AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0226460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0226460 MtrunA17_Chr2g0332921 100.000 180 0 0 1 180 1 180 4.04e-130 362
Msa0226460 MtrunA17_Chr2g0307071 77.778 180 40 0 1 180 1 180 7.63e-94 270
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0226460 AT1G52600.1 91.667 180 15 0 1 180 1 180 4.70e-121 339
Msa0226460 AT3G15710.1 85.556 180 26 0 1 180 1 180 2.16e-110 312

Find 57 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGTTGTCGTTGTTCTTTC+TGG -0.006320 2_1:+76934234 Msa0226460:CDS
AATTAATATTATGCTGTTAA+TGG 0.174068 2_1:-76936430 None:intergenic
TATATTCTCATTGGTGCTTT+GGG 0.216256 2_1:+76936288 Msa0226460:CDS
GCTGCAAAGGCACCACATTA+TGG 0.262708 2_1:+76935643 Msa0226460:CDS
CGTTGTTCTTTCTGGAAGTA+TGG 0.268459 2_1:+76934242 Msa0226460:CDS
GGTTCTTACCTTATGTTGGC+TGG 0.291373 2_1:+76935978 Msa0226460:intron
TTACGTCTGCACTGATAATA+TGG 0.295460 2_1:+76934178 Msa0226460:CDS
GTATATTCTCATTGGTGCTT+TGG 0.303583 2_1:+76936287 Msa0226460:intron
CACTCACTCACTCAAGAAAT+TGG 0.305413 2_1:+76933268 Msa0226460:five_prime_UTR
GATCGTGCATCGTGTAATTA+AGG 0.306443 2_1:+76934717 Msa0226460:CDS
ATTAATTAATACAAAGTAGT+TGG 0.319152 2_1:+76936446 Msa0226460:three_prime_UTR
GTTTCTCTATTTGTATTTGT+TGG 0.349188 2_1:+76933224 Msa0226460:five_prime_UTR
GTACATGAAAGAGGAGATAC+TGG 0.367204 2_1:+76935369 Msa0226460:CDS
TTGGCAGGAGATAACAACTA+TGG 0.367451 2_1:+76935584 Msa0226460:intron
ACAATCTCTCCTGCGCGAAT+TGG 0.370765 2_1:-76934518 None:intergenic
CTGCAAAGGCACCACATTAT+GGG 0.401647 2_1:+76935644 Msa0226460:CDS
ACGGATCTGAAGAGATTTGA+TGG 0.414274 2_1:-76933364 None:intergenic
ATGGCCAGCTTTGGCTGCAA+AGG 0.415700 2_1:+76935630 Msa0226460:CDS
TGTATGCTCATGGCCAGCTT+TGG 0.429153 2_1:+76935621 Msa0226460:CDS
GGCAGGTTCTTACCTTATGT+TGG 0.435021 2_1:+76935974 Msa0226460:intron
GAAGAATCTCAATCAAATTA+CGG 0.442574 2_1:+76936341 Msa0226460:three_prime_UTR
CCAGAAAGAACAACGACAAC+AGG 0.443989 2_1:-76934234 None:intergenic
TCTTTCTGGAAGTATGGAAC+CGG 0.447654 2_1:+76934248 Msa0226460:CDS
CTTGTTCTTACACATGAGTA+AGG 0.448520 2_1:+76934493 Msa0226460:CDS
CTCACTCAGGCTGTTAGCCT+TGG 0.449557 2_1:+76933393 Msa0226460:CDS
AGCAAACAAACCTTGATGAT+AGG 0.465854 2_1:-76936025 None:intergenic
GGTGCCTTTGCAGCCAAAGC+TGG 0.467005 2_1:-76935634 None:intergenic
CACATTATGGGTAGAGCTGT+TGG 0.467483 2_1:+76935656 Msa0226460:CDS
GTTCTTACCTTATGTTGGCT+GGG 0.476337 2_1:+76935979 Msa0226460:CDS
ATTGTCACCCAGCCAACATA+AGG 0.486894 2_1:-76935986 None:intergenic
TTGCTTACACGTTTGAATCC+CGG 0.492003 2_1:-76934267 None:intergenic
TGGCAGGAGATAACAACTAT+GGG 0.501904 2_1:+76935585 Msa0226460:intron
TTTGCTCATGGTACTATTCG+AGG 0.505718 2_1:-76936369 None:intergenic
AGAAACGCAATGGGTTTCGT+TGG 0.517115 2_1:+76933327 Msa0226460:exon
ATTCAAGAAAGAAACGCAAT+GGG 0.520667 2_1:+76933318 Msa0226460:exon
ACATTATGGGTAGAGCTGTT+GGG 0.526062 2_1:+76935657 Msa0226460:CDS
