Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0487310 | XP_039687645.1 | 93.082 | 983 | 51 | 5 | 1 | 967 | 507 | 1488 | 0.0 | 1850 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0487310 | sp|F4KFS5|GMI1_ARATH | 32.683 | 820 | 476 | 17 | 180 | 938 | 786 | 1590 | 1.62e-115 | 392 |
Msa0487310 | sp|F4KFS5|GMI1_ARATH | 48.826 | 213 | 107 | 2 | 1 | 212 | 520 | 731 | 1.66e-57 | 220 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0487310 | G7I3H5 | 92.879 | 983 | 52 | 6 | 1 | 967 | 29 | 1009 | 0.0 | 1845 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0008080 | Msa0487310 | 0.897484 | 1.344704e-76 | -8.615850e-47 |
Msa0008140 | Msa0487310 | 0.896742 | 2.755277e-76 | -8.615850e-47 |
Msa0015090 | Msa0487310 | 0.807644 | 4.570836e-50 | -8.615850e-47 |
Msa0049750 | Msa0487310 | 0.817694 | 2.887358e-52 | -8.615850e-47 |
Msa0103030 | Msa0487310 | 0.942881 | 3.269553e-102 | -8.615850e-47 |
Msa0149250 | Msa0487310 | 0.810701 | 1.011389e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0487310 | MtrunA17_Chr1g0147011 | 71.037 | 984 | 247 | 17 | 1 | 967 | 500 | 1462 | 0.0 | 1353 |
Msa0487310 | MtrunA17_Chr1g0146991 | 91.414 | 594 | 35 | 4 | 389 | 967 | 1 | 593 | 0.0 | 1083 |
Msa0487310 | MtrunA17_Chr1g0146971 | 95.775 | 142 | 5 | 1 | 1 | 142 | 5 | 145 | 4.34e-90 | 283 |
Msa0487310 | MtrunA17_Chr1g0146981 | 89.583 | 144 | 15 | 0 | 246 | 389 | 2 | 145 | 3.73e-85 | 270 |
Msa0487310 | MtrunA17_Chr7g0275811 | 39.597 | 298 | 159 | 7 | 620 | 897 | 43 | 339 | 6.31e-60 | 209 |
Msa0487310 | MtrunA17_Chr3g0126881 | 34.447 | 389 | 204 | 10 | 612 | 958 | 49 | 428 | 1.07e-56 | 202 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0487310 | AT5G24280.2 | 32.683 | 820 | 476 | 17 | 180 | 938 | 754 | 1558 | 8.69e-117 | 392 |
Msa0487310 | AT5G24280.2 | 48.826 | 213 | 107 | 2 | 1 | 212 | 488 | 699 | 1.59e-58 | 220 |
Msa0487310 | AT5G24280.3 | 32.683 | 820 | 476 | 17 | 180 | 938 | 754 | 1558 | 8.69e-117 | 392 |
Msa0487310 | AT5G24280.3 | 48.826 | 213 | 107 | 2 | 1 | 212 | 488 | 699 | 1.59e-58 | 220 |
Msa0487310 | AT5G24280.1 | 32.683 | 820 | 476 | 17 | 180 | 938 | 786 | 1590 | 1.65e-116 | 392 |
Msa0487310 | AT5G24280.1 | 48.826 | 213 | 107 | 2 | 1 | 212 | 520 | 731 | 1.68e-58 | 220 |
Msa0487310 | AT5G24275.2 | 34.644 | 534 | 284 | 14 | 342 | 840 | 99 | 602 | 2.50e-82 | 278 |
Msa0487310 | AT5G24275.1 | 34.644 | 534 | 284 | 14 | 342 | 840 | 304 | 807 | 8.34e-81 | 280 |
Msa0487310 | AT5G24275.3 | 34.286 | 455 | 234 | 14 | 421 | 840 | 6 | 430 | 6.90e-67 | 231 |
Msa0487310 | AT5G24275.4 | 34.286 | 455 | 234 | 14 | 421 | 840 | 6 | 430 | 6.90e-67 | 231 |
Msa0487310 | AT3G49250.1 | 37.943 | 282 | 155 | 5 | 613 | 875 | 59 | 339 | 5.41e-50 | 183 |
Find 172 sgRNAs with CRISPR-Local
Find 454 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAAACTCCTGCCTGAATTT+TGG | 0.154170 | 3_4:+6066406 | None:intergenic |
CAAAAGGTCCCCTCAATTTC+TGG | 0.157458 | 3_4:+6066039 | None:intergenic |
CACTTCTTGGAAGATATAAT+TGG | 0.178304 | 3_4:-6064734 | Msa0487310:CDS |
GAGAACGCCAGAAGGCTTTA+TGG | 0.220992 | 3_4:-6063868 | Msa0487310:CDS |
TAGCTGTTGATAATATTAAA+TGG | 0.268635 | 3_4:-6069924 | Msa0487310:CDS |
GAACTCTTTCTCTTGGCTTT+GGG | 0.273909 | 3_4:-6063644 | Msa0487310:intron |
TTCTTCAAAGCAATGGTAAA+AGG | 0.274323 | 3_4:+6071504 | None:intergenic |
TCGGTGTCGATCACGCTTAT+AGG | 0.275828 | 3_4:+6070031 | None:intergenic |
CGTGGAGGTTAATATTCTTT+TGG | 0.285939 | 3_4:-6067024 | Msa0487310:CDS |
GTGTTAAGGGGAGCATGTTC+AGG | 0.289144 | 3_4:-6070818 | Msa0487310:CDS |
GGAACTCTTTCTCTTGGCTT+TGG | 0.301870 | 3_4:-6063645 | Msa0487310:CDS |
GGGTGTTATTTGTAGATCTT+TGG | 0.303791 | 3_4:-6064268 | Msa0487310:CDS |
TTCAACATTTGCGTAGCTTC+TGG | 0.316994 | 3_4:+6062982 | None:intergenic |
GGCGGCATTATAAGAGAAAA+TGG | 0.319270 | 3_4:-6063666 | Msa0487310:CDS |
AGTTGGTCTTCTCTTATATT+AGG | 0.324131 | 3_4:+6068154 | None:intergenic |
CAACGTGCTTTCGTTTATAC+TGG | 0.328799 | 3_4:+6069839 | None:intergenic |
CTAAAGTTAACAGCAGGTTT+TGG | 0.328837 | 3_4:-6066750 | Msa0487310:CDS |
TCATATGCTTACAATTAAAT+CGG | 0.329243 | 3_4:-6066136 | Msa0487310:CDS |
TTCTCCTCTGGGATATCTAT+TGG | 0.340662 | 3_4:+6070121 | None:intergenic |
TTACTACTGAAGATTGAAAA+AGG | 0.344652 | 3_4:-6062937 | Msa0487310:CDS |
CCGATCCAAAGTTATCAAAT+AGG | 0.350635 | 3_4:-6063890 | Msa0487310:CDS |
TACCATTGCTTTGAAGAACT+TGG | 0.366945 | 3_4:-6071499 | Msa0487310:CDS |
AAGCAATGGTAAAAGGATTC+TGG | 0.367642 | 3_4:+6071511 | None:intergenic |
AAAGCAACAGAATCACTTCT+TGG | 0.370458 | 3_4:-6064747 | Msa0487310:CDS |
AAGAGAAGACCAACTACTTC+CGG | 0.372390 | 3_4:-6068146 | Msa0487310:CDS |
GGTGGATTGACAACTATAAC+TGG | 0.373256 | 3_4:+6071225 | None:intergenic |
CGTTTATACTGGTTTGTGCC+TGG | 0.377283 | 3_4:+6069850 | None:intergenic |
ACTTCTTGGAAGATATAATT+GGG | 0.379257 | 3_4:-6064733 | Msa0487310:CDS |
AGAACGCCAGAAGGCTTTAT+GGG | 0.383529 | 3_4:-6063867 | Msa0487310:intron |
GATCTACAGGTAGATGATAA+AGG | 0.383791 | 3_4:-6066795 | Msa0487310:intron |
GAAAATGGAACTCTTTCTCT+TGG | 0.387527 | 3_4:-6063651 | Msa0487310:CDS |
ATGCCAAGTGCTTCCTTGTT+CGG | 0.389709 | 3_4:+6071204 | None:intergenic |
GCATTTCTAATATCCATTCA+TGG | 0.392415 | 3_4:+6071289 | None:intergenic |
TGCTAGACTTAGGAGATTGA+TGG | 0.394563 | 3_4:-6062774 | None:intergenic |
TAAGAGTTGATAGTTCCTTC+AGG | 0.395269 | 3_4:+6065825 | None:intergenic |
TTTGACGACATTTGCCAACT+TGG | 0.396807 | 3_4:-6065332 | Msa0487310:CDS |
AGCATAGGTGTCCCAATCTC+TGG | 0.399969 | 3_4:+6062793 | None:intergenic |
ACCTTCGAACATAACAGATA+TGG | 0.401978 | 3_4:+6066432 | None:intergenic |
ATTTCTGGAACACGAATAGA+TGG | 0.403991 | 3_4:+6066054 | None:intergenic |
TAATTGTAAGCATATGAAAC+TGG | 0.404903 | 3_4:+6066142 | None:intergenic |
TCGAAGGTAAACCAAAATTC+AGG | 0.410501 | 3_4:-6066417 | Msa0487310:CDS |
TGAAGAGAAAGGAGAAGTCT+TGG | 0.412538 | 3_4:-6070862 | Msa0487310:CDS |
TTCAGAATCCTGAGCTTAGC+AGG | 0.415233 | 3_4:-6064688 | Msa0487310:intron |
GCATAACCCATAAAGCCTTC+TGG | 0.415293 | 3_4:+6063861 | None:intergenic |
TGACGTGACTGTTGAACTTC+AGG | 0.416376 | 3_4:-6068574 | Msa0487310:CDS |
ATTGGGGTCGTTGCCCTCCT+TGG | 0.419077 | 3_4:-6064716 | Msa0487310:CDS |
CTATTTGATAACTTTGGATC+GGG | 0.419959 | 3_4:+6063891 | None:intergenic |
AGAGCGCACCCATTCTCCTC+TGG | 0.422918 | 3_4:+6070109 | None:intergenic |
TGTAGTCATTTCTTCTTTGG+TGG | 0.431659 | 3_4:+6064829 | None:intergenic |
TTGGAACAAAATCCAGAGAT+TGG | 0.433347 | 3_4:-6062805 | Msa0487310:CDS |
AATGATTACAAGTAGTGAAT+TGG | 0.434890 | 3_4:-6068389 | Msa0487310:CDS |
GCTGCTGAAGCAGCTAATCT+TGG | 0.436687 | 3_4:-6064180 | Msa0487310:CDS |
AATGGTGCTGTATCATTAGA+TGG | 0.437239 | 3_4:-6063687 | Msa0487310:CDS |
TTTCAAGGAGTTAGCGTTTG+AGG | 0.438649 | 3_4:-6068116 | Msa0487310:intron |
TGTTCCAATGCCTCAGCAAA+AGG | 0.439517 | 3_4:+6062820 | None:intergenic |
AATCAAAGTAGTTCTATAGC+TGG | 0.442718 | 3_4:+6068354 | None:intergenic |
TGAAGTCATTAGAGTTCATC+GGG | 0.443438 | 3_4:-6070888 | Msa0487310:intron |
ACAAGGACAGCATCGGGCCA+TGG | 0.446135 | 3_4:-6063801 | Msa0487310:CDS |
CATATGCTTACAATTAAATC+GGG | 0.450609 | 3_4:-6066135 | Msa0487310:CDS |
GTTCTCCTATTTGATAACTT+TGG | 0.452254 | 3_4:+6063885 | None:intergenic |
AAACATGGAGCTTCTTGAAA+AGG | 0.455518 | 3_4:+6063754 | None:intergenic |
AGAGAAGACCAACTACTTCC+GGG | 0.458345 | 3_4:-6068145 | Msa0487310:CDS |
TTGTGCCACTGGTGGTCAGC+TGG | 0.468884 | 3_4:-6066238 | Msa0487310:CDS |
AGTCATTTCTTCTTTGGTGG+TGG | 0.469132 | 3_4:+6064832 | None:intergenic |
TAGAACAAGAATACCATGAA+TGG | 0.469842 | 3_4:-6071302 | Msa0487310:CDS |
CTGTCCTTGTCTCTAGGTGA+TGG | 0.479142 | 3_4:+6063814 | None:intergenic |
TATTCGTGTTCCAGAAATTG+AGG | 0.479757 | 3_4:-6066049 | Msa0487310:CDS |
ACCATTGCTTTGAAGAACTT+GGG | 0.479885 | 3_4:-6071498 | Msa0487310:CDS |
ATACCTTGCCATCGCTATTG+AGG | 0.480638 | 3_4:+6065774 | None:intergenic |
GCACTTGGCATTTCTGAAGA+TGG | 0.483183 | 3_4:-6071192 | Msa0487310:intron |
AGTTCAACAGTCACGTCATC+CGG | 0.483607 | 3_4:+6068579 | None:intergenic |
CAAAGAGCTACTGATATTCA+AGG | 0.484754 | 3_4:+6070060 | None:intergenic |
TAGATATCCCAGAGGAGAAT+GGG | 0.487516 | 3_4:-6070117 | Msa0487310:CDS |
CAAGGACAGCATCGGGCCAT+GGG | 0.488337 | 3_4:-6063800 | Msa0487310:CDS |
CCTGCTTCCATTGACTCGCC+AGG | 0.488418 | 3_4:-6069868 | Msa0487310:CDS |
ATGAGAAGCTTCAAAGCAAA+AGG | 0.489261 | 3_4:+6066023 | None:intergenic |
TTTGAAATTGTCAATGCTGA+TGG | 0.489566 | 3_4:-6066204 | Msa0487310:CDS |
CCTATTTGATAACTTTGGAT+CGG | 0.489733 | 3_4:+6063890 | None:intergenic |
TCATTTGACAGGCCATATGA+TGG | 0.491198 | 3_4:-6063951 | Msa0487310:intron |
GTGAAGTCATTAGAGTTCAT+CGG | 0.496698 | 3_4:-6070889 | Msa0487310:intron |
CCGATGCTGTCCTTGTCTCT+AGG | 0.498998 | 3_4:+6063808 | None:intergenic |
TGGAACAAAATCCAGAGATT+GGG | 0.504538 | 3_4:-6062804 | Msa0487310:CDS |
GTTTGTGCCTGGCGAGTCAA+TGG | 0.504962 | 3_4:+6069861 | None:intergenic |
CCAAGTGCTTCCTTGTTCGG+TGG | 0.505892 | 3_4:+6071207 | None:intergenic |
AAGCGTGATCGACACCGAAA+AGG | 0.506735 | 3_4:-6070026 | Msa0487310:intron |
TGTTAAGGGGAGCATGTTCA+GGG | 0.508251 | 3_4:-6070817 | Msa0487310:CDS |
AAGAGTTGATAGTTCCTTCA+GGG | 0.511517 | 3_4:+6065826 | None:intergenic |
AAGGAGAAGTCTTGGAGTCA+TGG | 0.515142 | 3_4:-6070854 | Msa0487310:CDS |
AGAATGTTAGCGGAATATCT+TGG | 0.519099 | 3_4:-6064306 | Msa0487310:CDS |
TTGTGCAACATCTTTCGCAT+TGG | 0.520629 | 3_4:+6065877 | None:intergenic |
CAAAACAAGCAAGAGTATGA+TGG | 0.521624 | 3_4:-6063730 | Msa0487310:CDS |
GACTTGTATTTCAAAGTGCA+TGG | 0.525063 | 3_4:-6068543 | Msa0487310:CDS |
TGAAACGTATTCATTGTGCT+TGG | 0.527904 | 3_4:-6068879 | Msa0487310:CDS |
AATGTCAAGAGCTTGATGTC+AGG | 0.535452 | 3_4:-6068831 | Msa0487310:intron |
ATCAAAGTAGTTCTATAGCT+GGG | 0.536927 | 3_4:+6068355 | None:intergenic |
ATAGATATCCCAGAGGAGAA+TGG | 0.537558 | 3_4:-6070118 | Msa0487310:CDS |
GTCATAACATGCAATGGCTA+AGG | 0.538290 | 3_4:+6068635 | None:intergenic |
GGGACACCTATGCTAGACTT+AGG | 0.539982 | 3_4:-6062784 | Msa0487310:CDS |
AAATGAAACCCGGAAGTAGT+TGG | 0.542686 | 3_4:+6068137 | None:intergenic |
GAGCGCACCCATTCTCCTCT+GGG | 0.543360 | 3_4:+6070110 | None:intergenic |
ATTCGTGTTCCAGAAATTGA+GGG | 0.543848 | 3_4:-6066048 | Msa0487310:CDS |
TCGATTCATCTGCATTAGAA+AGG | 0.544560 | 3_4:+6066112 | None:intergenic |
CACGGAAAAGATACTGAAAA+CGG | 0.545180 | 3_4:+6068313 | None:intergenic |
TCCATATCTGTTATGTTCGA+AGG | 0.546516 | 3_4:-6066433 | Msa0487310:CDS |
GAGAAGCTCGGATCATATGC+AGG | 0.547744 | 3_4:-6070239 | Msa0487310:intron |
AGCTACTGATATTCAAGGTG+GGG | 0.548390 | 3_4:+6070065 | None:intergenic |
CTAGAGACAAGGACAGCATC+GGG | 0.549880 | 3_4:-6063807 | Msa0487310:CDS |
TCTTGGTGAAGATCAAATGC+TGG | 0.550642 | 3_4:-6064289 | Msa0487310:CDS |
CCTGGCGAGTCAATGGAAGC+AGG | 0.552118 | 3_4:+6069868 | None:intergenic |
TAAACGGAGCTCGATTGTCA+TGG | 0.556220 | 3_4:+6068610 | None:intergenic |
CATTTGACAGGCCATATGAT+GGG | 0.556751 | 3_4:-6063950 | Msa0487310:intron |
GCCCAAGTTCTTCAAAGCAA+TGG | 0.557865 | 3_4:+6071497 | None:intergenic |
TAACATGCAATGGCTAAGGA+TGG | 0.558634 | 3_4:+6068639 | None:intergenic |
GAGCTACTGATATTCAAGGT+GGG | 0.560334 | 3_4:+6070064 | None:intergenic |
CCTCCACGCCTTCAGACACA+TGG | 0.567717 | 3_4:+6067039 | None:intergenic |
CCTAGAGACAAGGACAGCAT+CGG | 0.567982 | 3_4:-6063808 | Msa0487310:CDS |
TGTCCTTGTCTCTAGGTGAT+GGG | 0.568195 | 3_4:+6063815 | None:intergenic |
TATTCTTGTTCTATTTGTGA+AGG | 0.568352 | 3_4:+6071312 | None:intergenic |
AAACCATGTGTCTGAAGGCG+TGG | 0.569571 | 3_4:-6067042 | Msa0487310:CDS |
CCACCGAACAAGGAAGCACT+TGG | 0.570708 | 3_4:-6071207 | Msa0487310:CDS |
GTAGTGAATTGGACAAGATA+AGG | 0.573215 | 3_4:-6068378 | Msa0487310:CDS |
TGCAATGGCTAAGGATGGAA+AGG | 0.573670 | 3_4:+6068644 | None:intergenic |
CTTGAAAAGGCTAAATAGAA+CGG | 0.573892 | 3_4:+6063767 | None:intergenic |
CAAGAGCTGTTGATGCTGCA+AGG | 0.576166 | 3_4:-6065245 | Msa0487310:intron |
AGTTGTCAATCCACCGAACA+AGG | 0.578580 | 3_4:-6071217 | Msa0487310:CDS |
ATCTCTGTCCTCAATAGCGA+TGG | 0.578829 | 3_4:-6065782 | Msa0487310:CDS |
TCATCGGGTTCTGAAGAGAA+AGG | 0.580117 | 3_4:-6070873 | Msa0487310:CDS |
TGTTGATAATATTAAATGGA+AGG | 0.581075 | 3_4:-6069920 | Msa0487310:CDS |
TTGACAAACCTGCTAAGCTC+AGG | 0.581495 | 3_4:+6064680 | None:intergenic |
AACATTTGCGTAGCTTCTGG+AGG | 0.585146 | 3_4:+6062985 | None:intergenic |
GGTCAACTAAAGTTAACAGC+AGG | 0.589570 | 3_4:-6066756 | Msa0487310:CDS |
GCTATTGAATGTATAGAGAA+TGG | 0.595546 | 3_4:-6063705 | Msa0487310:CDS |
CCACAAGGAAAATATATGCA+AGG | 0.599117 | 3_4:+6063024 | None:intergenic |
AGGTAAACCAAAATTCAGGC+AGG | 0.600747 | 3_4:-6066413 | Msa0487310:CDS |
TAATTGCAGTACTGTATACA+AGG | 0.601251 | 3_4:-6066982 | Msa0487310:intron |
TGACATCAAGCTCTTGACAT+TGG | 0.603498 | 3_4:+6068833 | None:intergenic |
CTAATGCAGATGAATCGATA+CGG | 0.604094 | 3_4:-6066107 | Msa0487310:CDS |
CAATCTCCTAAGTCTAGCAT+AGG | 0.607643 | 3_4:+6062778 | None:intergenic |
TATAGAAACCATGTGTCTGA+AGG | 0.607775 | 3_4:-6067047 | Msa0487310:CDS |
AAAATTTCAGATAAACAGAC+CGG | 0.608599 | 3_4:-6071471 | Msa0487310:intron |
TTAGCATATTCGAGATAACC+AGG | 0.610969 | 3_4:+6068184 | None:intergenic |
TATGATGACGAAGCTGATGC+CGG | 0.618739 | 3_4:-6071258 | Msa0487310:CDS |
TGTCCTCAATAGCGATGGCA+AGG | 0.619932 | 3_4:-6065777 | Msa0487310:intron |
TGTTGCACAACATCTATCCC+CGG | 0.620409 | 3_4:-6065864 | Msa0487310:CDS |
ATTCTGAACAGAACCAAGGA+GGG | 0.629386 | 3_4:+6064703 | None:intergenic |
AACTCCTTGAAAATGAAACC+CGG | 0.629390 | 3_4:+6068127 | None:intergenic |
GAACGGTCTCACGAAGCCCA+TGG | 0.630143 | 3_4:+6063784 | None:intergenic |
ATATCCATCTTGCTCCCACA+AGG | 0.630443 | 3_4:+6063009 | None:intergenic |
AATCTTGCGAATCGCATCTG+AGG | 0.630729 | 3_4:-6066371 | Msa0487310:intron |
TCAAATAGGAGAACGCCAGA+AGG | 0.635926 | 3_4:-6063876 | Msa0487310:CDS |
TGTTTCCGTCAAAATTAGCA+CGG | 0.639859 | 3_4:-6071352 | Msa0487310:CDS |
AGAGCTGTGTCTGACTGCAA+AGG | 0.640595 | 3_4:-6065989 | Msa0487310:intron |
CAATCAAAATCACCTCGACA+CGG | 0.641182 | 3_4:+6068295 | None:intergenic |
TATAACTGGCTTATCCTCAC+CGG | 0.643304 | 3_4:+6071239 | None:intergenic |
TTCGTGTTCCAGAAATTGAG+GGG | 0.644094 | 3_4:-6066047 | Msa0487310:CDS |
CCATGTGTCTGAAGGCGTGG+AGG | 0.644668 | 3_4:-6067039 | Msa0487310:CDS |
ATGGATGTCATAACATGCAA+TGG | 0.648753 | 3_4:+6068629 | None:intergenic |
AGAGTTGATAGTTCCTTCAG+GGG | 0.649868 | 3_4:+6065827 | None:intergenic |
AGAGCTACTGATATTCAAGG+TGG | 0.651618 | 3_4:+6070063 | None:intergenic |
CTTGGTGAAGATCAAATGCT+GGG | 0.652340 | 3_4:-6064288 | Msa0487310:CDS |
GAGTTGATAGTTCCTTCAGG+GGG | 0.653915 | 3_4:+6065828 | None:intergenic |
CTTCTTGGAAGATATAATTG+GGG | 0.656471 | 3_4:-6064732 | Msa0487310:CDS |
GGTGGTGGCAAACAACAAGT+CGG | 0.673922 | 3_4:+6064847 | None:intergenic |
GATTCTGAACAGAACCAAGG+AGG | 0.680382 | 3_4:+6064702 | None:intergenic |
CAGGATTCTGAACAGAACCA+AGG | 0.684171 | 3_4:+6064699 | None:intergenic |
ATTCCCATCACCTAGAGACA+AGG | 0.688226 | 3_4:-6063818 | Msa0487310:CDS |
ATTCAGGAATCTTACCACCC+AGG | 0.699327 | 3_4:+6070732 | None:intergenic |
TGACGAAGCTGATGCCGGTG+AGG | 0.712253 | 3_4:-6071253 | Msa0487310:CDS |
GGGGAAAGTATTCTTATCCG+GGG | 0.712971 | 3_4:+6065847 | None:intergenic |
CACGTGCAGAGAGACTACAT+AGG | 0.722422 | 3_4:+6064771 | None:intergenic |
GGTGCTGTATCATTAGATGG+CGG | 0.731976 | 3_4:-6063684 | Msa0487310:CDS |
CAGGCCAATAGATATCCCAG+AGG | 0.793787 | 3_4:-6070125 | Msa0487310:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGTATATTAATTATTTACAT+GGG | + | chr3_4:6064905-6064924 | None:intergenic | 10.0% |
!! | ATGTATATTAATTATTTACA+TGG | + | chr3_4:6064906-6064925 | None:intergenic | 10.0% |
!!! | TAAAATGACTTTAAAAATTA+TGG | - | chr3_4:6065806-6065825 | Msa0487310:CDS | 10.0% |
!! | CAAATAAATCTTAAAATATT+TGG | + | chr3_4:6066500-6066519 | None:intergenic | 10.0% |
!!! | ATATTTTAAGATTTATTTGT+TGG | - | chr3_4:6066501-6066520 | Msa0487310:intron | 10.0% |
!!! | TATTTTAAGATTTATTTGTT+GGG | - | chr3_4:6066502-6066521 | Msa0487310:intron | 10.0% |
!! | AAATAGTAATAAAAAAGAAA+AGG | - | chr3_4:6066817-6066836 | Msa0487310:intron | 10.0% |
!! | ATCAAATTTAAATTTATAAC+AGG | + | chr3_4:6066962-6066981 | None:intergenic | 10.0% |
!! | AAATTCATGATATAAATTTA+AGG | - | chr3_4:6068627-6068646 | Msa0487310:CDS | 10.0% |
!! | TCATATTATAATCAAAATTA+CGG | + | chr3_4:6070225-6070244 | None:intergenic | 10.0% |
!!! | TTTTATAGATTTTTTTTTTG+AGG | - | chr3_4:6070260-6070279 | Msa0487310:intron | 10.0% |
!! | TTTGTATTTGTATTATATAT+AGG | - | chr3_4:6071210-6071229 | Msa0487310:CDS | 10.0% |
!! | TAAACTTATGAATGTATTAA+AGG | + | chr3_4:6063263-6063282 | None:intergenic | 15.0% |
!!! | ACAAAAAATAAAAGTGTTAA+GGG | - | chr3_4:6063471-6063490 | Msa0487310:intron | 15.0% |
!! | ATTATAAAAAGAAAGAGAAA+AGG | + | chr3_4:6063619-6063638 | None:intergenic | 15.0% |
!! | TTTATATTCTATTTCATTCT+AGG | + | chr3_4:6063644-6063663 | None:intergenic | 15.0% |
!! | TAGAATGAAATAGAATATAA+AGG | - | chr3_4:6063643-6063662 | Msa0487310:intron | 15.0% |
!! | TAATATTGAATGATATGAAA+TGG | + | chr3_4:6063776-6063795 | None:intergenic | 15.0% |
!! | TATTAATAAGTGAAAAAAAG+TGG | - | chr3_4:6063835-6063854 | Msa0487310:CDS | 15.0% |
!!! | ATAAGAAAAAAGAGTAATTT+TGG | - | chr3_4:6063891-6063910 | Msa0487310:CDS | 15.0% |
!!! | TGTTGTATATTTGTTTTATA+CGG | - | chr3_4:6064307-6064326 | Msa0487310:CDS | 15.0% |
!! | ATCAAATCATAACAAATATT+TGG | + | chr3_4:6064587-6064606 | None:intergenic | 15.0% |
!!! | AATATTTGTTATGATTTGAT+TGG | - | chr3_4:6064587-6064606 | Msa0487310:intron | 15.0% |
!!! | AAATAACTATTGTATTGTTT+TGG | - | chr3_4:6065871-6065890 | Msa0487310:CDS | 15.0% |
!!! | ATTTCATCAAACATTTTATT+TGG | + | chr3_4:6066396-6066415 | None:intergenic | 15.0% |
!! | TTCTTAAAAAAATTGATGTT+TGG | + | chr3_4:6066867-6066886 | None:intergenic | 15.0% |
!! | ACAAAGAATTAAAAAAACAT+AGG | + | chr3_4:6067072-6067091 | None:intergenic | 15.0% |
!!! | TGTTTTTTTAATTCTTTGTA+TGG | - | chr3_4:6067073-6067092 | Msa0487310:intron | 15.0% |
!! | ATATGTCAAATAGAAATATT+GGG | + | chr3_4:6067200-6067219 | None:intergenic | 15.0% |
!! | AATATGTCAAATAGAAATAT+TGG | + | chr3_4:6067201-6067220 | None:intergenic | 15.0% |
!! | CATTATTTAAATTTACTTCA+TGG | - | chr3_4:6067782-6067801 | Msa0487310:intron | 15.0% |
!! | TAAAAAAATTAATGAGCAAA+TGG | - | chr3_4:6069023-6069042 | Msa0487310:intron | 15.0% |
!! | CTTGAAAAATATAAACAAAA+TGG | - | chr3_4:6070071-6070090 | Msa0487310:CDS | 15.0% |
!!! | ACTAATACAATAGTTTTTTA+TGG | - | chr3_4:6071029-6071048 | Msa0487310:intron | 15.0% |
!!! | TAGTTTTTTATGGTTATTTT+CGG | - | chr3_4:6071039-6071058 | Msa0487310:intron | 15.0% |
!! | GATTTATAATCAGAAAATAC+CGG | + | chr3_4:6062853-6062872 | None:intergenic | 20.0% |
!!! | TATTTATGATTGTTGCTTTT+TGG | - | chr3_4:6063166-6063185 | Msa0487310:intron | 20.0% |
!! | ACATTCATAAGTTTATGATA+TGG | - | chr3_4:6063268-6063287 | Msa0487310:intron | 20.0% |
!! | AGAAAAATAGAATGAGAAAA+AGG | + | chr3_4:6063386-6063405 | None:intergenic | 20.0% |
!!! | GACAAAAAATAAAAGTGTTA+AGG | - | chr3_4:6063470-6063489 | Msa0487310:intron | 20.0% |
!!! | CAAAAAATAAAAGTGTTAAG+GGG | - | chr3_4:6063472-6063491 | Msa0487310:intron | 20.0% |
!!! | ACTAACTTCTCTTTTATTTA+TGG | + | chr3_4:6063816-6063835 | None:intergenic | 20.0% |
!! | AAAAAAAAAAACACTGAAAG+TGG | + | chr3_4:6064028-6064047 | None:intergenic | 20.0% |
!!! | AGGATTTATATGATTTTAGT+AGG | + | chr3_4:6064118-6064137 | None:intergenic | 20.0% |
!!! | ACAACAAAATTTAACCTTTT+CGG | + | chr3_4:6064293-6064312 | None:intergenic | 20.0% |
!!! | TAGCTGTTGATAATATTAAA+TGG | - | chr3_4:6064378-6064397 | Msa0487310:intron | 20.0% |
!!! | TGTTGATAATATTAAATGGA+AGG | - | chr3_4:6064382-6064401 | Msa0487310:intron | 20.0% |
!! | AATCATAACAAATATTTGGT+TGG | + | chr3_4:6064583-6064602 | None:intergenic | 20.0% |
!! | AGAATTCAACTCATATTTAA+AGG | + | chr3_4:6064661-6064680 | None:intergenic | 20.0% |
!! | ACCAATTTGTCTTATAAAAA+GGG | - | chr3_4:6064802-6064821 | Msa0487310:CDS | 20.0% |
!! | CTCAAAACAATAATTTACAA+AGG | + | chr3_4:6065319-6065338 | None:intergenic | 20.0% |
!!! | TTGTAAATTATTGTTTTGAG+TGG | - | chr3_4:6065319-6065338 | Msa0487310:CDS | 20.0% |
!! | AACAAAACAAAACTATTGAA+TGG | - | chr3_4:6066586-6066605 | Msa0487310:intron | 20.0% |
!!! | AAAAAATTCTGAAGTTATGT+AGG | - | chr3_4:6066885-6066904 | Msa0487310:intron | 20.0% |
!! | TAGATTCAAAATTCCATAAA+TGG | + | chr3_4:6066915-6066934 | None:intergenic | 20.0% |
!! | CATGAATACATAATGATTAA+AGG | + | chr3_4:6067016-6067035 | None:intergenic | 20.0% |
!!! | GAATTTTCATTTAACATATG+AGG | + | chr3_4:6067486-6067505 | None:intergenic | 20.0% |
!!! | TTTGAAGTTAAAGAGAATAA+TGG | + | chr3_4:6067700-6067719 | None:intergenic | 20.0% |
!! | TTTAAATAATGAACTAGTCA+TGG | + | chr3_4:6067773-6067792 | None:intergenic | 20.0% |
!! | TCATATGCTTACAATTAAAT+CGG | - | chr3_4:6068166-6068185 | Msa0487310:CDS | 20.0% |
!! | TGTCAGTTATGAATTATAAT+TGG | - | chr3_4:6068367-6068386 | Msa0487310:CDS | 20.0% |
!! | AACTGTTATTAATTGAAGAT+AGG | - | chr3_4:6069135-6069154 | Msa0487310:intron | 20.0% |
!! | GACTACAAAAATTAAAAACA+TGG | - | chr3_4:6069489-6069508 | Msa0487310:intron | 20.0% |
!!! | TTTTTTTTACAGAATGTTAG+CGG | - | chr3_4:6069986-6070005 | Msa0487310:intron | 20.0% |
!!! | TTTTTTTTGAGGAAAAACTA+TGG | - | chr3_4:6070271-6070290 | Msa0487310:intron | 20.0% |
!!! | TTTTTTTGAGGAAAAACTAT+GGG | - | chr3_4:6070272-6070291 | Msa0487310:intron | 20.0% |
!! | ATTAAAATGTACAAGTTTGA+AGG | - | chr3_4:6070934-6070953 | Msa0487310:intron | 20.0% |
!! | TTAAAATGTACAAGTTTGAA+GGG | - | chr3_4:6070935-6070954 | Msa0487310:intron | 20.0% |
!!! | AGTTTTTTATGGTTATTTTC+GGG | - | chr3_4:6071040-6071059 | Msa0487310:intron | 20.0% |
!! | ATCGAGATATAAAAAACATA+TGG | - | chr3_4:6071445-6071464 | Msa0487310:intron | 20.0% |
! | AAAATTTCAGATAAACAGAC+CGG | - | chr3_4:6062831-6062850 | Msa0487310:CDS | 25.0% |
! | TATTCTTGTTCTATTTGTGA+AGG | + | chr3_4:6062993-6063012 | None:intergenic | 25.0% |
! | AGGTTTATTTATTCCTTTGT+TGG | + | chr3_4:6063233-6063252 | None:intergenic | 25.0% |
! | TCATAAGTTTATGATATGGA+TGG | - | chr3_4:6063272-6063291 | Msa0487310:intron | 25.0% |
!! | ACTTCTTATTTACCTCTAAT+CGG | + | chr3_4:6063688-6063707 | None:intergenic | 25.0% |
! | CATTAGAAAAGAAAGAAAAC+CGG | + | chr3_4:6063864-6063883 | None:intergenic | 25.0% |
!! | ACTATAAATTAAGCTTTGAC+TGG | - | chr3_4:6063991-6064010 | Msa0487310:intron | 25.0% |
! | GTGAATATAGACAACTTTAT+AGG | + | chr3_4:6064138-6064157 | None:intergenic | 25.0% |
!!! | TGTATATTTGTTTTATACGG+TGG | - | chr3_4:6064310-6064329 | Msa0487310:intron | 25.0% |
!! | GATGTGGTAAGTATTTTATT+TGG | - | chr3_4:6064485-6064504 | Msa0487310:intron | 25.0% |
! | GTGTAAAAAGAATTTACACA+TGG | + | chr3_4:6064615-6064634 | None:intergenic | 25.0% |
! | ACAAAAAACAAAAAACTACC+AGG | + | chr3_4:6064721-6064740 | None:intergenic | 25.0% |
! | CACCAATTTGTCTTATAAAA+AGG | - | chr3_4:6064801-6064820 | Msa0487310:CDS | 25.0% |
!! | TCCCTTTTTATAAGACAAAT+TGG | + | chr3_4:6064806-6064825 | None:intergenic | 25.0% |
! | ACTTTCTTCTCTTATAAACA+AGG | - | chr3_4:6064951-6064970 | Msa0487310:intron | 25.0% |
! | CTTTCTTCTCTTATAAACAA+GGG | - | chr3_4:6064952-6064971 | Msa0487310:intron | 25.0% |
!!! | ATGTGACTTATTTTATGTCA+TGG | + | chr3_4:6065091-6065110 | None:intergenic | 25.0% |
!!! | GGTTAATGAAGATTTTTAGA+AGG | + | chr3_4:6065206-6065225 | None:intergenic | 25.0% |
! | AACAAATGATTTACTGTACA+GGG | - | chr3_4:6065626-6065645 | Msa0487310:intron | 25.0% |
!!! | TCATCCGGAATTTTTTTAAA+CGG | + | chr3_4:6065711-6065730 | None:intergenic | 25.0% |
!!! | AAGTCATTTTATCAAATGAG+AGG | + | chr3_4:6065797-6065816 | None:intergenic | 25.0% |
! | AATGATTACAAGTAGTGAAT+TGG | - | chr3_4:6065913-6065932 | Msa0487310:intron | 25.0% |
!!! | ATTTGTGTCATTTATTCATC+AGG | - | chr3_4:6066030-6066049 | Msa0487310:CDS | 25.0% |
! | ACCTAAAAGTAACACTATAT+GGG | - | chr3_4:6066291-6066310 | Msa0487310:intron | 25.0% |
!!! | TCTCATATAGTGTTACTTTT+AGG | + | chr3_4:6066350-6066369 | None:intergenic | 25.0% |
! | TAAAAGTAACACTATATGAG+AGG | - | chr3_4:6066349-6066368 | Msa0487310:intron | 25.0% |
! | AAAAGTAACACTATATGAGA+GGG | - | chr3_4:6066350-6066369 | Msa0487310:intron | 25.0% |
!! | TTAAGATTTATTTGTTGGGT+TGG | - | chr3_4:6066506-6066525 | Msa0487310:intron | 25.0% |
! | CAAAACTATTGAATGGTATA+TGG | - | chr3_4:6066593-6066612 | Msa0487310:intron | 25.0% |
!! | TGAATGGTATATGGATTAAA+TGG | - | chr3_4:6066602-6066621 | Msa0487310:intron | 25.0% |
!! | TGTTCTTTTGAATCAATCAA+CGG | - | chr3_4:6066640-6066659 | Msa0487310:intron | 25.0% |
!!! | AAAGCTTTGTTTCAATTTTC+TGG | - | chr3_4:6066702-6066721 | Msa0487310:intron | 25.0% |
! | TTATGTAGGTATACCATTTA+TGG | - | chr3_4:6066899-6066918 | Msa0487310:intron | 25.0% |
! | TGTATTCATGCAAAACAATT+TGG | - | chr3_4:6067026-6067045 | Msa0487310:CDS | 25.0% |
! | ATGTTAGAAACACAAATATG+TGG | + | chr3_4:6067145-6067164 | None:intergenic | 25.0% |
! | TTCTATATGTATCAAACATC+TGG | + | chr3_4:6067242-6067261 | None:intergenic | 25.0% |
!! | GGATAAATATTTTGCATTGA+TGG | - | chr3_4:6067373-6067392 | Msa0487310:intron | 25.0% |
! | TAACATATGAGGAAAAAACA+GGG | + | chr3_4:6067475-6067494 | None:intergenic | 25.0% |
! | TTAACATATGAGGAAAAAAC+AGG | + | chr3_4:6067476-6067495 | None:intergenic | 25.0% |
! | AAATGAAAATTCTGATCTAC+AGG | - | chr3_4:6067494-6067513 | Msa0487310:intron | 25.0% |
! | GATAAAGGAAAAATTGATCT+TGG | - | chr3_4:6067522-6067541 | Msa0487310:intron | 25.0% |
!! | CTTACAATTTGTTTGATTCA+TGG | - | chr3_4:6067615-6067634 | Msa0487310:intron | 25.0% |
! | AAAATTTAGATCTGTAGCTA+AGG | + | chr3_4:6067661-6067680 | None:intergenic | 25.0% |
! | AGAATAATGGTAAGTAACAT+AGG | + | chr3_4:6067687-6067706 | None:intergenic | 25.0% |
!!! | ATGTAGGTTAAATTTGTTAG+AGG | - | chr3_4:6067733-6067752 | Msa0487310:intron | 25.0% |
!!! | TTAAATTTGTTAGAGGTTGT+GGG | - | chr3_4:6067740-6067759 | Msa0487310:intron | 25.0% |
! | TTGTGCTAAATGAAAATTTC+AGG | - | chr3_4:6067982-6068001 | Msa0487310:intron | 25.0% |
! | TAATTGTAAGCATATGAAAC+TGG | + | chr3_4:6068163-6068182 | None:intergenic | 25.0% |
! | CATATGCTTACAATTAAATC+GGG | - | chr3_4:6068167-6068186 | Msa0487310:CDS | 25.0% |
!! | ATGATAACAACAAACTTGTT+AGG | - | chr3_4:6068681-6068700 | Msa0487310:intron | 25.0% |
! | AGGATGAAATTATTTGTTCA+TGG | - | chr3_4:6068762-6068781 | Msa0487310:intron | 25.0% |
! | TAATTGAAGATAGGACAAAA+AGG | - | chr3_4:6069144-6069163 | Msa0487310:intron | 25.0% |
! | AATTGAAGATAGGACAAAAA+GGG | - | chr3_4:6069145-6069164 | Msa0487310:intron | 25.0% |
!! | CTTTTTGTTCAATCTTCAAT+TGG | + | chr3_4:6069241-6069260 | None:intergenic | 25.0% |
! | TAAGTATAACAATGTGGTAA+CGG | + | chr3_4:6069294-6069313 | None:intergenic | 25.0% |
! | TTACCACATTGTTATACTTA+AGG | - | chr3_4:6069294-6069313 | Msa0487310:intron | 25.0% |
! | ATTCCTTAAGTATAACAATG+TGG | + | chr3_4:6069300-6069319 | None:intergenic | 25.0% |
!!! | AATGATGTGTTTTGTTTGTT+TGG | - | chr3_4:6069317-6069336 | Msa0487310:intron | 25.0% |
!! | TTTGTTTGTTTGGAGTATAA+TGG | - | chr3_4:6069327-6069346 | Msa0487310:intron | 25.0% |
! | CATGTTCAACATTATCAATT+AGG | - | chr3_4:6069427-6069446 | Msa0487310:intron | 25.0% |
!! | TTTTGTAGTCATTTCTTCTT+TGG | + | chr3_4:6069479-6069498 | None:intergenic | 25.0% |
! | ACTTCTTGGAAGATATAATT+GGG | - | chr3_4:6069569-6069588 | Msa0487310:intron | 25.0% |
!!! | TGAAGATTGTTTAGAGTTTT+TGG | + | chr3_4:6069675-6069694 | None:intergenic | 25.0% |
! | ATCTTGCATTTCATTATCAT+TGG | - | chr3_4:6069695-6069714 | Msa0487310:intron | 25.0% |
! | CATTTCATTATCATTGGTAA+AGG | - | chr3_4:6069701-6069720 | Msa0487310:intron | 25.0% |
! | TTGGTAAAGGATAAAATTCT+TGG | - | chr3_4:6069714-6069733 | Msa0487310:intron | 25.0% |
! | CACAATCATCATAATTACAT+TGG | + | chr3_4:6069765-6069784 | None:intergenic | 25.0% |
! | CAATGTAATTATGATGATTG+TGG | - | chr3_4:6069763-6069782 | Msa0487310:intron | 25.0% |
!!! | TTATGGGTTTTGAAGATATA+AGG | - | chr3_4:6070171-6070190 | Msa0487310:intron | 25.0% |
! | TTTGAAGATATAAGGTAATG+TGG | - | chr3_4:6070179-6070198 | Msa0487310:intron | 25.0% |
! | TATAATCAAAATTACGGTCA+TGG | + | chr3_4:6070219-6070238 | None:intergenic | 25.0% |
! | TAAAATGTACAAGTTTGAAG+GGG | - | chr3_4:6070936-6070955 | Msa0487310:intron | 25.0% |
!! | TTTAGAGCATAAAATACAAC+TGG | + | chr3_4:6071008-6071027 | None:intergenic | 25.0% |
! | GTAAAAAGTCAGACATTTAA+AGG | + | chr3_4:6071150-6071169 | None:intergenic | 25.0% |
! | TAGAAAACAGAATAGTTAGA+TGG | + | chr3_4:6071253-6071272 | None:intergenic | 25.0% |
!! | ATCTAACTATTCTGTTTTCT+AGG | - | chr3_4:6071252-6071271 | Msa0487310:CDS | 25.0% |
! | TTACTACTGAAGATTGAAAA+AGG | - | chr3_4:6071365-6071384 | Msa0487310:intron | 25.0% |
TTCTTCAAAGCAATGGTAAA+AGG | + | chr3_4:6062801-6062820 | None:intergenic | 30.0% | |
TAGAACAAGAATACCATGAA+TGG | - | chr3_4:6063000-6063019 | Msa0487310:CDS | 30.0% | |
GCATTTCTAATATCCATTCA+TGG | + | chr3_4:6063016-6063035 | None:intergenic | 30.0% | |
! | AATGTATTAAAGGATTAGCG+AGG | + | chr3_4:6063253-6063272 | None:intergenic | 30.0% |
!! | TTCAAGCAAAAAGTACTCTA+TGG | + | chr3_4:6063536-6063555 | None:intergenic | 30.0% |
!! | ATAGAGTACTTTTTGCTTGA+AGG | - | chr3_4:6063535-6063554 | Msa0487310:intron | 30.0% |
!! | TTTTTGCTTGAAGGTTTTGA+AGG | - | chr3_4:6063544-6063563 | Msa0487310:intron | 30.0% |
! | CTTCTTATTTACCTCTAATC+GGG | + | chr3_4:6063687-6063706 | None:intergenic | 30.0% |
GATTAGAGGTAAATAAGAAG+TGG | - | chr3_4:6063687-6063706 | Msa0487310:CDS | 30.0% | |
AAGTGAAAAAAAGTGGAAAC+CGG | - | chr3_4:6063842-6063861 | Msa0487310:intron | 30.0% | |
!!! | GTAATTTTGGTAATGAGTGA+AGG | - | chr3_4:6063904-6063923 | Msa0487310:CDS | 30.0% |
! | TTTTGTTAATAGGAGAAGCT+CGG | - | chr3_4:6064051-6064070 | Msa0487310:intron | 30.0% |
!! | GTGGTAAGTATTTTATTTGG+AGG | - | chr3_4:6064488-6064507 | Msa0487310:intron | 30.0% |
! | TTTGATGATACTATGTCCTT+GGG | + | chr3_4:6064691-6064710 | None:intergenic | 30.0% |
GTATCATCAAAGTTTATTCC+TGG | - | chr3_4:6064700-6064719 | Msa0487310:CDS | 30.0% | |
! | TGAATTCATGCAATTTTCGA+AGG | + | chr3_4:6065227-6065246 | None:intergenic | 30.0% |
TGCAATGAAATATAGTGCAT+TGG | - | chr3_4:6065344-6065363 | Msa0487310:intron | 30.0% | |
!! | CATTGGTAATTTTATCTGCT+AGG | - | chr3_4:6065361-6065380 | Msa0487310:intron | 30.0% |
TCCTTCACAAAACTATAACA+TGG | - | chr3_4:6065546-6065565 | Msa0487310:intron | 30.0% | |
!!! | TCCATGTTATAGTTTTGTGA+AGG | + | chr3_4:6065550-6065569 | None:intergenic | 30.0% |
CAACAAATGATTTACTGTAC+AGG | - | chr3_4:6065625-6065644 | Msa0487310:intron | 30.0% | |
AGCTCCGTTTAAAAAAATTC+CGG | - | chr3_4:6065704-6065723 | Msa0487310:intron | 30.0% | |
!!! | TGTTTTGGAATGTTTAACAC+AGG | - | chr3_4:6065886-6065905 | Msa0487310:CDS | 30.0% |
! | ATCAAAGTAGTTCTATAGCT+GGG | + | chr3_4:6065950-6065969 | None:intergenic | 30.0% |
! | AATCAAAGTAGTTCTATAGC+TGG | + | chr3_4:6065951-6065970 | None:intergenic | 30.0% |
! | TTTTTGTATTCAGTTTCTCC+TGG | - | chr3_4:6066100-6066119 | Msa0487310:CDS | 30.0% |
!! | AGTTGGTCTTCTCTTATATT+AGG | + | chr3_4:6066151-6066170 | None:intergenic | 30.0% |
!!! | TGTTTTAGTTCATTCACTTG+TGG | - | chr3_4:6066260-6066279 | Msa0487310:intron | 30.0% |
GACCTAAAAGTAACACTATA+TGG | - | chr3_4:6066290-6066309 | Msa0487310:intron | 30.0% | |
!!! | TCCCATATAGTGTTACTTTT+AGG | + | chr3_4:6066295-6066314 | None:intergenic | 30.0% |
TAAAAGTAACACTATATGGG+AGG | - | chr3_4:6066294-6066313 | Msa0487310:intron | 30.0% | |
!! | ATTTATTTGTTGGGTTGGAT+CGG | - | chr3_4:6066511-6066530 | Msa0487310:intron | 30.0% |
! | AAAGCTTTGACCTACAAAAT+CGG | + | chr3_4:6066690-6066709 | None:intergenic | 30.0% |
!! | CTTTGTTTCAATTTTCTGGT+GGG | - | chr3_4:6066706-6066725 | Msa0487310:intron | 30.0% |
! | TGAAAACTAGAACTCTAGAA+GGG | + | chr3_4:6066739-6066758 | None:intergenic | 30.0% |
ATGAAAACTAGAACTCTAGA+AGG | + | chr3_4:6066740-6066759 | None:intergenic | 30.0% | |
TTCTTTGTATGGACAATTAC+AGG | - | chr3_4:6067084-6067103 | Msa0487310:intron | 30.0% | |
! | GAGGTTAATATTCTTTTGGA+AGG | - | chr3_4:6067282-6067301 | Msa0487310:intron | 30.0% |
!! | TTCTTTTGGAAGGATTTGAA+AGG | - | chr3_4:6067292-6067311 | Msa0487310:intron | 30.0% |
TAATTGCAGTACTGTATACA+AGG | - | chr3_4:6067320-6067339 | Msa0487310:intron | 30.0% | |
TCTTACAAACTCTAGTATAC+TGG | - | chr3_4:6067351-6067370 | Msa0487310:intron | 30.0% | |
CTTACAAACTCTAGTATACT+GGG | - | chr3_4:6067352-6067371 | Msa0487310:intron | 30.0% | |
ACTTGGAGAAACATATATGT+AGG | - | chr3_4:6067400-6067419 | Msa0487310:intron | 30.0% | |
CTTGGAGAAACATATATGTA+GGG | - | chr3_4:6067401-6067420 | Msa0487310:intron | 30.0% | |
AAAGGAAAAATTGATCTTGG+TGG | - | chr3_4:6067525-6067544 | Msa0487310:intron | 30.0% | |
AAAATGTTACACAGTGATGT+AGG | - | chr3_4:6067717-6067736 | Msa0487310:intron | 30.0% | |
!! | GTTAAATTTGTTAGAGGTTG+TGG | - | chr3_4:6067739-6067758 | Msa0487310:intron | 30.0% |
CATCTAATCTGTTTGATTCA+TGG | - | chr3_4:6067839-6067858 | Msa0487310:intron | 30.0% | |
! | TTTGAAATTGTCAATGCTGA+TGG | - | chr3_4:6068098-6068117 | Msa0487310:intron | 30.0% |
ATTAAGACAAAGTCAGAATG+AGG | + | chr3_4:6068823-6068842 | None:intergenic | 30.0% | |
! | CATTAATTTTCTGACCAAGT+TGG | + | chr3_4:6068987-6069006 | None:intergenic | 30.0% |
TCCATTCAATGAACAATATC+AGG | + | chr3_4:6069171-6069190 | None:intergenic | 30.0% | |
AAACCACAAAACATGTCATT+GGG | + | chr3_4:6069383-6069402 | None:intergenic | 30.0% | |
CACTTCTTGGAAGATATAAT+TGG | - | chr3_4:6069568-6069587 | Msa0487310:intron | 30.0% | |
CTTCTTGGAAGATATAATTG+GGG | - | chr3_4:6069570-6069589 | Msa0487310:intron | 30.0% | |
!!! | GATTGTTTAGAGTTTTTGGT+CGG | + | chr3_4:6069671-6069690 | None:intergenic | 30.0% |
ATTTGTGGAGGTAACTAATA+TGG | + | chr3_4:6069883-6069902 | None:intergenic | 30.0% | |
GTTAGTAAATGAGTGATACA+GGG | + | chr3_4:6069914-6069933 | None:intergenic | 30.0% | |
TGTTAGTAAATGAGTGATAC+AGG | + | chr3_4:6069915-6069934 | None:intergenic | 30.0% | |
GTAAAACAATGAATCTTCTG+AGG | - | chr3_4:6069935-6069954 | Msa0487310:intron | 30.0% | |
! | AAGCAAACGTTTTCATGTTA+TGG | - | chr3_4:6070154-6070173 | Msa0487310:intron | 30.0% |
! | AGCAAACGTTTTCATGTTAT+GGG | - | chr3_4:6070155-6070174 | Msa0487310:intron | 30.0% |
! | CTATTTGATAACTTTGGATC+GGG | + | chr3_4:6070414-6070433 | None:intergenic | 30.0% |
! | CCTATTTGATAACTTTGGAT+CGG | + | chr3_4:6070415-6070434 | None:intergenic | 30.0% |
! | GTTCTCCTATTTGATAACTT+TGG | + | chr3_4:6070420-6070439 | None:intergenic | 30.0% |
CTTGAAAAGGCTAAATAGAA+CGG | + | chr3_4:6070538-6070557 | None:intergenic | 30.0% | |
!!! | TCTTGCTTGTTTTGTAAACA+TGG | + | chr3_4:6069815-6069834 | None:intergenic | 30.0% |
GCTATTGAATGTATAGAGAA+TGG | - | chr3_4:6070597-6070616 | Msa0487310:intron | 30.0% | |
ATCTAATGAACTCATGTGTT+TGG | - | chr3_4:6070760-6070779 | Msa0487310:CDS | 30.0% | |
TCTAATGAACTCATGTGTTT+GGG | - | chr3_4:6070761-6070780 | Msa0487310:CDS | 30.0% | |
! | GTGTATTAATTCTTTTGCAG+TGG | + | chr3_4:6070869-6070888 | None:intergenic | 30.0% |
TTAATACACACACATTGACA+AGG | - | chr3_4:6070880-6070899 | Msa0487310:CDS | 30.0% | |
! | CTTGCATATATTTTCCTTGT+GGG | - | chr3_4:6071279-6071298 | Msa0487310:CDS | 30.0% |
AAGCAATGGTAAAAGGATTC+TGG | + | chr3_4:6062794-6062813 | None:intergenic | 35.0% | |
!! | TACCATTGCTTTGAAGAACT+TGG | - | chr3_4:6062803-6062822 | Msa0487310:CDS | 35.0% |
!! | ACCATTGCTTTGAAGAACTT+GGG | - | chr3_4:6062804-6062823 | Msa0487310:CDS | 35.0% |
TGTTTCCGTCAAAATTAGCA+CGG | - | chr3_4:6062950-6062969 | Msa0487310:CDS | 35.0% | |
ACACACTTTCATACCAACAA+AGG | - | chr3_4:6063217-6063236 | Msa0487310:intron | 35.0% | |
GTGAAGTCATTAGAGTTCAT+CGG | - | chr3_4:6063413-6063432 | Msa0487310:intron | 35.0% | |
TGAAGTCATTAGAGTTCATC+GGG | - | chr3_4:6063414-6063433 | Msa0487310:intron | 35.0% | |
TTACTTTATGCGCTACATTC+AGG | + | chr3_4:6063589-6063608 | None:intergenic | 35.0% | |
! | TGTGCTTTGCTTGATTTTAC+AGG | - | chr3_4:6064158-6064177 | Msa0487310:CDS | 35.0% |
CAAAGAGCTACTGATATTCA+AGG | + | chr3_4:6064245-6064264 | None:intergenic | 35.0% | |
TGAGTCTAATTTCTATGCAC+TGG | - | chr3_4:6064532-6064551 | Msa0487310:intron | 35.0% | |
! | CTTTGATGATACTATGTCCT+TGG | + | chr3_4:6064692-6064711 | None:intergenic | 35.0% |
! | TGGTAATTTTATCTGCTAGG+TGG | - | chr3_4:6065364-6065383 | Msa0487310:intron | 35.0% |
TGAAACGTATTCATTGTGCT+TGG | - | chr3_4:6065423-6065442 | Msa0487310:intron | 35.0% | |
AATGATTTACTGTACAGGGT+TGG | - | chr3_4:6065630-6065649 | Msa0487310:intron | 35.0% | |
ATGGATGTCATAACATGCAA+TGG | + | chr3_4:6065676-6065695 | None:intergenic | 35.0% | |
GACTTGTATTTCAAAGTGCA+TGG | - | chr3_4:6065759-6065778 | Msa0487310:intron | 35.0% | |
GTAGTGAATTGGACAAGATA+AGG | - | chr3_4:6065924-6065943 | Msa0487310:intron | 35.0% | |
CACGGAAAAGATACTGAAAA+CGG | + | chr3_4:6065992-6066011 | None:intergenic | 35.0% | |
TTAGCATATTCGAGATAACC+AGG | + | chr3_4:6066121-6066140 | None:intergenic | 35.0% | |
AACTCCTTGAAAATGAAACC+CGG | + | chr3_4:6066178-6066197 | None:intergenic | 35.0% | |
GACTGTGTTCATTCACTTAT+GGG | - | chr3_4:6066316-6066335 | Msa0487310:intron | 35.0% | |
GATCCAATCAAATGTGTAGA+TGG | - | chr3_4:6066550-6066569 | Msa0487310:intron | 35.0% | |
TCACCATCTACACATTTGAT+TGG | + | chr3_4:6066556-6066575 | None:intergenic | 35.0% | |
!!! | GCTTTGTTTCAATTTTCTGG+TGG | - | chr3_4:6066705-6066724 | Msa0487310:intron | 35.0% |
! | GAAAACTAGAACTCTAGAAG+GGG | + | chr3_4:6066738-6066757 | None:intergenic | 35.0% |
TCATCACACAAATGTTCACT+TGG | - | chr3_4:6066756-6066775 | Msa0487310:CDS | 35.0% | |
TATAGAAACCATGTGTCTGA+AGG | - | chr3_4:6067255-6067274 | Msa0487310:intron | 35.0% | |
! | CGTGGAGGTTAATATTCTTT+TGG | - | chr3_4:6067278-6067297 | Msa0487310:intron | 35.0% |
! | TTTGCATTGATGGTTGTACT+TGG | - | chr3_4:6067383-6067402 | Msa0487310:intron | 35.0% |
GATCTACAGGTAGATGATAA+AGG | - | chr3_4:6067507-6067526 | Msa0487310:intron | 35.0% | |
! | CTAAAGTTAACAGCAGGTTT+TGG | - | chr3_4:6067552-6067571 | Msa0487310:intron | 35.0% |
TCCATATCTGTTATGTTCGA+AGG | - | chr3_4:6067869-6067888 | Msa0487310:intron | 35.0% | |
ACCTTCGAACATAACAGATA+TGG | + | chr3_4:6067873-6067892 | None:intergenic | 35.0% | |
TCGAAGGTAAACCAAAATTC+AGG | - | chr3_4:6067885-6067904 | Msa0487310:intron | 35.0% | |
GCTGTATTGTGTTCAATTTC+AGG | - | chr3_4:6068031-6068050 | Msa0487310:intron | 35.0% | |
TCGATTCATCTGCATTAGAA+AGG | + | chr3_4:6068193-6068212 | None:intergenic | 35.0% | |
CTAATGCAGATGAATCGATA+CGG | - | chr3_4:6068195-6068214 | Msa0487310:intron | 35.0% | |
! | ATACGGTACACTTTTAAGCA+TGG | - | chr3_4:6068212-6068231 | Msa0487310:intron | 35.0% |
!! | ATTTCTGGAACACGAATAGA+TGG | + | chr3_4:6068251-6068270 | None:intergenic | 35.0% |
TATTCGTGTTCCAGAAATTG+AGG | - | chr3_4:6068253-6068272 | Msa0487310:intron | 35.0% | |
ATGAGAAGCTTCAAAGCAAA+AGG | + | chr3_4:6068282-6068301 | None:intergenic | 35.0% | |
AATTGGTTAGATTTGTCTGC+AGG | - | chr3_4:6068384-6068403 | Msa0487310:CDS | 35.0% | |
!! | AAGAGTTGATAGTTCCTTCA+GGG | + | chr3_4:6068479-6068498 | None:intergenic | 35.0% |
!! | TAAGAGTTGATAGTTCCTTC+AGG | + | chr3_4:6068480-6068499 | None:intergenic | 35.0% |
GAGGCAAAAAAATCAGAATG+AGG | + | chr3_4:6068897-6068916 | None:intergenic | 35.0% | |
TCAGAATGAGGCAAAAAATG+AGG | + | chr3_4:6068916-6068935 | None:intergenic | 35.0% | |
GAGGCAAAAAAATCAGAATG+AGG | + | chr3_4:6068897-6068916 | None:intergenic | 35.0% | |
CTGTGTACAAGCAAAAAATG+AGG | + | chr3_4:6068947-6068966 | None:intergenic | 35.0% | |
GCCTGATATTGTTCATTGAA+TGG | - | chr3_4:6069167-6069186 | Msa0487310:intron | 35.0% | |
GGTAATTGCTAAAACATCGT+AGG | + | chr3_4:6069220-6069239 | None:intergenic | 35.0% | |
! | GTTTGTTTGGAGTATAATGG+AGG | - | chr3_4:6069330-6069349 | Msa0487310:intron | 35.0% |
!!! | AGGCAATGAGGTTTTAACTT+AGG | - | chr3_4:6069350-6069369 | Msa0487310:intron | 35.0% |
CAAAACATGTCATTGGGTTT+GGG | + | chr3_4:6069377-6069396 | None:intergenic | 35.0% | |
ACAAAACATGTCATTGGGTT+TGG | + | chr3_4:6069378-6069397 | None:intergenic | 35.0% | |
! | AAACCCAATGACATGTTTTG+TGG | - | chr3_4:6069377-6069396 | Msa0487310:intron | 35.0% |
CAAACCACAAAACATGTCAT+TGG | + | chr3_4:6069384-6069403 | None:intergenic | 35.0% | |
TGTAGTCATTTCTTCTTTGG+TGG | + | chr3_4:6069476-6069495 | None:intergenic | 35.0% | |
AAAGCAACAGAATCACTTCT+TGG | - | chr3_4:6069555-6069574 | Msa0487310:intron | 35.0% | |
AGAATGTTAGCGGAATATCT+TGG | - | chr3_4:6069996-6070015 | Msa0487310:intron | 35.0% | |
!! | GGGTGTTATTTGTAGATCTT+TGG | - | chr3_4:6070034-6070053 | Msa0487310:CDS | 35.0% |
ATAAGGTAATGTGGAGTTTC+AGG | - | chr3_4:6070188-6070207 | Msa0487310:intron | 35.0% | |
TAAGGTAATGTGGAGTTTCA+GGG | - | chr3_4:6070189-6070208 | Msa0487310:intron | 35.0% | |
CAAACAATGCTTCATTTGAC+AGG | - | chr3_4:6070340-6070359 | Msa0487310:intron | 35.0% | |
! | TTTTGCAAGTTCCCATCATA+TGG | + | chr3_4:6070366-6070385 | None:intergenic | 35.0% |
CCGATCCAAAGTTATCAAAT+AGG | - | chr3_4:6070412-6070431 | Msa0487310:intron | 35.0% | |
AAACATGGAGCTTCTTGAAA+AGG | + | chr3_4:6070551-6070570 | None:intergenic | 35.0% | |
! | CAAAACAAGCAAGAGTATGA+TGG | - | chr3_4:6070572-6070591 | Msa0487310:intron | 35.0% |
!! | AATGGTGCTGTATCATTAGA+TGG | - | chr3_4:6070615-6070634 | Msa0487310:intron | 35.0% |
GAAAATGGAACTCTTTCTCT+TGG | - | chr3_4:6070651-6070670 | Msa0487310:intron | 35.0% | |
TCACAGACAGAAAAGAGAAA+AGG | + | chr3_4:6070691-6070710 | None:intergenic | 35.0% | |
!!! | TGGTTATTTTCGGGTATAGA+AGG | - | chr3_4:6071049-6071068 | Msa0487310:intron | 35.0% |
CCACAAGGAAAATATATGCA+AGG | + | chr3_4:6071281-6071300 | None:intergenic | 35.0% | |
! | CCTTGCATATATTTTCCTTG+TGG | - | chr3_4:6071278-6071297 | Msa0487310:CDS | 35.0% |
CTACTGAAGATTGAAAAAGG+TGG | - | chr3_4:6071368-6071387 | Msa0487310:intron | 35.0% | |
TTGGAACAAAATCCAGAGAT+TGG | - | chr3_4:6071497-6071516 | Msa0487310:CDS | 35.0% | |
TGGAACAAAATCCAGAGATT+GGG | - | chr3_4:6071498-6071517 | Msa0487310:CDS | 35.0% | |
! | TATAACTGGCTTATCCTCAC+CGG | + | chr3_4:6063066-6063085 | None:intergenic | 40.0% |
!! | GGTGGATTGACAACTATAAC+TGG | + | chr3_4:6063080-6063099 | None:intergenic | 40.0% |
! | TGGCATTTCTGAAGATGGTA+TGG | - | chr3_4:6063115-6063134 | Msa0487310:intron | 40.0% |
TGAAGAGAAAGGAGAAGTCT+TGG | - | chr3_4:6063440-6063459 | Msa0487310:intron | 40.0% | |
TACCTCTAATCGGGAGATAT+GGG | + | chr3_4:6063678-6063697 | None:intergenic | 40.0% | |
TTACCTCTAATCGGGAGATA+TGG | + | chr3_4:6063679-6063698 | None:intergenic | 40.0% | |
!! | TTCTCCTCTGGGATATCTAT+TGG | + | chr3_4:6064184-6064203 | None:intergenic | 40.0% |
ATAGATATCCCAGAGGAGAA+TGG | - | chr3_4:6064184-6064203 | Msa0487310:CDS | 40.0% | |
TAGATATCCCAGAGGAGAAT+GGG | - | chr3_4:6064185-6064204 | Msa0487310:CDS | 40.0% | |
AGCTACTGATATTCAAGGTG+GGG | + | chr3_4:6064240-6064259 | None:intergenic | 40.0% | |
GAGCTACTGATATTCAAGGT+GGG | + | chr3_4:6064241-6064260 | None:intergenic | 40.0% | |
AGAGCTACTGATATTCAAGG+TGG | + | chr3_4:6064242-6064261 | None:intergenic | 40.0% | |
CAACGTGCTTTCGTTTATAC+TGG | + | chr3_4:6064466-6064485 | None:intergenic | 40.0% | |
! | TAAACGAAAGCACGTTGATG+TGG | - | chr3_4:6064469-6064488 | Msa0487310:intron | 40.0% |
TTGAATTCTCATTCCTCCCA+AGG | - | chr3_4:6064672-6064691 | Msa0487310:intron | 40.0% | |
TATAATTAGCGTGTCGTGTC+TGG | - | chr3_4:6064877-6064896 | Msa0487310:intron | 40.0% | |
TGACATCAAGCTCTTGACAT+TGG | + | chr3_4:6065472-6065491 | None:intergenic | 40.0% | |
AATGTCAAGAGCTTGATGTC+AGG | - | chr3_4:6065471-6065490 | Msa0487310:intron | 40.0% | |
TAACATGCAATGGCTAAGGA+TGG | + | chr3_4:6065666-6065685 | None:intergenic | 40.0% | |
GTCATAACATGCAATGGCTA+AGG | + | chr3_4:6065670-6065689 | None:intergenic | 40.0% | |
CAATCAAAATCACCTCGACA+CGG | + | chr3_4:6066010-6066029 | None:intergenic | 40.0% | |
AAGAGAAGACCAACTACTTC+CGG | - | chr3_4:6066156-6066175 | Msa0487310:CDS | 40.0% | |
AAATGAAACCCGGAAGTAGT+TGG | + | chr3_4:6066168-6066187 | None:intergenic | 40.0% | |
! | ACTTCCGGGTTTCATTTTCA+AGG | - | chr3_4:6066171-6066190 | Msa0487310:intron | 40.0% |
TTTCAAGGAGTTAGCGTTTG+AGG | - | chr3_4:6066186-6066205 | Msa0487310:intron | 40.0% | |
GGACTGTGTTCATTCACTTA+TGG | - | chr3_4:6066315-6066334 | Msa0487310:intron | 40.0% | |
CTATATGAGAGGGTTGTGTT+TGG | - | chr3_4:6066360-6066379 | Msa0487310:intron | 40.0% | |
ACATTTGATTGGATCTTCCC+CGG | + | chr3_4:6066545-6066564 | None:intergenic | 40.0% | |
!!! | AAGGCTTTTAAAGTGTGTGC+AGG | - | chr3_4:6066836-6066855 | Msa0487310:intron | 40.0% |
GGTCAACTAAAGTTAACAGC+AGG | - | chr3_4:6067546-6067565 | Msa0487310:intron | 40.0% | |
!!! | ACAGCAGGTTTTGGAGAAAA+TGG | - | chr3_4:6067561-6067580 | Msa0487310:intron | 40.0% |
AGGTAAACCAAAATTCAGGC+AGG | - | chr3_4:6067889-6067908 | Msa0487310:intron | 40.0% | |
! | GAAAACTCCTGCCTGAATTT+TGG | + | chr3_4:6067899-6067918 | None:intergenic | 40.0% |
TTGTGCAACATCTTTCGCAT+TGG | + | chr3_4:6068428-6068447 | None:intergenic | 40.0% | |
!! | AGGGGGAAAGTATTCTTATC+CGG | + | chr3_4:6068460-6068479 | None:intergenic | 40.0% |
TAAGAATACTTTCCCCCTGA+AGG | - | chr3_4:6068462-6068481 | Msa0487310:intron | 40.0% | |
!! | AGAGTTGATAGTTCCTTCAG+GGG | + | chr3_4:6068478-6068497 | None:intergenic | 40.0% |
AGCATAACGAATCACAGTCA+TGG | + | chr3_4:6068604-6068623 | None:intergenic | 40.0% | |
TTTGACGACATTTGCCAACT+TGG | - | chr3_4:6068970-6068989 | Msa0487310:intron | 40.0% | |
AGTCATTTCTTCTTTGGTGG+TGG | + | chr3_4:6069473-6069492 | None:intergenic | 40.0% | |
ATTCTGAACAGAACCAAGGA+GGG | + | chr3_4:6069602-6069621 | None:intergenic | 40.0% | |
!!! | TTTAGAGTTTTTGGTCGGCA+GGG | + | chr3_4:6069666-6069685 | None:intergenic | 40.0% |
TACAGGGCACATATCATTTG+TGG | + | chr3_4:6069898-6069917 | None:intergenic | 40.0% | |
TCTTGGTGAAGATCAAATGC+TGG | - | chr3_4:6070013-6070032 | Msa0487310:intron | 40.0% | |
CTTGGTGAAGATCAAATGCT+GGG | - | chr3_4:6070014-6070033 | Msa0487310:intron | 40.0% | |
AAGGTAATGTGGAGTTTCAG+GGG | - | chr3_4:6070190-6070209 | Msa0487310:intron | 40.0% | |
TGAGGAAAAACTATGGGACA+AGG | - | chr3_4:6070278-6070297 | Msa0487310:intron | 40.0% | |
TCATTTGACAGGCCATATGA+TGG | - | chr3_4:6070351-6070370 | Msa0487310:intron | 40.0% | |
CATTTGACAGGCCATATGAT+GGG | - | chr3_4:6070352-6070371 | Msa0487310:intron | 40.0% | |
GGCGGCATTATAAGAGAAAA+TGG | - | chr3_4:6070636-6070655 | Msa0487310:intron | 40.0% | |
! | GAACTCTTTCTCTTGGCTTT+GGG | - | chr3_4:6070658-6070677 | Msa0487310:intron | 40.0% |
CAACTGGTTATCAGTTCAGT+TGG | + | chr3_4:6070992-6071011 | None:intergenic | 40.0% | |
TTCAACATTTGCGTAGCTTC+TGG | + | chr3_4:6071323-6071342 | None:intergenic | 40.0% | |
! | AACAATGAAGCCTTTTGCTG+AGG | - | chr3_4:6071472-6071491 | Msa0487310:CDS | 40.0% |
CAATCTCCTAAGTCTAGCAT+AGG | + | chr3_4:6071527-6071546 | None:intergenic | 40.0% | |
GCCCAAGTTCTTCAAAGCAA+TGG | + | chr3_4:6062808-6062827 | None:intergenic | 45.0% | |
! | TGTCGCCGTGCTAATTTTGA+CGG | + | chr3_4:6062958-6062977 | None:intergenic | 45.0% |
! | TATGATGACGAAGCTGATGC+CGG | - | chr3_4:6063044-6063063 | Msa0487310:intron | 45.0% |
AGTTGTCAATCCACCGAACA+AGG | - | chr3_4:6063085-6063104 | Msa0487310:intron | 45.0% | |
ATGCCAAGTGCTTCCTTGTT+CGG | + | chr3_4:6063101-6063120 | None:intergenic | 45.0% | |
! | GCACTTGGCATTTCTGAAGA+TGG | - | chr3_4:6063110-6063129 | Msa0487310:intron | 45.0% |
!! | TGAGACTAGTCTAGTGCAAC+TGG | + | chr3_4:6063306-6063325 | None:intergenic | 45.0% |
!! | TCATCGGGTTCTGAAGAGAA+AGG | - | chr3_4:6063429-6063448 | Msa0487310:intron | 45.0% |
AAGGAGAAGTCTTGGAGTCA+TGG | - | chr3_4:6063448-6063467 | Msa0487310:intron | 45.0% | |
! | TGTTAAGGGGAGCATGTTCA+GGG | - | chr3_4:6063485-6063504 | Msa0487310:intron | 45.0% |
!!! | TGAAGGTTTTGAAGGAGACC+TGG | - | chr3_4:6063552-6063571 | Msa0487310:intron | 45.0% |
!!! | GAAGGTTTTGAAGGAGACCT+GGG | - | chr3_4:6063553-6063572 | Msa0487310:intron | 45.0% |
ATTCAGGAATCTTACCACCC+AGG | + | chr3_4:6063573-6063592 | None:intergenic | 45.0% | |
TCTAATCGGGAGATATGGGA+TGG | + | chr3_4:6063674-6063693 | None:intergenic | 45.0% | |
ATCCCATATCTCCCGATTAG+AGG | - | chr3_4:6063673-6063692 | Msa0487310:CDS | 45.0% | |
!! | CGTTTATACTGGTTTGTGCC+TGG | + | chr3_4:6064455-6064474 | None:intergenic | 45.0% |
GATGATACTATGTCCTTGGG+AGG | + | chr3_4:6064688-6064707 | None:intergenic | 45.0% | |
CTACTTTAACTCGAGCGAGA+TGG | - | chr3_4:6065144-6065163 | Msa0487310:intron | 45.0% | |
TGCAATGGCTAAGGATGGAA+AGG | + | chr3_4:6065661-6065680 | None:intergenic | 45.0% | |
TAAACGGAGCTCGATTGTCA+TGG | + | chr3_4:6065695-6065714 | None:intergenic | 45.0% | |
AGTTCAACAGTCACGTCATC+CGG | + | chr3_4:6065726-6065745 | None:intergenic | 45.0% | |
TGACGTGACTGTTGAACTTC+AGG | - | chr3_4:6065728-6065747 | Msa0487310:intron | 45.0% | |
! | TCAGTATCTTTTCCGTGTCG+AGG | - | chr3_4:6065995-6066014 | Msa0487310:CDS | 45.0% |
AGAGAAGACCAACTACTTCC+GGG | - | chr3_4:6066157-6066176 | Msa0487310:CDS | 45.0% | |
GGTTGGATCGGTAGAAATTC+CGG | - | chr3_4:6066523-6066542 | Msa0487310:intron | 45.0% | |
GTTGGATCGGTAGAAATTCC+GGG | - | chr3_4:6066524-6066543 | Msa0487310:intron | 45.0% | |
TTGGATCGGTAGAAATTCCG+GGG | - | chr3_4:6066525-6066544 | Msa0487310:intron | 45.0% | |
!!! | TGCTGCAATGCCGATTTTGT+AGG | - | chr3_4:6066677-6066696 | Msa0487310:intron | 45.0% |
AATCTTGCGAATCGCATCTG+AGG | - | chr3_4:6067931-6067950 | Msa0487310:intron | 45.0% | |
TGTTGCACAACATCTATCCC+CGG | - | chr3_4:6068438-6068457 | Msa0487310:intron | 45.0% | |
!! | GGGGAAAGTATTCTTATCCG+GGG | + | chr3_4:6068458-6068477 | None:intergenic | 45.0% |
!! | GGGGGAAAGTATTCTTATCC+GGG | + | chr3_4:6068459-6068478 | None:intergenic | 45.0% |
!! | GAGTTGATAGTTCCTTCAGG+GGG | + | chr3_4:6068477-6068496 | None:intergenic | 45.0% |
ATCTCTGTCCTCAATAGCGA+TGG | - | chr3_4:6068520-6068539 | Msa0487310:CDS | 45.0% | |
ATACCTTGCCATCGCTATTG+AGG | + | chr3_4:6068531-6068550 | None:intergenic | 45.0% | |
! | GGAGTATAATGGAGGCAATG+AGG | - | chr3_4:6069338-6069357 | Msa0487310:intron | 45.0% |
GATTCTGAACAGAACCAAGG+AGG | + | chr3_4:6069603-6069622 | None:intergenic | 45.0% | |
CAGGATTCTGAACAGAACCA+AGG | + | chr3_4:6069606-6069625 | None:intergenic | 45.0% | |
TTCAGAATCCTGAGCTTAGC+AGG | - | chr3_4:6069614-6069633 | Msa0487310:intron | 45.0% | |
TTGACAAACCTGCTAAGCTC+AGG | + | chr3_4:6069625-6069644 | None:intergenic | 45.0% | |
!!! | GTTTAGAGTTTTTGGTCGGC+AGG | + | chr3_4:6069667-6069686 | None:intergenic | 45.0% |
AGGGCACATATCATTTGTGG+AGG | + | chr3_4:6069895-6069914 | None:intergenic | 45.0% | |
! | TGGGACAAGGCTTTATGACT+AGG | - | chr3_4:6070291-6070310 | Msa0487310:intron | 45.0% |
TCAAATAGGAGAACGCCAGA+AGG | - | chr3_4:6070426-6070445 | Msa0487310:intron | 45.0% | |
! | AGAACGCCAGAAGGCTTTAT+GGG | - | chr3_4:6070435-6070454 | Msa0487310:intron | 45.0% |
GCATAACCCATAAAGCCTTC+TGG | + | chr3_4:6070444-6070463 | None:intergenic | 45.0% | |
ATTCCCATCACCTAGAGACA+AGG | - | chr3_4:6070484-6070503 | Msa0487310:intron | 45.0% | |
TGTCCTTGTCTCTAGGTGAT+GGG | + | chr3_4:6070490-6070509 | None:intergenic | 45.0% | |
! | GGTGCTGTATCATTAGATGG+CGG | - | chr3_4:6070618-6070637 | Msa0487310:intron | 45.0% |
GGAACTCTTTCTCTTGGCTT+TGG | - | chr3_4:6070657-6070676 | Msa0487310:intron | 45.0% | |
GTGAGCATGTGATGACTTCT+AGG | - | chr3_4:6070707-6070726 | Msa0487310:intron | 45.0% | |
! | TTTTCCTTGTGGGAGCAAGA+TGG | - | chr3_4:6071289-6071308 | Msa0487310:CDS | 45.0% |
ATATCCATCTTGCTCCCACA+AGG | + | chr3_4:6071296-6071315 | None:intergenic | 45.0% | |
AACATTTGCGTAGCTTCTGG+AGG | + | chr3_4:6071320-6071339 | None:intergenic | 45.0% | |
TGTTCCAATGCCTCAGCAAA+AGG | + | chr3_4:6071485-6071504 | None:intergenic | 45.0% | |
!! | TTATAATAAATTCAATAATT+AGG | + | chr3_4:6063751-6063770 | None:intergenic | 5.0% |
!!! | TTTTTTTTTTTTTTGTTAAT+AGG | - | chr3_4:6064041-6064060 | Msa0487310:intron | 5.0% |
! | GTGTTAAGGGGAGCATGTTC+AGG | - | chr3_4:6063484-6063503 | Msa0487310:intron | 50.0% |
GAGAAGCTCGGATCATATGC+AGG | - | chr3_4:6064063-6064082 | Msa0487310:intron | 50.0% | |
CAGGCCAATAGATATCCCAG+AGG | - | chr3_4:6064177-6064196 | Msa0487310:CDS | 50.0% | |
!! | TCGGTGTCGATCACGCTTAT+AGG | + | chr3_4:6064274-6064293 | None:intergenic | 50.0% |
AAGCGTGATCGACACCGAAA+AGG | - | chr3_4:6064276-6064295 | Msa0487310:CDS | 50.0% | |
AAACCATGTGTCTGAAGGCG+TGG | - | chr3_4:6067260-6067279 | Msa0487310:intron | 50.0% | |
! | GTGCCTGATTTTTGTGCCAC+TGG | - | chr3_4:6068053-6068072 | Msa0487310:intron | 50.0% |
CCACCAGTGGCACAAAAATC+AGG | + | chr3_4:6068059-6068078 | None:intergenic | 50.0% | |
!! | CCTGATTTTTGTGCCACTGG+TGG | - | chr3_4:6068056-6068075 | Msa0487310:intron | 50.0% |
AGAGCTGTGTCTGACTGCAA+AGG | - | chr3_4:6068313-6068332 | Msa0487310:CDS | 50.0% | |
TGTCCTCAATAGCGATGGCA+AGG | - | chr3_4:6068525-6068544 | Msa0487310:CDS | 50.0% | |
CTGCGCAATCTCAAGTGAGA+AGG | + | chr3_4:6068744-6068763 | None:intergenic | 50.0% | |
CTTCTCACTTGAGATTGCGC+AGG | - | chr3_4:6068742-6068761 | Msa0487310:intron | 50.0% | |
CAAGAGCTGTTGATGCTGCA+AGG | - | chr3_4:6069057-6069076 | Msa0487310:intron | 50.0% | |
! | GGTGGTGGCAAACAACAAGT+CGG | + | chr3_4:6069458-6069477 | None:intergenic | 50.0% |
CACGTGCAGAGAGACTACAT+AGG | + | chr3_4:6069534-6069553 | None:intergenic | 50.0% | |
!!! | AGTTTTTGGTCGGCAGGGAT+GGG | + | chr3_4:6069661-6069680 | None:intergenic | 50.0% |
GCTGCTGAAGCAGCTAATCT+TGG | - | chr3_4:6070122-6070141 | Msa0487310:CDS | 50.0% | |
GAGAACGCCAGAAGGCTTTA+TGG | - | chr3_4:6070434-6070453 | Msa0487310:intron | 50.0% | |
CTGTCCTTGTCTCTAGGTGA+TGG | + | chr3_4:6070491-6070510 | None:intergenic | 50.0% | |
CCTAGAGACAAGGACAGCAT+CGG | - | chr3_4:6070494-6070513 | Msa0487310:intron | 50.0% | |
CTAGAGACAAGGACAGCATC+GGG | - | chr3_4:6070495-6070514 | Msa0487310:intron | 50.0% | |
! | GAAGCCTTTTGCTGAGGCAT+TGG | - | chr3_4:6071478-6071497 | Msa0487310:CDS | 50.0% |
AGCATAGGTGTCCCAATCTC+TGG | + | chr3_4:6071512-6071531 | None:intergenic | 50.0% | |
GGGACACCTATGCTAGACTT+AGG | - | chr3_4:6071518-6071537 | Msa0487310:CDS | 50.0% | |
CCAAGTGCTTCCTTGTTCGG+TGG | + | chr3_4:6063098-6063117 | None:intergenic | 55.0% | |
!! | CCACCGAACAAGGAAGCACT+TGG | - | chr3_4:6063095-6063114 | Msa0487310:intron | 55.0% |
!!! | GGTTTTGAAGGAGACCTGGG+TGG | - | chr3_4:6063556-6063575 | Msa0487310:intron | 55.0% |
GTTTGTGCCTGGCGAGTCAA+TGG | + | chr3_4:6064444-6064463 | None:intergenic | 55.0% | |
! | GTTTTCCAGCTGACCACCAG+TGG | + | chr3_4:6068072-6068091 | None:intergenic | 55.0% |
!!! | GAGTTTTTGGTCGGCAGGGA+TGG | + | chr3_4:6069662-6069681 | None:intergenic | 55.0% |
CCGATGCTGTCCTTGTCTCT+AGG | + | chr3_4:6070497-6070516 | None:intergenic | 55.0% | |
TGACGAAGCTGATGCCGGTG+AGG | - | chr3_4:6063049-6063068 | Msa0487310:intron | 60.0% | |
GAGCGCACCCATTCTCCTCT+GGG | + | chr3_4:6064195-6064214 | None:intergenic | 60.0% | |
AGAGCGCACCCATTCTCCTC+TGG | + | chr3_4:6064196-6064215 | None:intergenic | 60.0% | |
CCTGGCGAGTCAATGGAAGC+AGG | + | chr3_4:6064437-6064456 | None:intergenic | 60.0% | |
!! | CCTGCTTCCATTGACTCGCC+AGG | - | chr3_4:6064434-6064453 | Msa0487310:intron | 60.0% |
CCTCCACGCCTTCAGACACA+TGG | + | chr3_4:6067266-6067285 | None:intergenic | 60.0% | |
! | CCATGTGTCTGAAGGCGTGG+AGG | - | chr3_4:6067263-6067282 | Msa0487310:intron | 60.0% |
! | TTGTGCCACTGGTGGTCAGC+TGG | - | chr3_4:6068064-6068083 | Msa0487310:intron | 60.0% |
ATTGGGGTCGTTGCCCTCCT+TGG | - | chr3_4:6069586-6069605 | Msa0487310:intron | 60.0% | |
TTGGTCGGCAGGGATGGGAA+AGG | + | chr3_4:6069656-6069675 | None:intergenic | 60.0% | |
! | ACAAGGACAGCATCGGGCCA+TGG | - | chr3_4:6070501-6070520 | Msa0487310:intron | 60.0% |
! | CAAGGACAGCATCGGGCCAT+GGG | - | chr3_4:6070502-6070521 | Msa0487310:intron | 60.0% |
GAACGGTCTCACGAAGCCCA+TGG | + | chr3_4:6070521-6070540 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 6062777 | 6071547 | 6062777 | ID=Msa0487310;Name=Msa0487310 |
chr3_4 | mRNA | 6062777 | 6071547 | 6062777 | ID=Msa0487310-mRNA-1;Parent=Msa0487310;Name=Msa0487310-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.42|0.31|1|0.85|0.77|22|0|967 |
chr3_4 | exon | 6071472 | 6071547 | 6071472 | ID=Msa0487310-mRNA-1:exon:2102;Parent=Msa0487310-mRNA-1 |
chr3_4 | exon | 6071193 | 6071378 | 6071193 | ID=Msa0487310-mRNA-1:exon:2101;Parent=Msa0487310-mRNA-1 |
chr3_4 | exon | 6070747 | 6070905 | 6070747 | ID=Msa0487310-mRNA-1:exon:2100;Parent=Msa0487310-mRNA-1 |
chr3_4 | exon | 6070240 | 6070261 | 6070240 | ID=Msa0487310-mRNA-1:exon:2099;Parent=Msa0487310-mRNA-1 |
chr3_4 | exon | 6070027 | 6070144 | 6070027 | ID=Msa0487310-mRNA-1:exon:2098;Parent=Msa0487310-mRNA-1 |
chr3_4 | exon | 6069843 | 6069950 | 6069843 | ID=Msa0487310-mRNA-1:exon:2097;Parent=Msa0487310-mRNA-1 |
chr3_4 | exon | 6068832 | 6068941 | 6068832 | ID=Msa0487310-mRNA-1:exon:2096;Parent=Msa0487310-mRNA-1 |
chr3_4 | exon | 6068497 | 6068677 | 6068497 | ID=Msa0487310-mRNA-1:exon:2095;Parent=Msa0487310-mRNA-1 |
chr3_4 | exon | 6068308 | 6068416 | 6068308 | ID=Msa0487310-mRNA-1:exon:2094;Parent=Msa0487310-mRNA-1 |
chr3_4 | exon | 6068117 | 6068211 | 6068117 | ID=Msa0487310-mRNA-1:exon:2093;Parent=Msa0487310-mRNA-1 |
chr3_4 | exon | 6066983 | 6067081 | 6066983 | ID=Msa0487310-mRNA-1:exon:2092;Parent=Msa0487310-mRNA-1 |
chr3_4 | exon | 6066742 | 6066808 | 6066742 | ID=Msa0487310-mRNA-1:exon:2091;Parent=Msa0487310-mRNA-1 |
chr3_4 | exon | 6066372 | 6066457 | 6066372 | ID=Msa0487310-mRNA-1:exon:2090;Parent=Msa0487310-mRNA-1 |
chr3_4 | exon | 6066200 | 6066271 | 6066200 | ID=Msa0487310-mRNA-1:exon:2089;Parent=Msa0487310-mRNA-1 |
chr3_4 | exon | 6065990 | 6066187 | 6065990 | ID=Msa0487310-mRNA-1:exon:2088;Parent=Msa0487310-mRNA-1 |
chr3_4 | exon | 6065778 | 6065918 | 6065778 | ID=Msa0487310-mRNA-1:exon:2087;Parent=Msa0487310-mRNA-1 |
chr3_4 | exon | 6065246 | 6065357 | 6065246 | ID=Msa0487310-mRNA-1:exon:2086;Parent=Msa0487310-mRNA-1 |
chr3_4 | exon | 6064689 | 6064875 | 6064689 | ID=Msa0487310-mRNA-1:exon:2085;Parent=Msa0487310-mRNA-1 |
chr3_4 | exon | 6064132 | 6064326 | 6064132 | ID=Msa0487310-mRNA-1:exon:2084;Parent=Msa0487310-mRNA-1 |
chr3_4 | exon | 6063868 | 6063962 | 6063868 | ID=Msa0487310-mRNA-1:exon:2083;Parent=Msa0487310-mRNA-1 |
chr3_4 | exon | 6063645 | 6063858 | 6063645 | ID=Msa0487310-mRNA-1:exon:2082;Parent=Msa0487310-mRNA-1 |
chr3_4 | exon | 6062777 | 6063050 | 6062777 | ID=Msa0487310-mRNA-1:exon:2081;Parent=Msa0487310-mRNA-1 |
chr3_4 | CDS | 6071472 | 6071547 | 6071472 | ID=Msa0487310-mRNA-1:cds;Parent=Msa0487310-mRNA-1 |
chr3_4 | CDS | 6071193 | 6071378 | 6071193 | ID=Msa0487310-mRNA-1:cds;Parent=Msa0487310-mRNA-1 |
chr3_4 | CDS | 6070747 | 6070905 | 6070747 | ID=Msa0487310-mRNA-1:cds;Parent=Msa0487310-mRNA-1 |
chr3_4 | CDS | 6070240 | 6070261 | 6070240 | ID=Msa0487310-mRNA-1:cds;Parent=Msa0487310-mRNA-1 |
chr3_4 | CDS | 6070027 | 6070144 | 6070027 | ID=Msa0487310-mRNA-1:cds;Parent=Msa0487310-mRNA-1 |
chr3_4 | CDS | 6069843 | 6069950 | 6069843 | ID=Msa0487310-mRNA-1:cds;Parent=Msa0487310-mRNA-1 |
chr3_4 | CDS | 6068832 | 6068941 | 6068832 | ID=Msa0487310-mRNA-1:cds;Parent=Msa0487310-mRNA-1 |
chr3_4 | CDS | 6068497 | 6068677 | 6068497 | ID=Msa0487310-mRNA-1:cds;Parent=Msa0487310-mRNA-1 |
chr3_4 | CDS | 6068308 | 6068416 | 6068308 | ID=Msa0487310-mRNA-1:cds;Parent=Msa0487310-mRNA-1 |
chr3_4 | CDS | 6068117 | 6068211 | 6068117 | ID=Msa0487310-mRNA-1:cds;Parent=Msa0487310-mRNA-1 |
chr3_4 | CDS | 6066983 | 6067081 | 6066983 | ID=Msa0487310-mRNA-1:cds;Parent=Msa0487310-mRNA-1 |
chr3_4 | CDS | 6066742 | 6066808 | 6066742 | ID=Msa0487310-mRNA-1:cds;Parent=Msa0487310-mRNA-1 |
chr3_4 | CDS | 6066372 | 6066457 | 6066372 | ID=Msa0487310-mRNA-1:cds;Parent=Msa0487310-mRNA-1 |
chr3_4 | CDS | 6066200 | 6066271 | 6066200 | ID=Msa0487310-mRNA-1:cds;Parent=Msa0487310-mRNA-1 |
chr3_4 | CDS | 6065990 | 6066187 | 6065990 | ID=Msa0487310-mRNA-1:cds;Parent=Msa0487310-mRNA-1 |
chr3_4 | CDS | 6065778 | 6065918 | 6065778 | ID=Msa0487310-mRNA-1:cds;Parent=Msa0487310-mRNA-1 |
chr3_4 | CDS | 6065246 | 6065357 | 6065246 | ID=Msa0487310-mRNA-1:cds;Parent=Msa0487310-mRNA-1 |
chr3_4 | CDS | 6064689 | 6064875 | 6064689 | ID=Msa0487310-mRNA-1:cds;Parent=Msa0487310-mRNA-1 |
chr3_4 | CDS | 6064132 | 6064326 | 6064132 | ID=Msa0487310-mRNA-1:cds;Parent=Msa0487310-mRNA-1 |
chr3_4 | CDS | 6063868 | 6063962 | 6063868 | ID=Msa0487310-mRNA-1:cds;Parent=Msa0487310-mRNA-1 |
chr3_4 | CDS | 6063645 | 6063858 | 6063645 | ID=Msa0487310-mRNA-1:cds;Parent=Msa0487310-mRNA-1 |
chr3_4 | CDS | 6062777 | 6063050 | 6062777 | ID=Msa0487310-mRNA-1:cds;Parent=Msa0487310-mRNA-1 |
Gene Sequence |
Protein sequence |