AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0049750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0049750 MtrunA17_Chr4g0057301 96.429 588 13 2 1 588 1 580 0.0 1131
Msa0049750 MtrunA17_Chr8g0350381 41.743 218 121 3 372 588 323 535 1.01e-44 166
Msa0049750 MtrunA17_Chr8g0350381 34.028 288 137 15 1 266 36 292 1.97e-20 95.1
Msa0049750 MtrunA17_Chr4g0058781 31.138 167 101 5 432 586 206 370 3.31e-13 71.6
Msa0049750 MtrunA17_Chr1g0188921 31.746 189 88 5 429 587 288 465 2.04e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0049750 AT4G11740.1 47.876 612 247 17 1 588 1 564 4.54e-137 410
Msa0049750 AT4G23040.1 45.805 596 244 17 1 588 1 525 3.47e-121 369
Msa0049750 AT4G11740.2 43.470 513 218 16 1 489 1 465 5.09e-89 284
Msa0049750 AT4G00752.1 53.846 117 47 1 472 588 359 468 1.05e-32 131
Msa0049750 AT4G00752.1 28.883 412 208 12 1 395 1 344 1.47e-28 119
Msa0049750 AT4G10790.1 31.953 169 86 5 438 587 321 479 3.90e-13 72.4

Find 174 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAAAGCTTCTTGCTTAT+TGG 0.125120 1_2:-3257839 None:intergenic
AACAATAACCGTATCTAAAT+TGG 0.200110 1_2:-3258163 None:intergenic
TGCGGAGGACTGCTGCTTTC+CGG 0.215239 1_2:-3256610 None:intergenic
CCTGGAGCTTATGAGATCTT+AGG 0.219787 1_2:-3257487 None:intergenic
GTAGGATCAATAAGAGAAAA+TGG 0.285471 1_2:-3255439 None:intergenic
ATGATGAAACAAAGAGGATT+TGG 0.297214 1_2:-3253990 None:intergenic
GGCGATAACCACTTCCTTCC+GGG 0.309185 1_2:-3256831 None:intergenic
CGCCCACGACGGCTGCCATC+TGG 0.310057 1_2:-3257458 None:intergenic
CCAATAGTTGAAGATGTTAC+TGG 0.310930 1_2:+3255598 Msa0049750:CDS
CCAGTAACATCTTCAACTAT+TGG 0.316434 1_2:-3255598 None:intergenic
TCTCTTATTGATCCTACAAT+TGG 0.317933 1_2:+3255445 Msa0049750:CDS
TCTATGTCATTGCTGCTATC+TGG 0.323869 1_2:-3255763 None:intergenic
GTGCAGGACGTGAGTGAATC+TGG 0.324522 1_2:+3255946 Msa0049750:intron
TGCAGTTTCATTGTCCTTGA+AGG 0.329311 1_2:+3256014 Msa0049750:CDS
ATTGGATTTAAATTATTTGC+AGG 0.348056 1_2:-3258145 None:intergenic
GGAATTTGCCTTACCTCTCT+TGG 0.348395 1_2:-3255526 None:intergenic
ACATGAGTTCATGCAGAATA+GGG 0.354183 1_2:+3256867 Msa0049750:CDS
ATGACACTCCCATGTATATC+TGG 0.359077 1_2:-3255640 None:intergenic
AGTATACTTCTCCCAATTGT+AGG 0.369406 1_2:-3255457 None:intergenic
CCCATGTATATCTGGACCTT+GGG 0.371893 1_2:-3255632 None:intergenic
CATCTTCAACTATTGGAATA+TGG 0.374805 1_2:-3255591 None:intergenic
ATTCGTGGATGCTTTGTTGT+AGG 0.381356 1_2:+3258049 Msa0049750:three_prime_UTR
AGAATCTCAAAGAAAGTTGC+AGG 0.386414 1_2:+3257182 Msa0049750:CDS
CACATGAGTTCATGCAGAAT+AGG 0.393615 1_2:+3256866 Msa0049750:CDS
CGGCGATAACCACTTCCTTC+CGG 0.398155 1_2:-3256832 None:intergenic
TGTTGTGCCTGCCAGTGTGC+TGG 0.398181 1_2:-3256584 None:intergenic
TCACCCTCCTTCACCATCAT+TGG 0.401882 1_2:+3256921 Msa0049750:CDS
TGGTACTGTGGTAGTAAATA+TGG 0.401964 1_2:+3256415 Msa0049750:intron
AAAAGTGATTGCCTTGGGTT+AGG 0.405676 1_2:-3255970 None:intergenic
TCAACTCCTTGTGTCTTAGA+TGG 0.413557 1_2:-3256259 None:intergenic
ATATGGTCATTGTAGATTGC+AGG 0.414538 1_2:+3256432 Msa0049750:CDS
CCAAAGGCACGCCTAGGATA+TGG 0.415543 1_2:-3257775 None:intergenic
CTCTCGTCTGGATGCCTCAA+TGG 0.415695 1_2:-3255806 None:intergenic
GTGTCAATCGTCTCTTGATT+AGG 0.417630 1_2:-3254063 None:intergenic
CGTTCCCCAAGGAGATTTCA+TGG 0.423137 1_2:+3255348 Msa0049750:CDS
TCATCATCAGAGGATGGTTC+TGG 0.423795 1_2:-3257407 None:intergenic
TATATCCATGAAATCTCCTT+GGG 0.423971 1_2:-3255353 None:intergenic
CTCTTATTGATCCTACAATT+GGG 0.431169 1_2:+3255446 Msa0049750:CDS
TGGAGGCTCAGCGCTTGATA+AGG 0.432269 1_2:+3256941 Msa0049750:CDS
AGACACAAGGAGTTGACTTA+GGG 0.445695 1_2:+3256266 Msa0049750:CDS
TAGAGGAGATGCCTTTGGTT+AGG 0.447607 1_2:+3256494 Msa0049750:CDS
AACTTAAAGGTGTACCTTCA+AGG 0.447852 1_2:-3256028 None:intergenic
CTCACCAGTCTGTAACTGCT+TGG 0.449344 1_2:-3257640 None:intergenic
AGATGCCTTTGGTTAGGAAC+AGG 0.451031 1_2:+3256500 Msa0049750:CDS
CCTCTAAAAGTGATTGCCTT+GGG 0.451247 1_2:-3255975 None:intergenic
CCATATCCTAGGCGTGCCTT+TGG 0.452267 1_2:+3257775 Msa0049750:CDS
TGGTGGTAGAGAGACTTCTT+TGG 0.454142 1_2:-3257387 None:intergenic
CGAAGGAGACAGAAATTTGA+TGG 0.458140 1_2:+3255168 Msa0049750:CDS
GATGAGTGACAAACGGCGCC+TGG 0.460210 1_2:-3255504 None:intergenic
TTGGATTTAAATTATTTGCA+GGG 0.460676 1_2:-3258144 None:intergenic
GGAGGCTCAGCGCTTGATAA+GGG 0.466359 1_2:+3256942 Msa0049750:CDS
AAGAAAGTTGCAGGAAGAGC+AGG 0.467946 1_2:+3257191 Msa0049750:CDS
GCAAATTCCGATAGAGGATA+AGG 0.469648 1_2:+3255540 Msa0049750:CDS
GCGCTTGATAAGGGAACAAC+AGG 0.471422 1_2:+3256951 Msa0049750:CDS
CTATATCCATGAAATCTCCT+TGG 0.473947 1_2:-3255354 None:intergenic
AAGACACAAGGAGTTGACTT+AGG 0.474030 1_2:+3256265 Msa0049750:CDS
TCACTTAGCTCCACAGGGTC+AGG 0.475192 1_2:+3256538 Msa0049750:CDS
CCCTCCTTCACCATCATTGG+AGG 0.475775 1_2:+3256924 Msa0049750:CDS
TGCAATGTTCGGTGGAATCC+CGG 0.476007 1_2:+3256813 Msa0049750:CDS
AGTATACTTGATACTCATCT+TGG 0.477017 1_2:+3255472 Msa0049750:CDS
CTTCATAGATATTGGTAGAC+AGG 0.477272 1_2:+3257612 Msa0049750:CDS
ATGCTTGAGGCTGCAATGTT+CGG 0.477862 1_2:+3256802 Msa0049750:CDS