ATATTCTCATTGGTGCTTTG+GGG 0.529101 2_1:+76936289 Msa0226460:CDS
CTTTCTGGAAGTATGGAACC+GGG 0.531861 2_1:+76934249 Msa0226460:CDS
TTAATTACACGATGCACGAT+CGG 0.532530 2_1:-76934715 None:intergenic
AAGGCATTGATGTGCATCAC+TGG 0.537420 2_1:+76934201 Msa0226460:CDS
GAGGTTGATGTTCTCACAAA+AGG 0.541893 2_1:+76935393 Msa0226460:CDS
CATTCAAGAAAGAAACGCAA+TGG 0.543308 2_1:+76933317 Msa0226460:exon
TGATAACTTCAAAAGAGTAA+AGG 0.546067 2_1:+76936319 Msa0226460:CDS
CAAATCTCTTCAGATCCGTC+AGG 0.547809 2_1:+76933368 Msa0226460:CDS
ATAACAACTATGGGGATGAC+AGG 0.548283 2_1:+76935594 Msa0226460:CDS
GATCCGTCAGGTCCTCACTC+AGG 0.557343 2_1:+76933380 Msa0226460:CDS
TACATGAAAGAGGAGATACT+GGG 0.588815 2_1:+76935370 Msa0226460:CDS
GACAGGCTACTGTATGCTCA+TGG 0.602506 2_1:+76935611 Msa0226460:CDS
GTCTGCACTGATAATATGGA+AGG 0.605731 2_1:+76934182 Msa0226460:CDS
AAAAGCATGACATTTGCTCA+TGG 0.612273 2_1:-76936381 None:intergenic
CAGCCTGAGTGAGGACCTGA+CGG 0.616226 2_1:-76933383 None:intergenic
AGTAAGGATCCAATTCGCGC+AGG 0.635833 2_1:+76934509 Msa0226460:CDS
CAACAGCTCTACCCATAATG+TGG 0.657840 2_1:-76935655 None:intergenic
CAAGGCTAACAGCCTGAGTG+AGG 0.659133 2_1:-76933392 None:intergenic
GGCAGGAGATAACAACTATG+GGG 0.694070 2_1:+76935586 Msa0226460:intron
TGAAAGAGGAGATACTGGGG+AGG 0.732394 2_1:+76935374 Msa0226460:CDS
ACATGAAAGAGGAGATACTG+GGG 0.746258 2_1:+76935371 Msa0226460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATCAATTATTATATG+GGG + chr2_1:76933613-76933632 Msa0226460:intron 10.0%
!!! TTAACTTTATTTTATCTTTT+TGG + chr2_1:76933977-76933996 Msa0226460:intron 10.0%
!!! TTGGATTTTATAATTTATTT+TGG + chr2_1:76936465-76936484 Msa0226460:three_prime_UTR 10.0%
!! TACGTTATACAATTTATATT+TGG + chr2_1:76933480-76933499 Msa0226460:intron 15.0%
!!! TCAATTTAGTTTATAATTCA+AGG + chr2_1:76933678-76933697 Msa0226460:intron 15.0%
!! AGAAAAAGGAAATATAATAT+TGG - chr2_1:76935496-76935515 None:intergenic 15.0%
!! AATTAATATTATGCTGTTAA+TGG - chr2_1:76936433-76936452 None:intergenic 15.0%
!! ATTAATTAATACAAAGTAGT+TGG + chr2_1:76936446-76936465 Msa0226460:three_prime_UTR 15.0%
!! TTTATGGGTTTATTGATAAA+TGG + chr2_1:76933716-76933735 Msa0226460:intron 20.0%
!! TAAATGGTTGTTTATCTTTA+AGG + chr2_1:76933732-76933751 Msa0226460:intron 20.0%
!!! TTGTTTATCTTTAAGGATTT+TGG + chr2_1:76933739-76933758 Msa0226460:intron 20.0%
!! TATTAGATACAGAATTACTA+AGG - chr2_1:76934309-76934328 None:intergenic 20.0%
!! TTAGTTGTCAATTTATATAG+TGG + chr2_1:76935519-76935538 Msa0226460:intron 20.0%
!! TTTACATTTATGTATGGTTA+TGG + chr2_1:76936089-76936108 Msa0226460:intron 20.0%
!!! ATTGGTTTAAAAATCATGAT+AGG - chr2_1:76936149-76936168 None:intergenic 20.0%
!!! TATCATGATTTTTAAACCAA+TGG + chr2_1:76936148-76936167 Msa0226460:intron 20.0%
!!! ATCATGATTTTTAAACCAAT+GGG + chr2_1:76936149-76936168 Msa0226460:intron 20.0%
!!! TAATTTATTTTGGTTGTTGT+TGG + chr2_1:76936475-76936494 Msa0226460:three_prime_UTR 20.0%
