Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009300 | Msa0057610 | 0.800051 | 1.727917e-48 | -8.615850e-47 |
| Msa0009300 | Msa0171940 | 0.800893 | 1.163973e-48 | -8.615850e-47 |
| Msa0009300 | Msa0226460 | 0.807168 | 5.766439e-50 | -8.615850e-47 |
| Msa0009300 | Msa0523810 | 0.806174 | 9.351495e-50 | -8.615850e-47 |
| Msa0009300 | Msa1331250 | 0.803679 | 3.107537e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009300 | MtrunA17_Chr5g0430431 | 52.222 | 90 | 33 | 1 | 383 | 462 | 167 | 256 | 1.27e-23 | 100 |
| Msa0009300 | MtrunA17_Chr4g0045361 | 55.952 | 84 | 10 | 1 | 311 | 367 | 320 | 403 | 4.39e-19 | 89.7 |
| Msa0009300 | MtrunA17_Chr1g0210301 | 80.952 | 42 | 6 | 1 | 462 | 501 | 165 | 206 | 1.83e-13 | 73.6 |
| Msa0009300 | MtrunA17_Chr7g0262401 | 46.087 | 115 | 32 | 1 | 142 | 226 | 430 | 544 | 2.46e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 102 sgRNAs with CRISPR-Local
Find 523 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTAATTCTTGGAGGTTTA+TGG | 0.185779 | 1_1:+13580665 | Msa0009300:CDS |
| TTCCCATTTGTTCCATGTTT+TGG | 0.210127 | 1_1:-13584513 | None:intergenic |
| GTCAAAATTTACATATTTCT+TGG | 0.239711 | 1_1:-13580803 | None:intergenic |
| ATTTAGTATCCAGTTCTTTC+AGG | 0.264346 | 1_1:-13583995 | None:intergenic |
| GCGAAACGTCACCGTTGTTC+AGG | 0.296020 | 1_1:+13580310 | Msa0009300:CDS |
| TAAAGGTCAAAACGCTTCTT+TGG | 0.297829 | 1_1:+13584597 | Msa0009300:CDS |
| GATCACTCTGTTGTAATTCT+TGG | 0.298794 | 1_1:+13580655 | Msa0009300:CDS |
| ATGCTCTTTGAGATGTGATT+AGG | 0.306923 | 1_1:-13582107 | None:intergenic |
| AACTCGCAATGGCGAGTTAA+AGG | 0.315385 | 1_1:+13584580 | Msa0009300:CDS |
| CTGGAATTTGAAGACATATA+TGG | 0.318108 | 1_1:+13579620 | Msa0009300:CDS |
| GAGAAAGAGGAGAGAGAGAG+AGG | 0.325780 | 1_1:+13575806 | Msa0009300:CDS |
| TGCAGATAGTTCTGTCTCAT+TGG | 0.339177 | 1_1:+13576086 | Msa0009300:intron |
| CGGTGGGAGGGAGGCAATCT+TGG | 0.352530 | 1_1:+13575841 | Msa0009300:CDS |
| AAGCCTTTGCATTATCAGTA+TGG | 0.353852 | 1_1:+13578830 | Msa0009300:CDS |
| TGCTCTTTGAGATGTGATTA+GGG | 0.361432 | 1_1:-13582106 | None:intergenic |
| GTACCAAAACATGGAACAAA+TGG | 0.366712 | 1_1:+13584510 | Msa0009300:CDS |
| GGGAACGGGAGAGGAAGAAG+GGG | 0.367269 | 1_1:+13575777 | Msa0009300:CDS |
| TTTCCACCATCTCAGCATAT+TGG | 0.372188 | 1_1:+13579567 | Msa0009300:CDS |
| CATTGGTTCTTCTTCATTGA+AGG | 0.373666 | 1_1:+13576103 | Msa0009300:CDS |
| CACTCTGTTGTAATTCTTGG+AGG | 0.387839 | 1_1:+13580658 | Msa0009300:CDS |
| AGATTTACAAATGTAAAATA+AGG | 0.388657 | 1_1:+13582180 | Msa0009300:CDS |
| GTTCAGGTTGAAAAGAAGAA+TGG | 0.414773 | 1_1:+13580326 | Msa0009300:CDS |
| ATGCCCTTAATGAGGGCAAA+AGG | 0.421760 | 1_1:-13575676 | None:intergenic |
| TATGAGTGGGTTGTGTTATG+AGG | 0.422892 | 1_1:+13579245 | Msa0009300:CDS |
| GTTTGTTCACCTGAAAGAAC+TGG | 0.424292 | 1_1:+13583986 | Msa0009300:CDS |
| AAGGGCCACACCATACTCTT+TGG | 0.424346 | 1_1:-13580258 | None:intergenic |
| TGCTCAACCCACATCTTTGT+TGG | 0.429124 | 1_1:-13582314 | None:intergenic |
| AGTAAACTCTGCCACTGAAA+TGG | 0.431444 | 1_1:-13578987 | None:intergenic |
| AGAGGGAGTACCGCCGGCGG+TGG | 0.436826 | 1_1:+13575824 | Msa0009300:CDS |
| GGGACGAGAGAAACGGGAAC+GGG | 0.438145 | 1_1:+13575763 | Msa0009300:CDS |
| ACGGGAACGGGAGAGGAAGA+AGG | 0.445089 | 1_1:+13575775 | Msa0009300:CDS |
| CGGGAACGGGAGAGGAAGAA+GGG | 0.445194 | 1_1:+13575776 | Msa0009300:CDS |
| TTCAGGTTGAAAAGAAGAAT+GGG | 0.447829 | 1_1:+13580327 | Msa0009300:CDS |
| ACAACGGTGACGTTTCGCTT+CGG | 0.463663 | 1_1:-13580305 | None:intergenic |
| GGAACGGGAGAGGAAGAAGG+GGG | 0.463851 | 1_1:+13575778 | Msa0009300:CDS |
| GCATAAATTTGTCATCGATA+GGG | 0.464515 | 1_1:+13582247 | Msa0009300:CDS |
| AAGACAAAATGATATAAATC+AGG | 0.467129 | 1_1:+13584073 | Msa0009300:CDS |
| ACCTGATGAAATCCTCACTT+TGG | 0.468216 | 1_1:+13577693 | Msa0009300:CDS |
| TCCAAAGTGAGGATTTCATC+AGG | 0.470978 | 1_1:-13577694 | None:intergenic |
| CCTTGCCTATATATATGAAA+AGG | 0.476359 | 1_1:+13575724 | Msa0009300:CDS |
| GATGGAAAGAAGAAAGAAGA+AGG | 0.478926 | 1_1:+13576545 | Msa0009300:CDS |
| GAGAGAAACGGGAACGGGAG+AGG | 0.478946 | 1_1:+13575768 | Msa0009300:CDS |
| TGAGGGCAACTTACATATCC+AGG | 0.488191 | 1_1:+13579263 | Msa0009300:CDS |
| GAACGGGAGAGGAAGAAGGG+GGG | 0.490772 | 1_1:+13575779 | Msa0009300:CDS |
| TTCTCAGTAGCTGCCAACTT+CGG | 0.494557 | 1_1:-13578808 | None:intergenic |
| CATAAATTTGTCATCGATAG+GGG | 0.499486 | 1_1:+13582248 | Msa0009300:CDS |
| GAGTACCGCCGGCGGTGGGA+GGG | 0.501926 | 1_1:+13575829 | Msa0009300:CDS |
| TACCAAAACATGGAACAAAT+GGG | 0.506635 | 1_1:+13584511 | Msa0009300:CDS |
| AGAGAGAGAGGGAGTACCGC+CGG | 0.507433 | 1_1:+13575818 | Msa0009300:CDS |
| TCAACCCACATCTTTGTTGG+TGG | 0.509713 | 1_1:-13582311 | None:intergenic |
| GATTGCCTCCCTCCCACCGC+CGG | 0.509886 | 1_1:-13575837 | None:intergenic |
| TAACTTCGGTAAAATTTCAA+AGG | 0.510604 | 1_1:+13579121 | Msa0009300:CDS |
| TGCCCTTAATGAGGGCAAAA+GGG | 0.512163 | 1_1:-13575675 | None:intergenic |
| AAATAAGGACTGCCGGAAGA+AGG | 0.512766 | 1_1:+13582195 | Msa0009300:CDS |
| ATGGAAAGAAGAAAGAAGAA+GGG | 0.513218 | 1_1:+13576546 | Msa0009300:CDS |
| GGGGATACATTGTTGAAAGC+TGG | 0.517141 | 1_1:+13576566 | Msa0009300:CDS |
| TAAGAGAAGATTGATGCAGA+TGG | 0.518484 | 1_1:+13576527 | Msa0009300:intron |
| GACAATTTCAGGATATGTTG+AGG | 0.519087 | 1_1:+13577636 | Msa0009300:intron |
| ATCAGTATGGACAACATCAA+TGG | 0.523506 | 1_1:+13578843 | Msa0009300:CDS |
| TACCGCCGGCGGTGGGAGGG+AGG | 0.524472 | 1_1:+13575832 | Msa0009300:CDS |
| TGACGAAAATGCCCTTAATG+AGG | 0.527104 | 1_1:-13575684 | None:intergenic |
| AATAAGAAAATCAATGTCCA+TGG | 0.527538 | 1_1:+13575646 | None:intergenic |
| GAGTCATTGTATTGTTCTTG+AGG | 0.529959 | 1_1:-13580691 | None:intergenic |
| GCAACATTACGTAGTCGTCA+AGG | 0.536559 | 1_1:-13580277 | None:intergenic |
| GTGGCAGAGTTTACTACTCC+CGG | 0.540985 | 1_1:+13578995 | Msa0009300:CDS |
| GGGGACGAGAGAAACGGGAA+CGG | 0.541738 | 1_1:+13575762 | Msa0009300:CDS |
| CTCTTCCAAAGGTGATAGCA+TGG | 0.542728 | 1_1:+13580711 | Msa0009300:CDS |
| AAATGTAAAATAAGGACTGC+CGG | 0.544196 | 1_1:+13582188 | Msa0009300:CDS |
| GGAGTACCGCCGGCGGTGGG+AGG | 0.551550 | 1_1:+13575828 | Msa0009300:CDS |
| GGGCAAAAGGGTAATTTCCA+TGG | 0.558007 | 1_1:-13575663 | None:intergenic |
| TCATCACCAATATGCTGAGA+TGG | 0.559689 | 1_1:-13579573 | None:intergenic |
| GAACTCTCCGCGTATGAAGT+CGG | 0.562568 | 1_1:-13580615 | None:intergenic |
| TGATCAGTACTACTTGCAGC+TGG | 0.564167 | 1_1:-13580637 | None:intergenic |
| GAAAGGGTTGGCTTTCTCTG+AGG | 0.565307 | 1_1:+13577744 | Msa0009300:CDS |
| GACGAAAATGCCCTTAATGA+GGG | 0.565748 | 1_1:-13575683 | None:intergenic |
| GAGGGAGTACCGCCGGCGGT+GGG | 0.570339 | 1_1:+13575825 | Msa0009300:CDS |
| TGGAAAGAAGAAAGAAGAAG+GGG | 0.574029 | 1_1:+13576547 | Msa0009300:CDS |
| TGCCTCCCTCCCACCGCCGG+CGG | 0.574554 | 1_1:-13575834 | None:intergenic |
| GGCATAAATTTGTCATCGAT+AGG | 0.574696 | 1_1:+13582246 | Msa0009300:CDS |
| ATGAGTGGGTTGTGTTATGA+GGG | 0.574980 | 1_1:+13579246 | Msa0009300:CDS |
| AAAAGTCTATATGTGGTGAA+TGG | 0.576156 | 1_1:+13582225 | Msa0009300:CDS |
| TTTGGCACTCAAGCTCGCAA+TGG | 0.587648 | 1_1:+13584615 | Msa0009300:CDS |
| TAATTTGCTAGGACAAGGCA+AGG | 0.597697 | 1_1:+13580219 | Msa0009300:intron |
| TCACCAATATGCTGAGATGG+TGG | 0.601205 | 1_1:-13579570 | None:intergenic |
| AGGTTGCGAGATTATATGAG+TGG | 0.605845 | 1_1:+13579231 | Msa0009300:intron |
| CAACATTACGTAGTCGTCAA+GGG | 0.608285 | 1_1:-13580276 | None:intergenic |
| TGCAGGAATGTACCAAAACA+TGG | 0.608408 | 1_1:+13584501 | Msa0009300:intron |
