Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009520 | Msa0014790 | 0.835454 | 1.662771e-56 | -8.615850e-47 |
| Msa0009520 | Msa0180290 | 0.801515 | 8.684152e-49 | -8.615850e-47 |
| Msa0009520 | Msa0254190 | 0.802910 | 4.482972e-49 | -8.615850e-47 |
| Msa0009520 | Msa0273230 | 0.802758 | 4.819009e-49 | -8.615850e-47 |
| Msa0009520 | Msa0389050 | 0.814020 | 1.906000e-51 | -8.615850e-47 |
| Msa0009520 | Msa0629960 | 0.814079 | 1.849505e-51 | -8.615850e-47 |
| Msa0009520 | Msa0867810 | 0.811614 | 6.409567e-51 | -8.615850e-47 |
| Msa0009520 | Msa0883660 | 0.801355 | 9.361443e-49 | -8.615850e-47 |
| Msa0009520 | Msa1009170 | 0.802479 | 5.502351e-49 | -8.615850e-47 |
| Msa0009520 | Msa1098350 | 0.814016 | 1.909788e-51 | -8.615850e-47 |
| Msa0009520 | Msa1098380 | 0.806565 | 7.735197e-50 | -8.615850e-47 |
| Msa0009520 | Msa1138480 | 0.823818 | 1.128585e-53 | -8.615850e-47 |
| Msa0009520 | Msa1138490 | 0.810400 | 1.174889e-50 | -8.615850e-47 |
| Msa0009520 | Msa1140460 | 0.825394 | 4.800365e-54 | -8.615850e-47 |
| Msa0009520 | Msa1182780 | 0.836608 | 8.471260e-57 | -8.615850e-47 |
| Msa0009520 | Msa1412280 | 0.807241 | 5.565553e-50 | -8.615850e-47 |
| Msa0009520 | Msa1459170 | 0.833530 | 5.059065e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009520 | MtrunA17_Chr1g0158661 | 73.004 | 263 | 49 | 7 | 1 | 248 | 1 | 256 | 1.07e-122 | 364 |
| Msa0009520 | MtrunA17_Chr1g0158631 | 68.889 | 270 | 55 | 6 | 1 | 248 | 1 | 263 | 5.97e-117 | 350 |
| Msa0009520 | MtrunA17_Chr1g0158061 | 42.857 | 224 | 84 | 9 | 38 | 235 | 33 | 238 | 4.39e-39 | 137 |
| Msa0009520 | MtrunA17_Chr1g0157881 | 36.900 | 271 | 102 | 11 | 38 | 245 | 58 | 322 | 2.25e-37 | 139 |
| Msa0009520 | MtrunA17_Chr1g0157791 | 38.824 | 255 | 104 | 10 | 13 | 234 | 3 | 238 | 5.03e-37 | 137 |
| Msa0009520 | MtrunA17_Chr1g0158041 | 39.831 | 236 | 93 | 7 | 30 | 234 | 26 | 243 | 4.92e-36 | 135 |
| Msa0009520 | MtrunA17_Chr1g0158731 | 40.639 | 219 | 105 | 7 | 38 | 243 | 41 | 247 | 8.07e-36 | 129 |
| Msa0009520 | MtrunA17_Chr3g0088331 | 39.831 | 236 | 109 | 12 | 33 | 248 | 38 | 260 | 1.79e-35 | 127 |
| Msa0009520 | MtrunA17_Chr1g0158191 | 39.184 | 245 | 106 | 9 | 16 | 229 | 4 | 236 | 4.24e-35 | 132 |
| Msa0009520 | MtrunA17_Chr1g0157861 | 35.019 | 257 | 116 | 9 | 38 | 245 | 43 | 297 | 8.40e-35 | 131 |
| Msa0009520 | MtrunA17_Chr1g0157961 | 40.724 | 221 | 94 | 7 | 38 | 235 | 41 | 247 | 1.57e-34 | 125 |
| Msa0009520 | MtrunA17_Chr1g0158411 | 39.535 | 215 | 106 | 7 | 37 | 239 | 51 | 253 | 2.60e-34 | 130 |
| Msa0009520 | MtrunA17_Chr1g0157911 | 40.260 | 231 | 108 | 9 | 38 | 245 | 40 | 263 | 2.82e-34 | 130 |
| Msa0009520 | MtrunA17_Chr1g0157991 | 41.333 | 225 | 91 | 8 | 38 | 235 | 36 | 246 | 3.14e-34 | 129 |
| Msa0009520 | MtrunA17_Chr1g0158761 | 35.398 | 226 | 121 | 6 | 16 | 234 | 9 | 216 | 1.45e-33 | 127 |
| Msa0009520 | MtrunA17_Chr1g0158151 | 39.224 | 232 | 85 | 9 | 38 | 235 | 34 | 243 | 1.55e-32 | 125 |