! GTTTCTCTATTTGTATTTGT+TGG + chr2_1:76933224-76933243 Msa0226460:five_prime_UTR 25.0%
!!! TGATTGAGTTGAATTGAATT+GGG - chr2_1:76933435-76933454 None:intergenic 25.0%
!!! TTGATTGAGTTGAATTGAAT+TGG - chr2_1:76933436-76933455 None:intergenic 25.0%
! TCAAAAACATCAAAATTCGA+CGG - chr2_1:76933536-76933555 None:intergenic 25.0%
!! AACTCACATCTAAAATTGAA+AGG - chr2_1:76933653-76933672 None:intergenic 25.0%
! AATAAACTGTTAATCCAAAC+AGG + chr2_1:76934060-76934079 Msa0226460:intron 25.0%
! CTATGAATAAAACAATGATC+TGG - chr2_1:76934121-76934140 None:intergenic 25.0%
! TTTCTGTTGCTAATGAATAT+TGG + chr2_1:76934453-76934472 Msa0226460:intron 25.0%
!!! TAATGAATATTGGTTTTTGC+AGG + chr2_1:76934463-76934482 Msa0226460:intron 25.0%
!!! AATGAATATTGGTTTTTGCA+GGG + chr2_1:76934464-76934483 Msa0226460:intron 25.0%
! TTGAAGTAAGTAAAACATAC+AGG - chr2_1:76934585-76934604 None:intergenic 25.0%
! ATTTCATTTCTTGAATGTGT+AGG + chr2_1:76934936-76934955 Msa0226460:intron 25.0%
! TTTCATTTCTTGAATGTGTA+GGG + chr2_1:76934937-76934956 Msa0226460:intron 25.0%
! TATGTAGTTACAGTTTGAAT+AGG - chr2_1:76934966-76934985 None:intergenic 25.0%
! GATAAATAAGAACTAAAAGC+AGG - chr2_1:76935072-76935091 None:intergenic 25.0%
! ATCACTAATCTGAGAAATAA+TGG + chr2_1:76935254-76935273 Msa0226460:intron 25.0%
!! TAAATGCTTGATCATTTTGT+AGG + chr2_1:76935347-76935366 Msa0226460:intron 25.0%
! TCAAATTCACTATTGAGATT+GGG - chr2_1:76935472-76935491 None:intergenic 25.0%
! ATCAAATTCACTATTGAGAT+TGG - chr2_1:76935473-76935492 None:intergenic 25.0%
! GACTTGTAACATAAAGATTA+AGG + chr2_1:76935700-76935719 Msa0226460:intron 25.0%
! GAATGATATCTGTGATATTA+AGG + chr2_1:76935761-76935780 Msa0226460:intron 25.0%
!! TGATATTAAGGTATTATGCA+TGG + chr2_1:76935773-76935792 Msa0226460:intron 25.0%
! TAAATGATAACACAATAGGT+TGG - chr2_1:76936054-76936073 None:intergenic 25.0%
!!! GGTTGTTTTACATTTATGTA+TGG + chr2_1:76936083-76936102 Msa0226460:intron 25.0%
! CTTGTTGCAATTCAAATTAT+AGG - chr2_1:76936231-76936250 None:intergenic 25.0%
! TGATAACTTCAAAAGAGTAA+AGG + chr2_1:76936319-76936338 Msa0226460:CDS 25.0%
! GAAGAATCTCAATCAAATTA+CGG + chr2_1:76936341-76936360 Msa0226460:three_prime_UTR 25.0%
!!! TCTTGTTTTGTTTGGTCTTT+GGG + chr2_1:76933202-76933221 Msa0226460:five_prime_UTR 30.0%
ATTCAAGAAAGAAACGCAAT+GGG + chr2_1:76933318-76933337 Msa0226460:exon 30.0%
!! ATTGAGTTGAATTGAATTGG+GGG - chr2_1:76933433-76933452 None:intergenic 30.0%
!! GATTGAGTTGAATTGAATTG+GGG - chr2_1:76933434-76933453 None:intergenic 30.0%
! TTTTTCGTGTTGTGGTTTAT+GGG + chr2_1:76933701-76933720 Msa0226460:intron 30.0%
!! TATCTTTAAGGATTTTGGTG+AGG + chr2_1:76933744-76933763 Msa0226460:intron 30.0%
!! ATCTTTAAGGATTTTGGTGA+GGG + chr2_1:76933745-76933764 Msa0226460:intron 30.0%
TGTGAGGAATTCTAATGTTA+AGG + chr2_1:76933773-76933792 Msa0226460:intron 30.0%
GTGAGGAATTCTAATGTTAA+GGG + chr2_1:76933774-76933793 Msa0226460:intron 30.0%
!!! ATGAATATTGGTTTTTGCAG+GGG + chr2_1:76934465-76934484 Msa0226460:intron 30.0%
! TAAAGGAAAAAAAGGGTACA+TGG - chr2_1:76934682-76934701 None:intergenic 30.0%
!!! ATGTACCCTTTTTTTCCTTT+AGG + chr2_1:76934681-76934700 Msa0226460:intron 30.0%
!!! TGTACCCTTTTTTTCCTTTA+GGG + chr2_1:76934682-76934701 Msa0226460:intron 30.0%
! TTAAGGTAAGCTCAGTATTT+TGG + chr2_1:76934734-76934753 Msa0226460:intron 30.0%
! AATATCTTGTCATTTGCAAG+TGG + chr2_1:76935202-76935221 Msa0226460:intron 30.0%
TGGATAAGATTGATATTACC+TGG + chr2_1:76935274-76935293 Msa0226460:intron 30.0%
! ATTTTGTAGGTACATGAAAG+AGG + chr2_1:76935360-76935379 Msa0226460:intron 30.0%
TTGACAACTAAACGAGAAAA+AGG - chr2_1:76935510-76935529 None:intergenic 30.0%
AAACAGCAAAATACAAGAGA+CGG - chr2_1:76935564-76935583 None:intergenic 30.0%
!!! CTCTTGTATTTTGCTGTTTT+TGG + chr2_1:76935565-76935584 Msa0226460:intron 30.0%
GATAAATTAGGATAAACCCT+TGG - chr2_1:76935858-76935877 None:intergenic 30.0%
GAATTAGCGTAGGATAAATT+AGG - chr2_1:76935870-76935889 None:intergenic 30.0%
ACATTGCTTGTATTTGTCAA+TGG + chr2_1:76935953-76935972 Msa0226460:intron 30.0%
CAGCTAAATGATAACACAAT+AGG - chr2_1:76936058-76936077 None:intergenic 30.0%
TGTTATCATTTAGCTGAAGT+TGG + chr2_1:76936062-76936081 Msa0226460:intron 30.0%
! GTTTTGCAGTATATTCTCAT+TGG + chr2_1:76936279-76936298 Msa0226460:intron 30.0%
! TATATTCTCATTGGTGCTTT+GGG + chr2_1:76936288-76936307 Msa0226460:CDS 30.0%
!!! CATGCTTTTTTTTAACTCGA+AGG + chr2_1:76936395-76936414 Msa0226460:three_prime_UTR 30.0%
!!! CTCTTGTTTTGTTTGGTCTT+TGG + chr2_1:76933201-76933220 Msa0226460:five_prime_UTR 35.0%
CATTCAAGAAAGAAACGCAA+TGG + chr2_1:76933317-76933336 Msa0226460:exon 35.0%
! ATTTGGTAGCTACATTGATC+TGG + chr2_1:76933497-76933516 Msa0226460:intron 35.0%
! TTTGGTAGCTACATTGATCT+GGG + chr2_1:76933498-76933517 Msa0226460:intron 35.0%
AAAATTCGACGGTTTCAAAG+TGG - chr2_1:76933525-76933544 None:intergenic 35.0%
! ATTCAAGGTTTTTCGTGTTG+TGG + chr2_1:76933693-76933712 Msa0226460:intron 35.0%
! GTTTTTCGTGTTGTGGTTTA+TGG + chr2_1:76933700-76933719 Msa0226460:intron 35.0%
!! TCTTTAAGGATTTTGGTGAG+GGG + chr2_1:76933746-76933765 Msa0226460:intron 35.0%
! TCTAATGTTAAGGGCATGTT+TGG + chr2_1:76933783-76933802 Msa0226460:intron 35.0%
ATGATCTGGAAGCAATTCTA+TGG - chr2_1:76934107-76934126 None:intergenic 35.0%
! TTACGTCTGCACTGATAATA+TGG + chr2_1:76934178-76934197 Msa0226460:CDS 35.0%
TGACACTGTACTGTTATTGT+AGG - chr2_1:76934336-76934355 None:intergenic 35.0%
!!! TGAATATTGGTTTTTGCAGG+GGG + chr2_1:76934466-76934485 Msa0226460:intron 35.0%
CTTGTTCTTACACATGAGTA+AGG + chr2_1:76934493-76934512 Msa0226460:CDS 35.0%
ATACAGGATATACAACAGAG+AGG - chr2_1:76934569-76934588 None:intergenic 35.0%
TCGTCCCTAAAGGAAAAAAA+GGG - chr2_1:76934689-76934708 None:intergenic 35.0%
TTAATTACACGATGCACGAT+CGG - chr2_1:76934718-76934737 None:intergenic 35.0%
ATCCACACATAATTGTCTTC+TGG + chr2_1:76934866-76934885 Msa0226460:intron 35.0%
ATAGGACCCAGATACAAAAA+TGG - chr2_1:76935035-76935054 None:intergenic 35.0%
! AAGCATTTAGAGTCTCAAAC+AGG - chr2_1:76935336-76935355 None:intergenic 35.0%
TACATGAAAGAGGAGATACT+GGG + chr2_1:76935370-76935389 Msa0226460:CDS 35.0%
AACAGCAAAATACAAGAGAC+GGG - chr2_1:76935563-76935582 None:intergenic 35.0%
!!! TGTATTTTGCTGTTTTTGGC+AGG + chr2_1:76935569-76935588 Msa0226460:intron 35.0%
GTGTTAGATATTCCACAAGT+AGG - chr2_1:76935815-76935834 None:intergenic 35.0%
TTGAACCTTTGAACATACCA+AGG + chr2_1:76935838-76935857 Msa0226460:intron 35.0%
TGAACCTTTGAACATACCAA+GGG + chr2_1:76935839-76935858 Msa0226460:intron 35.0%
TAAACCCTTGGTATGTTCAA+AGG - chr2_1:76935846-76935865 None:intergenic 35.0%
TTATCCTACGCTAATTCCTA+CGG + chr2_1:76935873-76935892 Msa0226460:intron 35.0%
! CGAAACATGCTTTGTTCTAT+AGG - chr2_1:76935907-76935926 None:intergenic 35.0%
GACTGAAAAACCTATCATCA+AGG + chr2_1:76936015-76936034 Msa0226460:CDS 35.0%
! AGCAAACAAACCTTGATGAT+AGG - chr2_1:76936028-76936047 None:intergenic 35.0%
! ATGATAACACAATAGGTTGG+CGG - chr2_1:76936051-76936070 None:intergenic 35.0%
TATGGTGAAACCTATCATCA+AGG + chr2_1:76936107-76936126 Msa0226460:intron 35.0%
! CATAAGCAAACCTTGATGAT+AGG - chr2_1:76936120-76936139 None:intergenic 35.0%
! CTATCATCAAGGTTTGCTTA+TGG + chr2_1:76936118-76936137 Msa0226460:intron 35.0%
GATCTACTTGCTCTAATGTA+AGG - chr2_1:76936209-76936228 None:intergenic 35.0%
! GTATATTCTCATTGGTGCTT+TGG + chr2_1:76936287-76936306 Msa0226460:intron 35.0%
! ATATTCTCATTGGTGCTTTG+GGG + chr2_1:76936289-76936308 Msa0226460:CDS 35.0%
! AAAAGCATGACATTTGCTCA+TGG - chr2_1:76936384-76936403 None:intergenic 35.0%
!!! GCGCTTTCTCTTGTTTTGTT+TGG + chr2_1:76933194-76933213 Msa0226460:five_prime_UTR 40.0%
CACTCACTCACTCAAGAAAT+TGG + chr2_1:76933268-76933287 Msa0226460:five_prime_UTR 40.0%
ACGGATCTGAAGAGATTTGA+TGG - chr2_1:76933367-76933386 None:intergenic 40.0%
! TGTTAAGGGCATGTTTGGAT+TGG + chr2_1:76933788-76933807 Msa0226460:intron 40.0%
GTCTCACAGACTTGTATGAT+TGG - chr2_1:76933829-76933848 None:intergenic 40.0%
TACAAGTCTGTGAGACTGTT+TGG + chr2_1:76933833-76933852 Msa0226460:intron 40.0%
ATAATCTGCATAGGCCTGTT+TGG - chr2_1:76934077-76934096 None:intergenic 40.0%
GGCGTTCATATAATCTGCAT+AGG - chr2_1:76934086-76934105 None:intergenic 40.0%
! TTTTCCTTGTGTTCTGCTTC+AGG + chr2_1:76934147-76934166 Msa0226460:intron 40.0%
! GTCTGCACTGATAATATGGA+AGG + chr2_1:76934182-76934201 Msa0226460:CDS 40.0%
! CGTTGTTCTTTCTGGAAGTA+TGG + chr2_1:76934242-76934261 Msa0226460:CDS 40.0%
! TCTTTCTGGAAGTATGGAAC+CGG + chr2_1:76934248-76934267 Msa0226460:CDS 40.0%
TTGCTTACACGTTTGAATCC+CGG - chr2_1:76934270-76934289 None:intergenic 40.0%
! GGCAACAGATTTTGTCAGTA+AGG - chr2_1:76934661-76934680 None:intergenic 40.0%
CTCGTCCCTAAAGGAAAAAA+AGG - chr2_1:76934690-76934709 None:intergenic 40.0%
GATCGTGCATCGTGTAATTA+AGG + chr2_1:76934717-76934736 Msa0226460:CDS 40.0%
! TGCTGAATGTGACTTTGAGA+CGG + chr2_1:76934799-76934818 Msa0226460:intron 40.0%
AGCCAGAAGACAATTATGTG+TGG - chr2_1:76934871-76934890 None:intergenic 40.0%
ACACATAATTGTCTTCTGGC+TGG + chr2_1:76934870-76934889 Msa0226460:intron 40.0%
! TGTCTTCTGGCTGGAATATT+AGG + chr2_1:76934879-76934898 Msa0226460:intron 40.0%
GAAAAAGTTGTTCACAGTGC+TGG + chr2_1:76934901-76934920 Msa0226460:intron 40.0%
TGAGCTTACCAAGCTTGATT+TGG + chr2_1:76935001-76935020 Msa0226460:intron 40.0%
GAGCTTACCAAGCTTGATTT+GGG + chr2_1:76935002-76935021 Msa0226460:intron 40.0%
!! TGTGGGTCCATTTTTGTATC+TGG + chr2_1:76935025-76935044 Msa0226460:intron 40.0%
!! GTGGGTCCATTTTTGTATCT+GGG + chr2_1:76935026-76935045 Msa0226460:intron 40.0%
CAGGTAGTGACTATGTTGAT+AGG - chr2_1:76935053-76935072 None:intergenic 40.0%
ACATTGTGAACTGATGCCAT+TGG + chr2_1:76935127-76935146 Msa0226460:intron 40.0%
AGAGGTTCAAAAAGTGAAGG+AGG - chr2_1:76935158-76935177 None:intergenic 40.0%
!!! TCCTTCACTTTTTGAACCTC+TGG + chr2_1:76935157-76935176 Msa0226460:intron 40.0%
ACCAGAGGTTCAAAAAGTGA+AGG - chr2_1:76935161-76935180 None:intergenic 40.0%
GTACATGAAAGAGGAGATAC+TGG + chr2_1:76935369-76935388 Msa0226460:CDS 40.0%
ACATGAAAGAGGAGATACTG+GGG + chr2_1:76935371-76935390 Msa0226460:CDS 40.0%
!! GAGGTTGATGTTCTCACAAA+AGG + chr2_1:76935393-76935412 Msa0226460:CDS 40.0%
TTGGCAGGAGATAACAACTA+TGG + chr2_1:76935584-76935603 Msa0226460:intron 40.0%
TGGCAGGAGATAACAACTAT+GGG + chr2_1:76935585-76935604 Msa0226460:intron 40.0%
ATAACAACTATGGGGATGAC+AGG + chr2_1:76935594-76935613 Msa0226460:CDS 40.0%
ACATTATGGGTAGAGCTGTT+GGG + chr2_1:76935657-76935676 Msa0226460:CDS 40.0%
TGCTTGAAGATACCTACTTG+TGG + chr2_1:76935800-76935819 Msa0226460:intron 40.0%
TCTATAGGAATGCAAACCGT+AGG - chr2_1:76935892-76935911 None:intergenic 40.0%
TGCTTGTATTTGTCAATGGC+AGG + chr2_1:76935957-76935976 Msa0226460:intron 40.0%
! GTTCTTACCTTATGTTGGCT+GGG + chr2_1:76935979-76935998 Msa0226460:CDS 40.0%
AGTGGAAAATCATAGCCCAT+TGG - chr2_1:76936167-76936186 None:intergenic 40.0%
!! GTTGACTTGAGAGAGAAAAG+TGG - chr2_1:76936185-76936204 None:intergenic 40.0%
TTTGCTCATGGTACTATTCG+AGG - chr2_1:76936372-76936391 None:intergenic 40.0%
! AGAAACGCAATGGGTTTCGT+TGG + chr2_1:76933327-76933346 Msa0226460:exon 45.0%
CAAATCTCTTCAGATCCGTC+AGG + chr2_1:76933368-76933387 Msa0226460:CDS 45.0%
!! AAGGCATTGATGTGCATCAC+TGG + chr2_1:76934201-76934220 Msa0226460:CDS 45.0%
CCAGAAAGAACAACGACAAC+AGG - chr2_1:76934237-76934256 None:intergenic 45.0%
CCTGTTGTCGTTGTTCTTTC+TGG + chr2_1:76934234-76934253 Msa0226460:CDS 45.0%
! CTTTCTGGAAGTATGGAACC+GGG + chr2_1:76934249-76934268 Msa0226460:CDS 45.0%
ACCTTCTCATGTTAGAGCCT+TGG + chr2_1:76934832-76934851 Msa0226460:intron 45.0%
! TCCAAGGCTCTAACATGAGA+AGG - chr2_1:76934836-76934855 None:intergenic 45.0%
GTGGATCATCTCATGATCCA+AGG - chr2_1:76934852-76934871 None:intergenic 45.0%
! AAGTTGTTCACAGTGCTGGA+TGG + chr2_1:76934905-76934924 Msa0226460:intron 45.0%
!! TACCAAGCTTGATTTGGGTG+TGG + chr2_1:76935007-76935026 Msa0226460:intron 45.0%
!! ACCAAGCTTGATTTGGGTGT+GGG + chr2_1:76935008-76935027 Msa0226460:intron 45.0%
AGTGAAGGAGGAACTTCCAA+TGG - chr2_1:76935146-76935165 None:intergenic 45.0%
AGTAGTTCAAACAGCACCAG+AGG - chr2_1:76935176-76935195 None:intergenic 45.0%
CATTTGCAAGTGGCAACTTG+TGG + chr2_1:76935212-76935231 Msa0226460:intron 45.0%
AAGTGGCAACTTGTGGAAAC+TGG + chr2_1:76935219-76935238 Msa0226460:intron 45.0%
AACTTGTGGAAACTGGAGAG+TGG + chr2_1:76935226-76935245 Msa0226460:intron 45.0%
CAACGCATGAAGATCAATCC+AGG - chr2_1:76935295-76935314 None:intergenic 45.0%
GGCAGGAGATAACAACTATG+GGG + chr2_1:76935586-76935605 Msa0226460:intron 45.0%
!! CTGCAAAGGCACCACATTAT+GGG + chr2_1:76935644-76935663 Msa0226460:CDS 45.0%
CAACAGCTCTACCCATAATG+TGG - chr2_1:76935658-76935677 None:intergenic 45.0%
CACATTATGGGTAGAGCTGT+TGG + chr2_1:76935656-76935675 Msa0226460:CDS 45.0%
CAAACCGTAGGAATTAGCGT+AGG - chr2_1:76935880-76935899 None:intergenic 45.0%
GGCAGGTTCTTACCTTATGT+TGG + chr2_1:76935974-76935993 Msa0226460:intron 45.0%
GGTTCTTACCTTATGTTGGC+TGG + chr2_1:76935978-76935997 Msa0226460:intron 45.0%
ATTGTCACCCAGCCAACATA+AGG - chr2_1:76935989-76936008 None:intergenic 45.0%
!!! TTTTTTATTTTTGTATTTTT+AGG + chr2_1:76933570-76933589 Msa0226460:intron 5.0%
!!! TTTTTATTTTTGTATTTTTA+GGG + chr2_1:76933571-76933590 Msa0226460:intron 5.0%
!! ATATAATAATTGATTAAAAT+TGG - chr2_1:76933612-76933631 None:intergenic 5.0%
!!! AATTTTAATCAATTATTATA+TGG + chr2_1:76933611-76933630 Msa0226460:intron 5.0%
!!! ATTTTAATCAATTATTATAT+GGG + chr2_1:76933612-76933631 Msa0226460:intron 5.0%
!! CAATAAAAAAAATATATATA+AGG + chr2_1:76935098-76935117 Msa0226460:intron 5.0%
GGGAAAGAGAGAACTGACCA+AGG - chr2_1:76933413-76933432 None:intergenic 50.0%
TTTGGTGAGGGGAGATTGTG+AGG + chr2_1:76933757-76933776 Msa0226460:intron 50.0%
CATGCCTGAAGCAGAACACA+AGG - chr2_1:76934154-76934173 None:intergenic 50.0%
AGTAAGGATCCAATTCGCGC+AGG + chr2_1:76934509-76934528 Msa0226460:CDS 50.0%
ACAATCTCTCCTGCGCGAAT+TGG - chr2_1:76934521-76934540 None:intergenic 50.0%
TCGGAATCTCTCGTCCCTAA+AGG - chr2_1:76934699-76934718 None:intergenic 50.0%
! TTGTTCACAGTGCTGGATGG+AGG + chr2_1:76934908-76934927 Msa0226460:intron 50.0%
! TGTTCACAGTGCTGGATGGA+GGG + chr2_1:76934909-76934928 Msa0226460:intron 50.0%
ACCCACACCCAAATCAAGCT+TGG - chr2_1:76935012-76935031 None:intergenic 50.0%
TGAAAGAGGAGATACTGGGG+AGG + chr2_1:76935374-76935393 Msa0226460:CDS 50.0%
GACAGGCTACTGTATGCTCA+TGG + chr2_1:76935611-76935630 Msa0226460:CDS 50.0%
TGTATGCTCATGGCCAGCTT+TGG + chr2_1:76935621-76935640 Msa0226460:CDS 50.0%
!! GCTGCAAAGGCACCACATTA+TGG + chr2_1:76935643-76935662 Msa0226460:CDS 50.0%
CAAGGCTAACAGCCTGAGTG+AGG - chr2_1:76933395-76933414 None:intergenic 55.0%
! CTCACTCAGGCTGTTAGCCT+TGG + chr2_1:76933393-76933412 Msa0226460:CDS 55.0%
! ATGGCCAGCTTTGGCTGCAA+AGG + chr2_1:76935630-76935649 Msa0226460:CDS 55.0%
GATCCGTCAGGTCCTCACTC+AGG + chr2_1:76933380-76933399 Msa0226460:CDS 60.0%