GATGCTGGAGCACCTACGGC+AGG 0.478392 1_2:+3256235 Msa0049750:CDS
AGATGTAGAGGAGATGCCTT+TGG 0.483061 1_2:+3256489 Msa0049750:CDS
ACTTATCATGGAAATATTCG+TGG 0.488746 1_2:+3258034 Msa0049750:three_prime_UTR
GGTAAGGCAAATTCCGATAG+AGG 0.489342 1_2:+3255534 Msa0049750:CDS
AATTGCACTGCAAAAGCTTC+AGG 0.492758 1_2:+3254116 Msa0049750:CDS
CTTCTAAACTCTACGGCGTA+CGG 0.493880 1_2:+3253907 Msa0049750:five_prime_UTR
GGGTGATATGCAAGAGGTGC+GGG 0.494974 1_2:-3256904 None:intergenic
CATGTGTCACTTAGCTCCAC+AGG 0.497077 1_2:+3256532 Msa0049750:CDS
TTAGGGGAAGTATCTTCAAA+TGG 0.499966 1_2:+3256283 Msa0049750:CDS
ACTGGCAGGCACAACAGTTC+CGG 0.502879 1_2:+3256591 Msa0049750:CDS
CTACCATCCTTATCCTCTAT+CGG 0.505961 1_2:-3255547 None:intergenic
TCCCATGTATATCTGGACCT+TGG 0.507661 1_2:-3255633 None:intergenic
TTCTCCAATGTGGGAGCACT+AGG 0.508488 1_2:-3255736 None:intergenic
TCCTCTAAAAGTGATTGCCT+TGG 0.509045 1_2:-3255976 None:intergenic
GGTGAAGAATTAGTCGGAGC+AGG 0.510649 1_2:-3255697 None:intergenic
TGAAGAAGATGAAGATGTAG+AGG 0.512456 1_2:+3256477 Msa0049750:CDS
ATGCCAGATGGCAGCCGTCG+TGG 0.515721 1_2:+3257455 Msa0049750:CDS
CAAGAGGTGCGGGCTGAGGA+TGG 0.523670 1_2:-3256894 None:intergenic
CTAGGTCTCGCACTACTGTC+AGG 0.525591 1_2:-3255718 None:intergenic
TAGGCGTGCCTTTGGTGTTG+AGG 0.525926 1_2:+3257783 Msa0049750:CDS
GACACATTCATCAGCATCAC+CGG 0.531398 1_2:+3254081 Msa0049750:CDS
GAAACTGCACGAGCAAGCTC+AGG 0.531446 1_2:-3256000 None:intergenic
GCTTATGAGATCTTAGGAAT+CGG 0.531602 1_2:-3257481 None:intergenic
ATTATTTGCAGGGGAAGAGA+TGG 0.532664 1_2:-3258134 None:intergenic
TGCCAGATGGCAGCCGTCGT+GGG 0.532912 1_2:+3257456 Msa0049750:CDS
CCTAAGATCTCATAAGCTCC+AGG 0.534553 1_2:+3257487 Msa0049750:CDS
AGCATCTTTGCCTGACCCTG+TGG 0.535288 1_2:-3256548 None:intergenic
GGCATCCAGACGAGAGGCTG+AGG 0.536461 1_2:+3255813 Msa0049750:CDS
AAGGACTATACTTCATCAGA+TGG 0.537129 1_2:-3256649 None:intergenic
CGTGTACAAGAAGGTGATGC+TGG 0.537918 1_2:+3256220 Msa0049750:CDS
CTTGCAAAAGATAAAAGAGA+TGG 0.538424 1_2:-3255406 None:intergenic
TGAGGAAAGTGCTGTGACAT+TGG 0.539969 1_2:+3257801 Msa0049750:CDS
GAGACAGAAATTTGATGGCC+AGG 0.541997 1_2:+3255173 Msa0049750:CDS
ATCGAGTCCAGCACACTGGC+AGG 0.544729 1_2:+3256577 Msa0049750:CDS
AAGCGCTGAGCCTCCAATGA+TGG 0.546680 1_2:-3256934 None:intergenic
GGTGGAATCCCGGAAGGAAG+TGG 0.546810 1_2:+3256823 Msa0049750:CDS
CATGAAATCTCCTTGGGGAA+CGG 0.548281 1_2:-3255347 None:intergenic
AATATCAAATCATGTTCAAG+TGG 0.556375 1_2:-3253932 None:intergenic
GCTGTGACATTGGACGAACT+TGG 0.558529 1_2:+3257811 Msa0049750:CDS
AGGTGATGCTGGAGCACCTA+CGG 0.559902 1_2:+3256231 Msa0049750:CDS
CTATACTTCATCAGATGGGA+AGG 0.562623 1_2:-3256644 None:intergenic
TCTCTTGGATGAGTGACAAA+CGG 0.564540 1_2:-3255511 None:intergenic
TATCATTCTTCTAAACTCTA+CGG 0.567389 1_2:+3253900 Msa0049750:five_prime_UTR
AGCAACCTCAGCTTCCGCAA+TGG 0.570576 1_2:-3257133 None:intergenic
AGCTCTGCCGCCGTTCCCCA+AGG 0.572207 1_2:+3255337 Msa0049750:intron
TTTCAATATTTACAGTGGGG+TGG 0.572452 1_2:+3256748 Msa0049750:intron
ATCTGGTAAATTCTCCAATG+TGG 0.573046 1_2:-3255746 None:intergenic
GTTAATGCATATTTCAGCGA+AGG 0.573755 1_2:+3255151 Msa0049750:CDS
GATTGCGATTTCGATTTCCA+TGG 0.575402 1_2:+3254035 Msa0049750:exon
GCCCAAGGTCCAGATATACA+TGG 0.578375 1_2:+3255631 Msa0049750:CDS
CAAACCAAGCAGTTACAGAC+TGG 0.578668 1_2:+3257636 Msa0049750:CDS
TATGCAAGAGGTGCGGGCTG+AGG 0.580181 1_2:-3256898 None:intergenic
AGTCAATCAACTCCTCAAGC+TGG 0.583922 1_2:+3255568 Msa0049750:CDS
CTCTTGATTAGGTGTCGCCA+TGG 0.585370 1_2:-3254052 None:intergenic
GGGAAGTATCTTCAAATGGA+AGG 0.585921 1_2:+3256287 Msa0049750:CDS
TGCAGGACGTGAGTGAATCT+GGG 0.588133 1_2:+3255947 Msa0049750:intron
GTGGGGTGGCATGTCTTCAG+TGG 0.588272 1_2:+3256762 Msa0049750:intron
CATGAGTTCATGCAGAATAG+GGG 0.589737 1_2:+3256868 Msa0049750:CDS
TCACTCATCCAAGAGAGGTA+AGG 0.590566 1_2:+3255518 Msa0049750:CDS
AATGATTCGTGCAGCCATTG+AGG 0.594407 1_2:+3255792 Msa0049750:CDS
TCATCTTGGTGCAACAAACC+AGG 0.596500 1_2:+3255486 Msa0049750:CDS
ACTGGAACTGTTCATGCCCA+AGG 0.596583 1_2:+3255616 Msa0049750:CDS
TGCAATTGGTTGAGAAACAC+CGG 0.598757 1_2:-3254100 None:intergenic
GAAGGCCATTGCGGAAGCTG+AGG 0.599946 1_2:+3257128 Msa0049750:CDS
CACAGCACTGTCATCATCAG+AGG 0.600630 1_2:-3257417 None:intergenic
GTCTTAGATGGCCCTGCCGT+AGG 0.601129 1_2:-3256247 None:intergenic
TCTGGTAAATTCTCCAATGT+GGG 0.601343 1_2:-3255745 None:intergenic
GCAAAAGATAAAAGAGATGG+AGG 0.602367 1_2:-3255403 None:intergenic
TCAACACCAAAGGCACGCCT+AGG 0.602812 1_2:-3257781 None:intergenic
ACTCATGTGGTGCATAAGCA+CGG 0.608070 1_2:-3256852 None:intergenic
TTGATGATGATGAAACAAAG+AGG 0.609697 1_2:-3253996 None:intergenic
TGGATTTAAATTATTTGCAG+GGG 0.611208 1_2:-3258143 None:intergenic
TGTCTGCTTCTAATGATGCA+AGG 0.612016 1_2:-3257092 None:intergenic
AAAGCACGGCGTGTACAAGA+AGG 0.613259 1_2:+3256211 Msa0049750:CDS
AGCTGAGGTTGCTCGCGAAG+AGG 0.613437 1_2:+3257143 Msa0049750:CDS
GGTCATTGTAGATTGCAGGC+AGG 0.615122 1_2:+3256436 Msa0049750:CDS
TGAGCCTCCAATGATGGTGA+AGG 0.617026 1_2:-3256928 None:intergenic