| Msa0009520 | MtrunA17_Chr1g0158461 | 33.582 | 268 | 120 | 10 | 13 | 235 | 19 | 273 | 7.22e-29 | 110 |
| Msa0009520 | MtrunA17_Chr6g0467711 | 36.715 | 207 | 118 | 5 | 37 | 235 | 45 | 246 | 1.73e-28 | 113 |
| Msa0009520 | MtrunA17_Chr1g0158121 | 61.905 | 84 | 29 | 1 | 38 | 118 | 37 | 120 | 4.82e-28 | 103 |
| Msa0009520 | MtrunA17_Chr1g0158331 | 34.685 | 222 | 115 | 7 | 38 | 235 | 51 | 266 | 9.67e-28 | 108 |
| Msa0009520 | MtrunA17_Chr1g0158571 | 60.825 | 97 | 30 | 3 | 152 | 248 | 2 | 90 | 7.65e-27 | 108 |
| Msa0009520 | MtrunA17_Chr1g0158301 | 29.183 | 257 | 149 | 10 | 16 | 248 | 19 | 266 | 4.99e-25 | 103 |
| Msa0009520 | MtrunA17_Chr1g0158541 | 29.963 | 267 | 138 | 11 | 16 | 248 | 17 | 268 | 1.72e-24 | 102 |
| Msa0009520 | MtrunA17_Chr1g0160761 | 33.884 | 242 | 134 | 9 | 17 | 240 | 7 | 240 | 1.64e-22 | 95.9 |
| Msa0009520 | MtrunA17_Chr1g0160701 | 32.599 | 227 | 119 | 8 | 28 | 234 | 36 | 248 | 3.51e-21 | 92.0 |
| Msa0009520 | MtrunA17_Chr1g0160711 | 31.364 | 220 | 121 | 6 | 33 | 234 | 23 | 230 | 2.46e-18 | 84.0 |
| Msa0009520 | MtrunA17_Chr1g0160661 | 31.783 | 258 | 129 | 13 | 1 | 237 | 21 | 252 | 2.87e-18 | 83.6 |
| Msa0009520 | MtrunA17_Chr1g0160721 | 30.864 | 243 | 128 | 11 | 13 | 237 | 17 | 237 | 3.37e-18 | 83.6 |
| Msa0009520 | MtrunA17_Chr1g0160561 | 31.839 | 223 | 122 | 10 | 33 | 234 | 30 | 243 | 1.07e-15 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 53 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCACAACTCTTGCATATC+TGG | 0.189605 | 1_1:+14052349 | None:intergenic |
| CAATTGGTGGGTTGAATGTT+TGG | 0.225192 | 1_1:+14052086 | None:intergenic |
| ACTTACCACGATAGCATTAT+AGG | 0.298396 | 1_1:-14051750 | Msa0009520:intron |
| GCTATGGATTTGAAATTTCC+TGG | 0.305840 | 1_1:-14051171 | Msa0009520:CDS |
| GTGAGGGAGAGAGGAGCAAT+TGG | 0.327106 | 1_1:+14052070 | None:intergenic |
| ATGGTTTCAACCTCTAACTT+TGG | 0.331944 | 1_1:-14052380 | Msa0009520:CDS |
| ACAACATATATGTAATTGTT+GGG | 0.350079 | 1_1:-14051869 | Msa0009520:CDS |
| ATGTTACTCTCACATCCTTC+TGG | 0.370866 | 1_1:-14051803 | Msa0009520:CDS |
| GTACTGTTACCACAGTGGTC+TGG | 0.396707 | 1_1:+14052215 | None:intergenic |
| TCTGAATGGTTTAGTTATGT+TGG | 0.408814 | 1_1:+14052250 | None:intergenic |
| AATTGGTGGGTTGAATGTTT+GGG | 0.419800 | 1_1:+14052087 | None:intergenic |
| CCACAGGAAGAAGAACAAAC+TGG | 0.423711 | 1_1:+14052281 | None:intergenic |
| TGTTACTCTCACATCCTTCT+GGG | 0.433436 | 1_1:-14051802 | Msa0009520:CDS |
| TAAGAAGAAGTGAGGGAGAG+AGG | 0.444522 | 1_1:+14052061 | None:intergenic |
| CACAACATATATGTAATTGT+TGG | 0.460897 | 1_1:-14051870 | Msa0009520:CDS |
| TACTGTTACCACAGTGGTCT+GGG | 0.470002 | 1_1:+14052216 | None:intergenic |
| AGGGAGAGAGGAGCAATTGG+TGG | 0.474420 | 1_1:+14052073 | None:intergenic |
| GGCTGCAATATTCCAAGTTG+TGG | 0.477417 | 1_1:+14051843 | None:intergenic |
| ACAGTATTGAAGTTGTATGA+TGG | 0.489285 | 1_1:-14052164 | Msa0009520:intron |
| ATTCAGAAGGCACTAGGCTA+TGG | 0.492318 | 1_1:-14051187 | Msa0009520:CDS |