CAGCCTGAGTGAGGACCTGA+CGG - chr2_1:76933386-76933405 None:intergenic 60.0%
GGTGCCTTTGCAGCCAAAGC+TGG - chr2_1:76935637-76935656 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 76933181 76936513 76933181 ID=Msa0226460;Name=Msa0226460
chr2_1 mRNA 76933181 76936513 76933181 ID=Msa0226460-mRNA-1;Parent=Msa0226460;Name=Msa0226460-mRNA-1;_AED=0.04;_eAED=0.04;_QI=155|1|1|1|1|1|8|175|180
chr2_1 exon 76933181 76933414 76933181 ID=Msa0226460-mRNA-1:exon:23271;Parent=Msa0226460-mRNA-1
chr2_1 exon 76934169 76934281 76934169 ID=Msa0226460-mRNA-1:exon:23272;Parent=Msa0226460-mRNA-1
chr2_1 exon 76934485 76934556 76934485 ID=Msa0226460-mRNA-1:exon:23273;Parent=Msa0226460-mRNA-1
chr2_1 exon 76934703 76934738 76934703 ID=Msa0226460-mRNA-1:exon:23274;Parent=Msa0226460-mRNA-1
chr2_1 exon 76935369 76935414 76935369 ID=Msa0226460-mRNA-1:exon:23275;Parent=Msa0226460-mRNA-1
chr2_1 exon 76935591 76935678 76935591 ID=Msa0226460-mRNA-1:exon:23276;Parent=Msa0226460-mRNA-1
chr2_1 exon 76935979 76936036 76935979 ID=Msa0226460-mRNA-1:exon:23277;Parent=Msa0226460-mRNA-1
chr2_1 exon 76936288 76936513 76936288 ID=Msa0226460-mRNA-1:exon:23278;Parent=Msa0226460-mRNA-1
chr2_1 five_prime_UTR 76933181 76933335 76933181 ID=Msa0226460-mRNA-1:five_prime_utr;Parent=Msa0226460-mRNA-1
chr2_1 CDS 76933336 76933414 76933336 ID=Msa0226460-mRNA-1:cds;Parent=Msa0226460-mRNA-1
chr2_1 CDS 76934169 76934281 76934169 ID=Msa0226460-mRNA-1:cds;Parent=Msa0226460-mRNA-1
chr2_1 CDS 76934485 76934556 76934485 ID=Msa0226460-mRNA-1:cds;Parent=Msa0226460-mRNA-1
chr2_1 CDS 76934703 76934738 76934703 ID=Msa0226460-mRNA-1:cds;Parent=Msa0226460-mRNA-1
chr2_1 CDS 76935369 76935414 76935369 ID=Msa0226460-mRNA-1:cds;Parent=Msa0226460-mRNA-1
chr2_1 CDS 76935591 76935678 76935591 ID=Msa0226460-mRNA-1:cds;Parent=Msa0226460-mRNA-1
chr2_1 CDS 76935979 76936036 76935979 ID=Msa0226460-mRNA-1:cds;Parent=Msa0226460-mRNA-1
chr2_1 CDS 76936288 76936338 76936288 ID=Msa0226460-mRNA-1:cds;Parent=Msa0226460-mRNA-1
chr2_1 three_prime_UTR 76936339 76936513 76936339 ID=Msa0226460-mRNA-1:three_prime_utr;Parent=Msa0226460-mRNA-1
Gene Sequence

>Msa0226460

ATGGGTTTCGTTGGTGACACTGTCGATTCCATCAAATCTCTTCAGATCCGTCAGGTCCTCACTCAGGCTGTTAGCCTTGGCATGATTGTTACGTCTGCACTGATAATATGGAAGGCATTGATGTGCATCACTGGCAGTGAATCTCCTGTTGTCGTTGTTCTTTCTGGAAGTATGGAACCGGGATTCAAACGTGGGGACATCTTGTTCTTACACATGAGTAAGGATCCAATTCGCGCAGGAGAGATTGTTGTATTTAATATAGATGGACGAGAGATTCCGATCGTGCATCGTGTAATTAAGGTACATGAAAGAGGAGATACTGGGGAGGTTGATGTTCTCACAAAAGGAGATAACAACTATGGGGATGACAGGCTACTGTATGCTCATGGCCAGCTTTGGCTGCAAAGGCACCACATTATGGGTAGAGCTGTTGGGTTCTTACCTTATGTTGGCTGGGTGACAATTATCATGACTGAAAAACCTATCATCAAGTATATTCTCATTGGTGCTTTGGGGTTGCTCGTGATAACTTCAAAAGAGTAA

Protein sequence

>Msa0226460

MGFVGDTVDSIKSLQIRQVLTQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNIDGREIPIVHRVIKVHERGDTGEVDVLTKGDNNYGDDRLLYAHGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKE*