AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1331250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331250 MtrunA17_Chr4g0056921 100.000 151 0 0 1 151 1 151 5.58e-109 306
Msa1331250 MtrunA17_Chr4g0011261 94.040 151 9 0 1 151 1 151 2.54e-102 289
Msa1331250 MtrunA17_Chr5g0398801 92.715 151 11 0 1 151 1 151 1.19e-100 285
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331250 AT4G00100.1 92.053 151 12 0 1 151 1 151 7.99e-101 286
Msa1331250 AT3G60770.1 92.053 151 12 0 1 151 1 151 1.99e-100 285

Find 61 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGATCGGTGTTATTCTT+AGG 0.199752 8_4:+50776448 Msa1331250:CDS
CCAGACTGGTGGGAGCTTCT+TGG 0.208703 8_4:-50777294 None:intergenic
TGCTGTTCTGCAGTCGCTTT+TGG 0.209015 8_4:+50778037 Msa1331250:three_prime_UTR
GAGCTGCGCGCTTTGTGATT+AGG 0.236941 8_4:-50776064 None:intergenic
ATCCTTCAGATGCAGTAAAA+TGG 0.243022 8_4:-50778261 None:intergenic
AGCTGCGCGCTTTGTGATTA+GGG 0.250350 8_4:-50776063 None:intergenic
CATCTGAAGGATACATTGTT+TGG 0.295241 8_4:+50778272 Msa1331250:three_prime_UTR
TTAACTAGTTCAAGTCTTCC+AGG 0.332262 8_4:-50778105 None:intergenic
ACTTGGAGTCCTTATCCTTT+CGG 0.353333 8_4:-50777214 None:intergenic
TCAAGAAGGCAGTTTCAATT+AGG 0.353735 8_4:+50777174 Msa1331250:CDS
TACAGATCCTCAGGAATTTC+CGG 0.365553 8_4:-50777143 None:intergenic
CACAAGAATCAACCTGAACT+TGG 0.390376 8_4:-50777231 None:intergenic
GCTCAAAGCTTCAGCAATCA+TGG 0.390594 8_4:+50776083 Msa1331250:exon
TATATGCATGCTGGAAATCT+TGG 0.402365 8_4:+50778231 Msa1331250:three_prime_UTR
TCAGATCGGTGTTATTCTTA+GGG 0.403625 8_4:+50776449 Msa1331250:CDS
AGTTTCAATTAGGAAGCATT+TGG 0.418745 8_4:+50777184 Msa1331250:CDS
CCAAGAAGCTCCCACCAGTC+TGG 0.424976 8_4:+50777294 Msa1331250:CDS
TCCTTCAGATGCAGTAAAAT+GGG 0.425309 8_4:-50778260 None:intergenic
AAACTGCCTTCTTGATCAAA+TGG 0.434219 8_4:-50777166 None:intergenic
AGTGAACCAGAACTAGGGTT+TGG 0.452696 8_4:+50776006 None:intergenic
TATTTGCAAGTTTGCAAAGA+AGG 0.458801 8_4:+50776413 Msa1331250:CDS
GGAGAGGAACCGAAAGGATA+AGG 0.464398 8_4:+50777205 Msa1331250:CDS
AGGATAAGGACTCCAAGTTC+AGG 0.467196 8_4:+50777219 Msa1331250:CDS
TTTGGTTTCATGATCAGTCC+TGG 0.477897 8_4:+50778087 Msa1331250:three_prime_UTR
ATCAAATGGTACAGATCCTC+AGG 0.478375 8_4:-50777152 None:intergenic
TCACTGGCAGCAAAATCCTT+AGG 0.488968 8_4:+50776502 Msa1331250:CDS
CTCAAAGCTTCAGCAATCAT+GGG 0.490699 8_4:+50776084 Msa1331250:exon
CAAGTTCAGGTTGATTCTTG+TGG 0.500791 8_4:+50777232 Msa1331250:CDS
GTTATTCTTAGGGATTCTCA+TGG 0.504564 8_4:+50776459 Msa1331250:CDS
GCTCAAGTTAAGTTTATCAC+TGG 0.507100 8_4:+50776486 Msa1331250:CDS
CATGAGCCTTGAGGATCCTA+AGG 0.520024 8_4:-50776518 None:intergenic
ATCAACAACTGCCAGCACTT+TGG 0.526669 8_4:+50777981 Msa1331250:CDS
CCTCTGCTTTACCATACAAA+AGG 0.527826 8_4:+50776257 Msa1331250:CDS
ATTTGCAAGTTTGCAAAGAA+GGG 0.531484 8_4:+50776414 Msa1331250:CDS
GTAGAGGTCTTGAGCCATCC+TGG 0.536330 8_4:-50776286 None:intergenic
AAACATGTTGATGTTGCGTT+GGG 0.540765 8_4:+50778307 Msa1331250:three_prime_UTR
AGCATAACAAGTCAAAATCA+AGG 0.544124 8_4:-50778018 None:intergenic
AGAATAACACCGATCTGAGA+TGG 0.551609 8_4:-50776444 None:intergenic
AAAACATGTTGATGTTGCGT+TGG 0.555461 8_4:+50778306 Msa1331250:three_prime_UTR
CTTAGGATCCTCAAGGCTCA+TGG 0.558577 8_4:+50776519 Msa1331250:CDS
TCTCTAAGCAACCAAAGTGC+TGG 0.564231 8_4:-50777992 None:intergenic
GTTGATTGTAGGACTTGCAC+CGG 0.579296 8_4:+50777124 Msa1331250:intron
TCTGTACCATTTGATCAAGA+AGG 0.592710 8_4:+50777160 Msa1331250:CDS
ACTTACTACTTCCAGACTGG+TGG 0.595917 8_4:-50777305 None:intergenic
CCATACAAAAGGTCTGCACC+AGG 0.597287 8_4:+50776268 Msa1331250:CDS
