCTTTGTTTT+TGG + chr1_1:24431640-24431659 Msa0015090:CDS 30.0%
!!! CTTCTAGCTTTTTTTCACAA+GGG - chr1_1:24431678-24431697 None:intergenic 30.0%
!!! TCTTCTAGCTTTTTTTCACA+AGG - chr1_1:24431679-24431698 None:intergenic 30.0%
!! AAGAACGTTGCATTTTAATC+TGG + chr1_1:24431750-24431769 Msa0015090:three_prime_UTR 30.0%
ACTTATCATGGAAATATTCG+TGG + chr1_1:24431831-24431850 Msa0015090:three_prime_UTR 30.0%
! TATGATCCTTGCTGTCAATT+TGG + chr1_1:24428303-24428322 Msa0015090:intron 35.0%
! ATGATCCTTGCTGTCAATTT+GGG + chr1_1:24428304-24428323 Msa0015090:intron 35.0%
!! TCTTGTTGACTTAAAGCTAG+AGG + chr1_1:24428328-24428347 Msa0015090:intron 35.0%
GTAGTTATCTCGGATGATTT+AGG + chr1_1:24428491-24428510 Msa0015090:intron 35.0%
AACTAATGGCATGTTTGGAT+TGG - chr1_1:24428668-24428687 None:intergenic 35.0%
TTAGCGTTAGATCTTACTCT+TGG + chr1_1:24428717-24428736 Msa0015090:intron 35.0%
TAGAAGCAAACTAGCATAAG+AGG - chr1_1:24428777-24428796 None:intergenic 35.0%
GTTAATGCATATTTCAGCGA+AGG + chr1_1:24428948-24428967 Msa0015090:CDS 35.0%
AGAAATGTACCTTGTCACTA+TGG + chr1_1:24429031-24429050 Msa0015090:intron 35.0%
AATGTAACACCATAGTGACA+AGG - chr1_1:24429043-24429062 None:intergenic 35.0%
ATATCCATGAAATCTCCTTG+GGG - chr1_1:24429152-24429171 None:intergenic 35.0%
CTATATCCATGAAATCTCCT+TGG - chr1_1:24429154-24429173 None:intergenic 35.0%
GCAAAAGATAAAAGAGATGG+AGG - chr1_1:24429203-24429222 None:intergenic 35.0%
AGTATACTTCTCCCAATTGT+AGG - chr1_1:24429257-24429276 None:intergenic 35.0%
CCAGTAACATCTTCAACTAT+TGG - chr1_1:24429398-24429417 None:intergenic 35.0%
CCAATAGTTGAAGATGTTAC+TGG + chr1_1:24429395-24429414 Msa0015090:CDS 35.0%
TCTGGTAAATTCTCCAATGT+GGG - chr1_1:24429545-24429564 None:intergenic 35.0%
ATCTGGTAAATTCTCCAATG+TGG - chr1_1:24429546-24429565 None:intergenic 35.0%
CATATAAAATTAGAGGAGCC+CGG - chr1_1:24429697-24429716 None:intergenic 35.0%
! AACTTAAAGGTGTACCTTCA+AGG - chr1_1:24429828-24429847 None:intergenic 35.0%
TTTCATGTCAGAAGCAATTC+AGG - chr1_1:24429964-24429983 None:intergenic 35.0%
!! TTAGGGGAAGTATCTTCAAA+TGG + chr1_1:24430080-24430099 Msa0015090:CDS 35.0%
TGGTACTGTGGTAGTAAATA+TGG + chr1_1:24430212-24430231 Msa0015090:intron 35.0%
ATATGGTCATTGTAGATTGC+AGG + chr1_1:24430229-24430248 Msa0015090:CDS 35.0%
TGAAGAAGATGAAGATGTAG+AGG + chr1_1:24430274-24430293 Msa0015090:CDS 35.0%
AGGACTATACTTCATCAGAT+GGG - chr1_1:24430448-24430467 None:intergenic 35.0%
AAGGACTATACTTCATCAGA+TGG - chr1_1:24430449-24430468 None:intergenic 35.0%
TTTCAATATTTACAGTGGGG+TGG + chr1_1:24430545-24430564 Msa0015090:intron 35.0%
ACATGAGTTCATGCAGAATA+GGG + chr1_1:24430664-24430683 Msa0015090:CDS 35.0%
! AAGTTACAGGTTTTACGAGA+TGG + chr1_1:24430815-24430834 Msa0015090:intron 35.0%
TTTACGAGATGGTCTAATTG+TGG + chr1_1:24430826-24430845 Msa0015090:intron 35.0%
AAAAGAATTGAAGGCCATTG+CGG + chr1_1:24430916-24430935 Msa0015090:CDS 35.0%
AGAATCTCAAAGAAAGTTGC+AGG + chr1_1:24430979-24430998 Msa0015090:CDS 35.0%
GCTTATGAGATCTTAGGAAT+CGG - chr1_1:24431281-24431300 None:intergenic 35.0%
TTATAACAGGCATCTTTACC+TGG - chr1_1:24431305-24431324 None:intergenic 35.0%
ATGTATGCACCAAATAAAGG+AGG - chr1_1:24431347-24431366 None:intergenic 35.0%
AGCATGTATGCACCAAATAA+AGG - chr1_1:24431350-24431369 None:intergenic 35.0%
CTTCATAGATATTGGTAGAC+AGG + chr1_1:24431409-24431428 Msa0015090:CDS 35.0%
AGAATGATAGGCAGAAAGTT+GGG - chr1_1:24431467-24431486 None:intergenic 35.0%
AAGAATGATAGGCAGAAAGT+TGG - chr1_1:24431468-24431487 None:intergenic 35.0%
! GTTTCTGTTGGTTATTGTTG+GGG + chr1_1:24431540-24431559 Msa0015090:intron 35.0%
! TGCAACGTTCTTTTGTGTAT+TGG - chr1_1:24431742-24431761 None:intergenic 35.0%
GATTGCGATTTCGATTTCCA+TGG + chr1_1:24427832-24427851 Msa0015090:exon 40.0%
GTGTCAATCGTCTCTTGATT+AGG - chr1_1:24427863-24427882 None:intergenic 40.0%
TGCAATTGGTTGAGAAACAC+CGG - chr1_1:24427900-24427919 None:intergenic 40.0%
! TGAAGCTTTTGCAGTGCAAT+TGG - chr1_1:24427914-24427933 None:intergenic 40.0%
AATTGCACTGCAAAAGCTTC+AGG + chr1_1:24427913-24427932 Msa0015090:CDS 40.0%
AAGATCCCAAATTGACAGCA+AGG - chr1_1:24428312-24428331 None:intergenic 40.0%
! GTTCTCTTTAATGGTGTTGG+AGG + chr1_1:24428850-24428869 Msa0015090:intron 40.0%
!!! TTTTTTTCATGGCAGGAGCA+TGG + chr1_1:24428906-24428925 Msa0015090:intron 40.0%
CGAAGGAGACAGAAATTTGA+TGG + chr1_1:24428965-24428984 Msa0015090:CDS 40.0%
! TGCATGAAAAAAGGCATACC+TGG - chr1_1:24428991-24429010 None:intergenic 40.0%
TCTCTTGGATGAGTGACAAA+CGG - chr1_1:24429311-24429330 None:intergenic 40.0%
GCAAATTCCGATAGAGGATA+AGG + chr1_1:24429337-24429356 Msa0015090:CDS 40.0%
ATTCCGATAGAGGATAAGGA+TGG + chr1_1:24429341-24429360 Msa0015090:CDS 40.0%
CTACCATCCTTATCCTCTAT+CGG - chr1_1:24429347-24429366 None:intergenic 40.0%
ATGACACTCCCATGTATATC+TGG - chr1_1:24429440-24429459 None:intergenic 40.0%
CTGTCAGGTGAAGAATTAGT+CGG - chr1_1:24429503-24429522 None:intergenic 40.0%
TCTATGTCATTGCTGCTATC+TGG - chr1_1:24429563-24429582 None:intergenic 40.0%
AAAAGTGATTGCCTTGGGTT+AGG - chr1_1:24429770-24429789 None:intergenic 40.0%
! CCTCTAAAAGTGATTGCCTT+GGG - chr1_1:24429775-24429794 None:intergenic 40.0%
! TCCTCTAAAAGTGATTGCCT+TGG - chr1_1:24429776-24429795 None:intergenic 40.0%
TGCAGTTTCATTGTCCTTGA+AGG + chr1_1:24429811-24429830 Msa0015090:CDS 40.0%
! CTGTTCTGGTTGTAAAACAC+TGG - chr1_1:24429892-24429911 None:intergenic 40.0%
TAAAGTCAAAGTTACGGCAC+CGG - chr1_1:24429916-24429935 None:intergenic 40.0%
TCAACTCCTTGTGTCTTAGA+TGG - chr1_1:24430059-24430078 None:intergenic 40.0%
! AAGACACAAGGAGTTGACTT+AGG + chr1_1:24430062-24430081 Msa0015090:CDS 40.0%
! AGACACAAGGAGTTGACTTA+GGG + chr1_1:24430063-24430082 Msa0015090:CDS 40.0%
!! GGGAAGTATCTTCAAATGGA+AGG + chr1_1:24430084-24430103 Msa0015090:CDS 40.0%
AAGGAATTGTCATTATGCGG+AGG - chr1_1:24430425-24430444 None:intergenic 40.0%
GGGAAGGAATTGTCATTATG+CGG - chr1_1:24430428-24430447 None:intergenic 40.0%
CTATACTTCATCAGATGGGA+AGG - chr1_1:24430444-24430463 None:intergenic 40.0%
TGATGAAGCAGTAATGCTTG+AGG + chr1_1:24430586-24430605 Msa0015090:CDS 40.0%
CTATTCTGCATGAACTCATG+TGG - chr1_1:24430665-24430684 None:intergenic 40.0%
CACATGAGTTCATGCAGAAT+AGG + chr1_1:24430663-24430682 Msa0015090:CDS 40.0%
CATGAGTTCATGCAGAATAG+GGG + chr1_1:24430665-24430684 Msa0015090:CDS 40.0%
TGTCTGCTTCTAATGATGCA+AGG - chr1_1:24430892-24430911 None:intergenic 40.0%
AGAGTAAGCAACACCGAAAT+GGG - chr1_1:24431121-24431140 None:intergenic 40.0%
AAGAGTAAGCAACACCGAAA+TGG - chr1_1:24431122-24431141 None:intergenic 40.0%
CTGATGGTAAAAATGCCAGA+TGG + chr1_1:24431240-24431259 Msa0015090:CDS 40.0%
! GCGTGTGCTTTTACTTATCA+TGG + chr1_1:24431819-24431838 Msa0015090:three_prime_UTR 40.0%
! ATTCGTGGATGCTTTGTTGT+AGG + chr1_1:24431846-24431865 Msa0015090:three_prime_UTR 40.0%
ATTATTTGCAGGGGAAGAGA+TGG - chr1_1:24431934-24431953 None:intergenic 40.0%
CTTCTAAACTCTACGGCGTA+CGG + chr1_1:24427704-24427723 Msa0015090:five_prime_UTR 45.0%
GACACATTCATCAGCATCAC+CGG + chr1_1:24427878-24427897 Msa0015090:CDS 45.0%
! GAGACAGAAATTTGATGGCC+AGG + chr1_1:24428970-24428989 Msa0015090:CDS 45.0%
CATGAAATCTCCTTGGGGAA+CGG - chr1_1:24429147-24429166 None:intergenic 45.0%
! TCATCTTGGTGCAACAAACC+AGG + chr1_1:24429283-24429302 Msa0015090:CDS 45.0%
GTTTGTCACTCATCCAAGAG+AGG + chr1_1:24429310-24429329 Msa0015090:CDS 45.0%
TCACTCATCCAAGAGAGGTA+AGG + chr1_1:24429315-24429334 Msa0015090:CDS 45.0%
GGAATTTGCCTTACCTCTCT+TGG - chr1_1:24429326-24429345 None:intergenic 45.0%
GGTAAGGCAAATTCCGATAG+AGG + chr1_1:24429331-24429350 Msa0015090:CDS 45.0%
AGTCAATCAACTCCTCAAGC+TGG + chr1_1:24429365-24429384 Msa0015090:CDS 45.0%
ATTGGAATATGGCCAGCTTG+AGG - chr1_1:24429380-24429399 None:intergenic 45.0%
CCCATGTATATCTGGACCTT+GGG - chr1_1:24429432-24429451 None:intergenic 45.0%
CCCAAGGTCCAGATATACAT+GGG + chr1_1:24429429-24429448 Msa0015090:CDS 45.0%
TCCCATGTATATCTGGACCT+TGG - chr1_1:24429433-24429452 None:intergenic 45.0%
AATGATTCGTGCAGCCATTG+AGG + chr1_1:24429589-24429608 Msa0015090:CDS 45.0%
TTGTATTTCCCACATGGTGC+AGG + chr1_1:24429727-24429746 Msa0015090:intron 45.0%
!! CCCAAGGCAATCACTTTTAG+AGG + chr1_1:24429772-24429791 Msa0015090:CDS 45.0%
! GTTTTACAACCAGAACAGCC+CGG + chr1_1:24429894-24429913 Msa0015090:intron 45.0%
AAAGTCAAAGTTACGGCACC+GGG - chr1_1:24429915-24429934 None:intergenic 45.0%
! CTTTTTCTTGCTCTGCTGTC+TGG - chr1_1:24429992-24430011 None:intergenic 45.0%
CAGCAGAGCAAGAAAAAGCA+CGG + chr1_1:24429994-24430013 Msa0015090:CDS 45.0%
! GACACAAGGAGTTGACTTAG+GGG + chr1_1:24430064-24430083 Msa0015090:CDS 45.0%
AGATGTAGAGGAGATGCCTT+TGG + chr1_1:24430286-24430305 Msa0015090:CDS 45.0%
TAGAGGAGATGCCTTTGGTT+AGG + chr1_1:24430291-24430310 Msa0015090:CDS 45.0%
AGATGCCTTTGGTTAGGAAC+AGG + chr1_1:24430297-24430316 Msa0015090:CDS 45.0%
GTAGACCTGTTCCTAACCAA+AGG - chr1_1:24430305-24430324 None:intergenic 45.0%
!! ATGTGTCACTTAGCTCCACA+GGG + chr1_1:24430330-24430349 Msa0015090:CDS 45.0%
ATTAATCGAGTCCAGCACAC+TGG + chr1_1:24430370-24430389 Msa0015090:CDS 45.0%
ATGCTTGAGGCTGCAATGTT+CGG + chr1_1:24430599-24430618 Msa0015090:CDS 45.0%
ACTCATGTGGTGCATAAGCA+CGG - chr1_1:24430652-24430671 None:intergenic 45.0%
AAGAAAGTTGCAGGAAGAGC+AGG + chr1_1:24430988-24431007 Msa0015090:CDS 45.0%
TGGTGGTAGAGAGACTTCTT+TGG - chr1_1:24431187-24431206 None:intergenic 45.0%
TCATCATCAGAGGATGGTTC+TGG - chr1_1:24431207-24431226 None:intergenic 45.0%
TGACAGTGCTGTGAATCTGA+TGG + chr1_1:24431224-24431243 Msa0015090:CDS 45.0%
CCTGGAGCTTATGAGATCTT+AGG - chr1_1:24431287-24431306 None:intergenic 45.0%
CCTAAGATCTCATAAGCTCC+AGG + chr1_1:24431284-24431303 Msa0015090:CDS 45.0%
CAAACCAAGCAGTTACAGAC+TGG + chr1_1:24431433-24431452 Msa0015090:CDS 45.0%
AGCACTTTCCTCAACACCAA+AGG - chr1_1:24431591-24431610 None:intergenic 45.0%
!! TGAGGAAAGTGCTGTGACAT+TGG + chr1_1:24431598-24431617 Msa0015090:CDS 45.0%
! CTCTTGATTAGGTGTCGCCA+TGG - chr1_1:24427852-24427871 None:intergenic 50.0%
! CGGATGATTTAGGGCCTGTT+TGG + chr1_1:24428501-24428520 Msa0015090:intron 50.0%
!! TTTTCATGGCAGGAGCATGG+TGG + chr1_1:24428909-24428928 Msa0015090:intron 50.0%
CGTTCCCCAAGGAGATTTCA+TGG + chr1_1:24429145-24429164 Msa0015090:CDS 50.0%
ACTGGAACTGTTCATGCCCA+AGG + chr1_1:24429413-24429432 Msa0015090:CDS 50.0%
GCCCAAGGTCCAGATATACA+TGG + chr1_1:24429428-24429447 Msa0015090:CDS 50.0%
GGTGAAGAATTAGTCGGAGC+AGG - chr1_1:24429497-24429516 None:intergenic 50.0%
!! TTCTCCAATGTGGGAGCACT+AGG - chr1_1:24429536-24429555 None:intergenic 50.0%
! ATTTTCCTCAGCCTCTCGTC+TGG - chr1_1:24429618-24429637 None:intergenic 50.0%
TGCAGGACGTGAGTGAATCT+GGG + chr1_1:24429744-24429763 Msa0015090:intron 50.0%
AAAGCACGGCGTGTACAAGA+AGG + chr1_1:24430008-24430027 Msa0015090:CDS 50.0%
CGTGTACAAGAAGGTGATGC+TGG + chr1_1:24430017-24430036 Msa0015090:CDS 50.0%
GAATTCATTGCAGCAGCCAC+AGG - chr1_1:24430140-24430159 None:intergenic 50.0%
GGTCATTGTAGATTGCAGGC+AGG + chr1_1:24430233-24430252 Msa0015090:CDS 50.0%
!! CATGTGTCACTTAGCTCCAC+AGG + chr1_1:24430329-24430348 Msa0015090:CDS 50.0%
! TGCAATGTTCGGTGGAATCC+CGG + chr1_1:24430610-24430629 Msa0015090:CDS 50.0%
AGGGTGATATGCAAGAGGTG+CGG - chr1_1:24430705-24430724 None:intergenic 50.0%
GAAGGAGGGTGATATGCAAG+AGG - chr1_1:24430710-24430729 None:intergenic 50.0%
TCACCCTCCTTCACCATCAT+TGG + chr1_1:24430718-24430737 Msa0015090:CDS 50.0%
! CCTCCAATGATGGTGAAGGA+GGG - chr1_1:24430724-24430743 None:intergenic 50.0%
! TGAGCCTCCAATGATGGTGA+AGG - chr1_1:24430728-24430747 None:intergenic 50.0%
GCGCTTGATAAGGGAACAAC+AGG + chr1_1:24430748-24430767 Msa0015090:CDS 50.0%
!! TCATCAGAGGATGGTTCTGG+TGG - chr1_1:24431204-24431223 None:intergenic 50.0%
GCACTGTCATCATCAGAGGA+TGG - chr1_1:24431213-24431232 None:intergenic 50.0%
CACAGCACTGTCATCATCAG+AGG - chr1_1:24431217-24431236 None:intergenic 50.0%
CTCACCAGTCTGTAACTGCT+TGG - chr1_1:24431440-24431459 None:intergenic 50.0%
! CTGTTGGTTATTGTTGGGGC+AGG + chr1_1:24431544-24431563 Msa0015090:intron 50.0%
GGCAGGTAAGACCATATCCT+AGG + chr1_1:24431561-24431580 Msa0015090:intron 50.0%
GCTGTGACATTGGACGAACT+TGG + chr1_1:24431608-24431627 Msa0015090:CDS 50.0%
GAAATCTCCTTGGGGAACGG+CGG - chr1_1:24429144-24429163 None:intergenic 55.0%
CTAGGTCTCGCACTACTGTC+AGG - chr1_1:24429518-24429537 None:intergenic 55.0%
GAGACCTAGTGCTCCCACAT+TGG + chr1_1:24429529-24429548 Msa0015090:CDS 55.0%
CTCTCGTCTGGATGCCTCAA+TGG - chr1_1:24429606-24429625 None:intergenic 55.0%
! CATTGAGGCATCCAGACGAG+AGG + chr1_1:24429604-24429623 Msa0015090:CDS 55.0%
ACTCACGTCCTGCACCATGT+GGG - chr1_1:24429738-24429757 None:intergenic 55.0%
GTGCAGGACGTGAGTGAATC+TGG + chr1_1:24429743-24429762 Msa0015090:intron 55.0%
GTGAATCTGGGCCTAACCCA+AGG + chr1_1:24429756-24429775 Msa0015090:CDS 55.0%
GAAACTGCACGAGCAAGCTC+AGG - chr1_1:24429800-24429819 None:intergenic 55.0%
! AGGTGATGCTGGAGCACCTA+CGG + chr1_1:24430028-24430047 Msa0015090:CDS 55.0%
! GCAGGGCCATCTAAGACACA+AGG + chr1_1:24430050-24430069 Msa0015090:CDS 55.0%
TCCTGCATGTTGTCCACCTG+TGG + chr1_1:24430121-24430140 Msa0015090:intron 55.0%
TTCATTGCAGCAGCCACAGG+TGG - chr1_1:24430137-24430156 None:intergenic 55.0%
TCACTTAGCTCCACAGGGTC+AGG + chr1_1:24430335-24430354 Msa0015090:CDS 55.0%
AGCATCTTTGCCTGACCCTG+TGG - chr1_1:24430348-24430367 None:intergenic 55.0%
ACTGGCAGGCACAACAGTTC+CGG + chr1_1:24430388-24430407 Msa0015090:CDS 55.0%
CTTGAGGCTGCAATGTTCGG+TGG + chr1_1:24430602-24430621 Msa0015090:CDS 55.0%
! ATGTTCGGTGGAATCCCGGA+AGG + chr1_1:24430614-24430633 Msa0015090:CDS 55.0%
GGCGATAACCACTTCCTTCC+GGG - chr1_1:24430631-24430650 None:intergenic 55.0%
CGGCGATAACCACTTCCTTC+CGG - chr1_1:24430632-24430651 None:intergenic 55.0%
! GGGTGATATGCAAGAGGTGC+GGG - chr1_1:24430704-24430723 None:intergenic 55.0%
CCCTCCTTCACCATCATTGG+AGG + chr1_1:24430721-24430740 Msa0015090:CDS 55.0%
! GCCTCCAATGATGGTGAAGG+AGG - chr1_1:24430725-24430744 None:intergenic 55.0%
!! AAGCGCTGAGCCTCCAATGA+TGG - chr1_1:24430734-24430753 None:intergenic 55.0%
TGGAGGCTCAGCGCTTGATA+AGG + chr1_1:24430738-24430757 Msa0015090:CDS 55.0%
GGAGGCTCAGCGCTTGATAA+GGG + chr1_1:24430739-24430758 Msa0015090:CDS 55.0%
AGCAACCTCAGCTTCCGCAA+TGG - chr1_1:24430933-24430952 None:intergenic 55.0%
! CCAAAGGCACGCCTAGGATA+TGG - chr1_1:24431575-24431594 None:intergenic 55.0%
CCATATCCTAGGCGTGCCTT+TGG + chr1_1:24431572-24431591 Msa0015090:CDS 55.0%
! TCAACACCAAAGGCACGCCT+AGG - chr1_1:24431581-24431600 None:intergenic 55.0%
!! TAGGCGTGCCTTTGGTGTTG+AGG + chr1_1:24431580-24431599 Msa0015090:CDS 55.0%
GCAGAGCTGTCATGAGAGGC+CGG - chr1_1:24429122-24429141 None:intergenic 60.0%
GATGAGTGACAAACGGCGCC+TGG - chr1_1:24429304-24429323 None:intergenic 60.0%
CACTCACGTCCTGCACCATG+TGG - chr1_1:24429739-24429758 None:intergenic 60.0%
! ATGCTGGAGCACCTACGGCA+GGG + chr1_1:24430033-24430052 Msa0015090:CDS 60.0%
GTCTTAGATGGCCCTGCCGT+AGG - chr1_1:24430047-24430066 None:intergenic 60.0%
GCCACAGGTGGACAACATGC+AGG - chr1_1:24430125-24430144 None:intergenic 60.0%
ATCGAGTCCAGCACACTGGC+AGG + chr1_1:24430374-24430393 Msa0015090:CDS 60.0%
TGTTGTGCCTGCCAGTGTGC+TGG - chr1_1:24430384-24430403 None:intergenic 60.0%
!! TGCGGAGGACTGCTGCTTTC+CGG - chr1_1:24430410-24430429 None:intergenic 60.0%
GTGGGGTGGCATGTCTTCAG+TGG + chr1_1:24430559-24430578 Msa0015090:intron 60.0%
GGTGGAATCCCGGAAGGAAG+TGG + chr1_1:24430620-24430639 Msa0015090:CDS 60.0%
! TATGCAAGAGGTGCGGGCTG+AGG - chr1_1:24430698-24430717 None:intergenic 60.0%
GAAGGCCATTGCGGAAGCTG+AGG + chr1_1:24430925-24430944 Msa0015090:CDS 60.0%
AGCTGAGGTTGCTCGCGAAG+AGG + chr1_1:24430940-24430959 Msa0015090:CDS 60.0%
TTAGGAATCGGCGCCCACGA+CGG - chr1_1:24431269-24431288 None:intergenic 60.0%
GGCGGCAGAGCTGTCATGAG+AGG - chr1_1:24429126-24429145 None:intergenic 65.0%
GGCATCCAGACGAGAGGCTG+AGG + chr1_1:24429610-24429629 Msa0015090:CDS 65.0%
! GTTACGGCACCGGGCTGTTC+TGG - chr1_1:24429906-24429925 None:intergenic 65.0%
! GATGCTGGAGCACCTACGGC+AGG + chr1_1:24430032-24430051 Msa0015090:CDS 65.0%
! CAAGAGGTGCGGGCTGAGGA+TGG - chr1_1:24430694-24430713 None:intergenic 65.0%
ATGCCAGATGGCAGCCGTCG+TGG + chr1_1:24431252-24431271 Msa0015090:CDS 65.0%
TGCCAGATGGCAGCCGTCGT+GGG + chr1_1:24431253-24431272 Msa0015090:CDS 65.0%
AGCTCTGCCGCCGTTCCCCA+AGG + chr1_1:24429134-24429153 Msa0015090:intron 70.0%
CGCCCACGACGGCTGCCATC+TGG - chr1_1:24431258-24431277 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 24427653 24431969 24427653 ID=Msa0015090;Name=Msa0015090
chr1_1 mRNA 24427653 24431969 24427653 ID=Msa0015090-mRNA-1;Parent=Msa0015090;Name=Msa0015090-mRNA-1;_AED=0.12;_eAED=0.12;_QI=198|0.9|0.90|1|1|1|11|296|588
chr1_1 exon 24427653 24427934 24427653 ID=Msa0015090-mRNA-1:exon:8365;Parent=Msa0015090-mRNA-1
chr1_1 exon 24428921 24428991 24428921 ID=Msa0015090-mRNA-1:exon:8366;Parent=Msa0015090-mRNA-1
chr1_1 exon 24429136 24429667 24429136 ID=Msa0015090-mRNA-1:exon:8367;Parent=Msa0015090-mRNA-1
chr1_1 exon 24429749 24429832 24429749 ID=Msa0015090-mRNA-1:exon:8368;Parent=Msa0015090-mRNA-1
chr1_1 exon 24429993 24430105 24429993 ID=Msa0015090-mRNA-1:exon:8369;Parent=Msa0015090-mRNA-1
chr1_1 exon 24430226 24430457 24430226 ID=Msa0015090-mRNA-1:exon:8370;Parent=Msa0015090-mRNA-1
chr1_1 exon 24430560 24430769 24430560 ID=Msa0015090-mRNA-1:exon:8371;Parent=Msa0015090-mRNA-1
chr1_1 exon 24430878 24431009 24430878 ID=Msa0015090-mRNA-1:exon:8372;Parent=Msa0015090-mRNA-1
chr1_1 exon 24431162 24431305 24431162 ID=Msa0015090-mRNA-1:exon:8373;Parent=Msa0015090-mRNA-1
chr1_1 exon 24431398 24431454 24431398 ID=Msa0015090-mRNA-1:exon:8374;Parent=Msa0015090-mRNA-1
chr1_1 exon 24431566 24431969 24431566 ID=Msa0015090-mRNA-1:exon:8375;Parent=Msa0015090-mRNA-1
chr1_1 five_prime_UTR 24427653 24427850 24427653 ID=Msa0015090-mRNA-1:five_prime_utr;Parent=Msa0015090-mRNA-1
chr1_1 CDS 24427851 24427934 24427851 ID=Msa0015090-mRNA-1:cds;Parent=Msa0015090-mRNA-1
chr1_1 CDS 24428921 24428991 24428921 ID=Msa0015090-mRNA-1:cds;Parent=Msa0015090-mRNA-1
chr1_1 CDS 24429136 24429667 24429136 ID=Msa0015090-mRNA-1:cds;Parent=Msa0015090-mRNA-1
chr1_1 CDS 24429749 24429832 24429749 ID=Msa0015090-mRNA-1:cds;Parent=Msa0015090-mRNA-1
chr1_1 CDS 24429993 24430105 24429993 ID=Msa0015090-mRNA-1:cds;Parent=Msa0015090-mRNA-1
chr1_1 CDS 24430226 24430457 24430226 ID=Msa0015090-mRNA-1:cds;Parent=Msa0015090-mRNA-1
chr1_1 CDS 24430560 24430769 24430560 ID=Msa0015090-mRNA-1:cds;Parent=Msa0015090-mRNA-1
chr1_1 CDS 24430878 24431009 24430878 ID=Msa0015090-mRNA-1:cds;Parent=Msa0015090-mRNA-1
chr1_1 CDS 24431162 24431305 24431162 ID=Msa0015090-mRNA-1:cds;Parent=Msa0015090-mRNA-1
chr1_1 CDS 24431398 24431454 24431398 ID=Msa0015090-mRNA-1:cds;Parent=Msa0015090-mRNA-1
chr1_1 CDS 24431566 24431673 24431566 ID=Msa0015090-mRNA-1:cds;Parent=Msa0015090-mRNA-1
chr1_1 three_prime_UTR 24431674 24431969 24431674 ID=Msa0015090-mRNA-1:three_prime_utr;Parent=Msa0015090-mRNA-1
Gene Sequence

>Msa0015090

ATGGCGACACCTAATCAAGAGACGATTGACACATTCATCAGCATCACCGGTGTTTCTCAACCAATTGCACTGCAAAAGCTTCAGGAGCATGGTGGTAGTCTTAATGAAGCTGTTAATGCATATTTCAGCGAAGGAGACAGAAATTTGATGGCCAGCTCTGCCGCCGTTCCCCAAGGAGATTTCATGGATATAGATGATCAACATGATGAAATTCTTAGACCTCCATCTCTTTTATCTTTTGCAAGAAATCTCGATCCATTTTCTCTTATTGATCCTACAATTGGGAGAAGTATACTTGATACTCATCTTGGTGCAACAAACCAGGCGCCGTTTGTCACTCATCCAAGAGAGGTAAGGCAAATTCCGATAGAGGATAAGGATGGTAGTCAATCAACTCCTCAAGCTGGCCATATTCCAATAGTTGAAGATGTTACTGGAACTGTTCATGCCCAAGGTCCAGATATACATGGGAGTGTCATAGTACTTGATGATGATGATGATGACAATACTCTGCCTGCTCCGACTAATTCTTCACCTGACAGTAGTGCGAGACCTAGTGCTCCCACATTGGAGAATTTACCAGATAGCAGCAATGACATAGAAGAAGAAATGATTCGTGCAGCCATTGAGGCATCCAGACGAGAGGCTGAGGAAAATTACAGCAATCATGAAGTTGACAGACAAATTGACGTGAGTGAATCTGGGCCTAACCCAAGGCAATCACTTTTAGAGGATCCTGAGCTTGCTCGTGCAGTTTCATTGTCCTTGAAGACAGCAGAGCAAGAAAAAGCACGGCGTGTACAAGAAGGTGATGCTGGAGCACCTACGGCAGGGCCATCTAAGACACAAGGAGTTGACTTAGGGGAAGTATCTTCAAATGGAAGTAAATATGGTCATTGTAGATTGCAGGCAGGAGAAGATGAAGATGAAGATGAAGAAGATGAAGATGTAGAGGAGATGCCTTTGGTTAGGAACAGGTCTACTAGACATGTGTCACTTAGCTCCACAGGGTCAGGCAAAGATGCTGAATTAATCGAGTCCAGCACACTGGCAGGCACAACAGTTCCGGAAAGCAGCAGTCCTCCGCATAATGACAATTCCTTCCCATCTGATGAATGGGGTGGCATGTCTTCAGTGGAACATGATGAAGCAGTAATGCTTGAGGCTGCAATGTTCGGTGGAATCCCGGAAGGAAGTGGTTATCGCCGTGCTTATGCACCACATGAGTTCATGCAGAATAGGGGTTTCCATCCTCAGCCCGCACCTCTTGCATATCACCCTCCTTCACCATCATTGGAGGCTCAGCGCTTGATAAGGGAACAACAGGATGATGAATACCTTGCATCATTAGAAGCAGACAGAGAAAAAGAATTGAAGGCCATTGCGGAAGCTGAGGTTGCTCGCGAAGAGGAAAAACAGAGAGCAGAAGAATCTCAAAGAAAGTTGCAGGAAGAGCAGGAATTGGAAGCACAGTTAGCTGCCAAAGAAGTCTCTCTACCACCAGAACCATCCTCTGATGATGACAGTGCTGTGAATCTGATGGTAAAAATGCCAGATGGCAGCCGTCGTGGGCGCCGATTCCTAAGATCTCATAAGCTCCAGTCTCTTTTCGACTTCATAGATATTGGTAGACAGGTCAAACCAAGCAGTTACAGACTGGTAAGACCATATCCTAGGCGTGCCTTTGGTGTTGAGGAAAGTGCTGTGACATTGGACGAACTTGGCTTAACCAATAAGCAAGAAGCTTTGTTTTTGGAGTTAGTCTGA
Protein sequence

>Msa0015090

MATPNQETIDTFISITGVSQPIALQKLQEHGGSLNEAVNAYFSEGDRNLMASSAAVPQGDFMDIDDQHDEILRPPSLLSFARNLDPFSLIDPTIGRSILDTHLGATNQAPFVTHPREVRQIPIEDKDGSQSTPQAGHIPIVEDVTGTVHAQGPDIHGSVIVLDDDDDDNTLPAPTNSSPDSSARPSAPTLENLPDSSNDIEEEMIRAAIEASRREAEENYSNHEVDRQIDVSESGPNPRQSLLEDPELARAVSLSLKTAEQEKARRVQEGDAGAPTAGPSKTQGVDLGEVSSNGSKYGHCRLQAGEDEDEDEEDEDVEEMPLVRNRSTRHVSLSSTGSGKDAELIESSTLAGTTVPESSSPPHNDNSFPSDEWGGMSSVEHDEAVMLEAAMFGGIPEGSGYRRAYAPHEFMQNRGFHPQPAPLAYHPPSPSLEAQRLIREQQDDEYLASLEADREKELKAIAEAEVAREEEKQRAEESQRKLQEEQELEAQLAAKEVSLPPEPSSDDDSAVNLMVKMPDGSRRGRRFLRSHKLQSLFDFIDIGRQVKPSSYRLVRPYPRRAFGVEESAVTLDELGLTNKQEALFLELV*