| TACTTATCCACAGCGTTACT+AGG | 0.493264 | 1_1:+14051924 | None:intergenic |
| TAGTGGTATAAGAAGAAGTG+AGG | 0.493961 | 1_1:+14052053 | None:intergenic |
| ATCACAACTCTTGCATATCT+GGG | 0.496177 | 1_1:+14052350 | None:intergenic |
| GCAATGATCACAATGACAAA+AGG | 0.499670 | 1_1:+14051141 | None:intergenic |
| GGGAGCATATACTTACTTCT+CGG | 0.500725 | 1_1:-14051781 | Msa0009520:CDS |
| GAAGAAGAACAAACTGGTTG+TGG | 0.505145 | 1_1:+14052287 | None:intergenic |
| ATTGTTGGGGACCCACAACT+TGG | 0.505521 | 1_1:-14051855 | Msa0009520:CDS |
| ATGACAAAAGGCTTGCATCC+AGG | 0.510377 | 1_1:+14051153 | None:intergenic |
| CCAGTTTGTTCTTCTTCCTG+TGG | 0.517213 | 1_1:-14052281 | Msa0009520:CDS |
| AGTGGTATAAGAAGAAGTGA+GGG | 0.546939 | 1_1:+14052054 | None:intergenic |
| TACGAATACAGCTTCATGCA+TGG | 0.551598 | 1_1:-14051898 | Msa0009520:CDS |
| GCTGCAATATTCCAAGTTGT+GGG | 0.560363 | 1_1:+14051844 | None:intergenic |
| GGAGCATATACTTACTTCTC+GGG | 0.566052 | 1_1:-14051780 | Msa0009520:CDS |
| TGCTACCTCAAGGAACCTAC+TGG | 0.570859 | 1_1:-14051121 | Msa0009520:CDS |
| GGGAGAGAGGAGCAATTGGT+GGG | 0.574563 | 1_1:+14052074 | None:intergenic |
| TTGTGATCATTGCTACCTCA+AGG | 0.592192 | 1_1:-14051131 | Msa0009520:CDS |
| ACGAATACAGCTTCATGCAT+GGG | 0.594756 | 1_1:-14051897 | Msa0009520:CDS |
| ATCATACATCGATATTCAGA+AGG | 0.615231 | 1_1:-14051200 | Msa0009520:CDS |
| TGGTAACAGTACGTACGAGT+TGG | 0.621121 | 1_1:-14052204 | Msa0009520:CDS |
| ATCGATATTCAGAAGGCACT+AGG | 0.625875 | 1_1:-14051193 | Msa0009520:CDS |
| CAACATATATGTAATTGTTG+GGG | 0.630534 | 1_1:-14051868 | Msa0009520:CDS |
| GTAAGTATATGCTCCCCAGA+AGG | 0.638335 | 1_1:+14051788 | None:intergenic |
| GTTACTCTCACATCCTTCTG+GGG | 0.640862 | 1_1:-14051801 | Msa0009520:CDS |
| TTGTACCTATAATGCTATCG+TGG | 0.649125 | 1_1:+14051745 | None:intergenic |
| TAACACAGAATCTCGCCAGT+AGG | 0.656049 | 1_1:+14051106 | None:intergenic |
| ACATGCTTAACACGGCATTG+AGG | 0.668646 | 1_1:+14051822 | None:intergenic |
| TCTCGCCAGTAGGTTCCTTG+AGG | 0.677973 | 1_1:+14051116 | None:intergenic |
| TTATCCACAGCGTTACTAGG+TGG | 0.678496 | 1_1:+14051927 | None:intergenic |
| TGAGAGTAACATGCTTAACA+CGG | 0.691720 | 1_1:+14051814 | None:intergenic |
| AAGTCCACCTAGTAACGCTG+TGG | 0.692399 | 1_1:-14051931 | Msa0009520:CDS |
| AGGCGTACATAACTTAGACG+TGG | 0.709629 | 1_1:+14051974 | None:intergenic |
| CGTACGTACTGTTACCACAG+TGG | 0.756220 | 1_1:+14052210 | None:intergenic |
| AAACATGACCCAGACCACTG+TGG | 0.761857 | 1_1:-14052224 | Msa0009520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCAATGTTTTTTTTTTTCA+TGG | + | chr1_1:14051972-14051991 | None:intergenic | 15.0% |
| !! | ATATAATCAAATTGAATAGA+AGG | - | chr1_1:14052133-14052152 | Msa0009520:CDS | 15.0% |
| !!! | TTCAATGTTTTTTTTTTTCA+TGG | + | chr1_1:14051972-14051991 | None:intergenic | 15.0% |
| !! | ATATAATCAAATTGAATAGA+AGG | - | chr1_1:14052133-14052152 | Msa0009520:CDS | 15.0% |
| !! | ACAACATATATGTAATTGTT+GGG | - | chr1_1:14051625-14051644 | Msa0009520:intron | 20.0% |
| !! | TATAGACAAAAAAATCTACA+CGG | + | chr1_1:14052248-14052267 | None:intergenic | 20.0% |
| !! | ACAACATATATGTAATTGTT+GGG | - | chr1_1:14051625-14051644 | Msa0009520:intron | 20.0% |
| !! | TATAGACAAAAAAATCTACA+CGG | + | chr1_1:14052248-14052267 | None:intergenic | 20.0% |
| !! | GTATGAATTAGCATCTTTTT+CGG | + | chr1_1:14051475-14051494 | None:intergenic | 25.0% |
| ! | CACAACATATATGTAATTGT+TGG | - | chr1_1:14051624-14051643 | Msa0009520:intron | 25.0% |
| ! | CAACATATATGTAATTGTTG+GGG | - | chr1_1:14051626-14051645 | Msa0009520:intron | 25.0% |
| ! | ATATAGTCAAATTGAGTCAT+TGG | + | chr1_1:14051800-14051819 | None:intergenic | 25.0% |
| ! | GACGATATACAATATATTGT+CGG | - | chr1_1:14051849-14051868 | Msa0009520:CDS | 25.0% |
| !! | GTATGAATTAGCATCTTTTT+CGG | + | chr1_1:14051475-14051494 | None:intergenic | 25.0% |
| ! | CACAACATATATGTAATTGT+TGG | - | chr1_1:14051624-14051643 | Msa0009520:intron | 25.0% |
| ! | CAACATATATGTAATTGTTG+GGG | - | chr1_1:14051626-14051645 | Msa0009520:intron | 25.0% |
| ! | ATATAGTCAAATTGAGTCAT+TGG | + | chr1_1:14051800-14051819 | None:intergenic | 25.0% |
| ! | GACGATATACAATATATTGT+CGG | - | chr1_1:14051849-14051868 | Msa0009520:CDS | 25.0% |
| TCTGAATGGTTTAGTTATGT+TGG | + | chr1_1:14051247-14051266 | None:intergenic | 30.0% | |
| ! | ACAGTATTGAAGTTGTATGA+TGG | - | chr1_1:14051330-14051349 | Msa0009520:intron | 30.0% |
| !!! | CTTTTTCGGTAAAATTGTAG+TGG | + | chr1_1:14051461-14051480 | None:intergenic | 30.0% |
| ! | GAGTCATTGGTTATATAAGA+AGG | + | chr1_1:14051787-14051806 | None:intergenic | 30.0% |
| !!! | ACGTTTTGTTTCCATATCAT+AGG | + | chr1_1:14052021-14052040 | None:intergenic | 30.0% |
| CAAATTGAATAGAAGGTAAG+CGG | - | chr1_1:14052140-14052159 | Msa0009520:CDS | 30.0% | |
| AAATTGAATAGAAGGTAAGC+GGG | - | chr1_1:14052141-14052160 | Msa0009520:CDS | 30.0% | |
| !! | GTTGATTTTGTCATCCAAAA+AGG | + | chr1_1:14052187-14052206 | None:intergenic | 30.0% |
| ATCATACATCGATATTCAGA+AGG | - | chr1_1:14052294-14052313 | Msa0009520:CDS | 30.0% | |
| TCTGAATGGTTTAGTTATGT+TGG | + | chr1_1:14051247-14051266 | None:intergenic | 30.0% | |
| ! | ACAGTATTGAAGTTGTATGA+TGG | - | chr1_1:14051330-14051349 | Msa0009520:intron | 30.0% |
| !!! | CTTTTTCGGTAAAATTGTAG+TGG | + | chr1_1:14051461-14051480 | None:intergenic | 30.0% |
| ! | GAGTCATTGGTTATATAAGA+AGG | + | chr1_1:14051787-14051806 | None:intergenic | 30.0% |
| !!! | ACGTTTTGTTTCCATATCAT+AGG | + | chr1_1:14052021-14052040 | None:intergenic | 30.0% |
| CAAATTGAATAGAAGGTAAG+CGG | - | chr1_1:14052140-14052159 | Msa0009520:CDS | 30.0% | |
| AAATTGAATAGAAGGTAAGC+GGG | - | chr1_1:14052141-14052160 | Msa0009520:CDS | 30.0% | |
| !! | GTTGATTTTGTCATCCAAAA+AGG | + | chr1_1:14052187-14052206 | None:intergenic | 30.0% |
| ATCATACATCGATATTCAGA+AGG | - | chr1_1:14052294-14052313 | Msa0009520:CDS | 30.0% | |
| ATGGTTTCAACCTCTAACTT+TGG | - | chr1_1:14051114-14051133 | Msa0009520:CDS | 35.0% | |
| ATCACAACTCTTGCATATCT+GGG | + | chr1_1:14051147-14051166 | None:intergenic | 35.0% | |
| TATCACAACTCTTGCATATC+TGG | + | chr1_1:14051148-14051167 | None:intergenic | 35.0% | |
| ! | TATGTTGGACATTTTTCCAC+AGG | + | chr1_1:14051232-14051251 | None:intergenic | 35.0% |
| !!! | GGGTCATGTTTTAATCTGAA+TGG | + | chr1_1:14051261-14051280 | None:intergenic | 35.0% |
| !! | AATTGGTGGGTTGAATGTTT+GGG | + | chr1_1:14051410-14051429 | None:intergenic | 35.0% |
| AGTGGTATAAGAAGAAGTGA+GGG | + | chr1_1:14051443-14051462 | None:intergenic | 35.0% | |
| TAGTGGTATAAGAAGAAGTG+AGG | + | chr1_1:14051444-14051463 | None:intergenic | 35.0% | |
| ATGTACGCCTGTAATTTACA+TGG | - | chr1_1:14051533-14051552 | Msa0009520:intron | 35.0% | |
| GTACACTCCATGTAAATTAC+AGG | + | chr1_1:14051543-14051562 | None:intergenic | 35.0% | |
| TGAGAGTAACATGCTTAACA+CGG | + | chr1_1:14051683-14051702 | None:intergenic | 35.0% | |
| ACTTACCACGATAGCATTAT+AGG | - | chr1_1:14051744-14051763 | Msa0009520:intron | 35.0% | |
| TTGTACCTATAATGCTATCG+TGG | + | chr1_1:14051752-14051771 | None:intergenic | 35.0% | |
| ATTGAATATCTTACGACCGA+TGG | - | chr1_1:14051986-14052005 | Msa0009520:CDS | 35.0% | |
| ! | GCTATGGATTTGAAATTTCC+TGG | - | chr1_1:14052323-14052342 | Msa0009520:CDS | 35.0% |
| GCAATGATCACAATGACAAA+AGG | + | chr1_1:14052356-14052375 | None:intergenic | 35.0% | |
| ATGGTTTCAACCTCTAACTT+TGG | - | chr1_1:14051114-14051133 | Msa0009520:CDS | 35.0% | |
| ATCACAACTCTTGCATATCT+GGG | + | chr1_1:14051147-14051166 | None:intergenic | 35.0% | |
| TATCACAACTCTTGCATATC+TGG | + | chr1_1:14051148-14051167 | None:intergenic | 35.0% | |
| ! | TATGTTGGACATTTTTCCAC+AGG | + | chr1_1:14051232-14051251 | None:intergenic | 35.0% |
| !!! | GGGTCATGTTTTAATCTGAA+TGG | + | chr1_1:14051261-14051280 | None:intergenic | 35.0% |
| !! | AATTGGTGGGTTGAATGTTT+GGG | + | chr1_1:14051410-14051429 | None:intergenic | 35.0% |
| AGTGGTATAAGAAGAAGTGA+GGG | + | chr1_1:14051443-14051462 | None:intergenic | 35.0% | |
| TAGTGGTATAAGAAGAAGTG+AGG | + | chr1_1:14051444-14051463 | None:intergenic | 35.0% | |
| ATGTACGCCTGTAATTTACA+TGG | - | chr1_1:14051533-14051552 | Msa0009520:intron | 35.0% | |
| GTACACTCCATGTAAATTAC+AGG | + | chr1_1:14051543-14051562 | None:intergenic | 35.0% | |
| TGAGAGTAACATGCTTAACA+CGG | + | chr1_1:14051683-14051702 | None:intergenic | 35.0% | |
| ACTTACCACGATAGCATTAT+AGG | - | chr1_1:14051744-14051763 | Msa0009520:intron | 35.0% | |
| TTGTACCTATAATGCTATCG+TGG | + | chr1_1:14051752-14051771 | None:intergenic | 35.0% | |
| ATTGAATATCTTACGACCGA+TGG | - | chr1_1:14051986-14052005 | Msa0009520:CDS | 35.0% | |
| ! | GCTATGGATTTGAAATTTCC+TGG | - | chr1_1:14052323-14052342 | Msa0009520:CDS | 35.0% |
| GCAATGATCACAATGACAAA+AGG | + | chr1_1:14052356-14052375 | None:intergenic | 35.0% | |
| ! | GGGTTTTTCTCCAAAGTTAG+AGG | + | chr1_1:14051127-14051146 | None:intergenic | 40.0% |
| !! | GGTTGTGGATAAGTTTTGTG+TGG | + | chr1_1:14051195-14051214 | None:intergenic | 40.0% |
| GAAGAAGAACAAACTGGTTG+TGG | + | chr1_1:14051210-14051229 | None:intergenic | 40.0% | |
| !! | CAATTGGTGGGTTGAATGTT+TGG | + | chr1_1:14051411-14051430 | None:intergenic | 40.0% |
| TACTTATCCACAGCGTTACT+AGG | + | chr1_1:14051573-14051592 | None:intergenic | 40.0% | |
| TACGAATACAGCTTCATGCA+TGG | - | chr1_1:14051596-14051615 | Msa0009520:intron | 40.0% | |
| ACGAATACAGCTTCATGCAT+GGG | - | chr1_1:14051597-14051616 | Msa0009520:intron | 40.0% | |
| GCTGCAATATTCCAAGTTGT+GGG | + | chr1_1:14051653-14051672 | None:intergenic | 40.0% | |
| ATGTTACTCTCACATCCTTC+TGG | - | chr1_1:14051691-14051710 | Msa0009520:intron | 40.0% | |
| TGTTACTCTCACATCCTTCT+GGG | - | chr1_1:14051692-14051711 | Msa0009520:intron | 40.0% | |
| ! | GGGAGCATATACTTACTTCT+CGG | - | chr1_1:14051713-14051732 | Msa0009520:intron | 40.0% |
| GGAGCATATACTTACTTCTC+GGG | - | chr1_1:14051714-14051733 | Msa0009520:intron | 40.0% | |
| TATCTTACGACCGATGGAAT+AGG | - | chr1_1:14051992-14052011 | Msa0009520:CDS | 40.0% | |
| TGTCATCCAAAAAGGTCTAG+CGG | + | chr1_1:14052179-14052198 | None:intergenic | 40.0% | |
| !! | ATCGATATTCAGAAGGCACT+AGG | - | chr1_1:14052301-14052320 | Msa0009520:CDS | 40.0% |
| TTGTGATCATTGCTACCTCA+AGG | - | chr1_1:14052363-14052382 | Msa0009520:CDS | 40.0% | |
| ! | GGGTTTTTCTCCAAAGTTAG+AGG | + | chr1_1:14051127-14051146 | None:intergenic | 40.0% |
| !! | GGTTGTGGATAAGTTTTGTG+TGG | + | chr1_1:14051195-14051214 | None:intergenic | 40.0% |
| GAAGAAGAACAAACTGGTTG+TGG | + | chr1_1:14051210-14051229 | None:intergenic | 40.0% | |
| !! | CAATTGGTGGGTTGAATGTT+TGG | + | chr1_1:14051411-14051430 | None:intergenic | 40.0% |
| TACTTATCCACAGCGTTACT+AGG | + | chr1_1:14051573-14051592 | None:intergenic | 40.0% | |
| TACGAATACAGCTTCATGCA+TGG | - | chr1_1:14051596-14051615 | Msa0009520:intron | 40.0% | |
| ACGAATACAGCTTCATGCAT+GGG | - | chr1_1:14051597-14051616 | Msa0009520:intron | 40.0% | |
| GCTGCAATATTCCAAGTTGT+GGG | + | chr1_1:14051653-14051672 | None:intergenic | 40.0% | |
| ATGTTACTCTCACATCCTTC+TGG | - | chr1_1:14051691-14051710 | Msa0009520:intron | 40.0% | |
| TGTTACTCTCACATCCTTCT+GGG | - | chr1_1:14051692-14051711 | Msa0009520:intron | 40.0% | |
| ! | GGGAGCATATACTTACTTCT+CGG | - | chr1_1:14051713-14051732 | Msa0009520:intron | 40.0% |
| GGAGCATATACTTACTTCTC+GGG | - | chr1_1:14051714-14051733 | Msa0009520:intron | 40.0% | |
| TATCTTACGACCGATGGAAT+AGG | - | chr1_1:14051992-14052011 | Msa0009520:CDS | 40.0% | |
| TGTCATCCAAAAAGGTCTAG+CGG | + | chr1_1:14052179-14052198 | None:intergenic | 40.0% | |
| !! | ATCGATATTCAGAAGGCACT+AGG | - | chr1_1:14052301-14052320 | Msa0009520:CDS | 40.0% |
| TTGTGATCATTGCTACCTCA+AGG | - | chr1_1:14052363-14052382 | Msa0009520:CDS | 40.0% | |
| CCACAGGAAGAAGAACAAAC+TGG | + | chr1_1:14051216-14051235 | None:intergenic | 45.0% | |
| ! | CCAGTTTGTTCTTCTTCCTG+TGG | - | chr1_1:14051213-14051232 | Msa0009520:intron | 45.0% |
| TACTGTTACCACAGTGGTCT+GGG | + | chr1_1:14051281-14051300 | None:intergenic | 45.0% | |
| TGGTAACAGTACGTACGAGT+TGG | - | chr1_1:14051290-14051309 | Msa0009520:intron | 45.0% | |
| TAAGAAGAAGTGAGGGAGAG+AGG | + | chr1_1:14051436-14051455 | None:intergenic | 45.0% | |
| AGGCGTACATAACTTAGACG+TGG | + | chr1_1:14051523-14051542 | None:intergenic | 45.0% | |
| TTATCCACAGCGTTACTAGG+TGG | + | chr1_1:14051570-14051589 | None:intergenic | 45.0% | |
| GGCTGCAATATTCCAAGTTG+TGG | + | chr1_1:14051654-14051673 | None:intergenic | 45.0% | |
| ACATGCTTAACACGGCATTG+AGG | + | chr1_1:14051675-14051694 | None:intergenic | 45.0% | |
| GTTACTCTCACATCCTTCTG+GGG | - | chr1_1:14051693-14051712 | Msa0009520:intron | 45.0% | |
| GTAAGTATATGCTCCCCAGA+AGG | + | chr1_1:14051709-14051728 | None:intergenic | 45.0% | |
| TCATAGGCGTCCTATTCCAT+CGG | + | chr1_1:14052005-14052024 | None:intergenic | 45.0% | |
| GGAATAGGACGCCTATGATA+TGG | - | chr1_1:14052007-14052026 | Msa0009520:CDS | 45.0% | |
| !! | ATTCAGAAGGCACTAGGCTA+TGG | - | chr1_1:14052307-14052326 | Msa0009520:CDS | 45.0% |
| ATGACAAAAGGCTTGCATCC+AGG | + | chr1_1:14052344-14052363 | None:intergenic | 45.0% | |
| CCACAGGAAGAAGAACAAAC+TGG | + | chr1_1:14051216-14051235 | None:intergenic | 45.0% | |
| ! | CCAGTTTGTTCTTCTTCCTG+TGG | - | chr1_1:14051213-14051232 | Msa0009520:intron | 45.0% |
| TACTGTTACCACAGTGGTCT+GGG | + | chr1_1:14051281-14051300 | None:intergenic | 45.0% | |
| TGGTAACAGTACGTACGAGT+TGG | - | chr1_1:14051290-14051309 | Msa0009520:intron | 45.0% | |
| TAAGAAGAAGTGAGGGAGAG+AGG | + | chr1_1:14051436-14051455 | None:intergenic | 45.0% | |
| AGGCGTACATAACTTAGACG+TGG | + | chr1_1:14051523-14051542 | None:intergenic | 45.0% | |
| TTATCCACAGCGTTACTAGG+TGG | + | chr1_1:14051570-14051589 | None:intergenic | 45.0% | |
| GGCTGCAATATTCCAAGTTG+TGG | + | chr1_1:14051654-14051673 | None:intergenic | 45.0% | |
| ACATGCTTAACACGGCATTG+AGG | + | chr1_1:14051675-14051694 | None:intergenic | 45.0% | |
| GTTACTCTCACATCCTTCTG+GGG | - | chr1_1:14051693-14051712 | Msa0009520:intron | 45.0% | |
| GTAAGTATATGCTCCCCAGA+AGG | + | chr1_1:14051709-14051728 | None:intergenic | 45.0% | |
| TCATAGGCGTCCTATTCCAT+CGG | + | chr1_1:14052005-14052024 | None:intergenic | 45.0% | |
| GGAATAGGACGCCTATGATA+TGG | - | chr1_1:14052007-14052026 | Msa0009520:CDS | 45.0% | |
| !! | ATTCAGAAGGCACTAGGCTA+TGG | - | chr1_1:14052307-14052326 | Msa0009520:CDS | 45.0% |
| ATGACAAAAGGCTTGCATCC+AGG | + | chr1_1:14052344-14052363 | None:intergenic | 45.0% | |
| !!! | ATAAATATTATTTCTTTTAT+AGG | - | chr1_1:14052265-14052284 | Msa0009520:CDS | 5.0% |
| !!! | ATAAATATTATTTCTTTTAT+AGG | - | chr1_1:14052265-14052284 | Msa0009520:CDS | 5.0% |
| AAACATGACCCAGACCACTG+TGG | - | chr1_1:14051270-14051289 | Msa0009520:intron | 50.0% | |
| GTACTGTTACCACAGTGGTC+TGG | + | chr1_1:14051282-14051301 | None:intergenic | 50.0% | |
| CGTACGTACTGTTACCACAG+TGG | + | chr1_1:14051287-14051306 | None:intergenic | 50.0% | |
| AAGTCCACCTAGTAACGCTG+TGG | - | chr1_1:14051563-14051582 | Msa0009520:intron | 50.0% | |
| ATTGTTGGGGACCCACAACT+TGG | - | chr1_1:14051639-14051658 | Msa0009520:intron | 50.0% | |
| ! | ACTGCACCGCTAGACCTTTT+TGG | - | chr1_1:14052170-14052189 | Msa0009520:intron | 50.0% |
| TGCTACCTCAAGGAACCTAC+TGG | - | chr1_1:14052373-14052392 | Msa0009520:CDS | 50.0% | |
| AAACATGACCCAGACCACTG+TGG | - | chr1_1:14051270-14051289 | Msa0009520:intron | 50.0% | |
| GTACTGTTACCACAGTGGTC+TGG | + | chr1_1:14051282-14051301 | None:intergenic | 50.0% | |
| CGTACGTACTGTTACCACAG+TGG | + | chr1_1:14051287-14051306 | None:intergenic | 50.0% | |
| AAGTCCACCTAGTAACGCTG+TGG | - | chr1_1:14051563-14051582 | Msa0009520:intron | 50.0% | |
| ATTGTTGGGGACCCACAACT+TGG | - | chr1_1:14051639-14051658 | Msa0009520:intron | 50.0% | |
| ! | ACTGCACCGCTAGACCTTTT+TGG | - | chr1_1:14052170-14052189 | Msa0009520:intron | 50.0% |
| TGCTACCTCAAGGAACCTAC+TGG | - | chr1_1:14052373-14052392 | Msa0009520:CDS | 50.0% | |
| GGGAGAGAGGAGCAATTGGT+GGG | + | chr1_1:14051423-14051442 | None:intergenic | 55.0% | |
| AGGGAGAGAGGAGCAATTGG+TGG | + | chr1_1:14051424-14051443 | None:intergenic | 55.0% | |
| GTGAGGGAGAGAGGAGCAAT+TGG | + | chr1_1:14051427-14051446 | None:intergenic | 55.0% | |
| TCTCGCCAGTAGGTTCCTTG+AGG | + | chr1_1:14052381-14052400 | None:intergenic | 55.0% | |
| GGGAGAGAGGAGCAATTGGT+GGG | + | chr1_1:14051423-14051442 | None:intergenic | 55.0% | |
| AGGGAGAGAGGAGCAATTGG+TGG | + | chr1_1:14051424-14051443 | None:intergenic | 55.0% | |
| GTGAGGGAGAGAGGAGCAAT+TGG | + | chr1_1:14051427-14051446 | None:intergenic | 55.0% | |
| TCTCGCCAGTAGGTTCCTTG+AGG | + | chr1_1:14052381-14052400 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 14051114 | 14052402 | 14051114 | ID=Msa0009520;Name=Msa0009520 |
| chr1_1 | mRNA | 14051114 | 14052402 | 14051114 | ID=Msa0009520-mRNA-1;Parent=Msa0009520;Name=Msa0009520-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.33|0|1|0.33|0|4|0|248 |
| chr1_1 | exon | 14052184 | 14052402 | 14052184 | ID=Msa0009520-mRNA-1:exon:5273;Parent=Msa0009520-mRNA-1 |
| chr1_1 | exon | 14051974 | 14052174 | 14051974 | ID=Msa0009520-mRNA-1:exon:5272;Parent=Msa0009520-mRNA-1 |
| chr1_1 | exon | 14051751 | 14051958 | 14051751 | ID=Msa0009520-mRNA-1:exon:5271;Parent=Msa0009520-mRNA-1 |
| chr1_1 | exon | 14051114 | 14051229 | 14051114 | ID=Msa0009520-mRNA-1:exon:5270;Parent=Msa0009520-mRNA-1 |
| chr1_1 | CDS | 14052184 | 14052402 | 14052184 | ID=Msa0009520-mRNA-1:cds;Parent=Msa0009520-mRNA-1 |
| chr1_1 | CDS | 14051974 | 14052174 | 14051974 | ID=Msa0009520-mRNA-1:cds;Parent=Msa0009520-mRNA-1 |
| chr1_1 | CDS | 14051751 | 14051958 | 14051751 | ID=Msa0009520-mRNA-1:cds;Parent=Msa0009520-mRNA-1 |
| chr1_1 | CDS | 14051114 | 14051229 | 14051114 | ID=Msa0009520-mRNA-1:cds;Parent=Msa0009520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