ATCATGGGGCGTATGCATAG+TGG 0.599233 8_4:+50776099 Msa1331250:exon
GGTACTTACTACTTCCAGAC+TGG 0.601291 8_4:-50777308 None:intergenic
CAATTAGGAAGCATTTGGAG+AGG 0.603553 8_4:+50777189 Msa1331250:CDS
ATGGGGCGTATGCATAGTGG+CGG 0.611401 8_4:+50776102 Msa1331250:CDS
TGGGGCGTATGCATAGTGGC+GGG 0.622617 8_4:+50776103 Msa1331250:CDS
AGAACATACCATGAGCCTTG+AGG 0.623812 8_4:-50776527 None:intergenic
TGTAATAGCGAGCAAGACGG+TGG 0.633533 8_4:-50777265 None:intergenic
ACAAAAGGTCTGCACCAGGA+TGG 0.633754 8_4:+50776272 Msa1331250:CDS
CAAAATCCTTAGGATCCTCA+AGG 0.639899 8_4:+50776512 Msa1331250:CDS
CTGTTGTCATTTGAAAGATG+TGG 0.649779 8_4:+50778177 Msa1331250:three_prime_UTR
CTTACTACTTCCAGACTGGT+GGG 0.659946 8_4:-50777304 None:intergenic
GCATTTGGAGAGGAACCGAA+AGG 0.672061 8_4:+50777199 Msa1331250:CDS
GGTTTGACTCCATCTCAGAT+CGG 0.677869 8_4:+50776435 Msa1331250:CDS
TCAAAGCTTCAGCAATCATG+GGG 0.680472 8_4:+50776085 Msa1331250:exon
TCTTGTAATAGCGAGCAAGA+CGG 0.689009 8_4:-50777268 None:intergenic
ACTTGCACCGGAAATTCCTG+AGG 0.709274 8_4:+50777136 Msa1331250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACATAAAAGAAAAAAAAA+TGG - chr8_4:50777410-50777429 None:intergenic 10.0%
!! CTATATATCTAATAATATAA+TGG + chr8_4:50777704-50777723 Msa1331250:intron 10.0%
!! ATACATAAAAGAAAAAAAAA+TGG - chr8_4:50777410-50777429 None:intergenic 10.0%
!! CTATATATCTAATAATATAA+TGG + chr8_4:50777704-50777723 Msa1331250:intron 10.0%
!!! TTTTGAATTGTTTCAATTTT+TGG + chr8_4:50776214-50776233 Msa1331250:intron 15.0%
!!! GATTGATTTATTTGAATTAT+AGG + chr8_4:50776380-50776399 Msa1331250:intron 15.0%
!! TCAATATGAATAAACAAATA+GGG - chr8_4:50777332-50777351 None:intergenic 15.0%
!! ATCAATATGAATAAACAAAT+AGG - chr8_4:50777333-50777352 None:intergenic 15.0%
!! TTTATATTGAAATTCTATTC+TGG + chr8_4:50777772-50777791 Msa1331250:intron 15.0%
!!! TATGTTGAACTATTTTAATT+TGG - chr8_4:50778349-50778368 None:intergenic 15.0%
!!! TTTTGAATTGTTTCAATTTT+TGG + chr8_4:50776214-50776233 Msa1331250:intron 15.0%
!!! GATTGATTTATTTGAATTAT+AGG + chr8_4:50776380-50776399 Msa1331250:intron 15.0%
!! TCAATATGAATAAACAAATA+GGG - chr8_4:50777332-50777351 None:intergenic 15.0%
!! ATCAATATGAATAAACAAAT+AGG - chr8_4:50777333-50777352 None:intergenic 15.0%
!! TTTATATTGAAATTCTATTC+TGG + chr8_4:50777772-50777791 Msa1331250:intron 15.0%
!!! TATGTTGAACTATTTTAATT+TGG - chr8_4:50778349-50778368 None:intergenic 15.0%
!! ATTGACAAAAAAATGATGAT+GGG - chr8_4:50776334-50776353 None:intergenic 20.0%
!! TGATTTATTTGAATTATAGG+TGG + chr8_4:50776383-50776402 Msa1331250:intron 20.0%
!!! ATTTGTGTCATTATAGATTA+TGG + chr8_4:50776574-50776593 Msa1331250:intron 20.0%
!!! TTTGTGTCATTATAGATTAT+GGG + chr8_4:50776575-50776594 Msa1331250:intron 20.0%
!!! GTTTTCAGTTTATTTACATA+TGG + chr8_4:50776698-50776717 Msa1331250:intron 20.0%
!! TTATGTGAATTTAGATAAAC+AGG + chr8_4:50776923-50776942 Msa1331250:intron 20.0%
!! ATATTATAAGCACTTATGAT+AGG + chr8_4:50777028-50777047 Msa1331250:intron 20.0%
!!! TAGTAAATGAGATTTCTTTT+GGG + chr8_4:50777101-50777120 Msa1331250:intron 20.0%
!!! TAGTACTAGAAAAATGATTT+TGG + chr8_4:50777382-50777401 Msa1331250:intron 20.0%
!! AGATTATTTGATCTATTTGA+AGG + chr8_4:50777474-50777493 Msa1331250:intron 20.0%
!! ACATTTAATACAATAGCATA+GGG - chr8_4:50777511-50777530 None:intergenic 20.0%
!!! TATATAGCTTTTGTTGAAAA+TGG - chr8_4:50777691-50777710 None:intergenic 20.0%
!! CAAATTAAAATAGTTCAACA+GGG + chr8_4:50778347-50778366 Msa1331250:intron 20.0%
!! ATTGACAAAAAAATGATGAT+GGG - chr8_4:50776334-50776353 None:intergenic 20.0%
!! TGATTTATTTGAATTATAGG+TGG + chr8_4:50776383-50776402 Msa1331250:intron 20.0%