| CTTTGGACAATGCTGATCGT+CGG | 0.610336 | 1_1:+13577710 | Msa0009300:CDS |
| AGAATCCACCAACAAAGATG+TGG | 0.613604 | 1_1:+13582306 | Msa0009300:CDS |
| TGTTGATTCGTCCATTTCAG+TGG | 0.613839 | 1_1:+13578976 | Msa0009300:CDS |
| TACTCTTTGGCAAAACACGT+TGG | 0.617335 | 1_1:-13580245 | None:intergenic |
| AAAAGCATTCAAGCTCGCAA+TGG | 0.630674 | 1_1:+13584546 | Msa0009300:CDS |
| AATGCTGAAAAGTCTATATG+TGG | 0.632612 | 1_1:+13582218 | Msa0009300:CDS |
| GAATCCACCAACAAAGATGT+GGG | 0.636643 | 1_1:+13582307 | Msa0009300:CDS |
| TTTGATGTAGATCATGTGAA+AGG | 0.637952 | 1_1:+13584035 | Msa0009300:CDS |
| CAATACAATGACTCTTCCAA+AGG | 0.638042 | 1_1:+13580700 | Msa0009300:CDS |
| CGAGCAAGAAGAACTCGCAA+TGG | 0.640894 | 1_1:+13584569 | Msa0009300:CDS |
| TGTCCATACTGATAATGCAA+AGG | 0.651820 | 1_1:-13578833 | None:intergenic |
| AGAAATACCGACTTCATACG+CGG | 0.668200 | 1_1:+13580608 | Msa0009300:intron |
| GATCAGCATTGTCCAAAGTG+AGG | 0.674747 | 1_1:-13577705 | None:intergenic |
| GAGAGAGGGAGTACCGCCGG+CGG | 0.677946 | 1_1:+13575821 | Msa0009300:CDS |
| GGTTGCGAGATTATATGAGT+GGG | 0.681349 | 1_1:+13579232 | Msa0009300:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGGAAAAAAAAAAAAAA+GGG | + | chr1_1:13575741-13575760 | Msa0009300:CDS | 10.0% |
| !! | AATTGATGTAAAAAATAAAT+GGG | + | chr1_1:13576694-13576713 | Msa0009300:intron | 10.0% |
| !!! | AATCTATATCTATTTTATTT+TGG | + | chr1_1:13581898-13581917 | Msa0009300:intron | 10.0% |
| !!! | CTAAAAAATTAATTTTTAGT+TGG | - | chr1_1:13582686-13582705 | None:intergenic | 10.0% |
| !!! | AATTAATTTTTTAGATTATG+TGG | + | chr1_1:13582692-13582711 | Msa0009300:intron | 10.0% |
| !!! | AAAAAAAAAACTTGTTTTAA+AGG | - | chr1_1:13583082-13583101 | None:intergenic | 10.0% |
| !! | TAATTTAGCTAATTTATTAT+CGG | - | chr1_1:13583558-13583577 | None:intergenic | 10.0% |
| !!! | TTTAAAAAAACTTGTTTTAA+AGG | - | chr1_1:13583809-13583828 | None:intergenic | 10.0% |
| !!! | TTTTTCCTTTTCATATATAT+AGG | - | chr1_1:13575732-13575751 | None:intergenic | 15.0% |
| !! | GAAAAGGAAAAAAAAAAAAA+AGG | + | chr1_1:13575740-13575759 | Msa0009300:CDS | 15.0% |
| !! | AAAGGAAAAAAAAAAAAAAG+GGG | + | chr1_1:13575742-13575761 | Msa0009300:CDS | 15.0% |
| !!! | TGTTTAATTTACTGTTATTT+TGG | + | chr1_1:13576055-13576074 | Msa0009300:intron | 15.0% |
| !!! | AAGTTGTTCTTATTATTTTA+AGG | + | chr1_1:13576495-13576514 | Msa0009300:intron | 15.0% |
| !!! | AGTTGTTCTTATTATTTTAA+GGG | + | chr1_1:13576496-13576515 | Msa0009300:intron | 15.0% |
| !! | GAATTGATGTAAAAAATAAA+TGG | + | chr1_1:13576693-13576712 | Msa0009300:intron | 15.0% |
| !! | AATTTAATTGTTTCAAATTC+TGG | + | chr1_1:13578345-13578364 | Msa0009300:intron | 15.0% |
| !!! | TTTTTAAAGAATAAGTTACT+TGG | + | chr1_1:13578467-13578486 | Msa0009300:intron | 15.0% |
| !! | TATATATTAAAACTTAAGTG+AGG | - | chr1_1:13578551-13578570 | None:intergenic | 15.0% |
| !!! | AATAAAAGAAGACTATTTTT+AGG | - | chr1_1:13579479-13579498 | None:intergenic | 15.0% |
| !! | ATGTGAAAATATACAAAAAT+TGG | - | chr1_1:13579518-13579537 | None:intergenic | 15.0% |
| !! | AAAAACAAAGTTATAATGTA+AGG | - | chr1_1:13580361-13580380 | None:intergenic | 15.0% |
| !!! | AACACAAAAAATCTTTTAAT+TGG | + | chr1_1:13581154-13581173 | Msa0009300:intron | 15.0% |
| !!! | ATAGATATAGATTTTTAAGA+CGG | - | chr1_1:13581891-13581910 | None:intergenic | 15.0% |
| !! | AGATTTACAAATGTAAAATA+AGG | + | chr1_1:13582180-13582199 | Msa0009300:CDS | 15.0% |
| !!! | ATAGCAATATTTTGTTATTT+CGG | + | chr1_1:13582423-13582442 | Msa0009300:intron | 15.0% |
| !! | TTTGGGAAAAAATATTATAT+TGG | - | chr1_1:13582588-13582607 | None:intergenic | 15.0% |
| !!! | AAAGTTTTAGGAATAATATT+CGG | - | chr1_1:13582624-13582643 | None:intergenic | 15.0% |
| !! | AAAAATCTCTTAAAAAAATG+CGG | + | chr1_1:13582895-13582914 | Msa0009300:intron | 15.0% |
| !! | TTGTAAAAAAATTGTTCTAA+AGG | - | chr1_1:13582947-13582966 | None:intergenic | 15.0% |
| !! | AATTTAGCTAATTTATTATC+GGG | - | chr1_1:13583557-13583576 | None:intergenic | 15.0% |
| !! | AAGGAAAAAAAAAAAAAAGG+GGG | + | chr1_1:13575743-13575762 | Msa0009300:CDS | 20.0% |
| !! | ATTAGATTGATGAAATTTGA+TGG | - | chr1_1:13575950-13575969 | None:intergenic | 20.0% |
| !! | AAAAAAAAAATTCAGTCAGA+CGG | + | chr1_1:13576238-13576257 | Msa0009300:intron | 20.0% |
| !!! | TTTTTATTCAACATTGATTC+TGG | + | chr1_1:13576457-13576476 | Msa0009300:intron | 20.0% |
| !!! | ATGTAAAAAATAAATGGGTT+GGG | + | chr1_1:13576699-13576718 | Msa0009300:intron | 20.0% |
| !! | TGGTTATTTGTTCTTTATAT+TGG | + | chr1_1:13576959-13576978 | Msa0009300:intron | 20.0% |
| !! | ATTATATCTGGAAATTCAAA+CGG | - | chr1_1:13577449-13577468 | None:intergenic | 20.0% |
| !! | AGAAATAAAATATGAAAGCT+TGG | - | chr1_1:13577796-13577815 | None:intergenic | 20.0% |
| !! | TTTCTCTCATATATAGTTAT+AGG | - | chr1_1:13577827-13577846 | None:intergenic | 20.0% |
| !!! | TAATCTGTAATTTTGATTCA+AGG | + | chr1_1:13577909-13577928 | Msa0009300:intron | 20.0% |
| !!! | AATCTGTAATTTTGATTCAA+GGG | + | chr1_1:13577910-13577929 | Msa0009300:intron | 20.0% |
| !!! | AATGATTGATTTTCTAACTT+CGG | + | chr1_1:13579107-13579126 | Msa0009300:CDS | 20.0% |
| !! | AAAAATGATGTAAAGAAATC+AGG | - | chr1_1:13579209-13579228 | None:intergenic | 20.0% |
| !!! | TGCCTCTTTAATTATTTTAA+TGG | + | chr1_1:13579350-13579369 | Msa0009300:intron | 20.0% |
| !! | CACCATTAAAATAATTAAAG+AGG | - | chr1_1:13579355-13579374 | None:intergenic | 20.0% |
| !!! | ATGAAATATATGGATTACTT+AGG | - | chr1_1:13579916-13579935 | None:intergenic | 20.0% |
| !!! | TTTTGATAAATTTAAACCGA+TGG | - | chr1_1:13580054-13580073 | None:intergenic | 20.0% |
| !! | GGTTTAAATTTATCAAAAGT+TGG | + | chr1_1:13580056-13580075 | Msa0009300:intron | 20.0% |
| !!! | GTTTATCTTTTGTATTTTCA+AGG | + | chr1_1:13580415-13580434 | Msa0009300:intron | 20.0% |
| !! | AAGGAAAATATTGATAAGTA+AGG | + | chr1_1:13580505-13580524 | Msa0009300:intron | 20.0% |
| !! | GTCAAAATTTACATATTTCT+TGG | - | chr1_1:13580806-13580825 | None:intergenic | 20.0% |
| !! | CATTACATTATATTCATGTA+AGG | + | chr1_1:13580835-13580854 | Msa0009300:intron | 20.0% |
| !! | ATCAAACATTACAAATCAAA+GGG | - | chr1_1:13580870-13580889 | None:intergenic | 20.0% |
| !! | AATCAAACATTACAAATCAA+AGG | - | chr1_1:13580871-13580890 | None:intergenic | 20.0% |
| !!! | ATCTTAAGATTGTTGAATTT+TGG | + | chr1_1:13581730-13581749 | Msa0009300:intron | 20.0% |
| !!! | TGAGAACAAATTCATTATTT+TGG | + | chr1_1:13581804-13581823 | Msa0009300:intron | 20.0% |
| !!! | TAGATATAGATTTTTAAGAC+GGG | - | chr1_1:13581890-13581909 | None:intergenic | 20.0% |
| !!! | GATTTCATACTTTTAGTATT+TGG | + | chr1_1:13581926-13581945 | Msa0009300:intron | 20.0% |
| !!! | ATCTATTTCTGAATTCAATT+GGG | + | chr1_1:13581962-13581981 | Msa0009300:intron | 20.0% |
| !!! | TAGACAATTTTATGTTAACA+TGG | + | chr1_1:13582469-13582488 | Msa0009300:intron | 20.0% |
| !! | GGAAAAAATATTATATTGGA+TGG | - | chr1_1:13582584-13582603 | None:intergenic | 20.0% |
| !!! | AAGTTTTAGGAATAATATTC+GGG | - | chr1_1:13582623-13582642 | None:intergenic | 20.0% |
| !!! | CGTTAAAATTTTCTTCAATA+AGG | - | chr1_1:13583625-13583644 | None:intergenic | 20.0% |
| !! | AAAAATGAGTAAATTAAGGT+AGG | - | chr1_1:13583652-13583671 | None:intergenic | 20.0% |
| !! | AAGGAAAAATGAGTAAATTA+AGG | - | chr1_1:13583656-13583675 | None:intergenic | 20.0% |
| !! | TTTGTAAAAAACTGTTCTAA+AGG | - | chr1_1:13583675-13583694 | None:intergenic | 20.0% |
| !! | AAGACAAAATGATATAAATC+AGG | + | chr1_1:13584073-13584092 | Msa0009300:CDS | 20.0% |
| !! | AATGATATAAATCAGGTAAT+AGG | + | chr1_1:13584080-13584099 | Msa0009300:intron | 20.0% |
| !! | ATGATATAAATCAGGTAATA+GGG | + | chr1_1:13584081-13584100 | Msa0009300:intron | 20.0% |
| !!! | TTTTTCGGCAAATATTATAT+TGG | - | chr1_1:13584330-13584349 | None:intergenic | 20.0% |
| !! | CATTTTCGTCAATTAGTAAA+TGG | + | chr1_1:13575696-13575715 | Msa0009300:CDS | 25.0% |
| !! | TTTTCATATATATAGGCAAG+GGG | - | chr1_1:13575725-13575744 | None:intergenic | 25.0% |
| !! | CTTTTCATATATATAGGCAA+GGG | - | chr1_1:13575726-13575745 | None:intergenic | 25.0% |
| !!! | ATTTTAAGGGTTTGATTTTG+TGG | + | chr1_1:13576007-13576026 | Msa0009300:intron | 25.0% |
| !!! | TTTTAAGGGTTTGATTTTGT+GGG | + | chr1_1:13576008-13576027 | Msa0009300:intron | 25.0% |
| !! | TTTTAGATTCATCAGAGATA+AGG | - | chr1_1:13576135-13576154 | None:intergenic | 25.0% |
| !! | CACAAATTGATTTCAATAAC+AGG | - | chr1_1:13576355-13576374 | None:intergenic | 25.0% |
| ! | GATGTAAAAAATAAATGGGT+TGG | + | chr1_1:13576698-13576717 | Msa0009300:intron | 25.0% |
| !!! | TGAATTGATGTTTTAGTGTT+TGG | + | chr1_1:13576850-13576869 | Msa0009300:intron | 25.0% |
| !!! | GAATTGATGTTTTAGTGTTT+GGG | + | chr1_1:13576851-13576870 | Msa0009300:intron | 25.0% |
| ! | TCAGATGCCAAAATTAAATA+CGG | - | chr1_1:13577004-13577023 | None:intergenic | 25.0% |
| !! | GAAATATAAGACATTTTGTG+CGG | + | chr1_1:13577228-13577247 | Msa0009300:intron | 25.0% |
| !! | GTGAAAATTTTCAATATGCA+AGG | + | chr1_1:13577286-13577305 | Msa0009300:intron | 25.0% |
| !!! | ATTTTCTTCTCATACTGATT+TGG | - | chr1_1:13577984-13578003 | None:intergenic | 25.0% |
| ! | AGTATGAGAAGAAAATGATA+TGG | + | chr1_1:13577988-13578007 | Msa0009300:intron | 25.0% |
| ! | ACTATGATGTACTAATTAGT+TGG | - | chr1_1:13578017-13578036 | None:intergenic | 25.0% |
| !!! | TCATTTGTTGATTCAAATTC+TGG | + | chr1_1:13578295-13578314 | Msa0009300:intron | 25.0% |
| !!! | AAGTTACTTGGTTTTCATTT+TGG | + | chr1_1:13578479-13578498 | Msa0009300:intron | 25.0% |
| !! | TGTACTTTATTTCATGTTCT+TGG | + | chr1_1:13578520-13578539 | Msa0009300:intron | 25.0% |
| !! | GTACTTTATTTCATGTTCTT+GGG | + | chr1_1:13578521-13578540 | Msa0009300:intron | 25.0% |
| ! | ATAAAAATTCATGTTCAGTG+AGG | + | chr1_1:13578568-13578587 | Msa0009300:intron | 25.0% |
| !! | TAACTTGTAAATCTTCAAGA+GGG | - | chr1_1:13578627-13578646 | None:intergenic | 25.0% |
| !! | ATAACTTGTAAATCTTCAAG+AGG | - | chr1_1:13578628-13578647 | None:intergenic | 25.0% |
| !! | GTAAAGAAAGCACATATTTA+TGG | - | chr1_1:13578758-13578777 | None:intergenic | 25.0% |
| !!! | AGAAAATCAATCATTTTTGC+AGG | - | chr1_1:13579102-13579121 | None:intergenic | 25.0% |
| ! | TAACTTCGGTAAAATTTCAA+AGG | + | chr1_1:13579121-13579140 | Msa0009300:CDS | 25.0% |
| ! | GATATTTATGAGTTTAGATG+TGG | + | chr1_1:13579145-13579164 | Msa0009300:intron | 25.0% |
| ! | TAAAGAAATCAGGAAAATGA+AGG | - | chr1_1:13579199-13579218 | None:intergenic | 25.0% |
| !!! | TTTCTTTACATCATTTTTGC+AGG | + | chr1_1:13579211-13579230 | Msa0009300:intron | 25.0% |
| ! | AAAAATAATAGAAGCTAACC+TGG | - | chr1_1:13579284-13579303 | None:intergenic | 25.0% |
| !!! | GGTTAGCTTCTATTATTTTT+TGG | + | chr1_1:13579284-13579303 | Msa0009300:intron | 25.0% |
| ! | ATGTTAGATAAAAAGGATTG+AGG | - | chr1_1:13579694-13579713 | None:intergenic | 25.0% |
| !! | AATCCTTTTTATCTAACATC+AGG | + | chr1_1:13579695-13579714 | Msa0009300:intron | 25.0% |
| ! | AAACCTGATGTTAGATAAAA+AGG | - | chr1_1:13579701-13579720 | None:intergenic | 25.0% |
| ! | TTTATCTAACATCAGGTTTA+TGG | + | chr1_1:13579702-13579721 | Msa0009300:intron | 25.0% |
| !!! | TTTCTTTTTAGTATGCTCTA+GGG | + | chr1_1:13579973-13579992 | Msa0009300:intron | 25.0% |
| ! | AAAGCTATGAAACTGTTATA+AGG | - | chr1_1:13580082-13580101 | None:intergenic | 25.0% |
| ! | TTAGCAGTGAAAATATAGTT+TGG | - | chr1_1:13580171-13580190 | None:intergenic | 25.0% |
| !!! | ACATTATTTGCTAATTTGCT+AGG | + | chr1_1:13580208-13580227 | Msa0009300:intron | 25.0% |
| ! | AATAAGAGAAACTGTGAAAT+TGG | - | chr1_1:13580482-13580501 | None:intergenic | 25.0% |
| !! | ATGAATTTTACATCATGCTT+TGG | + | chr1_1:13580537-13580556 | Msa0009300:intron | 25.0% |
| !!! | ATGTAAATTTTGACGTCAAA+TGG | + | chr1_1:13580812-13580831 | Msa0009300:intron | 25.0% |
| ! | GTAATGTTTGATTGTATTCT+AGG | + | chr1_1:13580878-13580897 | Msa0009300:intron | 25.0% |
| ! | CTAATAAACAACAATTGAAG+TGG | - | chr1_1:13580996-13581015 | None:intergenic | 25.0% |
| ! | ATCACATATAATCACAACTT+TGG | + | chr1_1:13581097-13581116 | Msa0009300:intron | 25.0% |
| !!! | TATAATCACAACTTTGGAAT+AGG | + | chr1_1:13581103-13581122 | Msa0009300:intron | 25.0% |
| ! | GTTGAGAAAAACCTATTAAA+AGG | - | chr1_1:13581137-13581156 | None:intergenic | 25.0% |
| ! | TAAAATTGACACATGAAACT+TGG | + | chr1_1:13581463-13581482 | Msa0009300:intron | 25.0% |
| ! | GCATACTGTTCATATAATAT+TGG | + | chr1_1:13581485-13581504 | Msa0009300:intron | 25.0% |
| ! | AGAGATTGAAACAAATTAAG+TGG | - | chr1_1:13581629-13581648 | None:intergenic | 25.0% |
| ! | ATTCAACAATCTTAAGATAC+AGG | - | chr1_1:13581728-13581747 | None:intergenic | 25.0% |
| !!! | TTATTTTGGTGATTGAGTTT+TGG | + | chr1_1:13581818-13581837 | Msa0009300:intron | 25.0% |
| !!! | TATTTTGGTGATTGAGTTTT+GGG | + | chr1_1:13581819-13581838 | Msa0009300:intron | 25.0% |
| !! | TTAGTATTTGGAATAATTGC+TGG | + | chr1_1:13581938-13581957 | Msa0009300:intron | 25.0% |
| !!! | CATCTATTTCTGAATTCAAT+TGG | + | chr1_1:13581961-13581980 | Msa0009300:intron | 25.0% |
| ! | CATATTCTCATAGTTAGAAT+AGG | + | chr1_1:13582015-13582034 | Msa0009300:intron | 25.0% |
| !!! | TGACAAATTGATTTTTGACT+TGG | + | chr1_1:13582283-13582302 | Msa0009300:CDS | 25.0% |
| !!! | ATTTACAAAAAACTTGCTAG+TGG | - | chr1_1:13582349-13582368 | None:intergenic | 25.0% |
| ! | AGCTAAAACAACTTCATAAT+CGG | - | chr1_1:13582380-13582399 | None:intergenic | 25.0% |
| !! | CATTAAAGGATGAAAGTTTT+AGG | - | chr1_1:13582636-13582655 | None:intergenic | 25.0% |
| ! | CTAAAACTTTCATCCTTTAA+TGG | + | chr1_1:13582634-13582653 | Msa0009300:intron | 25.0% |
| !! | TATGCTCTTTTCATGAATTA+AGG | + | chr1_1:13582782-13582801 | Msa0009300:intron | 25.0% |
| ! | AGGAAGAATGAGTAAATTAA+GGG | - | chr1_1:13582927-13582946 | None:intergenic | 25.0% |
| ! | AAGGAAGAATGAGTAAATTA+AGG | - | chr1_1:13582928-13582947 | None:intergenic | 25.0% |
| ! | GTTCTCAAATTTATGAAGAA+TGG | + | chr1_1:13583030-13583049 | Msa0009300:intron | 25.0% |
| ! | TTATATACGTTGAAACTGAA+AGG | + | chr1_1:13583185-13583204 | Msa0009300:intron | 25.0% |
| ! | AAGGCAAAATGATATAAATC+AGG | + | chr1_1:13583204-13583223 | Msa0009300:intron | 25.0% |
| !! | ATTTAGTATCCAGTTATTTC+AGG | - | chr1_1:13583273-13583292 | None:intergenic | 25.0% |
| ! | TGTGAAAGGATTTATATAAG+TGG | + | chr1_1:13583328-13583347 | Msa0009300:intron | 25.0% |
| ! | TTTGACTACCCATTATTATA+TGG | + | chr1_1:13583486-13583505 | Msa0009300:intron | 25.0% |
| ! | GTATGTGTCCATATAATAAT+GGG | - | chr1_1:13583497-13583516 | None:intergenic | 25.0% |
| ! | TGTATGTGTCCATATAATAA+TGG | - | chr1_1:13583498-13583517 | None:intergenic | 25.0% |
| ! | TTATTATATGGACACATACA+CGG | + | chr1_1:13583498-13583517 | Msa0009300:intron | 25.0% |
| ! | GTTCTCAAATTTACAAAGAA+TGG | + | chr1_1:13583757-13583776 | Msa0009300:intron | 25.0% |
| ! | ACGACAAAATGATATAAATC+AGG | + | chr1_1:13583929-13583948 | Msa0009300:intron | 25.0% |
| !!! | TATCAGTTAGCTACTTTTTT+CGG | - | chr1_1:13584345-13584364 | None:intergenic | 25.0% |
| !!! | CTTGTTTTGCAAGTAATTAA+AGG | + | chr1_1:13584414-13584433 | Msa0009300:intron | 25.0% |
| ! | TGATACTTAAAGCGTAAAAT+AGG | - | chr1_1:13584466-13584485 | None:intergenic | 25.0% |
| ! | CCTTTTCATATATATAGGCA+AGG | - | chr1_1:13575727-13575746 | None:intergenic | 30.0% |
| CCTTGCCTATATATATGAAA+AGG | + | chr1_1:13575724-13575743 | Msa0009300:CDS | 30.0% | |
| TTTCTGTTCTATTCTTGCTT+TGG | + | chr1_1:13576180-13576199 | Msa0009300:intron | 30.0% | |
| GATATGAGATTGCATGTTAA+AGG | + | chr1_1:13576202-13576221 | Msa0009300:intron | 30.0% | |
| ! | ATGATTTCTTCCCCATTTTA+TGG | + | chr1_1:13576328-13576347 | Msa0009300:intron | 30.0% |
| AATAACAGGACCATAAAATG+GGG | - | chr1_1:13576341-13576360 | None:intergenic | 30.0% | |
| CAATAACAGGACCATAAAAT+GGG | - | chr1_1:13576342-13576361 | None:intergenic | 30.0% | |
| TCAATAACAGGACCATAAAA+TGG | - | chr1_1:13576343-13576362 | None:intergenic | 30.0% | |
| ATGGAAAGAAGAAAGAAGAA+GGG | + | chr1_1:13576546-13576565 | Msa0009300:CDS | 30.0% | |
| TCTAATCCAGAACTTGTAAA+GGG | - | chr1_1:13577158-13577177 | None:intergenic | 30.0% | |
| TTCTAATCCAGAACTTGTAA+AGG | - | chr1_1:13577159-13577178 | None:intergenic | 30.0% | |
| !! | TTTACAAGTTCTGGATTAGA+AGG | + | chr1_1:13577158-13577177 | Msa0009300:intron | 30.0% |
| GATTAGAAGGATATCTCTAA+TGG | + | chr1_1:13577171-13577190 | Msa0009300:intron | 30.0% | |
| ! | GAAGTGCTATATATGAAACT+TGG | + | chr1_1:13577206-13577225 | Msa0009300:intron | 30.0% |
| TGATGTACTAATTATGCATC+AGG | + | chr1_1:13577319-13577338 | Msa0009300:intron | 30.0% | |
| CTTAAGCGCTTAATTATATC+TGG | - | chr1_1:13577461-13577480 | None:intergenic | 30.0% | |
| TGAAGCAAAGTTACAGAAAA+AGG | - | chr1_1:13577554-13577573 | None:intergenic | 30.0% | |
| TGTGTGAATTTGACAATTTC+AGG | + | chr1_1:13577625-13577644 | Msa0009300:intron | 30.0% | |
| ACAGATTATGATGCTAAGTA+GGG | - | chr1_1:13577897-13577916 | None:intergenic | 30.0% | |
| TACAGATTATGATGCTAAGT+AGG | - | chr1_1:13577898-13577917 | None:intergenic | 30.0% | |
| !! | ATTTTAGTGACTGTCAACTA+TGG | + | chr1_1:13578158-13578177 | Msa0009300:intron | 30.0% |
| ACGCTGTTAAAATTGTTGAA+GGG | - | chr1_1:13578413-13578432 | None:intergenic | 30.0% | |
| TGGAACATAAAGTCAGAATT+TGG | - | chr1_1:13578604-13578623 | None:intergenic | 30.0% | |
| ! | TGACATTCAATTGATTCTCT+TGG | + | chr1_1:13578658-13578677 | Msa0009300:intron | 30.0% |
| !!! | ATGGTCATTTTTTGTTGATG+TGG | + | chr1_1:13578862-13578881 | Msa0009300:intron | 30.0% |
| !! | GATTAGTTCTGATTGCTTTA+GGG | + | chr1_1:13578884-13578903 | Msa0009300:intron | 30.0% |
| !! | TCTGGTTTGAGATTTTTCTT+GGG | + | chr1_1:13579040-13579059 | Msa0009300:intron | 30.0% |
| ! | AAGTCTACCAATATCTTTTC+AGG | + | chr1_1:13579071-13579090 | Msa0009300:intron | 30.0% |
| GTTTCTTTGTAGATGATCTT+AGG | + | chr1_1:13579325-13579344 | Msa0009300:intron | 30.0% | |
| AAGAACCAGCATATTGTAAA+CGG | - | chr1_1:13579419-13579438 | None:intergenic | 30.0% | |
| !! | TGATATTGCTTTTGTTGGAA+AGG | + | chr1_1:13579593-13579612 | Msa0009300:CDS | 30.0% |
| CTGGAATTTGAAGACATATA+TGG | + | chr1_1:13579620-13579639 | Msa0009300:CDS | 30.0% | |
| ATGTGTGTCATATATGTGTT+TGG | + | chr1_1:13579830-13579849 | Msa0009300:intron | 30.0% | |
| ACACGCATATATAAACAAAG+TGG | - | chr1_1:13579877-13579896 | None:intergenic | 30.0% | |
| AATCCATATATTTCATCCAG+TGG | + | chr1_1:13579920-13579939 | Msa0009300:intron | 30.0% | |
| !! | GTTTCTTTTTAGTATGCTCT+AGG | + | chr1_1:13579972-13579991 | Msa0009300:intron | 30.0% |
| ATGAGCAATGAGTGATAAAT+TGG | - | chr1_1:13580135-13580154 | None:intergenic | 30.0% | |
| !! | TTCAGGTTGAAAAGAAGAAT+GGG | + | chr1_1:13580327-13580346 | Msa0009300:CDS | 30.0% |
| TTGTAATTCTTGGAGGTTTA+TGG | + | chr1_1:13580665-13580684 | Msa0009300:CDS | 30.0% | |
| ! | GTATTCTAGGAGAATTTGAT+TGG | + | chr1_1:13580891-13580910 | Msa0009300:intron | 30.0% |
| !! | TTGGCGTTTAGTTCTATAAA+TGG | + | chr1_1:13580958-13580977 | Msa0009300:intron | 30.0% |
| AACTCAATGATTGTTGAGAA+GGG | - | chr1_1:13581039-13581058 | None:intergenic | 30.0% | |
| ! | AGGCTTACTAACCTTTTAAT+AGG | + | chr1_1:13581123-13581142 | Msa0009300:intron | 30.0% |
| ! | ATCTAAAACCTTAAGACGAT+GGG | - | chr1_1:13581275-13581294 | None:intergenic | 30.0% |
| ! | TATCTAAAACCTTAAGACGA+TGG | - | chr1_1:13581276-13581295 | None:intergenic | 30.0% |
| GGTTAGCAAATCAAGTTATA+GGG | + | chr1_1:13581593-13581612 | Msa0009300:intron | 30.0% | |
| GGATATAAGTCTAGTTATCT+TGG | - | chr1_1:13581707-13581726 | None:intergenic | 30.0% | |
| AAATGTAAAATAAGGACTGC+CGG | + | chr1_1:13582188-13582207 | Msa0009300:CDS | 30.0% | |
| AATGCTGAAAAGTCTATATG+TGG | + | chr1_1:13582218-13582237 | Msa0009300:CDS | 30.0% | |
| AAAAGTCTATATGTGGTGAA+TGG | + | chr1_1:13582225-13582244 | Msa0009300:CDS | 30.0% | |
| GCATAAATTTGTCATCGATA+GGG | + | chr1_1:13582247-13582266 | Msa0009300:CDS | 30.0% | |
| CATAAATTTGTCATCGATAG+GGG | + | chr1_1:13582248-13582267 | Msa0009300:CDS | 30.0% | |
| ACGAGTAATAAATGGAAAAG+CGG | - | chr1_1:13582506-13582525 | None:intergenic | 30.0% | |
| GACTTATCACGAGTAATAAA+TGG | - | chr1_1:13582514-13582533 | None:intergenic | 30.0% | |
| CATCCTTTAATGGAAAAGTT+CGG | + | chr1_1:13582644-13582663 | Msa0009300:intron | 30.0% | |
| ! | TATCCGAACTTTTCCATTAA+AGG | - | chr1_1:13582650-13582669 | None:intergenic | 30.0% |
| ! | TTTGATTTCCACATATAGCA+AGG | + | chr1_1:13582716-13582735 | Msa0009300:intron | 30.0% |
| CTTCATAAATTTGAGAACGA+AGG | - | chr1_1:13583028-13583047 | None:intergenic | 30.0% | |
| AAGGAGAGATGTTCAAATTA+CGG | - | chr1_1:13583063-13583082 | None:intergenic | 30.0% | |
| TTTCACATGATCTACAACAA+AGG | - | chr1_1:13583315-13583334 | None:intergenic | 30.0% | |
| ! | TTTGTTGTAGATCATGTGAA+AGG | + | chr1_1:13583314-13583333 | Msa0009300:intron | 30.0% |
| AGTTAATATCTACCTTTGCT+AGG | + | chr1_1:13583362-13583381 | Msa0009300:intron | 30.0% | |
| GTTAATATCTACCTTTGCTA+GGG | + | chr1_1:13583363-13583382 | Msa0009300:intron | 30.0% | |
| TTAATATCTACCTTTGCTAG+GGG | + | chr1_1:13583364-13583383 | Msa0009300:intron | 30.0% | |
| GCTAATTTATTATCGGGTAT+GGG | - | chr1_1:13583551-13583570 | None:intergenic | 30.0% | |
| AGCTAATTTATTATCGGGTA+TGG | - | chr1_1:13583552-13583571 | None:intergenic | 30.0% | |
| ATGAGTAAATTAAGGTAGGT+GGG | - | chr1_1:13583648-13583667 | None:intergenic | 30.0% | |
| AATGAGTAAATTAAGGTAGG+TGG | - | chr1_1:13583649-13583668 | None:intergenic | 30.0% | |
| ATCCAAATATTTGTGATGCA+TGG | - | chr1_1:13583725-13583744 | None:intergenic | 30.0% | |
| CTTTGTAAATTTGAGAACGA+AGG | - | chr1_1:13583755-13583774 | None:intergenic | 30.0% | |
| ATGATATAAATCAGGTAGAG+AGG | + | chr1_1:13583212-13583231 | Msa0009300:intron | 30.0% | |
| ATTTAGTATCCAGTTCTTTC+AGG | - | chr1_1:13583998-13584017 | None:intergenic | 30.0% | |
| TTTGATGTAGATCATGTGAA+AGG | + | chr1_1:13584035-13584054 | Msa0009300:CDS | 30.0% | |
| !! | TTTAGAGTACTTTTGCATCA+CGG | - | chr1_1:13584260-13584279 | None:intergenic | 30.0% |
| TCGGCAAATATTATATTGGA+CGG | - | chr1_1:13584326-13584345 | None:intergenic | 30.0% | |
| GGCAATAATCAATTATTCCT+CGG | - | chr1_1:13584445-13584464 | None:intergenic | 30.0% | |
| TACCAAAACATGGAACAAAT+GGG | + | chr1_1:13584511-13584530 | Msa0009300:CDS | 30.0% | |
| GATGGAAAAGAAAGAAGAGA+GGG | - | chr1_1:13575932-13575951 | None:intergenic | 35.0% | |
| TGATGGAAAAGAAAGAAGAG+AGG | - | chr1_1:13575933-13575952 | None:intergenic | 35.0% | |
| !! | CATTGGTTCTTCTTCATTGA+AGG | + | chr1_1:13576103-13576122 | Msa0009300:CDS | 35.0% |
| GGTTCCAAATTGAAGTTTCT+GGG | + | chr1_1:13576268-13576287 | Msa0009300:intron | 35.0% | |
| CAAACCCAGAAACTTCAATT+TGG | - | chr1_1:13576275-13576294 | None:intergenic | 35.0% | |
| !! | AAATTGTTGCTGTGCTGTTT+GGG | + | chr1_1:13576375-13576394 | Msa0009300:intron | 35.0% |
| TAGAAACCATAAGCTGTTTG+TGG | + | chr1_1:13576407-13576426 | Msa0009300:intron | 35.0% | |
| AGAAACCATAAGCTGTTTGT+GGG | + | chr1_1:13576408-13576427 | Msa0009300:intron | 35.0% | |
| TAAGAGAAGATTGATGCAGA+TGG | + | chr1_1:13576527-13576546 | Msa0009300:intron | 35.0% | |
| GATGGAAAGAAGAAAGAAGA+AGG | + | chr1_1:13576545-13576564 | Msa0009300:CDS | 35.0% | |
| TGGAAAGAAGAAAGAAGAAG+GGG | + | chr1_1:13576547-13576566 | Msa0009300:CDS | 35.0% | |
| !! | AAAAATAAATGGGTTGGGAG+AGG | + | chr1_1:13576704-13576723 | Msa0009300:intron | 35.0% |
| GAGACATTATCTCAAACACT+TGG | - | chr1_1:13576736-13576755 | None:intergenic | 35.0% | |
| ! | AAGTAGCAGTTAAGTTGTTG+TGG | + | chr1_1:13576819-13576838 | Msa0009300:intron | 35.0% |
| ! | AGTAGCAGTTAAGTTGTTGT+GGG | + | chr1_1:13576820-13576839 | Msa0009300:intron | 35.0% |
| ! | TGTTTTGCAGAAGCTTAAGA+TGG | + | chr1_1:13576916-13576935 | Msa0009300:intron | 35.0% |
| AATACAAGTTGTTGCAGGTA+TGG | + | chr1_1:13576939-13576958 | Msa0009300:intron | 35.0% | |
| ! | TTTTTATGGTCCGTATAAGC+TGG | + | chr1_1:13577043-13577062 | Msa0009300:intron | 35.0% |
| GAATTACCTTCTGCAGAATT+TGG | - | chr1_1:13577123-13577142 | None:intergenic | 35.0% | |
| AGAAGGATATCTCTAATGGA+TGG | + | chr1_1:13577175-13577194 | Msa0009300:intron | 35.0% | |
| ! | TTTTGTGCGGTTTGAATTTC+AGG | + | chr1_1:13577241-13577260 | Msa0009300:intron | 35.0% |
| TCCAAAAAGAAAGTCTGGAA+CGG | - | chr1_1:13577527-13577546 | None:intergenic | 35.0% | |
| GTTCTTCCAAAAAGAAAGTC+TGG | - | chr1_1:13577532-13577551 | None:intergenic | 35.0% | |
| ACACACATCAAAGCAATTAC+AGG | - | chr1_1:13577610-13577629 | None:intergenic | 35.0% | |
| GACAATTTCAGGATATGTTG+AGG | + | chr1_1:13577636-13577655 | Msa0009300:intron | 35.0% | |
| ACTGAAACTTCGATAAATGC+AGG | - | chr1_1:13577942-13577961 | None:intergenic | 35.0% | |
| TGTTCCTCTCATATGTTGAA+CGG | - | chr1_1:13578064-13578083 | None:intergenic | 35.0% | |
| !!! | TTTTTTGCGTAGAACATGAG+AGG | + | chr1_1:13578115-13578134 | Msa0009300:intron | 35.0% |
| AGAACATGAGAGGAACAATA+TGG | + | chr1_1:13578125-13578144 | Msa0009300:intron | 35.0% | |
| GAACATGAGAGGAACAATAT+GGG | + | chr1_1:13578126-13578145 | Msa0009300:intron | 35.0% | |
| CGCTGTTAAAATTGTTGAAG+GGG | - | chr1_1:13578412-13578431 | None:intergenic | 35.0% | |
| CACGCTGTTAAAATTGTTGA+AGG | - | chr1_1:13578414-13578433 | None:intergenic | 35.0% | |
| GACTTAAGAATTACCTCAGT+TGG | - | chr1_1:13578715-13578734 | None:intergenic | 35.0% | |
| CTTTACAACTCTACTCTACT+TGG | + | chr1_1:13578772-13578791 | Msa0009300:intron | 35.0% | |
| CTCTACTCTACTTGGTAAAA+AGG | + | chr1_1:13578780-13578799 | Msa0009300:intron | 35.0% | |
| TAAAAAGGTCAATCCGAAGT+TGG | + | chr1_1:13578795-13578814 | Msa0009300:intron | 35.0% | |
| AAGCCTTTGCATTATCAGTA+TGG | + | chr1_1:13578830-13578849 | Msa0009300:CDS | 35.0% | |
| ! | TGTCCATACTGATAATGCAA+AGG | - | chr1_1:13578836-13578855 | None:intergenic | 35.0% |
| ATCAGTATGGACAACATCAA+TGG | + | chr1_1:13578843-13578862 | Msa0009300:CDS | 35.0% | |
| !! | GGATTAGTTCTGATTGCTTT+AGG | + | chr1_1:13578883-13578902 | Msa0009300:intron | 35.0% |
| !! | CTTTAGGGATGCTTTCATTT+TGG | + | chr1_1:13578899-13578918 | Msa0009300:intron | 35.0% |
| ! | GCAATTTTTGACACAATGCA+GGG | + | chr1_1:13578921-13578940 | Msa0009300:intron | 35.0% |
| CAAGAAAAATCTCAAACCAG+AGG | - | chr1_1:13579041-13579060 | None:intergenic | 35.0% | |
| !! | CTCTGGTTTGAGATTTTTCT+TGG | + | chr1_1:13579039-13579058 | Msa0009300:intron | 35.0% |
| !! | CTGGTTTGAGATTTTTCTTG+GGG | + | chr1_1:13579041-13579060 | Msa0009300:intron | 35.0% |
| GGCAAAACCTGAAAAGATAT+TGG | - | chr1_1:13579081-13579100 | None:intergenic | 35.0% | |
| GGTTGTAAAATGTCTTGCTT+TGG | + | chr1_1:13579166-13579185 | Msa0009300:intron | 35.0% | |
| ATATTGTAAACGGAATGAGC+TGG | - | chr1_1:13579409-13579428 | None:intergenic | 35.0% | |
| TCATTCCGTTTACAATATGC+TGG | + | chr1_1:13579411-13579430 | Msa0009300:intron | 35.0% | |
| !! | GGTGATGATATTGCTTTTGT+TGG | + | chr1_1:13579588-13579607 | Msa0009300:CDS | 35.0% |
| ! | GGTTGAATTTGAAATCGCAT+TGG | + | chr1_1:13579723-13579742 | Msa0009300:intron | 35.0% |
| TGTCCACTGGATGAAATATA+TGG | - | chr1_1:13579926-13579945 | None:intergenic | 35.0% | |
| TATTTCATCCAGTGGACATT+TGG | + | chr1_1:13579928-13579947 | Msa0009300:intron | 35.0% | |
| ! | CAAAGTGTTTACCTATAAGC+AGG | - | chr1_1:13580023-13580042 | None:intergenic | 35.0% |
| ACACTTTGTATAGACACCAT+CGG | + | chr1_1:13580035-13580054 | Msa0009300:intron | 35.0% | |
| GATAAATTGGATTACTGCCT+TGG | - | chr1_1:13580122-13580141 | None:intergenic | 35.0% | |
| !! | TTTGCTAATTTGCTAGGACA+AGG | + | chr1_1:13580214-13580233 | Msa0009300:intron | 35.0% |
| ! | CTTCTTTTCAACCTGAACAA+CGG | - | chr1_1:13580324-13580343 | None:intergenic | 35.0% |
| !! | GTTCAGGTTGAAAAGAAGAA+TGG | + | chr1_1:13580326-13580345 | Msa0009300:CDS | 35.0% |
| TCCTCTCATCACAATGATAT+TGG | - | chr1_1:13580385-13580404 | None:intergenic | 35.0% | |
| GTGATGAGAGGAAAATAACT+CGG | + | chr1_1:13580393-13580412 | Msa0009300:intron | 35.0% | |
| CACAGTTTCTCTTATTGTGA+AGG | + | chr1_1:13580486-13580505 | Msa0009300:intron | 35.0% | |
| GATCACTCTGTTGTAATTCT+TGG | + | chr1_1:13580655-13580674 | Msa0009300:CDS | 35.0% | |
| GAGTCATTGTATTGTTCTTG+AGG | - | chr1_1:13580694-13580713 | None:intergenic | 35.0% | |
| CAATACAATGACTCTTCCAA+AGG | + | chr1_1:13580700-13580719 | Msa0009300:CDS | 35.0% | |
| ! | ATTTTCCATGCTATCACCTT+TGG | - | chr1_1:13580719-13580738 | None:intergenic | 35.0% |
| TAGGAGAATTTGATTGGACT+TGG | + | chr1_1:13580897-13580916 | Msa0009300:intron | 35.0% | |
| TTGATTGGACTTGGATTCTT+TGG | + | chr1_1:13580906-13580925 | Msa0009300:intron | 35.0% | |
| ! | GACTTGGATTCTTTGGTAAT+TGG | + | chr1_1:13580913-13580932 | Msa0009300:intron | 35.0% |
| CAACTCAATGATTGTTGAGA+AGG | - | chr1_1:13581040-13581059 | None:intergenic | 35.0% | |
| AGATTAAACCCATCGTCTTA+AGG | + | chr1_1:13581264-13581283 | Msa0009300:intron | 35.0% | |
| TGGTTGCTCTTATCTAATGT+GGG | + | chr1_1:13581319-13581338 | Msa0009300:intron | 35.0% | |
| !! | TAGAGCCTTTTTCATAGTAC+AGG | - | chr1_1:13581534-13581553 | None:intergenic | 35.0% |
| !! | TAACTTGATTTGCTAACCCT+TGG | - | chr1_1:13581591-13581610 | None:intergenic | 35.0% |
| ! | GGGTTAGCAAATCAAGTTAT+AGG | + | chr1_1:13581592-13581611 | Msa0009300:intron | 35.0% |
| !! | CTCTAACACAGATGTTGTTT+TGG | + | chr1_1:13581765-13581784 | Msa0009300:intron | 35.0% |
| CTGAATTCAATTGGGTCATT+AGG | + | chr1_1:13581970-13581989 | Msa0009300:intron | 35.0% | |
| !! | TGCTCTTTGAGATGTGATTA+GGG | - | chr1_1:13582109-13582128 | None:intergenic | 35.0% |
| !! | ATGCTCTTTGAGATGTGATT+AGG | - | chr1_1:13582110-13582129 | None:intergenic | 35.0% |
| GGCATAAATTTGTCATCGAT+AGG | + | chr1_1:13582246-13582265 | Msa0009300:CDS | 35.0% | |
| CGAGTAATAAATGGAAAAGC+GGG | - | chr1_1:13582505-13582524 | None:intergenic | 35.0% | |
| TATTTGTGATGCATGGTCTA+AGG | - | chr1_1:13582991-13583010 | None:intergenic | 35.0% | |
| ATCCAGATATTTGTGATGCA+TGG | - | chr1_1:13582998-13583017 | None:intergenic | 35.0% | |
| GTACGTATAATTCACCTGAA+AGG | + | chr1_1:13583106-13583125 | Msa0009300:intron | 35.0% | |
| ! | ATTTAGTATCGAGTCCTTTC+AGG | - | chr1_1:13583123-13583142 | None:intergenic | 35.0% |
| GTTTGTTCACCTGAAATAAC+TGG | + | chr1_1:13583261-13583280 | Msa0009300:intron | 35.0% | |
| GTATCCACGGGTATAATAAA+CGG | + | chr1_1:13583460-13583479 | Msa0009300:intron | 35.0% | |
| TATCCACGGGTATAATAAAC+GGG | + | chr1_1:13583461-13583480 | Msa0009300:intron | 35.0% | |
| TATTTGTGATGCATGGTGTA+AGG | - | chr1_1:13583718-13583737 | None:intergenic | 35.0% | |
| CACCATGCATCACAAATATT+TGG | + | chr1_1:13583720-13583739 | Msa0009300:intron | 35.0% | |
| CTACCTATAATTCACCTGAA+AGG | + | chr1_1:13583830-13583849 | Msa0009300:intron | 35.0% | |
| ! | AGTCCTTTCAGGTGAATTAT+AGG | - | chr1_1:13583112-13583131 | None:intergenic | 35.0% |
| ! | ATTTAGTATCGAGTCCTTTC+AGG | - | chr1_1:13583123-13583142 | None:intergenic | 35.0% |
| ! | TTTGCTGTAGATCATGTGAA+AGG | + | chr1_1:13583884-13583903 | Msa0009300:intron | 35.0% |
| ! | TCAGGTAATAGGGTTTTCAT+TGG | + | chr1_1:13584091-13584110 | Msa0009300:intron | 35.0% |
| ATTGGTATACGTTCAAGCTT+TGG | + | chr1_1:13584109-13584128 | Msa0009300:intron | 35.0% | |
| !! | TTTGGTAACAGGGTTTTCAT+TGG | + | chr1_1:13584127-13584146 | Msa0009300:intron | 35.0% |
| !! | TTAGAGTACTTTTGCATCAC+GGG | - | chr1_1:13584259-13584278 | None:intergenic | 35.0% |
| AGTAATTAAAGGAAAAGCCG+AGG | + | chr1_1:13584425-13584444 | Msa0009300:intron | 35.0% | |
| ! | CATACTTTATCCTTTTGTGC+AGG | + | chr1_1:13584484-13584503 | Msa0009300:intron | 35.0% |
| GTACCAAAACATGGAACAAA+TGG | + | chr1_1:13584510-13584529 | Msa0009300:CDS | 35.0% | |
| ! | TTCCCATTTGTTCCATGTTT+TGG | - | chr1_1:13584516-13584535 | None:intergenic | 35.0% |
| TAAAGGTCAAAACGCTTCTT+TGG | + | chr1_1:13584597-13584616 | Msa0009300:CDS | 35.0% | |
| ! | TTACCCTTTTGCCCTCATTA+AGG | + | chr1_1:13575672-13575691 | Msa0009300:CDS | 40.0% |
| ! | TACCCTTTTGCCCTCATTAA+GGG | + | chr1_1:13575673-13575692 | Msa0009300:CDS | 40.0% |
| GACGAAAATGCCCTTAATGA+GGG | - | chr1_1:13575686-13575705 | None:intergenic | 40.0% | |
| TGACGAAAATGCCCTTAATG+AGG | - | chr1_1:13575687-13575706 | None:intergenic | 40.0% | |
| !!! | GAGGCAATCTTGGTTTTGAT+CGG | + | chr1_1:13575851-13575870 | Msa0009300:CDS | 40.0% |
| TCCTTCTCTCTTCTCAAACA+CGG | + | chr1_1:13575901-13575920 | Msa0009300:intron | 40.0% | |
| AAAAGAAAGAAGAGAGGGTG+AGG | - | chr1_1:13575927-13575946 | None:intergenic | 40.0% | |
| !! | AGGGTTTGATTTTGTGGGTT+TGG | + | chr1_1:13576013-13576032 | Msa0009300:intron | 40.0% |
| ! | TGCAGATAGTTCTGTCTCAT+TGG | + | chr1_1:13576086-13576105 | Msa0009300:intron | 40.0% |
| AATTCAGTCAGACGGTGATT+AGG | + | chr1_1:13576246-13576265 | Msa0009300:intron | 40.0% | |
| ATTCAGTCAGACGGTGATTA+GGG | + | chr1_1:13576247-13576266 | Msa0009300:intron | 40.0% | |
| GGGTTCCAAATTGAAGTTTC+TGG | + | chr1_1:13576267-13576286 | Msa0009300:intron | 40.0% | |
| ! | GAAATTGTTGCTGTGCTGTT+TGG | + | chr1_1:13576374-13576393 | Msa0009300:intron | 40.0% |
| TTCATCCCACAAACAGCTTA+TGG | - | chr1_1:13576416-13576435 | None:intergenic | 40.0% | |
| ! | GTAGCAGTTAAGTTGTTGTG+GGG | + | chr1_1:13576821-13576840 | Msa0009300:intron | 40.0% |
| GATGGAATACAAGTTGTTGC+AGG | + | chr1_1:13576934-13576953 | Msa0009300:intron | 40.0% | |
| ! | TTGGAGTTTTTGTCTTGCTG+CGG | + | chr1_1:13576978-13576997 | Msa0009300:intron | 40.0% |
| ! | AAGCTTGCCAAGCGTTTTTA+TGG | + | chr1_1:13577029-13577048 | Msa0009300:intron | 40.0% |
| ATACGGACCATAAAAACGCT+TGG | - | chr1_1:13577039-13577058 | None:intergenic | 40.0% | |
| GTTGTATTTGGGTCACCTTA+TGG | - | chr1_1:13577087-13577106 | None:intergenic | 40.0% | |
| GATTCACCCTTTACAAGTTC+TGG | + | chr1_1:13577149-13577168 | Msa0009300:intron | 40.0% | |
| TCCAAGCACTTGGAATTAGT+AGG | + | chr1_1:13577414-13577433 | Msa0009300:intron | 40.0% | |
| ! | TCCGTTCCAGACTTTCTTTT+TGG | + | chr1_1:13577523-13577542 | Msa0009300:intron | 40.0% |
| GCCTGAAAAGAAAACAGACA+CGG | + | chr1_1:13577574-13577593 | Msa0009300:intron | 40.0% | |
| CCTGAAAAGAAAACAGACAC+GGG | + | chr1_1:13577575-13577594 | Msa0009300:intron | 40.0% | |
| ACCTGATGAAATCCTCACTT+TGG | + | chr1_1:13577693-13577712 | Msa0009300:CDS | 40.0% | |
| TCCAAAGTGAGGATTTCATC+AGG | - | chr1_1:13577697-13577716 | None:intergenic | 40.0% | |
| GTCGGTGTAAAAAGCTGAAA+GGG | + | chr1_1:13577728-13577747 | Msa0009300:CDS | 40.0% | |
| GTGTAAAAAGCTGAAAGGGT+TGG | + | chr1_1:13577732-13577751 | Msa0009300:CDS | 40.0% | |
| GCTAAGTAGGGATAGAGATT+GGG | - | chr1_1:13577885-13577904 | None:intergenic | 40.0% | |
| TGCTAAGTAGGGATAGAGAT+TGG | - | chr1_1:13577886-13577905 | None:intergenic | 40.0% | |
| CTCTCATATGTTGAACGGAA+TGG | - | chr1_1:13578059-13578078 | None:intergenic | 40.0% | |
| CATTCCGTTCAACATATGAG+AGG | + | chr1_1:13578057-13578076 | Msa0009300:intron | 40.0% | |
| AACTGTCAGTTGTGTTTCAG+AGG | - | chr1_1:13578199-13578218 | None:intergenic | 40.0% | |
| CTGACAGTTTCGACACAATT+AGG | + | chr1_1:13578210-13578229 | Msa0009300:intron | 40.0% | |
| TGGACTATACTTTGAGCACA+AGG | + | chr1_1:13578365-13578384 | Msa0009300:intron | 40.0% | |
| ATACTTTGAGCACAAGGTTG+TGG | + | chr1_1:13578371-13578390 | Msa0009300:intron | 40.0% | |
| CTTGTAAATCTTCAAGAGGG+TGG | - | chr1_1:13578624-13578643 | None:intergenic | 40.0% | |
| ! | AGATTGTTCTGAACCAACTG+AGG | + | chr1_1:13578699-13578718 | Msa0009300:intron | 40.0% |
| ! | GGCAATTTTTGACACAATGC+AGG | + | chr1_1:13578920-13578939 | Msa0009300:intron | 40.0% |
| !! | TGTTGATTCGTCCATTTCAG+TGG | + | chr1_1:13578976-13578995 | Msa0009300:CDS | 40.0% |
| AGTAAACTCTGCCACTGAAA+TGG | - | chr1_1:13578990-13579009 | None:intergenic | 40.0% | |
| TGTTGAATTGACAGACTCAC+CGG | - | chr1_1:13579017-13579036 | None:intergenic | 40.0% | |
| TCTGTCAATTCAACAACCTC+TGG | + | chr1_1:13579022-13579041 | Msa0009300:intron | 40.0% | |
| AGGTTGCGAGATTATATGAG+TGG | + | chr1_1:13579231-13579250 | Msa0009300:intron | 40.0% | |
| GGTTGCGAGATTATATGAGT+GGG | + | chr1_1:13579232-13579251 | Msa0009300:intron | 40.0% | |
| !! | TATGAGTGGGTTGTGTTATG+AGG | + | chr1_1:13579245-13579264 | Msa0009300:CDS | 40.0% |
| !! | ATGAGTGGGTTGTGTTATGA+GGG | + | chr1_1:13579246-13579265 | Msa0009300:CDS | 40.0% |
| TTTCCACCATCTCAGCATAT+TGG | + | chr1_1:13579567-13579586 | Msa0009300:CDS | 40.0% | |
| TCATCACCAATATGCTGAGA+TGG | - | chr1_1:13579576-13579595 | None:intergenic | 40.0% | |
| ! | CTTTTGTTGGAAAGGACATC+TGG | + | chr1_1:13579601-13579620 | Msa0009300:CDS | 40.0% |
| AAAAGGATTGAGGTTCTCAG+TGG | - | chr1_1:13579684-13579703 | None:intergenic | 40.0% | |
| AATTGCAACCAAATGTCCAC+TGG | - | chr1_1:13579939-13579958 | None:intergenic | 40.0% | |
| TAGTTTCATCGCCTGCTTAT+AGG | + | chr1_1:13580009-13580028 | Msa0009300:intron | 40.0% | |
| ! | CATAGCTTTGCTTTGTATGC+TGG | + | chr1_1:13580093-13580112 | Msa0009300:intron | 40.0% |
| !! | TAATTTGCTAGGACAAGGCA+AGG | + | chr1_1:13580219-13580238 | Msa0009300:intron | 40.0% |
| TACTCTTTGGCAAAACACGT+TGG | - | chr1_1:13580248-13580267 | None:intergenic | 40.0% | |
| ! | ACGTGTTTTGCCAAAGAGTA+TGG | + | chr1_1:13580248-13580267 | Msa0009300:CDS | 40.0% |
| !! | TTTTGCCAAAGAGTATGGTG+TGG | + | chr1_1:13580253-13580272 | Msa0009300:CDS | 40.0% |
| CAACATTACGTAGTCGTCAA+GGG | - | chr1_1:13580279-13580298 | None:intergenic | 40.0% | |
| GCCAATATCATTGTGATGAG+AGG | + | chr1_1:13580381-13580400 | Msa0009300:intron | 40.0% | |
| !! | AGAAATACCGACTTCATACG+CGG | + | chr1_1:13580608-13580627 | Msa0009300:intron | 40.0% |
| CACTCTGTTGTAATTCTTGG+AGG | + | chr1_1:13580658-13580677 | Msa0009300:CDS | 40.0% | |
| ATCTCATCTGTGTGTCTGAT+TGG | + | chr1_1:13580939-13580958 | Msa0009300:intron | 40.0% | |
| GTGAGTTAGAAGTCTTGCAT+CGG | + | chr1_1:13581208-13581227 | Msa0009300:intron | 40.0% | |
| !! | TGCATCGGTTTAACAAGTGT+AGG | + | chr1_1:13581223-13581242 | Msa0009300:intron | 40.0% |
| GTGTGTCTATCTCATTTGTC+TGG | + | chr1_1:13581299-13581318 | Msa0009300:intron | 40.0% | |
| CTGGTTGCTCTTATCTAATG+TGG | + | chr1_1:13581318-13581337 | Msa0009300:intron | 40.0% | |
| TTGCTCTTATCTAATGTGGG+TGG | + | chr1_1:13581322-13581341 | Msa0009300:intron | 40.0% | |
| TCATTATGTTGTGTCACGAG+AGG | - | chr1_1:13581359-13581378 | None:intergenic | 40.0% | |
| ! | ACACAAGAGACATTGAGTTG+TGG | + | chr1_1:13581381-13581400 | Msa0009300:intron | 40.0% |
| ! | TGGACGCTTTTCTTCTCATA+AGG | + | chr1_1:13581505-13581524 | Msa0009300:intron | 40.0% |
| GGAGTCCTGTACTATGAAAA+AGG | + | chr1_1:13581526-13581545 | Msa0009300:intron | 40.0% | |
| ATGCTTTAGTACACGTTCCA+AGG | + | chr1_1:13581571-13581590 | Msa0009300:intron | 40.0% | |
| TGCTTTAGTACACGTTCCAA+GGG | + | chr1_1:13581572-13581591 | Msa0009300:intron | 40.0% | |
| !!! | TTTGGTGATTGAGTTTTGGG+TGG | + | chr1_1:13581822-13581841 | Msa0009300:intron | 40.0% |
| ! | CTTTTCAGCATTCCTTCTTC+CGG | - | chr1_1:13582210-13582229 | None:intergenic | 40.0% |
| AGAATCCACCAACAAAGATG+TGG | + | chr1_1:13582306-13582325 | Msa0009300:CDS | 40.0% | |
| GAATCCACCAACAAAGATGT+GGG | + | chr1_1:13582307-13582326 | Msa0009300:CDS | 40.0% | |
| ! | ACTGTTGTCCTTGCTATATG+TGG | - | chr1_1:13582727-13582746 | None:intergenic | 40.0% |
| GACCATGCATCACAAATATC+TGG | + | chr1_1:13582993-13583012 | Msa0009300:intron | 40.0% | |
| CACATGATCTACTGCAAAGA+CGG | - | chr1_1:13583158-13583177 | None:intergenic | 40.0% | |
| !!! | TCCGTGATGGATTTTACTCA+CGG | - | chr1_1:13583418-13583437 | None:intergenic | 40.0% |
| AGTAAAATCCATCACGGACA+TGG | + | chr1_1:13583420-13583439 | Msa0009300:intron | 40.0% | |
| ATACCCGTTTATTATACCCG+TGG | - | chr1_1:13583467-13583486 | None:intergenic | 40.0% | |
| TTGATTGTATCCATACCCAC+AGG | + | chr1_1:13583523-13583542 | Msa0009300:intron | 40.0% | |
| !! | AAATCAGGTAGAGAGGCATT+CGG | + | chr1_1:13583944-13583963 | Msa0009300:intron | 40.0% |
| GTTTGTTCACCTGAAAGAAC+TGG | + | chr1_1:13583986-13584005 | Msa0009300:CDS | 40.0% | |
| ! | TACGTTCAAGCTTTGGTAAC+AGG | + | chr1_1:13584116-13584135 | Msa0009300:intron | 40.0% |
| ! | ACGTTCAAGCTTTGGTAACA+GGG | + | chr1_1:13584117-13584136 | Msa0009300:intron | 40.0% |
| TTGGTACATTCCTGCACAAA+AGG | - | chr1_1:13584497-13584516 | None:intergenic | 40.0% | |
| TGCAGGAATGTACCAAAACA+TGG | + | chr1_1:13584501-13584520 | Msa0009300:intron | 40.0% | |
| !!! | CGAGCTTGAATGCTTTTTCT+TGG | - | chr1_1:13584543-13584562 | None:intergenic | 40.0% |
| !! | AAAAGCATTCAAGCTCGCAA+TGG | + | chr1_1:13584546-13584565 | Msa0009300:CDS | 40.0% |
| GGGCAAAAGGGTAATTTCCA+TGG | - | chr1_1:13575666-13575685 | None:intergenic | 45.0% | |
| TGCCCTTAATGAGGGCAAAA+GGG | - | chr1_1:13575678-13575697 | None:intergenic | 45.0% | |
| ATGCCCTTAATGAGGGCAAA+AGG | - | chr1_1:13575679-13575698 | None:intergenic | 45.0% | |
| AAAAAGGGGGACGAGAGAAA+CGG | + | chr1_1:13575756-13575775 | Msa0009300:CDS | 45.0% | |
| AGAAAGAGGAGAGAGAGAGA+GGG | + | chr1_1:13575807-13575826 | Msa0009300:CDS | 45.0% | |
| GGGGATACATTGTTGAAAGC+TGG | + | chr1_1:13576566-13576585 | Msa0009300:CDS | 45.0% | |
| !! | GCTGCGGCCGTATTTAATTT+TGG | + | chr1_1:13576994-13577013 | Msa0009300:intron | 45.0% |
| AAAAACGCTTGGCAAGCTTC+TGG | - | chr1_1:13577028-13577047 | None:intergenic | 45.0% | |
| TACCTTCTGCAGAATTTGGC+AGG | - | chr1_1:13577119-13577138 | None:intergenic | 45.0% | |
| GTTTGCAACTTCCAAGCACT+TGG | + | chr1_1:13577404-13577423 | Msa0009300:intron | 45.0% | |
| GCCTACTAATTCCAAGTGCT+TGG | - | chr1_1:13577418-13577437 | None:intergenic | 45.0% | |
| ! | CCCGTGTCTGTTTTCTTTTC+AGG | - | chr1_1:13577578-13577597 | None:intergenic | 45.0% |
| GATCAGCATTGTCCAAAGTG+AGG | - | chr1_1:13577708-13577727 | None:intergenic | 45.0% | |
| CTTTGGACAATGCTGATCGT+CGG | + | chr1_1:13577710-13577729 | Msa0009300:CDS | 45.0% | |
| CGTCGGTGTAAAAAGCTGAA+AGG | + | chr1_1:13577727-13577746 | Msa0009300:CDS | 45.0% | |
| TGAGAGGAACAATATGGGAC+TGG | + | chr1_1:13578131-13578150 | Msa0009300:intron | 45.0% | |
| TTCTCAGTAGCTGCCAACTT+CGG | - | chr1_1:13578811-13578830 | None:intergenic | 45.0% | |
| GTTGAATTGACAGACTCACC+GGG | - | chr1_1:13579016-13579035 | None:intergenic | 45.0% | |
| TGAGGGCAACTTACATATCC+AGG | + | chr1_1:13579263-13579282 | Msa0009300:CDS | 45.0% | |
| TCACCAATATGCTGAGATGG+TGG | - | chr1_1:13579573-13579592 | None:intergenic | 45.0% | |
| GCTTTGTATGCTGGATACCA+AGG | + | chr1_1:13580102-13580121 | Msa0009300:intron | 45.0% | |
| GCAACATTACGTAGTCGTCA+AGG | - | chr1_1:13580280-13580299 | None:intergenic | 45.0% | |
| TGATCAGTACTACTTGCAGC+TGG | - | chr1_1:13580640-13580659 | None:intergenic | 45.0% | |
| CTCTTCCAAAGGTGATAGCA+TGG | + | chr1_1:13580711-13580730 | Msa0009300:CDS | 45.0% | |
| ATCTAATGTGGGTGGTTCCT+CGG | + | chr1_1:13581330-13581349 | Msa0009300:intron | 45.0% | |
| !!! | TGAGTTTTGGGTGGTGCTAA+AGG | + | chr1_1:13581831-13581850 | Msa0009300:intron | 45.0% |
| AAATAAGGACTGCCGGAAGA+AGG | + | chr1_1:13582195-13582214 | Msa0009300:CDS | 45.0% | |
| TCAACCCACATCTTTGTTGG+TGG | - | chr1_1:13582314-13582333 | None:intergenic | 45.0% | |
| TGCTCAACCCACATCTTTGT+TGG | - | chr1_1:13582317-13582336 | None:intergenic | 45.0% | |
| !!! | TCGGGAGTCAGCTACTTTTT+GGG | - | chr1_1:13582605-13582624 | None:intergenic | 45.0% |
| !!! | TTCGGGAGTCAGCTACTTTT+TGG | - | chr1_1:13582606-13582625 | None:intergenic | 45.0% |
| ! | TGATGCATGGTCTAAGGCAT+GGG | - | chr1_1:13582985-13583004 | None:intergenic | 45.0% |
| ATATCTACCTTTGCTAGGGG+TGG | + | chr1_1:13583367-13583386 | Msa0009300:intron | 45.0% | |
| ! | ATTTTTGCCACCCCTAGCAA+AGG | - | chr1_1:13583377-13583396 | None:intergenic | 45.0% |
| !!! | CCGTGATGGATTTTACTCAC+GGG | - | chr1_1:13583417-13583436 | None:intergenic | 45.0% |
| CCCGTGAGTAAAATCCATCA+CGG | + | chr1_1:13583414-13583433 | Msa0009300:intron | 45.0% | |
| GGTAGCTAAACGAGTATCCA+CGG | + | chr1_1:13583447-13583466 | Msa0009300:intron | 45.0% | |
| GTAGCTAAACGAGTATCCAC+GGG | + | chr1_1:13583448-13583467 | Msa0009300:intron | 45.0% | |
| TGATGCATGGTGTAAGGCAT+GGG | - | chr1_1:13583712-13583731 | None:intergenic | 45.0% | |
| ACGGATAGAGTGCGAAATGA+CGG | - | chr1_1:13584307-13584326 | None:intergenic | 45.0% | |
| AACTCGCAATGGCGAGTTAA+AGG | + | chr1_1:13584580-13584599 | Msa0009300:CDS | 45.0% | |
| !!! | ATTAAAAAAAAAAAACTTTT+TGG | - | chr1_1:13575986-13576005 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTAATGATTTTA+AGG | + | chr1_1:13575993-13576012 | Msa0009300:intron | 5.0% |
| !!! | TTTTTTTTTAATGATTTTAA+GGG | + | chr1_1:13575994-13576013 | Msa0009300:intron | 5.0% |
| AAAAGGGGGACGAGAGAAAC+GGG | + | chr1_1:13575757-13575776 | Msa0009300:CDS | 50.0% | |
| GAGAAAGAGGAGAGAGAGAG+AGG | + | chr1_1:13575806-13575825 | Msa0009300:CDS | 50.0% | |
| GCCGTGTTTGAGAAGAGAGA+AGG | - | chr1_1:13575905-13575924 | None:intergenic | 50.0% | |
| ATGGTCCGTATAAGCTGGTC+AGG | + | chr1_1:13577048-13577067 | Msa0009300:intron | 50.0% | |
| ATCCGCCTGACCAGCTTATA+CGG | - | chr1_1:13577056-13577075 | None:intergenic | 50.0% | |
| GGCGGATAGCTGAAACCATA+AGG | + | chr1_1:13577069-13577088 | Msa0009300:intron | 50.0% | |
| GGTGCAGGGCTGTTGTATTT+GGG | - | chr1_1:13577098-13577117 | None:intergenic | 50.0% | |
| AGGTGCAGGGCTGTTGTATT+TGG | - | chr1_1:13577099-13577118 | None:intergenic | 50.0% | |
| TGCAGAATTTGGCAGGTGCA+GGG | - | chr1_1:13577112-13577131 | None:intergenic | 50.0% | |
| CACCTGCCAAATTCTGCAGA+AGG | + | chr1_1:13577114-13577133 | Msa0009300:intron | 50.0% | |
| !! | GAAAGGGTTGGCTTTCTCTG+AGG | + | chr1_1:13577744-13577763 | Msa0009300:CDS | 50.0% |
| GTGGCAGAGTTTACTACTCC+CGG | + | chr1_1:13578995-13579014 | Msa0009300:CDS | 50.0% | |
| AAGGGCCACACCATACTCTT+TGG | - | chr1_1:13580261-13580280 | None:intergenic | 50.0% | |
| ACAACGGTGACGTTTCGCTT+CGG | - | chr1_1:13580308-13580327 | None:intergenic | 50.0% | |
| GAACTCTCCGCGTATGAAGT+CGG | - | chr1_1:13580618-13580637 | None:intergenic | 50.0% | |
| TCTAATGTGGGTGGTTCCTC+GGG | + | chr1_1:13581331-13581350 | Msa0009300:intron | 50.0% | |
| ! | GATGCATGGTCTAAGGCATG+GGG | - | chr1_1:13582984-13583003 | None:intergenic | 50.0% |
| ! | GTGATGCATGGTCTAAGGCA+TGG | - | chr1_1:13582986-13583005 | None:intergenic | 50.0% |
| ! | ATTTTACTCACGGGTACCCG+TGG | - | chr1_1:13583408-13583427 | None:intergenic | 50.0% |
| AATCCATCACGGACATGGAG+CGG | + | chr1_1:13583425-13583444 | Msa0009300:intron | 50.0% | |
| TATCGGGTATGGGTACCTGT+GGG | - | chr1_1:13583541-13583560 | None:intergenic | 50.0% | |
| TTATCGGGTATGGGTACCTG+TGG | - | chr1_1:13583542-13583561 | None:intergenic | 50.0% | |
| GATGCATGGTGTAAGGCATG+GGG | - | chr1_1:13583711-13583730 | None:intergenic | 50.0% | |
| GTGATGCATGGTGTAAGGCA+TGG | - | chr1_1:13583713-13583732 | None:intergenic | 50.0% | |
| CGAGCAAGAAGAACTCGCAA+TGG | + | chr1_1:13584569-13584588 | Msa0009300:CDS | 50.0% | |
| TTTGGCACTCAAGCTCGCAA+TGG | + | chr1_1:13584615-13584634 | Msa0009300:CDS | 50.0% | |
| GTCCGTATAAGCTGGTCAGG+CGG | + | chr1_1:13577051-13577070 | Msa0009300:intron | 55.0% | |
| CTGCAGAATTTGGCAGGTGC+AGG | - | chr1_1:13577113-13577132 | None:intergenic | 55.0% | |
| GCGAAACGTCACCGTTGTTC+AGG | + | chr1_1:13580310-13580329 | Msa0009300:CDS | 55.0% | |
| AGGGGTGGCAAAAATGCCCA+TGG | + | chr1_1:13583382-13583401 | Msa0009300:intron | 55.0% | |
| GGCAAAAATGCCCATGGCCA+CGG | + | chr1_1:13583388-13583407 | Msa0009300:intron | 55.0% | |
| GCAAAAATGCCCATGGCCAC+GGG | + | chr1_1:13583389-13583408 | Msa0009300:intron | 55.0% | |
| ATCCATCACGGACATGGAGC+GGG | + | chr1_1:13583426-13583445 | Msa0009300:intron | 55.0% | |
| GGTATGGGTACCTGTGGGTA+TGG | - | chr1_1:13583536-13583555 | None:intergenic | 55.0% | |
| GGGGACGAGAGAAACGGGAA+CGG | + | chr1_1:13575762-13575781 | Msa0009300:CDS | 60.0% | |
| GGGACGAGAGAAACGGGAAC+GGG | + | chr1_1:13575763-13575782 | Msa0009300:CDS | 60.0% | |
| GAGAGAAACGGGAACGGGAG+AGG | + | chr1_1:13575768-13575787 | Msa0009300:CDS | 60.0% | |
| ACGGGAACGGGAGAGGAAGA+AGG | + | chr1_1:13575775-13575794 | Msa0009300:CDS | 60.0% | |
| CGGGAACGGGAGAGGAAGAA+GGG | + | chr1_1:13575776-13575795 | Msa0009300:CDS | 60.0% | |
| GGGAACGGGAGAGGAAGAAG+GGG | + | chr1_1:13575777-13575796 | Msa0009300:CDS | 60.0% | |
| GGAACGGGAGAGGAAGAAGG+GGG | + | chr1_1:13575778-13575797 | Msa0009300:CDS | 60.0% | |
| GAACGGGAGAGGAAGAAGGG+GGG | + | chr1_1:13575779-13575798 | Msa0009300:CDS | 60.0% | |
| GAAGGGGGGACGAGAGAAAG+AGG | + | chr1_1:13575793-13575812 | Msa0009300:CDS | 60.0% | |
| !! | AGAGAGAGAGGGAGTACCGC+CGG | + | chr1_1:13575818-13575837 | Msa0009300:CDS | 60.0% |
| TGTGTCACGAGAGGATCCCG+AGG | - | chr1_1:13581350-13581369 | None:intergenic | 60.0% | |
| TACCCGCTCCATGTCCGTGA+TGG | - | chr1_1:13583431-13583450 | None:intergenic | 60.0% | |
| CGGTGGGAGGGAGGCAATCT+TGG | + | chr1_1:13575841-13575860 | Msa0009300:CDS | 65.0% | |
| TCACGGGTACCCGTGGCCAT+GGG | - | chr1_1:13583401-13583420 | None:intergenic | 65.0% | |
| !! | GAGAGAGGGAGTACCGCCGG+CGG | + | chr1_1:13575821-13575840 | Msa0009300:CDS | 70.0% |
| GATTGCCTCCCTCCCACCGC+CGG | - | chr1_1:13575840-13575859 | None:intergenic | 70.0% | |
| CTCACGGGTACCCGTGGCCA+TGG | - | chr1_1:13583402-13583421 | None:intergenic | 70.0% | |
| !! | AGAGGGAGTACCGCCGGCGG+TGG | + | chr1_1:13575824-13575843 | Msa0009300:CDS | 75.0% |
| !! | GAGGGAGTACCGCCGGCGGT+GGG | + | chr1_1:13575825-13575844 | Msa0009300:CDS | 75.0% |
| ! | GAGTACCGCCGGCGGTGGGA+GGG | + | chr1_1:13575829-13575848 | Msa0009300:CDS | 75.0% |
| !!! | GGAGTACCGCCGGCGGTGGG+AGG | + | chr1_1:13575828-13575847 | Msa0009300:CDS | 80.0% |
| ! | TACCGCCGGCGGTGGGAGGG+AGG | + | chr1_1:13575832-13575851 | Msa0009300:CDS | 80.0% |
| ! | TGCCTCCCTCCCACCGCCGG+CGG | - | chr1_1:13575837-13575856 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 13575659 | 13584649 | 13575659 | ID=Msa0009300;Name=Msa0009300 |
| chr1_1 | mRNA | 13575659 | 13584649 | 13575659 | ID=Msa0009300-mRNA-1;Parent=Msa0009300;Name=Msa0009300-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|0.07|0|0.35|1|1|14|0|546 |
| chr1_1 | exon | 13575659 | 13575877 | 13575659 | ID=Msa0009300-mRNA-1:exon:5152;Parent=Msa0009300-mRNA-1 |
| chr1_1 | exon | 13576091 | 13576124 | 13576091 | ID=Msa0009300-mRNA-1:exon:5153;Parent=Msa0009300-mRNA-1 |
| chr1_1 | exon | 13576531 | 13576587 | 13576531 | ID=Msa0009300-mRNA-1:exon:5154;Parent=Msa0009300-mRNA-1 |
| chr1_1 | exon | 13577647 | 13577765 | 13577647 | ID=Msa0009300-mRNA-1:exon:5155;Parent=Msa0009300-mRNA-1 |
| chr1_1 | exon | 13578802 | 13578864 | 13578802 | ID=Msa0009300-mRNA-1:exon:5156;Parent=Msa0009300-mRNA-1 |
| chr1_1 | exon | 13578942 | 13579016 | 13578942 | ID=Msa0009300-mRNA-1:exon:5157;Parent=Msa0009300-mRNA-1 |
| chr1_1 | exon | 13579093 | 13579142 | 13579093 | ID=Msa0009300-mRNA-1:exon:5158;Parent=Msa0009300-mRNA-1 |
| chr1_1 | exon | 13579233 | 13579284 | 13579233 | ID=Msa0009300-mRNA-1:exon:5159;Parent=Msa0009300-mRNA-1 |
| chr1_1 | exon | 13579510 | 13579662 | 13579510 | ID=Msa0009300-mRNA-1:exon:5160;Parent=Msa0009300-mRNA-1 |
| chr1_1 | exon | 13580230 | 13580352 | 13580230 | ID=Msa0009300-mRNA-1:exon:5161;Parent=Msa0009300-mRNA-1 |
| chr1_1 | exon | 13580610 | 13580813 | 13580610 | ID=Msa0009300-mRNA-1:exon:5162;Parent=Msa0009300-mRNA-1 |
| chr1_1 | exon | 13582101 | 13582337 | 13582101 | ID=Msa0009300-mRNA-1:exon:5163;Parent=Msa0009300-mRNA-1 |
| chr1_1 | exon | 13583984 | 13584094 | 13583984 | ID=Msa0009300-mRNA-1:exon:5164;Parent=Msa0009300-mRNA-1 |
| chr1_1 | exon | 13584506 | 13584649 | 13584506 | ID=Msa0009300-mRNA-1:exon:5165;Parent=Msa0009300-mRNA-1 |
| chr1_1 | CDS | 13575659 | 13575877 | 13575659 | ID=Msa0009300-mRNA-1:cds;Parent=Msa0009300-mRNA-1 |
| chr1_1 | CDS | 13576091 | 13576124 | 13576091 | ID=Msa0009300-mRNA-1:cds;Parent=Msa0009300-mRNA-1 |
| chr1_1 | CDS | 13576531 | 13576587 | 13576531 | ID=Msa0009300-mRNA-1:cds;Parent=Msa0009300-mRNA-1 |
| chr1_1 | CDS | 13577647 | 13577765 | 13577647 | ID=Msa0009300-mRNA-1:cds;Parent=Msa0009300-mRNA-1 |
| chr1_1 | CDS | 13578802 | 13578864 | 13578802 | ID=Msa0009300-mRNA-1:cds;Parent=Msa0009300-mRNA-1 |
| chr1_1 | CDS | 13578942 | 13579016 | 13578942 | ID=Msa0009300-mRNA-1:cds;Parent=Msa0009300-mRNA-1 |
| chr1_1 | CDS | 13579093 | 13579142 | 13579093 | ID=Msa0009300-mRNA-1:cds;Parent=Msa0009300-mRNA-1 |
| chr1_1 | CDS | 13579233 | 13579284 | 13579233 | ID=Msa0009300-mRNA-1:cds;Parent=Msa0009300-mRNA-1 |
| chr1_1 | CDS | 13579510 | 13579662 | 13579510 | ID=Msa0009300-mRNA-1:cds;Parent=Msa0009300-mRNA-1 |
| chr1_1 | CDS | 13580230 | 13580352 | 13580230 | ID=Msa0009300-mRNA-1:cds;Parent=Msa0009300-mRNA-1 |
| chr1_1 | CDS | 13580610 | 13580813 | 13580610 | ID=Msa0009300-mRNA-1:cds;Parent=Msa0009300-mRNA-1 |
| chr1_1 | CDS | 13582101 | 13582337 | 13582101 | ID=Msa0009300-mRNA-1:cds;Parent=Msa0009300-mRNA-1 |
| chr1_1 | CDS | 13583984 | 13584094 | 13583984 | ID=Msa0009300-mRNA-1:cds;Parent=Msa0009300-mRNA-1 |
| chr1_1 | CDS | 13584506 | 13584649 | 13584506 | ID=Msa0009300-mRNA-1:cds;Parent=Msa0009300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