CTTGAGGCTGCAATGTTCGG+TGG 0.621722 1_2:+3256805 Msa0049750:CDS
GAAATCTCCTTGGGGAACGG+CGG 0.621741 1_2:-3255344 None:intergenic
ATGCTGGAGCACCTACGGCA+GGG 0.622987 1_2:+3256236 Msa0049750:CDS
ATTGGAATATGGCCAGCTTG+AGG 0.623410 1_2:-3255580 None:intergenic
GTAGACCTGTTCCTAACCAA+AGG 0.623848 1_2:-3256505 None:intergenic
GCCTCCAATGATGGTGAAGG+AGG 0.625027 1_2:-3256925 None:intergenic
TTAGGAATCGGCGCCCACGA+CGG 0.625136 1_2:-3257469 None:intergenic
GGCAGGTAAGACCATATCCT+AGG 0.626242 1_2:+3257764 Msa0049750:intron
AGCACTTTCCTCAACACCAA+AGG 0.630829 1_2:-3257791 None:intergenic
AGGGTGATATGCAAGAGGTG+CGG 0.631640 1_2:-3256905 None:intergenic
AAAAGAATTGAAGGCCATTG+CGG 0.632012 1_2:+3257119 Msa0049750:CDS
GTGAATCTGGGCCTAACCCA+AGG 0.632081 1_2:+3255959 Msa0049750:CDS
CTGTCAGGTGAAGAATTAGT+CGG 0.632592 1_2:-3255703 None:intergenic
AGGACTATACTTCATCAGAT+GGG 0.635714 1_2:-3256648 None:intergenic
ATTAATCGAGTCCAGCACAC+TGG 0.635866 1_2:+3256573 Msa0049750:CDS
ATATCAAATCATGTTCAAGT+GGG 0.636947 1_2:-3253931 None:intergenic
CCCAAGGTCCAGATATACAT+GGG 0.639087 1_2:+3255632 Msa0049750:CDS
ATGTTCGGTGGAATCCCGGA+AGG 0.645721 1_2:+3256817 Msa0049750:CDS
GCACTGTCATCATCAGAGGA+TGG 0.645765 1_2:-3257413 None:intergenic
TCATCAGAGGATGGTTCTGG+TGG 0.646164 1_2:-3257404 None:intergenic
GGGAAGGAATTGTCATTATG+CGG 0.648088 1_2:-3256628 None:intergenic
GAGACCTAGTGCTCCCACAT+TGG 0.648732 1_2:+3255732 Msa0049750:CDS
CTATTCTGCATGAACTCATG+TGG 0.657273 1_2:-3256865 None:intergenic
GACACAAGGAGTTGACTTAG+GGG 0.664345 1_2:+3256267 Msa0049750:CDS
ATTCCGATAGAGGATAAGGA+TGG 0.664553 1_2:+3255544 Msa0049750:CDS
AAGGAATTGTCATTATGCGG+AGG 0.670479 1_2:-3256625 None:intergenic
CATTGAGGCATCCAGACGAG+AGG 0.670635 1_2:+3255807 Msa0049750:CDS
TGACAGTGCTGTGAATCTGA+TGG 0.684961 1_2:+3257427 Msa0049750:CDS
GTTTGTCACTCATCCAAGAG+AGG 0.689319 1_2:+3255513 Msa0049750:CDS
ATGTGTCACTTAGCTCCACA+GGG 0.692890 1_2:+3256533 Msa0049750:CDS
ATATCCATGAAATCTCCTTG+GGG 0.695995 1_2:-3255352 None:intergenic
GCAGGGCCATCTAAGACACA+AGG 0.699427 1_2:+3256253 Msa0049750:CDS
CCTCCAATGATGGTGAAGGA+GGG 0.700161 1_2:-3256924 None:intergenic
GAAGGAGGGTGATATGCAAG+AGG 0.710406 1_2:-3256910 None:intergenic
TGATGAAGCAGTAATGCTTG+AGG 0.722177 1_2:+3256789 Msa0049750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATTTATTAAAATGTCT+TGG + chr1_2:3254402-3254421 Msa0049750:intron 10.0%
!! AATAAGATAATTTAAAAACA+AGG - chr1_2:3254612-3254631 None:intergenic 10.0%
!!! TGACTTTATTTTTTTTATAT+TGG + chr1_2:3256131-3256150 Msa0049750:intron 10.0%
!!! TTTTTTTTATATTGGAAATT+TGG + chr1_2:3256139-3256158 Msa0049750:intron 10.0%
!!! TTTGTAAACATTTTTTTTCA+TGG + chr1_2:3255098-3255117 Msa0049750:intron 15.0%
!!! ATTGTTTTTTTTGATATTGA+TGG + chr1_2:3255299-3255318 Msa0049750:intron 15.0%
!!! TATTTCTTAATTGTTTTTTC+CGG + chr1_2:3255878-3255897 Msa0049750:intron 15.0%
!! AATACAACATATAAAATTAG+AGG - chr1_2:3255907-3255926 None:intergenic 15.0%
!! AAAAAATAAAGTCAAAGTTA+CGG - chr1_2:3256125-3256144 None:intergenic 15.0%
!!! TAATTTTCAATATTTACAGT+GGG + chr1_2:3256744-3256763 Msa0049750:intron 15.0%
!!! AATTTTAAGATAAGAATGAT+AGG - chr1_2:3257682-3257701 None:intergenic 15.0%
!!! TGATTTGATATTTTTCAGTT+CGG + chr1_2:3253943-3253962 Msa0049750:five_prime_UTR 20.0%
!!! ACAAATTGTTATTACTCTTT+AGG + chr1_2:3254167-3254186 Msa0049750:intron 20.0%
!! TTATGGTTTATCTAATCAAT+AGG + chr1_2:3254230-3254249 Msa0049750:intron 20.0%
!! TATGGTTTATCTAATCAATA+GGG + chr1_2:3254231-3254250 Msa0049750:intron 20.0%
!! AACAAAGCAATATTAAATCT+AGG - chr1_2:3254568-3254587 None:intergenic 20.0%
!! TCAACAATATAAGAAACTAA+TGG - chr1_2:3254885-3254904 None:intergenic 20.0%
!! TATGAGAAAGTAAACAATAT+CGG - chr1_2:3255014-3255033 None:intergenic 20.0%
!! ATAGAATAAGTTCTCTTTAA+TGG + chr1_2:3255044-3255063 Msa0049750:intron 20.0%
!! CAAAAAAAACAATGATGAAT+GGG - chr1_2:3255292-3255311 None:intergenic 20.0%
!! TCAAAAAAAACAATGATGAA+TGG - chr1_2:3255293-3255312 None:intergenic 20.0%
!! GGAAAAAACAATTAAGAAAT+AGG - chr1_2:3255879-3255898 None:intergenic 20.0%
!!! ATTTCTTAATTGTTTTTTCC+GGG + chr1_2:3255879-3255898 Msa0049750:intron 20.0%
!! CACTGTAAATATTGAAAATT+AGG - chr1_2:3256745-3256764 None:intergenic 20.0%
!!! CTAATTTTCAATATTTACAG+TGG + chr1_2:3256743-3256762 Msa0049750:intron 20.0%
!!! AATTTTCAATATTTACAGTG+GGG + chr1_2:3256745-3256764 Msa0049750:intron 20.0%
!!! CATCATTTTTCTGAATAATT+AGG - chr1_2:3257710-3257729 None:intergenic 20.0%
!!! TTTTTTTGTTTTGTTTCTGT+TGG + chr1_2:3257731-3257750 Msa0049750:intron 20.0%
!! TTGGATTTAAATTATTTGCA+GGG - chr1_2:3258147-3258166 None:intergenic 20.0%
!! ATTGGATTTAAATTATTTGC+AGG - chr1_2:3258148-3258167 None:intergenic 20.0%
!!! TTTTTGAGGGTTAATATGTA+AGG - chr1_2:3253867-3253886 None:intergenic 25.0%
! TATCATTCTTCTAAACTCTA+CGG + chr1_2:3253900-3253919 Msa0049750:five_prime_UTR 25.0%
! ATATCAAATCATGTTCAAGT+GGG - chr1_2:3253934-3253953 None:intergenic 25.0%
! AATATCAAATCATGTTCAAG+TGG - chr1_2:3253935-3253954 None:intergenic 25.0%
! TGTAATCAGAAAAGTGAATA+AGG - chr1_2:3254150-3254169 None:intergenic 25.0%
!! AGCGATTGAATTTTCAATTA+TGG + chr1_2:3254213-3254232 Msa0049750:intron 25.0%
!! GAAAATTGTATTTTTCTCTC+TGG + chr1_2:3254292-3254311 Msa0049750:intron 25.0%
!! TATTTGTTGAATGATCAATG+AGG + chr1_2:3254320-3254339 Msa0049750:intron 25.0%
! TATAATCAGTTCTATGATGT+TGG + chr1_2:3254454-3254473 Msa0049750:intron 25.0%
!!! TTATTGCTGATTTCTGAATT+TGG + chr1_2:3254586-3254605 Msa0049750:intron 25.0%
! AAACAAGAAGAAAACTGTAA+TGG - chr1_2:3254638-3254657 None:intergenic 25.0%
! AAAAATAAGCTAATCCAAAC+AGG - chr1_2:3254721-3254740 None:intergenic 25.0%
! AAAAATGTTTACAAATGCAG+AGG - chr1_2:3255093-3255112 None:intergenic 25.0%
!!! TAAACATTTTTTTTCATGGC+AGG + chr1_2:3255102-3255121 Msa0049750:intron 25.0%
!!! TTTTTTTTGATATTGATGGC+CGG + chr1_2:3255303-3255322 Msa0049750:intron 25.0%
!!! ATTAATTTGTATTTCCCACA+TGG + chr1_2:3255924-3255943 Msa0049750:intron 25.0%
! AATAAGAGAACACAACTTAA+AGG - chr1_2:3256044-3256063 None:intergenic 25.0%
! TTTGACTGTTATATATGACA+TGG + chr1_2:3256395-3256414 Msa0049750:intron 25.0%
! TCTGAAAATTCATAAAGTGA+AGG - chr1_2:3256671-3256690 None:intergenic 25.0%
!! CACTTTATGAATTTTCAGAA+CGG + chr1_2:3256672-3256691 Msa0049750:intron 25.0%
!! ACTTTATGAATTTTCAGAAC+GGG + chr1_2:3256673-3256692 Msa0049750:intron 25.0%
! TAGGTTAAAGTTTCTTACAT+AGG + chr1_2:3256992-3257011 Msa0049750:intron 25.0%
! TAAATCTGTAACTAATTGCA+TGG + chr1_2:3257220-3257239 Msa0049750:intron 25.0%
! TTCATTGCAATTAGTTATAC+TGG + chr1_2:3257247-3257266 Msa0049750:intron 25.0%
! TAGAAATCAAATTCCCATTT+CGG + chr1_2:3257308-3257327 Msa0049750:intron 25.0%
!! AAAAGAGACTGAAAATTTTC+AGG - chr1_2:3257589-3257608 None:intergenic 25.0%
! TGGATTTAAATTATTTGCAG+GGG - chr1_2:3258146-3258165 None:intergenic 25.0%
!!! GTAGTTTCTGTTGTTTTTGA+GGG - chr1_2:3253880-3253899 None:intergenic 30.0%
!!! AGTAGTTTCTGTTGTTTTTG+AGG - chr1_2:3253881-3253900 None:intergenic 30.0%
!!! GAGGATTTGGTTTTGTTTTT+GGG - chr1_2:3253980-3253999 None:intergenic 30.0%
!!! AGAGGATTTGGTTTTGTTTT+TGG - chr1_2:3253981-3254000 None:intergenic 30.0%
ATGATGAAACAAAGAGGATT+TGG - chr1_2:3253993-3254012 None:intergenic 30.0%
!! TTGATGATGATGAAACAAAG+AGG - chr1_2:3253999-3254018 None:intergenic 30.0%
CAGAAAAGTGAATAAGGAAA+AGG - chr1_2:3254144-3254163 None:intergenic 30.0%
ACTTATGCAAGTAGTTATCT+CGG + chr1_2:3254684-3254703 Msa0049750:intron 30.0%
TAGTTATCTCGGATGATTTA+GGG + chr1_2:3254695-3254714 Msa0049750:intron 30.0%
TATTATTCATAAGCTTGTCG+AGG + chr1_2:3254784-3254803 Msa0049750:intron 30.0%
TAAGAAACTAATGGCATGTT+TGG - chr1_2:3254876-3254895 None:intergenic 30.0%
TAAGTTCTCTTTAATGGTGT+TGG + chr1_2:3255050-3255069 Msa0049750:intron 30.0%
TGCTTCTAATGCATGAAAAA+AGG - chr1_2:3255203-3255222 None:intergenic 30.0%
TATATCCATGAAATCTCCTT+GGG - chr1_2:3255356-3255375 None:intergenic 30.0%
CTTGCAAAAGATAAAAGAGA+TGG - chr1_2:3255409-3255428 None:intergenic 30.0%
GTAGGATCAATAAGAGAAAA+TGG - chr1_2:3255442-3255461 None:intergenic 30.0%
TCTCTTATTGATCCTACAAT+TGG + chr1_2:3255445-3255464 Msa0049750:CDS 30.0%
CTCTTATTGATCCTACAATT+GGG + chr1_2:3255446-3255465 Msa0049750:CDS 30.0%
AGTATACTTGATACTCATCT+TGG + chr1_2:3255472-3255491 Msa0049750:CDS 30.0%
CATCTTCAACTATTGGAATA+TGG - chr1_2:3255594-3255613 None:intergenic 30.0%
TTATATATGACATGGTACTG+TGG + chr1_2:3256403-3256422 Msa0049750:intron 30.0%
!! GTGTCACTTATTTCTTACAT+AGG + chr1_2:3256973-3256992 Msa0049750:intron 30.0%
CTTACATAGGTTAAAGTTAC+AGG + chr1_2:3257005-3257024 Msa0049750:intron 30.0%
TGTCTATGTTTATTTGATGC+AGG + chr1_2:3257059-3257078 Msa0049750:intron 30.0%
AGACAGAGAAAAAGAATTGA+AGG + chr1_2:3257110-3257129 Msa0049750:CDS 30.0%
ATCAAACTCATACTTTCCTA+TGG + chr1_2:3257284-3257303 Msa0049750:intron 30.0%
! GGAATTTGATTTCTATCCAT+AGG - chr1_2:3257303-3257322 None:intergenic 30.0%
! TTGCATTTTCATAAACTGTC+AGG + chr1_2:3257343-3257362 Msa0049750:intron 30.0%
TTTCATAAACTGTCAGGAAT+TGG + chr1_2:3257349-3257368 Msa0049750:intron 30.0%
! CTAGCAGCATATTTTATAAC+AGG - chr1_2:3257521-3257540 None:intergenic 30.0%
! TAGTGTTTTCCTCCTTTATT+TGG + chr1_2:3257538-3257557 Msa0049750:intron 30.0%
! CTTTTCGACTTCATAGATAT+TGG + chr1_2:3257604-3257623 Msa0049750:CDS 30.0%
!! TTGTTTCTGTTGGTTATTGT+TGG + chr1_2:3257741-3257760 Msa0049750:intron 30.0%
! TGTTTCTGTTGGTTATTGTT+GGG + chr1_2:3257742-3257761 Msa0049750:intron 30.0%
AAACAAAGCTTCTTGCTTAT+TGG - chr1_2:3257842-3257861 None:intergenic 30.0%
!!! TAAGCAAGAAGCTTTGTTTT+TGG + chr1_2:3257843-3257862 Msa0049750:CDS 30.0%
!!! CTTCTAGCTTTTTTTCACAA+GGG - chr1_2:3257881-3257900 None:intergenic 30.0%
!!! TCTTCTAGCTTTTTTTCACA+AGG - chr1_2:3257882-3257901 None:intergenic 30.0%
!! AAGAACGTTGCATTTTAATC+TGG + chr1_2:3257953-3257972 Msa0049750:three_prime_UTR 30.0%
ACTTATCATGGAAATATTCG+TGG + chr1_2:3258034-3258053 Msa0049750:three_prime_UTR 30.0%
! TATGATCCTTGCTGTCAATT+TGG + chr1_2:3254506-3254525 Msa0049750:intron 35.0%
! ATGATCCTTGCTGTCAATTT+GGG + chr1_2:3254507-3254526 Msa0049750:intron 35.0%
!! TCTTGTTGACTTAAAGCTAG+AGG + chr1_2:3254531-3254550 Msa0049750:intron 35.0%
GTAGTTATCTCGGATGATTT+AGG + chr1_2:3254694-3254713 Msa0049750:intron 35.0%
AACTAATGGCATGTTTGGAT+TGG - chr1_2:3254871-3254890 None:intergenic 35.0%
TTAGCGTTAGATCTTACTCT+TGG + chr1_2:3254920-3254939 Msa0049750:intron 35.0%
TAGAAGCAAACTAGCATAAG+AGG - chr1_2:3254980-3254999 None:intergenic 35.0%
GTTAATGCATATTTCAGCGA+AGG + chr1_2:3255151-3255170 Msa0049750:CDS 35.0%
AGAAATGTACCTTGTCACTA+TGG + chr1_2:3255234-3255253 Msa0049750:intron 35.0%
AATGTAACACCATAGTGACA+AGG - chr1_2:3255246-3255265 None:intergenic 35.0%
ATATCCATGAAATCTCCTTG+GGG - chr1_2:3255355-3255374 None:intergenic 35.0%
CTATATCCATGAAATCTCCT+TGG - chr1_2:3255357-3255376 None:intergenic 35.0%
GCAAAAGATAAAAGAGATGG+AGG - chr1_2:3255406-3255425 None:intergenic 35.0%
AGTATACTTCTCCCAATTGT+AGG - chr1_2:3255460-3255479 None:intergenic 35.0%
CCAGTAACATCTTCAACTAT+TGG - chr1_2:3255601-3255620 None:intergenic 35.0%
CCAATAGTTGAAGATGTTAC+TGG + chr1_2:3255598-3255617 Msa0049750:CDS 35.0%
TCTGGTAAATTCTCCAATGT+GGG - chr1_2:3255748-3255767 None:intergenic 35.0%
ATCTGGTAAATTCTCCAATG+TGG - chr1_2:3255749-3255768 None:intergenic 35.0%
CATATAAAATTAGAGGAGCC+CGG - chr1_2:3255900-3255919 None:intergenic 35.0%
! AACTTAAAGGTGTACCTTCA+AGG - chr1_2:3256031-3256050 None:intergenic 35.0%
TTTCATGTCAGAAGCAATTC+AGG - chr1_2:3256167-3256186 None:intergenic 35.0%
!! TTAGGGGAAGTATCTTCAAA+TGG + chr1_2:3256283-3256302 Msa0049750:CDS 35.0%
TGGTACTGTGGTAGTAAATA+TGG + chr1_2:3256415-3256434 Msa0049750:intron 35.0%
ATATGGTCATTGTAGATTGC+AGG + chr1_2:3256432-3256451 Msa0049750:CDS 35.0%
TGAAGAAGATGAAGATGTAG+AGG + chr1_2:3256477-3256496 Msa0049750:CDS 35.0%
AGGACTATACTTCATCAGAT+GGG - chr1_2:3256651-3256670 None:intergenic 35.0%
AAGGACTATACTTCATCAGA+TGG - chr1_2:3256652-3256671 None:intergenic 35.0%
TTTCAATATTTACAGTGGGG+TGG + chr1_2:3256748-3256767 Msa0049750:intron 35.0%
ACATGAGTTCATGCAGAATA+GGG + chr1_2:3256867-3256886 Msa0049750:CDS 35.0%
! AAGTTACAGGTTTTACGAGA+TGG + chr1_2:3257018-3257037 Msa0049750:intron 35.0%
TTTACGAGATGGTCTAATTG+TGG + chr1_2:3257029-3257048 Msa0049750:intron 35.0%
AAAAGAATTGAAGGCCATTG+CGG + chr1_2:3257119-3257138 Msa0049750:CDS 35.0%
AGAATCTCAAAGAAAGTTGC+AGG + chr1_2:3257182-3257201 Msa0049750:CDS 35.0%
GCTTATGAGATCTTAGGAAT+CGG - chr1_2:3257484-3257503 None:intergenic 35.0%
TTATAACAGGCATCTTTACC+TGG - chr1_2:3257508-3257527 None:intergenic 35.0%
ATGTATGCACCAAATAAAGG+AGG - chr1_2:3257550-3257569 None:intergenic 35.0%
AGCATGTATGCACCAAATAA+AGG - chr1_2:3257553-3257572 None:intergenic 35.0%
CTTCATAGATATTGGTAGAC+AGG + chr1_2:3257612-3257631 Msa0049750:CDS 35.0%
AGAATGATAGGCAGAAAGTT+GGG - chr1_2:3257670-3257689 None:intergenic 35.0%
AAGAATGATAGGCAGAAAGT+TGG - chr1_2:3257671-3257690 None:intergenic 35.0%
! GTTTCTGTTGGTTATTGTTG+GGG + chr1_2:3257743-3257762 Msa0049750:intron 35.0%
! TGCAACGTTCTTTTGTGTAT+TGG - chr1_2:3257945-3257964 None:intergenic 35.0%
GATTGCGATTTCGATTTCCA+TGG + chr1_2:3254035-3254054 Msa0049750:exon 40.0%
GTGTCAATCGTCTCTTGATT+AGG - chr1_2:3254066-3254085 None:intergenic 40.0%
TGCAATTGGTTGAGAAACAC+CGG - chr1_2:3254103-3254122 None:intergenic 40.0%
! TGAAGCTTTTGCAGTGCAAT+TGG - chr1_2:3254117-3254136 None:intergenic 40.0%
AATTGCACTGCAAAAGCTTC+AGG + chr1_2:3254116-3254135 Msa0049750:CDS 40.0%
AAGATCCCAAATTGACAGCA+AGG - chr1_2:3254515-3254534 None:intergenic 40.0%
! GTTCTCTTTAATGGTGTTGG+AGG + chr1_2:3255053-3255072 Msa0049750:intron 40.0%
!!! TTTTTTTCATGGCAGGAGCA+TGG + chr1_2:3255109-3255128 Msa0049750:intron 40.0%
CGAAGGAGACAGAAATTTGA+TGG + chr1_2:3255168-3255187 Msa0049750:CDS 40.0%
! TGCATGAAAAAAGGCATACC+TGG - chr1_2:3255194-3255213 None:intergenic 40.0%
TCTCTTGGATGAGTGACAAA+CGG - chr1_2:3255514-3255533 None:intergenic 40.0%
GCAAATTCCGATAGAGGATA+AGG + chr1_2:3255540-3255559 Msa0049750:CDS 40.0%
ATTCCGATAGAGGATAAGGA+TGG + chr1_2:3255544-3255563 Msa0049750:CDS 40.0%
CTACCATCCTTATCCTCTAT+CGG - chr1_2:3255550-3255569 None:intergenic 40.0%
ATGACACTCCCATGTATATC+TGG - chr1_2:3255643-3255662 None:intergenic 40.0%
CTGTCAGGTGAAGAATTAGT+CGG - chr1_2:3255706-3255725 None:intergenic 40.0%
TCTATGTCATTGCTGCTATC+TGG - chr1_2:3255766-3255785 None:intergenic 40.0%
AAAAGTGATTGCCTTGGGTT+AGG - chr1_2:3255973-3255992 None:intergenic 40.0%
! CCTCTAAAAGTGATTGCCTT+GGG - chr1_2:3255978-3255997 None:intergenic 40.0%
! TCCTCTAAAAGTGATTGCCT+TGG - chr1_2:3255979-3255998 None:intergenic 40.0%
TGCAGTTTCATTGTCCTTGA+AGG + chr1_2:3256014-3256033 Msa0049750:CDS 40.0%
! CTGTTCTGGTTGTAAAACAC+TGG - chr1_2:3256095-3256114 None:intergenic 40.0%
TAAAGTCAAAGTTACGGCAC+CGG - chr1_2:3256119-3256138 None:intergenic 40.0%
TCAACTCCTTGTGTCTTAGA+TGG - chr1_2:3256262-3256281 None:intergenic 40.0%
! AAGACACAAGGAGTTGACTT+AGG + chr1_2:3256265-3256284 Msa0049750:CDS 40.0%
! AGACACAAGGAGTTGACTTA+GGG + chr1_2:3256266-3256285 Msa0049750:CDS 40.0%
!! GGGAAGTATCTTCAAATGGA+AGG + chr1_2:3256287-3256306 Msa0049750:CDS 40.0%
AAGGAATTGTCATTATGCGG+AGG - chr1_2:3256628-3256647 None:intergenic 40.0%
GGGAAGGAATTGTCATTATG+CGG - chr1_2:3256631-3256650 None:intergenic 40.0%
CTATACTTCATCAGATGGGA+AGG - chr1_2:3256647-3256666 None:intergenic 40.0%
TGATGAAGCAGTAATGCTTG+AGG + chr1_2:3256789-3256808 Msa0049750:CDS 40.0%
CTATTCTGCATGAACTCATG+TGG - chr1_2:3256868-3256887 None:intergenic 40.0%
CACATGAGTTCATGCAGAAT+AGG + chr1_2:3256866-3256885 Msa0049750:CDS 40.0%
CATGAGTTCATGCAGAATAG+GGG + chr1_2:3256868-3256887 Msa0049750:CDS 40.0%
TGTCTGCTTCTAATGATGCA+AGG - chr1_2:3257095-3257114 None:intergenic 40.0%
AGAGTAAGCAACACCGAAAT+GGG - chr1_2:3257324-3257343 None:intergenic 40.0%
AAGAGTAAGCAACACCGAAA+TGG - chr1_2:3257325-3257344 None:intergenic 40.0%
CTGATGGTAAAAATGCCAGA+TGG + chr1_2:3257443-3257462 Msa0049750:CDS 40.0%
! GCGTGTGCTTTTACTTATCA+TGG + chr1_2:3258022-3258041 Msa0049750:three_prime_UTR 40.0%
! ATTCGTGGATGCTTTGTTGT+AGG + chr1_2:3258049-3258068 Msa0049750:three_prime_UTR 40.0%
ATTATTTGCAGGGGAAGAGA+TGG - chr1_2:3258137-3258156 None:intergenic 40.0%
CTTCTAAACTCTACGGCGTA+CGG + chr1_2:3253907-3253926 Msa0049750:five_prime_UTR 45.0%
GACACATTCATCAGCATCAC+CGG + chr1_2:3254081-3254100 Msa0049750:CDS 45.0%
! GAGACAGAAATTTGATGGCC+AGG + chr1_2:3255173-3255192 Msa0049750:CDS 45.0%
CATGAAATCTCCTTGGGGAA+CGG - chr1_2:3255350-3255369 None:intergenic 45.0%
! TCATCTTGGTGCAACAAACC+AGG + chr1_2:3255486-3255505 Msa0049750:CDS 45.0%
GTTTGTCACTCATCCAAGAG+AGG + chr1_2:3255513-3255532 Msa0049750:CDS 45.0%
TCACTCATCCAAGAGAGGTA+AGG + chr1_2:3255518-3255537 Msa0049750:CDS 45.0%
GGAATTTGCCTTACCTCTCT+TGG - chr1_2:3255529-3255548 None:intergenic 45.0%
GGTAAGGCAAATTCCGATAG+AGG + chr1_2:3255534-3255553 Msa0049750:CDS 45.0%
AGTCAATCAACTCCTCAAGC+TGG + chr1_2:3255568-3255587 Msa0049750:CDS 45.0%
ATTGGAATATGGCCAGCTTG+AGG - chr1_2:3255583-3255602 None:intergenic 45.0%
CCCATGTATATCTGGACCTT+GGG - chr1_2:3255635-3255654 None:intergenic 45.0%
CCCAAGGTCCAGATATACAT+GGG + chr1_2:3255632-3255651 Msa0049750:CDS 45.0%
TCCCATGTATATCTGGACCT+TGG - chr1_2:3255636-3255655 None:intergenic 45.0%
AATGATTCGTGCAGCCATTG+AGG + chr1_2:3255792-3255811 Msa0049750:CDS 45.0%
TTGTATTTCCCACATGGTGC+AGG + chr1_2:3255930-3255949 Msa0049750:intron 45.0%
!! CCCAAGGCAATCACTTTTAG+AGG + chr1_2:3255975-3255994 Msa0049750:CDS 45.0%
! GTTTTACAACCAGAACAGCC+CGG + chr1_2:3256097-3256116 Msa0049750:intron 45.0%
AAAGTCAAAGTTACGGCACC+GGG - chr1_2:3256118-3256137 None:intergenic 45.0%
! CTTTTTCTTGCTCTGCTGTC+TGG - chr1_2:3256195-3256214 None:intergenic 45.0%
CAGCAGAGCAAGAAAAAGCA+CGG + chr1_2:3256197-3256216 Msa0049750:CDS 45.0%
! GACACAAGGAGTTGACTTAG+GGG + chr1_2:3256267-3256286 Msa0049750:CDS 45.0%
AGATGTAGAGGAGATGCCTT+TGG + chr1_2:3256489-3256508 Msa0049750:CDS 45.0%
TAGAGGAGATGCCTTTGGTT+AGG + chr1_2:3256494-3256513 Msa0049750:CDS 45.0%
AGATGCCTTTGGTTAGGAAC+AGG + chr1_2:3256500-3256519 Msa0049750:CDS 45.0%
GTAGACCTGTTCCTAACCAA+AGG - chr1_2:3256508-3256527 None:intergenic 45.0%
!! ATGTGTCACTTAGCTCCACA+GGG + chr1_2:3256533-3256552 Msa0049750:CDS 45.0%
ATTAATCGAGTCCAGCACAC+TGG + chr1_2:3256573-3256592 Msa0049750:CDS 45.0%
ATGCTTGAGGCTGCAATGTT+CGG + chr1_2:3256802-3256821 Msa0049750:CDS 45.0%
ACTCATGTGGTGCATAAGCA+CGG - chr1_2:3256855-3256874 None:intergenic 45.0%
AAGAAAGTTGCAGGAAGAGC+AGG + chr1_2:3257191-3257210 Msa0049750:CDS 45.0%
TGGTGGTAGAGAGACTTCTT+TGG - chr1_2:3257390-3257409 None:intergenic 45.0%
TCATCATCAGAGGATGGTTC+TGG - chr1_2:3257410-3257429 None:intergenic 45.0%
TGACAGTGCTGTGAATCTGA+TGG + chr1_2:3257427-3257446 Msa0049750:CDS 45.0%
CCTGGAGCTTATGAGATCTT+AGG - chr1_2:3257490-3257509 None:intergenic 45.0%
CCTAAGATCTCATAAGCTCC+AGG + chr1_2:3257487-3257506 Msa0049750:CDS 45.0%
CAAACCAAGCAGTTACAGAC+TGG + chr1_2:3257636-3257655 Msa0049750:CDS 45.0%
AGCACTTTCCTCAACACCAA+AGG - chr1_2:3257794-3257813 None:intergenic 45.0%
!! TGAGGAAAGTGCTGTGACAT+TGG + chr1_2:3257801-3257820 Msa0049750:CDS 45.0%
! CTCTTGATTAGGTGTCGCCA+TGG - chr1_2:3254055-3254074 None:intergenic 50.0%
! CGGATGATTTAGGGCCTGTT+TGG + chr1_2:3254704-3254723 Msa0049750:intron 50.0%
!! TTTTCATGGCAGGAGCATGG+TGG + chr1_2:3255112-3255131 Msa0049750:intron 50.0%
CGTTCCCCAAGGAGATTTCA+TGG + chr1_2:3255348-3255367 Msa0049750:CDS 50.0%
ACTGGAACTGTTCATGCCCA+AGG + chr1_2:3255616-3255635 Msa0049750:CDS 50.0%
GCCCAAGGTCCAGATATACA+TGG + chr1_2:3255631-3255650 Msa0049750:CDS 50.0%
GGTGAAGAATTAGTCGGAGC+AGG - chr1_2:3255700-3255719 None:intergenic 50.0%
!! TTCTCCAATGTGGGAGCACT+AGG - chr1_2:3255739-3255758 None:intergenic 50.0%
! ATTTTCCTCAGCCTCTCGTC+TGG - chr1_2:3255821-3255840 None:intergenic 50.0%
TGCAGGACGTGAGTGAATCT+GGG + chr1_2:3255947-3255966 Msa0049750:intron 50.0%
AAAGCACGGCGTGTACAAGA+AGG + chr1_2:3256211-3256230 Msa0049750:CDS 50.0%
CGTGTACAAGAAGGTGATGC+TGG + chr1_2:3256220-3256239 Msa0049750:CDS 50.0%
GAATTCATTGCAGCAGCCAC+AGG - chr1_2:3256343-3256362 None:intergenic 50.0%
GGTCATTGTAGATTGCAGGC+AGG + chr1_2:3256436-3256455 Msa0049750:CDS 50.0%
!! CATGTGTCACTTAGCTCCAC+AGG + chr1_2:3256532-3256551 Msa0049750:CDS 50.0%
! TGCAATGTTCGGTGGAATCC+CGG + chr1_2:3256813-3256832 Msa0049750:CDS 50.0%
AGGGTGATATGCAAGAGGTG+CGG - chr1_2:3256908-3256927 None:intergenic 50.0%
GAAGGAGGGTGATATGCAAG+AGG - chr1_2:3256913-3256932 None:intergenic 50.0%
TCACCCTCCTTCACCATCAT+TGG + chr1_2:3256921-3256940 Msa0049750:CDS 50.0%
! CCTCCAATGATGGTGAAGGA+GGG - chr1_2:3256927-3256946 None:intergenic 50.0%
! TGAGCCTCCAATGATGGTGA+AGG - chr1_2:3256931-3256950 None:intergenic 50.0%
GCGCTTGATAAGGGAACAAC+AGG + chr1_2:3256951-3256970 Msa0049750:CDS 50.0%
!! TCATCAGAGGATGGTTCTGG+TGG - chr1_2:3257407-3257426 None:intergenic 50.0%
GCACTGTCATCATCAGAGGA+TGG - chr1_2:3257416-3257435 None:intergenic 50.0%
CACAGCACTGTCATCATCAG+AGG - chr1_2:3257420-3257439 None:intergenic 50.0%
CTCACCAGTCTGTAACTGCT+TGG - chr1_2:3257643-3257662 None:intergenic 50.0%
! CTGTTGGTTATTGTTGGGGC+AGG + chr1_2:3257747-3257766 Msa0049750:intron 50.0%
GGCAGGTAAGACCATATCCT+AGG + chr1_2:3257764-3257783 Msa0049750:intron 50.0%
GCTGTGACATTGGACGAACT+TGG + chr1_2:3257811-3257830 Msa0049750:CDS 50.0%
GAAATCTCCTTGGGGAACGG+CGG - chr1_2:3255347-3255366 None:intergenic 55.0%
CTAGGTCTCGCACTACTGTC+AGG - chr1_2:3255721-3255740 None:intergenic 55.0%
GAGACCTAGTGCTCCCACAT+TGG + chr1_2:3255732-3255751 Msa0049750:CDS 55.0%
CTCTCGTCTGGATGCCTCAA+TGG - chr1_2:3255809-3255828 None:intergenic 55.0%
! CATTGAGGCATCCAGACGAG+AGG + chr1_2:3255807-3255826 Msa0049750:CDS 55.0%
ACTCACGTCCTGCACCATGT+GGG - chr1_2:3255941-3255960 None:intergenic 55.0%
GTGCAGGACGTGAGTGAATC+TGG + chr1_2:3255946-3255965 Msa0049750:intron 55.0%
GTGAATCTGGGCCTAACCCA+AGG + chr1_2:3255959-3255978 Msa0049750:CDS 55.0%
GAAACTGCACGAGCAAGCTC+AGG - chr1_2:3256003-3256022 None:intergenic 55.0%
! AGGTGATGCTGGAGCACCTA+CGG + chr1_2:3256231-3256250 Msa0049750:CDS 55.0%
! GCAGGGCCATCTAAGACACA+AGG + chr1_2:3256253-3256272 Msa0049750:CDS 55.0%
TCCTGCATGTTGTCCACCTG+TGG + chr1_2:3256324-3256343 Msa0049750:intron 55.0%
TTCATTGCAGCAGCCACAGG+TGG - chr1_2:3256340-3256359 None:intergenic 55.0%
TCACTTAGCTCCACAGGGTC+AGG + chr1_2:3256538-3256557 Msa0049750:CDS 55.0%
AGCATCTTTGCCTGACCCTG+TGG - chr1_2:3256551-3256570 None:intergenic 55.0%
ACTGGCAGGCACAACAGTTC+CGG + chr1_2:3256591-3256610 Msa0049750:CDS 55.0%
CTTGAGGCTGCAATGTTCGG+TGG + chr1_2:3256805-3256824 Msa0049750:CDS 55.0%
! ATGTTCGGTGGAATCCCGGA+AGG + chr1_2:3256817-3256836 Msa0049750:CDS 55.0%
GGCGATAACCACTTCCTTCC+GGG - chr1_2:3256834-3256853 None:intergenic 55.0%
CGGCGATAACCACTTCCTTC+CGG - chr1_2:3256835-3256854 None:intergenic 55.0%
! GGGTGATATGCAAGAGGTGC+GGG - chr1_2:3256907-3256926 None:intergenic 55.0%
CCCTCCTTCACCATCATTGG+AGG + chr1_2:3256924-3256943 Msa0049750:CDS 55.0%
! GCCTCCAATGATGGTGAAGG+AGG - chr1_2:3256928-3256947 None:intergenic 55.0%
!! AAGCGCTGAGCCTCCAATGA+TGG - chr1_2:3256937-3256956 None:intergenic 55.0%
TGGAGGCTCAGCGCTTGATA+AGG + chr1_2:3256941-3256960 Msa0049750:CDS 55.0%
GGAGGCTCAGCGCTTGATAA+GGG + chr1_2:3256942-3256961 Msa0049750:CDS 55.0%
AGCAACCTCAGCTTCCGCAA+TGG - chr1_2:3257136-3257155 None:intergenic 55.0%
! CCAAAGGCACGCCTAGGATA+TGG - chr1_2:3257778-3257797 None:intergenic 55.0%
CCATATCCTAGGCGTGCCTT+TGG + chr1_2:3257775-3257794 Msa0049750:CDS 55.0%
! TCAACACCAAAGGCACGCCT+AGG - chr1_2:3257784-3257803 None:intergenic 55.0%
!! TAGGCGTGCCTTTGGTGTTG+AGG + chr1_2:3257783-3257802 Msa0049750:CDS 55.0%
GCAGAGCTGTCATGAGAGGC+CGG - chr1_2:3255325-3255344 None:intergenic 60.0%
GATGAGTGACAAACGGCGCC+TGG - chr1_2:3255507-3255526 None:intergenic 60.0%
CACTCACGTCCTGCACCATG+TGG - chr1_2:3255942-3255961 None:intergenic 60.0%
! ATGCTGGAGCACCTACGGCA+GGG + chr1_2:3256236-3256255 Msa0049750:CDS 60.0%
GTCTTAGATGGCCCTGCCGT+AGG - chr1_2:3256250-3256269 None:intergenic 60.0%
GCCACAGGTGGACAACATGC+AGG - chr1_2:3256328-3256347 None:intergenic 60.0%
ATCGAGTCCAGCACACTGGC+AGG + chr1_2:3256577-3256596 Msa0049750:CDS 60.0%
TGTTGTGCCTGCCAGTGTGC+TGG - chr1_2:3256587-3256606 None:intergenic 60.0%
!! TGCGGAGGACTGCTGCTTTC+CGG - chr1_2:3256613-3256632 None:intergenic 60.0%
GTGGGGTGGCATGTCTTCAG+TGG + chr1_2:3256762-3256781 Msa0049750:intron 60.0%
GGTGGAATCCCGGAAGGAAG+TGG + chr1_2:3256823-3256842 Msa0049750:CDS 60.0%
! TATGCAAGAGGTGCGGGCTG+AGG - chr1_2:3256901-3256920 None:intergenic 60.0%
GAAGGCCATTGCGGAAGCTG+AGG + chr1_2:3257128-3257147 Msa0049750:CDS 60.0%
AGCTGAGGTTGCTCGCGAAG+AGG + chr1_2:3257143-3257162 Msa0049750:CDS 60.0%
TTAGGAATCGGCGCCCACGA+CGG - chr1_2:3257472-3257491 None:intergenic 60.0%
GGCGGCAGAGCTGTCATGAG+AGG - chr1_2:3255329-3255348 None:intergenic 65.0%
GGCATCCAGACGAGAGGCTG+AGG + chr1_2:3255813-3255832 Msa0049750:CDS 65.0%
! GTTACGGCACCGGGCTGTTC+TGG - chr1_2:3256109-3256128 None:intergenic 65.0%
! GATGCTGGAGCACCTACGGC+AGG + chr1_2:3256235-3256254 Msa0049750:CDS 65.0%
! CAAGAGGTGCGGGCTGAGGA+TGG - chr1_2:3256897-3256916 None:intergenic 65.0%
ATGCCAGATGGCAGCCGTCG+TGG + chr1_2:3257455-3257474 Msa0049750:CDS 65.0%
TGCCAGATGGCAGCCGTCGT+GGG + chr1_2:3257456-3257475 Msa0049750:CDS 65.0%
AGCTCTGCCGCCGTTCCCCA+AGG + chr1_2:3255337-3255356 Msa0049750:intron 70.0%
CGCCCACGACGGCTGCCATC+TGG - chr1_2:3257461-3257480 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 3253856 3258172 3253856 ID=Msa0049750;Name=Msa0049750
chr1_2 mRNA 3253856 3258172 3253856 ID=Msa0049750-mRNA-1;Parent=Msa0049750;Name=Msa0049750-mRNA-1;_AED=0.12;_eAED=0.12;_QI=198|0.9|0.90|1|1|1|11|296|588
chr1_2 exon 3253856 3254137 3253856 ID=Msa0049750-mRNA-1:exon:758;Parent=Msa0049750-mRNA-1
chr1_2 exon 3255124 3255194 3255124 ID=Msa0049750-mRNA-1:exon:759;Parent=Msa0049750-mRNA-1
chr1_2 exon 3255339 3255870 3255339 ID=Msa0049750-mRNA-1:exon:760;Parent=Msa0049750-mRNA-1
chr1_2 exon 3255952 3256035 3255952 ID=Msa0049750-mRNA-1:exon:761;Parent=Msa0049750-mRNA-1
chr1_2 exon 3256196 3256308 3256196 ID=Msa0049750-mRNA-1:exon:762;Parent=Msa0049750-mRNA-1
chr1_2 exon 3256429 3256660 3256429 ID=Msa0049750-mRNA-1:exon:763;Parent=Msa0049750-mRNA-1
chr1_2 exon 3256763 3256972 3256763 ID=Msa0049750-mRNA-1:exon:764;Parent=Msa0049750-mRNA-1
chr1_2 exon 3257081 3257212 3257081 ID=Msa0049750-mRNA-1:exon:765;Parent=Msa0049750-mRNA-1
chr1_2 exon 3257365 3257508 3257365 ID=Msa0049750-mRNA-1:exon:766;Parent=Msa0049750-mRNA-1
chr1_2 exon 3257601 3257657 3257601 ID=Msa0049750-mRNA-1:exon:767;Parent=Msa0049750-mRNA-1
chr1_2 exon 3257769 3258172 3257769 ID=Msa0049750-mRNA-1:exon:768;Parent=Msa0049750-mRNA-1
chr1_2 five_prime_UTR 3253856 3254053 3253856 ID=Msa0049750-mRNA-1:five_prime_utr;Parent=Msa0049750-mRNA-1
chr1_2 CDS 3254054 3254137 3254054 ID=Msa0049750-mRNA-1:cds;Parent=Msa0049750-mRNA-1
chr1_2 CDS 3255124 3255194 3255124 ID=Msa0049750-mRNA-1:cds;Parent=Msa0049750-mRNA-1
chr1_2 CDS 3255339 3255870 3255339 ID=Msa0049750-mRNA-1:cds;Parent=Msa0049750-mRNA-1
chr1_2 CDS 3255952 3256035 3255952 ID=Msa0049750-mRNA-1:cds;Parent=Msa0049750-mRNA-1
chr1_2 CDS 3256196 3256308 3256196 ID=Msa0049750-mRNA-1:cds;Parent=Msa0049750-mRNA-1
chr1_2 CDS 3256429 3256660 3256429 ID=Msa0049750-mRNA-1:cds;Parent=Msa0049750-mRNA-1
chr1_2 CDS 3256763 3256972 3256763 ID=Msa0049750-mRNA-1:cds;Parent=Msa0049750-mRNA-1
chr1_2 CDS 3257081 3257212 3257081 ID=Msa0049750-mRNA-1:cds;Parent=Msa0049750-mRNA-1
chr1_2 CDS 3257365 3257508 3257365 ID=Msa0049750-mRNA-1:cds;Parent=Msa0049750-mRNA-1
chr1_2 CDS 3257601 3257657 3257601 ID=Msa0049750-mRNA-1:cds;Parent=Msa0049750-mRNA-1
chr1_2 CDS 3257769 3257876 3257769 ID=Msa0049750-mRNA-1:cds;Parent=Msa0049750-mRNA-1
chr1_2 three_prime_UTR 3257877 3258172 3257877 ID=Msa0049750-mRNA-1:three_prime_utr;Parent=Msa0049750-mRNA-1
Gene Sequence

>Msa0049750

ATGGCGACACCTAATCAAGAGACGATTGACACATTCATCAGCATCACCGGTGTTTCTCAACCAATTGCACTGCAAAAGCTTCAGGAGCATGGTGGTAGTCTTAATGAAGCTGTTAATGCATATTTCAGCGAAGGAGACAGAAATTTGATGGCCAGCTCTGCCGCCGTTCCCCAAGGAGATTTCATGGATATAGATGATCAACATGATGAAATTCTTAGACCTCCATCTCTTTTATCTTTTGCAAGAAATCTCGATCCATTTTCTCTTATTGATCCTACAATTGGGAGAAGTATACTTGATACTCATCTTGGTGCAACAAACCAGGCGCCGTTTGTCACTCATCCAAGAGAGGTAAGGCAAATTCCGATAGAGGATAAGGATGGTAGTCAATCAACTCCTCAAGCTGGCCATATTCCAATAGTTGAAGATGTTACTGGAACTGTTCATGCCCAAGGTCCAGATATACATGGGAGTGTCATAGTACTTGATGATGATGATGATGACAATACTCTGCCTGCTCCGACTAATTCTTCACCTGACAGTAGTGCGAGACCTAGTGCTCCCACATTGGAGAATTTACCAGATAGCAGCAATGACATAGAAGAAGAAATGATTCGTGCAGCCATTGAGGCATCCAGACGAGAGGCTGAGGAAAATTACAGCAATCATGAAGTTGACAGACAAATTGACGTGAGTGAATCTGGGCCTAACCCAAGGCAATCACTTTTAGAGGATCCTGAGCTTGCTCGTGCAGTTTCATTGTCCTTGAAGACAGCAGAGCAAGAAAAAGCACGGCGTGTACAAGAAGGTGATGCTGGAGCACCTACGGCAGGGCCATCTAAGACACAAGGAGTTGACTTAGGGGAAGTATCTTCAAATGGAAGTAAATATGGTCATTGTAGATTGCAGGCAGGAGAAGATGAAGATGAAGATGAAGAAGATGAAGATGTAGAGGAGATGCCTTTGGTTAGGAACAGGTCTACTAGACATGTGTCACTTAGCTCCACAGGGTCAGGCAAAGATGCTGAATTAATCGAGTCCAGCACACTGGCAGGCACAACAGTTCCGGAAAGCAGCAGTCCTCCGCATAATGACAATTCCTTCCCATCTGATGAATGGGGTGGCATGTCTTCAGTGGAACATGATGAAGCAGTAATGCTTGAGGCTGCAATGTTCGGTGGAATCCCGGAAGGAAGTGGTTATCGCCGTGCTTATGCACCACATGAGTTCATGCAGAATAGGGGTTTCCATCCTCAGCCCGCACCTCTTGCATATCACCCTCCTTCACCATCATTGGAGGCTCAGCGCTTGATAAGGGAACAACAGGATGATGAATACCTTGCATCATTAGAAGCAGACAGAGAAAAAGAATTGAAGGCCATTGCGGAAGCTGAGGTTGCTCGCGAAGAGGAAAAACAGAGAGCAGAAGAATCTCAAAGAAAGTTGCAGGAAGAGCAGGAATTGGAAGCACAGTTAGCTGCCAAAGAAGTCTCTCTACCACCAGAACCATCCTCTGATGATGACAGTGCTGTGAATCTGATGGTAAAAATGCCAGATGGCAGCCGTCGTGGGCGCCGATTCCTAAGATCTCATAAGCTCCAGTCTCTTTTCGACTTCATAGATATTGGTAGACAGGTCAAACCAAGCAGTTACAGACTGGTAAGACCATATCCTAGGCGTGCCTTTGGTGTTGAGGAAAGTGCTGTGACATTGGACGAACTTGGCTTAACCAATAAGCAAGAAGCTTTGTTTTTGGAGTTAGTCTGA
Protein sequence

>Msa0049750

MATPNQETIDTFISITGVSQPIALQKLQEHGGSLNEAVNAYFSEGDRNLMASSAAVPQGDFMDIDDQHDEILRPPSLLSFARNLDPFSLIDPTIGRSILDTHLGATNQAPFVTHPREVRQIPIEDKDGSQSTPQAGHIPIVEDVTGTVHAQGPDIHGSVIVLDDDDDDNTLPAPTNSSPDSSARPSAPTLENLPDSSNDIEEEMIRAAIEASRREAEENYSNHEVDRQIDVSESGPNPRQSLLEDPELARAVSLSLKTAEQEKARRVQEGDAGAPTAGPSKTQGVDLGEVSSNGSKYGHCRLQAGEDEDEDEEDEDVEEMPLVRNRSTRHVSLSSTGSGKDAELIESSTLAGTTVPESSSPPHNDNSFPSDEWGGMSSVEHDEAVMLEAAMFGGIPEGSGYRRAYAPHEFMQNRGFHPQPAPLAYHPPSPSLEAQRLIREQQDDEYLASLEADREKELKAIAEAEVAREEEKQRAEESQRKLQEEQELEAQLAAKEVSLPPEPSSDDDSAVNLMVKMPDGSRRGRRFLRSHKLQSLFDFIDIGRQVKPSSYRLVRPYPRRAFGVEESAVTLDELGLTNKQEALFLELV*