!!! ATTTGTGTCATTATAGATTA+TGG + chr8_4:50776574-50776593 Msa1331250:intron 20.0%
!!! TTTGTGTCATTATAGATTAT+GGG + chr8_4:50776575-50776594 Msa1331250:intron 20.0%
!!! GTTTTCAGTTTATTTACATA+TGG + chr8_4:50776698-50776717 Msa1331250:intron 20.0%
!! TTATGTGAATTTAGATAAAC+AGG + chr8_4:50776923-50776942 Msa1331250:intron 20.0%
!! ATATTATAAGCACTTATGAT+AGG + chr8_4:50777028-50777047 Msa1331250:intron 20.0%
!!! TAGTAAATGAGATTTCTTTT+GGG + chr8_4:50777101-50777120 Msa1331250:intron 20.0%
!!! TAGTACTAGAAAAATGATTT+TGG + chr8_4:50777382-50777401 Msa1331250:intron 20.0%
!! AGATTATTTGATCTATTTGA+AGG + chr8_4:50777474-50777493 Msa1331250:intron 20.0%
!! ACATTTAATACAATAGCATA+GGG - chr8_4:50777511-50777530 None:intergenic 20.0%
!!! TATATAGCTTTTGTTGAAAA+TGG - chr8_4:50777691-50777710 None:intergenic 20.0%
!!! TTCAATTTTTGGTTACAGTA+AGG + chr8_4:50776225-50776244 Msa1331250:intron 25.0%
!!! TCAATTTTTGGTTACAGTAA+GGG + chr8_4:50776226-50776245 Msa1331250:intron 25.0%
! AAAAATTACATCTTGTGTAG+AGG - chr8_4:50776305-50776324 None:intergenic 25.0%
! CATTGACAAAAAAATGATGA+TGG - chr8_4:50776335-50776354 None:intergenic 25.0%
! ACTACCAAATAAGTACTTAT+GGG - chr8_4:50776615-50776634 None:intergenic 25.0%
! TACTACCAAATAAGTACTTA+TGG - chr8_4:50776616-50776635 None:intergenic 25.0%
! TTATAGAAACAGTGTATTAC+AGG + chr8_4:50776900-50776919 Msa1331250:intron 25.0%
! CTTATGAAAACAGGTTATAT+TGG + chr8_4:50776951-50776970 Msa1331250:intron 25.0%
! CTAAATTAAAACTAGAGCAT+AGG - chr8_4:50777056-50777075 None:intergenic 25.0%
!! GTAGTAAATGAGATTTCTTT+TGG + chr8_4:50777100-50777119 Msa1331250:intron 25.0%
!! AGTAAATGAGATTTCTTTTG+GGG + chr8_4:50777102-50777121 Msa1331250:intron 25.0%
! ATTTAATACAATAGCATAGG+GGG - chr8_4:50777509-50777528 None:intergenic 25.0%
! CATTTAATACAATAGCATAG+GGG - chr8_4:50777510-50777529 None:intergenic 25.0%
! GACATTTAATACAATAGCAT+AGG - chr8_4:50777512-50777531 None:intergenic 25.0%
! TTAAATGTCAACCTATTTGA+AGG + chr8_4:50777523-50777542 Msa1331250:intron 25.0%
!! CATTTTTCTACTCTTTCTAT+TGG + chr8_4:50777587-50777606 Msa1331250:intron 25.0%
! GTTGAATAAAACAAAGTTTC+AGG + chr8_4:50777621-50777640 Msa1331250:intron 25.0%
! GAATGTTACATTTGATACTA+TGG + chr8_4:50777744-50777763 Msa1331250:intron 25.0%
!!! TAGAATGTTATTGCTTTTGT+CGG + chr8_4:50777880-50777899 Msa1331250:intron 25.0%
!!! TGCCAATATCTTGTATTTTT+TGG + chr8_4:50777908-50777927 Msa1331250:intron 25.0%
! CACCAAAAAATACAAGATAT+TGG - chr8_4:50777913-50777932 None:intergenic 25.0%
!!! ATTTTAAGTTATATGCATGC+TGG + chr8_4:50778222-50778241 Msa1331250:three_prime_UTR 25.0%
!!! ATACATTGTTTGGTTTTTGA+AGG + chr8_4:50778282-50778301 Msa1331250:three_prime_UTR 25.0%
! CCAAATTAAAATAGTTCAAC+AGG + chr8_4:50778346-50778365 Msa1331250:intron 25.0%
!!! TTCAATTTTTGGTTACAGTA+AGG + chr8_4:50776225-50776244 Msa1331250:intron 25.0%
!!! TCAATTTTTGGTTACAGTAA+GGG + chr8_4:50776226-50776245 Msa1331250:intron 25.0%
! AAAAATTACATCTTGTGTAG+AGG - chr8_4:50776305-50776324 None:intergenic 25.0%
! CATTGACAAAAAAATGATGA+TGG - chr8_4:50776335-50776354 None:intergenic 25.0%
! ACTACCAAATAAGTACTTAT+GGG - chr8_4:50776615-50776634 None:intergenic 25.0%
! TACTACCAAATAAGTACTTA+TGG - chr8_4:50776616-50776635 None:intergenic 25.0%
! TTATAGAAACAGTGTATTAC+AGG + chr8_4:50776900-50776919 Msa1331250:intron 25.0%
! CTTATGAAAACAGGTTATAT+TGG + chr8_4:50776951-50776970 Msa1331250:intron 25.0%
! CTAAATTAAAACTAGAGCAT+AGG - chr8_4:50777056-50777075 None:intergenic 25.0%
!! GTAGTAAATGAGATTTCTTT+TGG + chr8_4:50777100-50777119 Msa1331250:intron 25.0%
!! AGTAAATGAGATTTCTTTTG+GGG + chr8_4:50777102-50777121 Msa1331250:intron 25.0%
! ATTTAATACAATAGCATAGG+GGG - chr8_4:50777509-50777528 None:intergenic 25.0%
! CATTTAATACAATAGCATAG+GGG - chr8_4:50777510-50777529 None:intergenic 25.0%
! GACATTTAATACAATAGCAT+AGG - chr8_4:50777512-50777531 None:intergenic 25.0%
! TTAAATGTCAACCTATTTGA+AGG + chr8_4:50777523-50777542 Msa1331250:intron 25.0%
!! CATTTTTCTACTCTTTCTAT+TGG + chr8_4:50777587-50777606 Msa1331250:intron 25.0%
! GTTGAATAAAACAAAGTTTC+AGG + chr8_4:50777621-50777640 Msa1331250:intron 25.0%
! GAATGTTACATTTGATACTA+TGG + chr8_4:50777744-50777763 Msa1331250:intron 25.0%
!!! TAGAATGTTATTGCTTTTGT+CGG + chr8_4:50777880-50777899 Msa1331250:intron 25.0%
!!! TGCCAATATCTTGTATTTTT+TGG + chr8_4:50777908-50777927 Msa1331250:intron 25.0%
! CACCAAAAAATACAAGATAT+TGG - chr8_4:50777913-50777932 None:intergenic 25.0%
!!! ATTTTAAGTTATATGCATGC+TGG + chr8_4:50778222-50778241 Msa1331250:three_prime_UTR 25.0%
!!! ATACATTGTTTGGTTTTTGA+AGG + chr8_4:50778282-50778301 Msa1331250:three_prime_UTR 25.0%
TTTCACAAAAATCGTCGTTT+CGG + chr8_4:50776030-50776049 Msa1331250:five_prime_UTR 30.0%
ATGAAATTGCGATTGAGAAT+GGG - chr8_4:50776142-50776161 None:intergenic 30.0%
TATTTGCAAGTTTGCAAAGA+AGG + chr8_4:50776413-50776432 Msa1331250:CDS 30.0%
ATTTGCAAGTTTGCAAAGAA+GGG + chr8_4:50776414-50776433 Msa1331250:CDS 30.0%
TTGACCCATAAGTACTTATT+TGG + chr8_4:50776608-50776627 Msa1331250:intron 30.0%
AAGCACTTGTAAAACTGATT+AGG + chr8_4:50776816-50776835 Msa1331250:intron 30.0%
AAGCACTTGTGAAATTGATT+AGG + chr8_4:50776872-50776891 Msa1331250:intron 30.0%
!! AGTTTCAATTAGGAAGCATT+TGG + chr8_4:50777184-50777203 Msa1331250:CDS 30.0%
!! TCATTTTTCTAGTACTACCA+CGG - chr8_4:50777379-50777398 None:intergenic 30.0%
TCACTTCACACATAAAAACA+TGG - chr8_4:50777454-50777473 None:intergenic 30.0%
ACTCAACAAATCCTTCAAAT+AGG - chr8_4:50777537-50777556 None:intergenic 30.0%
TTGTTGAAAATGGATATCCA+CGG - chr8_4:50777681-50777700 None:intergenic 30.0%
TAACCTAAAATTCTAGCATC+AGG - chr8_4:50777844-50777863 None:intergenic 30.0%
GACAAAAGCAATAACATTCT+AGG - chr8_4:50777881-50777900 None:intergenic 30.0%
AGAGACAAGTCATTAATATC+AGG - chr8_4:50777951-50777970 None:intergenic 30.0%
AGCATAACAAGTCAAAATCA+AGG - chr8_4:50778021-50778040 None:intergenic 30.0%
!!! TTGCTCGAATGTAGTTTTTT+TGG + chr8_4:50778069-50778088 Msa1331250:three_prime_UTR 30.0%
TCTACAGCTGATAAAAAAGA+AGG - chr8_4:50778152-50778171 None:intergenic 30.0%
TTTCACAAAAATCGTCGTTT+CGG + chr8_4:50776030-50776049 Msa1331250:five_prime_UTR 30.0%
ATGAAATTGCGATTGAGAAT+GGG - chr8_4:50776142-50776161 None:intergenic 30.0%
TATTTGCAAGTTTGCAAAGA+AGG + chr8_4:50776413-50776432 Msa1331250:CDS 30.0%
ATTTGCAAGTTTGCAAAGAA+GGG + chr8_4:50776414-50776433 Msa1331250:CDS 30.0%
TTGACCCATAAGTACTTATT+TGG + chr8_4:50776608-50776627 Msa1331250:intron 30.0%
AAGCACTTGTAAAACTGATT+AGG + chr8_4:50776816-50776835 Msa1331250:intron 30.0%
AAGCACTTGTGAAATTGATT+AGG + chr8_4:50776872-50776891 Msa1331250:intron 30.0%
!! AGTTTCAATTAGGAAGCATT+TGG + chr8_4:50777184-50777203 Msa1331250:CDS 30.0%
!! TCATTTTTCTAGTACTACCA+CGG - chr8_4:50777379-50777398 None:intergenic 30.0%
TCACTTCACACATAAAAACA+TGG - chr8_4:50777454-50777473 None:intergenic 30.0%
ACTCAACAAATCCTTCAAAT+AGG - chr8_4:50777537-50777556 None:intergenic 30.0%
TTGTTGAAAATGGATATCCA+CGG - chr8_4:50777681-50777700 None:intergenic 30.0%
TAACCTAAAATTCTAGCATC+AGG - chr8_4:50777844-50777863 None:intergenic 30.0%
GACAAAAGCAATAACATTCT+AGG - chr8_4:50777881-50777900 None:intergenic 30.0%
AGAGACAAGTCATTAATATC+AGG - chr8_4:50777951-50777970 None:intergenic 30.0%
AGCATAACAAGTCAAAATCA+AGG - chr8_4:50778021-50778040 None:intergenic 30.0%
!!! TTGCTCGAATGTAGTTTTTT+TGG + chr8_4:50778069-50778088 Msa1331250:three_prime_UTR 30.0%
TCTACAGCTGATAAAAAAGA+AGG - chr8_4:50778152-50778171 None:intergenic 30.0%
TGAAATTGCGATTGAGAATG+GGG - chr8_4:50776141-50776160 None:intergenic 35.0%
GATGAAATTGCGATTGAGAA+TGG - chr8_4:50776143-50776162 None:intergenic 35.0%
!! TCAGATCGGTGTTATTCTTA+GGG + chr8_4:50776449-50776468 Msa1331250:CDS 35.0%
GTTATTCTTAGGGATTCTCA+TGG + chr8_4:50776459-50776478 Msa1331250:CDS 35.0%
GCTCAAGTTAAGTTTATCAC+TGG + chr8_4:50776486-50776505 Msa1331250:CDS 35.0%
TTATTTACATATGGCGTGTG+TGG + chr8_4:50776707-50776726 Msa1331250:intron 35.0%
CAGGTATAGCTTATGAAAAC+AGG + chr8_4:50776942-50776961 Msa1331250:intron 35.0%
!!! TTTCTTTTGGGGTTGATTGT+AGG + chr8_4:50777113-50777132 Msa1331250:intron 35.0%
TCTGTACCATTTGATCAAGA+AGG + chr8_4:50777160-50777179 Msa1331250:CDS 35.0%
AAACTGCCTTCTTGATCAAA+TGG - chr8_4:50777169-50777188 None:intergenic 35.0%
TCAAGAAGGCAGTTTCAATT+AGG + chr8_4:50777174-50777193 Msa1331250:CDS 35.0%
! TTGATTGTCAATGTGTTGCT+TGG + chr8_4:50777348-50777367 Msa1331250:intron 35.0%
!! CATTTTTCTAGTACTACCAC+GGG - chr8_4:50777378-50777397 None:intergenic 35.0%
GAGTAGAAAAATGTCTGACA+AGG - chr8_4:50777580-50777599 None:intergenic 35.0%
!! ATGTTATTGCTTTTGTCGGT+TGG + chr8_4:50777884-50777903 Msa1331250:intron 35.0%
TTAACTAGTTCAAGTCTTCC+AGG - chr8_4:50778108-50778127 None:intergenic 35.0%
! CTGTTGTCATTTGAAAGATG+TGG + chr8_4:50778177-50778196 Msa1331250:three_prime_UTR 35.0%
TATATGCATGCTGGAAATCT+TGG + chr8_4:50778231-50778250 Msa1331250:three_prime_UTR 35.0%
TCCTTCAGATGCAGTAAAAT+GGG - chr8_4:50778263-50778282 None:intergenic 35.0%
ATCCTTCAGATGCAGTAAAA+TGG - chr8_4:50778264-50778283 None:intergenic 35.0%
CATCTGAAGGATACATTGTT+TGG + chr8_4:50778272-50778291 Msa1331250:three_prime_UTR 35.0%
AAAACATGTTGATGTTGCGT+TGG + chr8_4:50778306-50778325 Msa1331250:three_prime_UTR 35.0%
AAACATGTTGATGTTGCGTT+GGG + chr8_4:50778307-50778326 Msa1331250:three_prime_UTR 35.0%
TGAAATTGCGATTGAGAATG+GGG - chr8_4:50776141-50776160 None:intergenic 35.0%
GATGAAATTGCGATTGAGAA+TGG - chr8_4:50776143-50776162 None:intergenic 35.0%
!! TCAGATCGGTGTTATTCTTA+GGG + chr8_4:50776449-50776468 Msa1331250:CDS 35.0%
GTTATTCTTAGGGATTCTCA+TGG + chr8_4:50776459-50776478 Msa1331250:CDS 35.0%
GCTCAAGTTAAGTTTATCAC+TGG + chr8_4:50776486-50776505 Msa1331250:CDS 35.0%
TTATTTACATATGGCGTGTG+TGG + chr8_4:50776707-50776726 Msa1331250:intron 35.0%
CAGGTATAGCTTATGAAAAC+AGG + chr8_4:50776942-50776961 Msa1331250:intron 35.0%
!!! TTTCTTTTGGGGTTGATTGT+AGG + chr8_4:50777113-50777132 Msa1331250:intron 35.0%
TCTGTACCATTTGATCAAGA+AGG + chr8_4:50777160-50777179 Msa1331250:CDS 35.0%
AAACTGCCTTCTTGATCAAA+TGG - chr8_4:50777169-50777188 None:intergenic 35.0%
TCAAGAAGGCAGTTTCAATT+AGG + chr8_4:50777174-50777193 Msa1331250:CDS 35.0%
! TTGATTGTCAATGTGTTGCT+TGG + chr8_4:50777348-50777367 Msa1331250:intron 35.0%
!! CATTTTTCTAGTACTACCAC+GGG - chr8_4:50777378-50777397 None:intergenic 35.0%
GAGTAGAAAAATGTCTGACA+AGG - chr8_4:50777580-50777599 None:intergenic 35.0%
!! ATGTTATTGCTTTTGTCGGT+TGG + chr8_4:50777884-50777903 Msa1331250:intron 35.0%
TTAACTAGTTCAAGTCTTCC+AGG - chr8_4:50778108-50778127 None:intergenic 35.0%
! CTGTTGTCATTTGAAAGATG+TGG + chr8_4:50778177-50778196 Msa1331250:three_prime_UTR 35.0%
TATATGCATGCTGGAAATCT+TGG + chr8_4:50778231-50778250 Msa1331250:three_prime_UTR 35.0%
TCCTTCAGATGCAGTAAAAT+GGG - chr8_4:50778263-50778282 None:intergenic 35.0%
ATCCTTCAGATGCAGTAAAA+TGG - chr8_4:50778264-50778283 None:intergenic 35.0%
CATCTGAAGGATACATTGTT+TGG + chr8_4:50778272-50778291 Msa1331250:three_prime_UTR 35.0%
AAAACATGTTGATGTTGCGT+TGG + chr8_4:50778306-50778325 Msa1331250:three_prime_UTR 35.0%
AAACATGTTGATGTTGCGTT+GGG + chr8_4:50778307-50778326 Msa1331250:three_prime_UTR 35.0%
CTCAAAGCTTCAGCAATCAT+GGG + chr8_4:50776084-50776103 Msa1331250:exon 40.0%
TCAAAGCTTCAGCAATCATG+GGG + chr8_4:50776085-50776104 Msa1331250:exon 40.0%
! CCTTTTGTATGGTAAAGCAG+AGG - chr8_4:50776260-50776279 None:intergenic 40.0%
CCTCTGCTTTACCATACAAA+AGG + chr8_4:50776257-50776276 Msa1331250:CDS 40.0%
AGAATAACACCGATCTGAGA+TGG - chr8_4:50776447-50776466 None:intergenic 40.0%
!! CTCAGATCGGTGTTATTCTT+AGG + chr8_4:50776448-50776467 Msa1331250:CDS 40.0%
CAAAATCCTTAGGATCCTCA+AGG + chr8_4:50776512-50776531 Msa1331250:CDS 40.0%
GCTCTCTTAATCAGTTTCAC+AGG - chr8_4:50776768-50776787 None:intergenic 40.0%
TACAGATCCTCAGGAATTTC+CGG - chr8_4:50777146-50777165 None:intergenic 40.0%
ATCAAATGGTACAGATCCTC+AGG - chr8_4:50777155-50777174 None:intergenic 40.0%
!! CAATTAGGAAGCATTTGGAG+AGG + chr8_4:50777189-50777208 Msa1331250:CDS 40.0%
ACTTGGAGTCCTTATCCTTT+CGG - chr8_4:50777217-50777236 None:intergenic 40.0%
CACAAGAATCAACCTGAACT+TGG - chr8_4:50777234-50777253 None:intergenic 40.0%
!! CAAGTTCAGGTTGATTCTTG+TGG + chr8_4:50777232-50777251 Msa1331250:CDS 40.0%
TCTTGTAATAGCGAGCAAGA+CGG - chr8_4:50777271-50777290 None:intergenic 40.0%
! ACAAAGAAGCGCATCAAACA+AGG - chr8_4:50777800-50777819 None:intergenic 40.0%
CTAAAATTCTAGCATCAGGC+AGG - chr8_4:50777840-50777859 None:intergenic 40.0%
! CTGCCTGATGCTAGAATTTT+AGG + chr8_4:50777838-50777857 Msa1331250:intron 40.0%
! TTTGGTTTCATGATCAGTCC+TGG + chr8_4:50778087-50778106 Msa1331250:three_prime_UTR 40.0%
!! ATGTGGCTGACTTCAGTTTT+TGG + chr8_4:50778194-50778213 Msa1331250:three_prime_UTR 40.0%
! ACCCATTTTACTGCATCTGA+AGG + chr8_4:50778259-50778278 Msa1331250:three_prime_UTR 40.0%
CTCAAAGCTTCAGCAATCAT+GGG + chr8_4:50776084-50776103 Msa1331250:exon 40.0%
TCAAAGCTTCAGCAATCATG+GGG + chr8_4:50776085-50776104 Msa1331250:exon 40.0%
! CCTTTTGTATGGTAAAGCAG+AGG - chr8_4:50776260-50776279 None:intergenic 40.0%
CCTCTGCTTTACCATACAAA+AGG + chr8_4:50776257-50776276 Msa1331250:CDS 40.0%
AGAATAACACCGATCTGAGA+TGG - chr8_4:50776447-50776466 None:intergenic 40.0%
!! CTCAGATCGGTGTTATTCTT+AGG + chr8_4:50776448-50776467 Msa1331250:CDS 40.0%
CAAAATCCTTAGGATCCTCA+AGG + chr8_4:50776512-50776531 Msa1331250:CDS 40.0%
GCTCTCTTAATCAGTTTCAC+AGG - chr8_4:50776768-50776787 None:intergenic 40.0%
TACAGATCCTCAGGAATTTC+CGG - chr8_4:50777146-50777165 None:intergenic 40.0%
ATCAAATGGTACAGATCCTC+AGG - chr8_4:50777155-50777174 None:intergenic 40.0%
!! CAATTAGGAAGCATTTGGAG+AGG + chr8_4:50777189-50777208 Msa1331250:CDS 40.0%
ACTTGGAGTCCTTATCCTTT+CGG - chr8_4:50777217-50777236 None:intergenic 40.0%
CACAAGAATCAACCTGAACT+TGG - chr8_4:50777234-50777253 None:intergenic 40.0%
!! CAAGTTCAGGTTGATTCTTG+TGG + chr8_4:50777232-50777251 Msa1331250:CDS 40.0%
TCTTGTAATAGCGAGCAAGA+CGG - chr8_4:50777271-50777290 None:intergenic 40.0%
! ACAAAGAAGCGCATCAAACA+AGG - chr8_4:50777800-50777819 None:intergenic 40.0%
CTAAAATTCTAGCATCAGGC+AGG - chr8_4:50777840-50777859 None:intergenic 40.0%
! CTGCCTGATGCTAGAATTTT+AGG + chr8_4:50777838-50777857 Msa1331250:intron 40.0%
! TTTGGTTTCATGATCAGTCC+TGG + chr8_4:50778087-50778106 Msa1331250:three_prime_UTR 40.0%
!! ATGTGGCTGACTTCAGTTTT+TGG + chr8_4:50778194-50778213 Msa1331250:three_prime_UTR 40.0%
! ACCCATTTTACTGCATCTGA+AGG + chr8_4:50778259-50778278 Msa1331250:three_prime_UTR 40.0%
GCTCAAAGCTTCAGCAATCA+TGG + chr8_4:50776083-50776102 Msa1331250:exon 45.0%
TTGCGATTGAGAATGGGGAA+TGG - chr8_4:50776136-50776155 None:intergenic 45.0%
GGTTTGACTCCATCTCAGAT+CGG + chr8_4:50776435-50776454 Msa1331250:CDS 45.0%
TCACTGGCAGCAAAATCCTT+AGG + chr8_4:50776502-50776521 Msa1331250:CDS 45.0%
AGAACATACCATGAGCCTTG+AGG - chr8_4:50776530-50776549 None:intergenic 45.0%
GTTGATTGTAGGACTTGCAC+CGG + chr8_4:50777124-50777143 Msa1331250:intron 45.0%
AGGATAAGGACTCCAAGTTC+AGG + chr8_4:50777219-50777238 Msa1331250:CDS 45.0%
CTTACTACTTCCAGACTGGT+GGG - chr8_4:50777307-50777326 None:intergenic 45.0%
ACTTACTACTTCCAGACTGG+TGG - chr8_4:50777308-50777327 None:intergenic 45.0%
GGTACTTACTACTTCCAGAC+TGG - chr8_4:50777311-50777330 None:intergenic 45.0%
ATCAACAACTGCCAGCACTT+TGG + chr8_4:50777981-50778000 Msa1331250:CDS 45.0%
TCTCTAAGCAACCAAAGTGC+TGG - chr8_4:50777995-50778014 None:intergenic 45.0%
GCTCAAAGCTTCAGCAATCA+TGG + chr8_4:50776083-50776102 Msa1331250:exon 45.0%
TTGCGATTGAGAATGGGGAA+TGG - chr8_4:50776136-50776155 None:intergenic 45.0%
GGTTTGACTCCATCTCAGAT+CGG + chr8_4:50776435-50776454 Msa1331250:CDS 45.0%
TCACTGGCAGCAAAATCCTT+AGG + chr8_4:50776502-50776521 Msa1331250:CDS 45.0%
AGAACATACCATGAGCCTTG+AGG - chr8_4:50776530-50776549 None:intergenic 45.0%
GTTGATTGTAGGACTTGCAC+CGG + chr8_4:50777124-50777143 Msa1331250:intron 45.0%
AGGATAAGGACTCCAAGTTC+AGG + chr8_4:50777219-50777238 Msa1331250:CDS 45.0%
CTTACTACTTCCAGACTGGT+GGG - chr8_4:50777307-50777326 None:intergenic 45.0%
ACTTACTACTTCCAGACTGG+TGG - chr8_4:50777308-50777327 None:intergenic 45.0%
GGTACTTACTACTTCCAGAC+TGG - chr8_4:50777311-50777330 None:intergenic 45.0%
ATCAACAACTGCCAGCACTT+TGG + chr8_4:50777981-50778000 Msa1331250:CDS 45.0%
TCTCTAAGCAACCAAAGTGC+TGG - chr8_4:50777995-50778014 None:intergenic 45.0%
AGCTGCGCGCTTTGTGATTA+GGG - chr8_4:50776066-50776085 None:intergenic 50.0%
ATCATGGGGCGTATGCATAG+TGG + chr8_4:50776099-50776118 Msa1331250:exon 50.0%
! CCTGGTGCAGACCTTTTGTA+TGG - chr8_4:50776271-50776290 None:intergenic 50.0%
CCATACAAAAGGTCTGCACC+AGG + chr8_4:50776268-50776287 Msa1331250:CDS 50.0%
ACAAAAGGTCTGCACCAGGA+TGG + chr8_4:50776272-50776291 Msa1331250:CDS 50.0%
CATGAGCCTTGAGGATCCTA+AGG - chr8_4:50776521-50776540 None:intergenic 50.0%
CTTAGGATCCTCAAGGCTCA+TGG + chr8_4:50776519-50776538 Msa1331250:CDS 50.0%
ACTTGCACCGGAAATTCCTG+AGG + chr8_4:50777136-50777155 Msa1331250:CDS 50.0%
GCATTTGGAGAGGAACCGAA+AGG + chr8_4:50777199-50777218 Msa1331250:CDS 50.0%
GGAGAGGAACCGAAAGGATA+AGG + chr8_4:50777205-50777224 Msa1331250:CDS 50.0%
TGTAATAGCGAGCAAGACGG+TGG - chr8_4:50777268-50777287 None:intergenic 50.0%
TGTCTTCGTGTTTGCTTCCG+TGG + chr8_4:50777661-50777680 Msa1331250:intron 50.0%
!! TGCTGTTCTGCAGTCGCTTT+TGG + chr8_4:50778037-50778056 Msa1331250:three_prime_UTR 50.0%
AGCTGCGCGCTTTGTGATTA+GGG - chr8_4:50776066-50776085 None:intergenic 50.0%
ATCATGGGGCGTATGCATAG+TGG + chr8_4:50776099-50776118 Msa1331250:exon 50.0%
! CCTGGTGCAGACCTTTTGTA+TGG - chr8_4:50776271-50776290 None:intergenic 50.0%
CCATACAAAAGGTCTGCACC+AGG + chr8_4:50776268-50776287 Msa1331250:CDS 50.0%
ACAAAAGGTCTGCACCAGGA+TGG + chr8_4:50776272-50776291 Msa1331250:CDS 50.0%
CATGAGCCTTGAGGATCCTA+AGG - chr8_4:50776521-50776540 None:intergenic 50.0%
CTTAGGATCCTCAAGGCTCA+TGG + chr8_4:50776519-50776538 Msa1331250:CDS 50.0%
ACTTGCACCGGAAATTCCTG+AGG + chr8_4:50777136-50777155 Msa1331250:CDS 50.0%
GCATTTGGAGAGGAACCGAA+AGG + chr8_4:50777199-50777218 Msa1331250:CDS 50.0%
GGAGAGGAACCGAAAGGATA+AGG + chr8_4:50777205-50777224 Msa1331250:CDS 50.0%
TGTAATAGCGAGCAAGACGG+TGG - chr8_4:50777268-50777287 None:intergenic 50.0%
TGTCTTCGTGTTTGCTTCCG+TGG + chr8_4:50777661-50777680 Msa1331250:intron 50.0%
!! TGCTGTTCTGCAGTCGCTTT+TGG + chr8_4:50778037-50778056 Msa1331250:three_prime_UTR 50.0%
GAGCTGCGCGCTTTGTGATT+AGG - chr8_4:50776067-50776086 None:intergenic 55.0%
ATGGGGCGTATGCATAGTGG+CGG + chr8_4:50776102-50776121 Msa1331250:CDS 55.0%
GTAGAGGTCTTGAGCCATCC+TGG - chr8_4:50776289-50776308 None:intergenic 55.0%
!! TGTGTTGCTTGGTTTGCCCG+TGG + chr8_4:50777359-50777378 Msa1331250:intron 55.0%
TCTAGCATCAGGCAGGCATG+TGG - chr8_4:50777833-50777852 None:intergenic 55.0%
GAGCTGCGCGCTTTGTGATT+AGG - chr8_4:50776067-50776086 None:intergenic 55.0%
ATGGGGCGTATGCATAGTGG+CGG + chr8_4:50776102-50776121 Msa1331250:CDS 55.0%
GTAGAGGTCTTGAGCCATCC+TGG - chr8_4:50776289-50776308 None:intergenic 55.0%
!! TGTGTTGCTTGGTTTGCCCG+TGG + chr8_4:50777359-50777378 Msa1331250:intron 55.0%
TCTAGCATCAGGCAGGCATG+TGG - chr8_4:50777833-50777852 None:intergenic 55.0%
TGGGGCGTATGCATAGTGGC+GGG + chr8_4:50776103-50776122 Msa1331250:CDS 60.0%
CCAGACTGGTGGGAGCTTCT+TGG - chr8_4:50777297-50777316 None:intergenic 60.0%
CCAAGAAGCTCCCACCAGTC+TGG + chr8_4:50777294-50777313 Msa1331250:CDS 60.0%
TGGGGCGTATGCATAGTGGC+GGG + chr8_4:50776103-50776122 Msa1331250:CDS 60.0%
CCAGACTGGTGGGAGCTTCT+TGG - chr8_4:50777297-50777316 None:intergenic 60.0%
CCAAGAAGCTCCCACCAGTC+TGG + chr8_4:50777294-50777313 Msa1331250:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 50776020 50778395 50776020 ID=Msa1331250;Name=Msa1331250
chr8_4 mRNA 50776020 50778395 50776020 ID=Msa1331250-mRNA-1;Parent=Msa1331250;Name=Msa1331250-mRNA-1;_AED=0.00;_eAED=0.00;_QI=82|1|1|1|0.8|0.5|6|364|151
chr8_4 exon 50776020 50776124 50776020 ID=Msa1331250-mRNA-1:exon:14846;Parent=Msa1331250-mRNA-1
chr8_4 exon 50776243 50776315 50776243 ID=Msa1331250-mRNA-1:exon:14847;Parent=Msa1331250-mRNA-1
chr8_4 exon 50776402 50776540 50776402 ID=Msa1331250-mRNA-1:exon:14848;Parent=Msa1331250-mRNA-1
chr8_4 exon 50777135 50777321 50777135 ID=Msa1331250-mRNA-1:exon:14849;Parent=Msa1331250-mRNA-1
chr8_4 exon 50777978 50778339 50777978 ID=Msa1331250-mRNA-1:exon:14850;Parent=Msa1331250-mRNA-1
chr8_4 exon 50778360 50778395 50778360 ID=Msa1331250-mRNA-1:exon:14851;Parent=Msa1331250-mRNA-1
chr8_4 five_prime_UTR 50776020 50776101 50776020 ID=Msa1331250-mRNA-1:five_prime_utr;Parent=Msa1331250-mRNA-1
chr8_4 CDS 50776102 50776124 50776102 ID=Msa1331250-mRNA-1:cds;Parent=Msa1331250-mRNA-1
chr8_4 CDS 50776243 50776315 50776243 ID=Msa1331250-mRNA-1:cds;Parent=Msa1331250-mRNA-1
chr8_4 CDS 50776402 50776540 50776402 ID=Msa1331250-mRNA-1:cds;Parent=Msa1331250-mRNA-1
chr8_4 CDS 50777135 50777321 50777135 ID=Msa1331250-mRNA-1:cds;Parent=Msa1331250-mRNA-1
chr8_4 CDS 50777978 50778011 50777978 ID=Msa1331250-mRNA-1:cds;Parent=Msa1331250-mRNA-1
chr8_4 three_prime_UTR 50778012 50778339 50778012 ID=Msa1331250-mRNA-1:three_prime_utr;Parent=Msa1331250-mRNA-1
chr8_4 three_prime_UTR 50778360 50778395 50778360 ID=Msa1331250-mRNA-1:three_prime_utr;Parent=Msa1331250-mRNA-1
Gene Sequence

>Msa1331250

ATGGGGCGTATGCATAGTGGCGGTAAGGGTATTTCATCCTCTGCTTTACCATACAAAAGGTCTGCACCAGGATGGCTCAAGACCTCTACACAAGATGTGGAAGAGACTATTTGCAAGTTTGCAAAGAAGGGTTTGACTCCATCTCAGATCGGTGTTATTCTTAGGGATTCTCATGGAATTGCTCAAGTTAAGTTTATCACTGGCAGCAAAATCCTTAGGATCCTCAAGGCTCATGGACTTGCACCGGAAATTCCTGAGGATCTGTACCATTTGATCAAGAAGGCAGTTTCAATTAGGAAGCATTTGGAGAGGAACCGAAAGGATAAGGACTCCAAGTTCAGGTTGATTCTTGTGGAGAGCAGAATCCACCGTCTTGCTCGCTATTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTACGAATCAACAACTGCCAGCACTTTGGTTGCTTAG

Protein sequence

>Msa1331250

MGRMHSGGKGISSSALPYKRSAPGWLKTSTQDVEETICKFAKKGLTPSQIGVILRDSHGIAQVKFITGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA*