AlfalfaGEDB | Msa0867810

M. sativa cultivar zhongmu-4 / Msa0867810

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00314.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0867810	XP_013464289.1	61.538	104	40	0	2	105	553	656	2.27e-27	133
Msa0867810	XP_013464289.1	87.923	1035	109	4	143	1163	1	1033	0.0	1875

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0867810	sp\|Q39202\|RLK1_ARATH	44.513	811	388	18	393	1163	32	820	0.0	662
Msa0867810	sp\|Q39202\|RLK1_ARATH	31.690	142	81	4	2	127	330	471	3.21e-11	71.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006700	Msa0867810	0.811358	7.284963e-51	-8.615850e-47
Msa0009520	Msa0867810	0.811614	6.409567e-51	-8.615850e-47
Msa0011760	Msa0867810	0.827182	1.802181e-54	-8.615850e-47
Msa0014790	Msa0867810	0.873633	1.264101e-67	-8.615850e-47
Msa0020320	Msa0867810	0.800016	1.756093e-48	-8.615850e-47
Msa0026990	Msa0867810	0.812182	4.822499e-51	-8.615850e-47
Msa0032290	Msa0867810	0.823264	1.521049e-53	-8.615850e-47
Msa0050240	Msa0867810	0.812252	4.655772e-51	-8.615850e-47
Msa0051100	Msa0867810	0.822249	2.620496e-53	-8.615850e-47
Msa0053480	Msa0867810	0.802349	5.852253e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0867810	MtrunA17_Chr2g0311521	87.923	1035	109	4	143	1163	1	1033	0.0	1875
Msa0867810	MtrunA17_Chr2g0311521	61.538	104	40	0	2	105	553	656	2.09e-31	133
Msa0867810	MtrunA17_Chr2g0311551	84.898	1033	138	6	143	1163	1	1027	0.0	1783
Msa0867810	MtrunA17_Chr2g0311551	56.731	104	45	0	2	105	550	653	1.01e-28	124
Msa0867810	MtrunA17_Chr2g0311541	86.255	793	96	5	372	1159	2	786	0.0	1400
Msa0867810	MtrunA17_Chr2g0311541	56.604	106	44	1	2	105	311	416	1.39e-28	124
Msa0867810	MtrunA17_Chr8g0338471	48.917	785	371	13	393	1154	29	806	0.0	732
Msa0867810	MtrunA17_Chr8g0338471	38.679	106	64	1	2	106	318	423	6.00e-16	83.2
Msa0867810	MtrunA17_Chr8g0338501	48.371	798	378	13	383	1154	48	837	0.0	721
Msa0867810	MtrunA17_Chr8g0338501	36.792	106	66	1	2	106	347	452	2.00e-14	78.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0867810	AT5G24080.2	32.416	799	485	26	395	1154	32	814	7.37e-110	365
Msa0867810	AT1G34300.1	33.542	799	455	30	393	1163	27	777	2.71e-99	335
Msa0867810	AT4G32300.1	30.667	825	477	23	375	1159	12	781	3.28e-95	323
Msa0867810	AT5G24080.3	32.621	702	421	23	490	1154	1	687	4.12e-93	315
Msa0867810	AT5G24080.1	32.621	702	421	23	490	1154	1	687	4.12e-93	315
Msa0867810	AT2G19130.1	31.148	793	458	28	403	1154	33	778	2.11e-87	301
Msa0867810	AT5G35370.1	29.442	771	451	22	436	1151	80	812	6.55e-83	290
Msa0867810	AT4G00340.2	30.759	777	427	26	409	1144	34	740	1.30e-77	273
Msa0867810	AT4G21390.1	28.450	826	496	24	396	1163	32	820	8.56e-77	272
Msa0867810	AT4G00340.1	30.612	784	440	27	409	1144	34	761	1.60e-76	270

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Find 251 sgRNAs with CRISPR-Local

Find 556 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTACCACTCTCACAT+GGG	0.666091	6_1:+968857	Msa0867810:CDS
AAAATGAAACCGGTGGTTGC+TGG	0.440139	6_1:-972412	None:intergenic
AAACGACCAGTCCATTTGGT+AGG	0.633748	6_1:-972466	None:intergenic
AAACTTCATCTACAAGAGGA+TGG	0.517032	6_1:+974483	Msa0867810:CDS
AAAGTTGATACTTATAGTTT+TGG	0.355959	6_1:+976007	Msa0867810:CDS
AACCAAATAGATAGGGACTT+GGG	0.489399	6_1:-976306	None:intergenic
AACCTTGCGTTATTTGGGGC+AGG	0.488262	6_1:-972967	None:intergenic
AACGAGTCAACATTATCCTG+GGG	0.713147	6_1:+975759	Msa0867810:CDS
AACTTCATCTACAAGAGGAT+GGG	0.538380	6_1:+974484	Msa0867810:CDS
AAGAAGCTTCCACTATCTTA+TGG	0.360174	6_1:+975173	Msa0867810:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACGATTCAAACAACATGTTT+GGG	+	chr6_1:968620-968639	Msa0867810:CDS	30.0%
CAAAATTGTCCAACACTTAT+TGG	+	chr6_1:968719-968738	Msa0867810:CDS	30.0%
AATGTTGCGTAATCAGATTT+AGG	-	chr6_1:968745-968764	None:intergenic	30.0%
GAGATGATCTTCATTCAAAT+TGG	-	chr6_1:968953-968972	None:intergenic	30.0%
TATCTAGGTTAACACAATCA+AGG	+	chr6_1:969111-969130	Msa0867810:intron	30.0%
ATCTAGGTTAACACAATCAA+GGG	+	chr6_1:969112-969131	Msa0867810:intron	30.0%
AATCAAGGGGCAAATTATTT+AGG	+	chr6_1:969126-969145	Msa0867810:intron	30.0%
TAAAAATGGGTCTTGCTAAT+CGG	+	chr6_1:969619-969638	Msa0867810:intron	30.0%
GTTAAAACTGGTTGAAACTT+TGG	-	chr6_1:969809-969828	None:intergenic	30.0%
CGCTAAGAAGAAAAATGAAA+AGG	-	chr6_1:969964-969983	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	968589	976472	968589	ID=Msa0867810;Name=Msa0867810
chr6_1	mRNA	968589	976472	968589	ID=Msa0867810-mRNA-1;Parent=Msa0867810;Name=Msa0867810-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0\|0.4\|0.33\|0.66\|1\|1\|6\|127\|1163
chr6_1	exon	968589	968901	968589	ID=Msa0867810-mRNA-1:exon:244;Parent=Msa0867810-mRNA-1
chr6_1	exon	969761	969810	969761	ID=Msa0867810-mRNA-1:exon:245;Parent=Msa0867810-mRNA-1
chr6_1	exon	971783	971838	971783	ID=Msa0867810-mRNA-1:exon:246;Parent=Msa0867810-mRNA-1
chr6_1	exon	972110	972174	972110	ID=Msa0867810-mRNA-1:exon:247;Parent=Msa0867810-mRNA-1
chr6_1	exon	972317	972986	972317	ID=Msa0867810-mRNA-1:exon:248;Parent=Msa0867810-mRNA-1
chr6_1	exon	974008	976472	974008	ID=Msa0867810-mRNA-1:exon:249;Parent=Msa0867810-mRNA-1
chr6_1	CDS	968589	968901	968589	ID=Msa0867810-mRNA-1:cds;Parent=Msa0867810-mRNA-1
chr6_1	CDS	969761	969810	969761	ID=Msa0867810-mRNA-1:cds;Parent=Msa0867810-mRNA-1
chr6_1	CDS	971783	971838	971783	ID=Msa0867810-mRNA-1:cds;Parent=Msa0867810-mRNA-1
chr6_1	CDS	972110	972174	972110	ID=Msa0867810-mRNA-1:cds;Parent=Msa0867810-mRNA-1
chr6_1	CDS	972317	972986	972317	ID=Msa0867810-mRNA-1:cds;Parent=Msa0867810-mRNA-1
chr6_1	CDS	974008	976345	974008	ID=Msa0867810-mRNA-1:cds;Parent=Msa0867810-mRNA-1
chr6_1	three_prime_UTR	976346	976472	976346	ID=Msa0867810-mRNA-1:three_prime_utr;Parent=Msa0867810-mRNA-1

Gene Sequence

>Msa0867810

ATGTGTACTTCTCTAGAAGGATATTCTCTAGACGATTCAAACAACATGTTTGGGGGTTGCGAGCCAAATTCCCAAGTCAATTGTCAAGGATGGAAATATCAGGGTTCAGAAAATGATACACATGTGATGACAAAATTGTCCAACACTTATTGGCCTAAATCTGATTACGCAACATTGAGTCCTTGTAGTCTAGAAGAATGCAAGGAGTCTTGTTTGCAAGATTGCTTCTGTGTGTTGGTGTTTTTTAATGAAAGTTCTTGTTGGAAGAAAAAGCTACCACTCTCACATGGGAGAAAAGATATGCTAATAAAAGGAGCCGGTGGCGGATCTCCATGGAGACCCATGGGAGCCACTGCATCCAAAAAGGTTGTGTGTTCGATTCCCTCTGCCGATGTGAGAGCAGTGTTGGTGGGTGATCTCTTCCACATGGTTGAGCCAATGTCATTTTTGTTCTTCTTGACACTTCATCTATCAATAACTACAGTGGTATTTTCAGCTGAAATCACTATAGTTAACAATTGCGACTATACGGTGTGGCCAGCTTCAACTACTACCAGTGGAAATAGTGGAAATGCAACACCAGCAACCACCGGTTTCATTTTAAAACCCGGTGAGAATTCAACAATCACGGCACCTACCAAATGGACTGGTCGTTTTTGGGGACGGACTCTCTGCACAACAGATTCCATCTCCAAAAACTTCTCATGTGTCACAGGCGACTGTGGATCCGGCAAAGTAACATGTGATGGCCACATCGGATTAAACCCTGTGACACTGGCGGAATTCACTTTGGACAGTGTTAACAATCAAGATTTTTATGATGTCAGCTTAACAGACGGGTATAATGTCCCAATGGAAGTGATTCCGTTAGGTGGTTCTGGAAAGTGTAATAGCACGGGTTGTCCTACGGATTTGAACACGGTGTGTCCAACTGAGTTGAAAGTAATGGACAATGGGACAGTTGTGGCCTGTCAAAGTCCTTGTACTGGAAATCATTCAAATGCAAAAACTTGTGAGCCGAGTGTGTATTCTCAGATATTCAAGACGGCATGCCCTCAAGCCTTTAGCTATACGTATGATGATCAGACAAGCGAATTCACTTGTCCGGCCACCGATTACCACGTTGTTTTTTGTCCTGCCCCAAATAACGCAAGCTTAGAATCATTGGATCAAGGTGTGATTGTTGGTGAGTCACTTACTGCTGGCAGTGGCACAAGTCGTTGGCTCTCTCCTTCAGGAGATTTTGCATTTGGATTTTACAAACTTCCAAATGAGCTTTTCTTGCTGGCTATATGGTATGACAAGATACAAGATGATGCCATCATTTGGTATGCAAATGGAGACAACCCTGCTTCTAAGGGATCAAGATTGATATTAAATGATTCTCGTGGTTTGGTGCTCACTAACCCTCAAGGTTTAGAGTTATGGAGATCAGATTTCACATCAGGTACAATTTCTAATGGTCTAATGAATGATGATGGAAACTTTCAATTGCGAGACAAAAACAATGTGACATTATGGGATAGTTTCAGTCATCCTACTGACACATTAGTACCGAATCAAGTAATGAAGTTGAATGGAAATCTTTCTTCACGACAAGGATCGTTCAACTTCTCACAAGGAAGGTTTAAACTTCATCTACAAGAGGATGGGAATCTTGTGCTCAACCTTATAAATTTGCCAAGCAATTACAGTTACAGGCCTTACTACGCTTCTATGACCATTAGTGGTGATTCTAAGAATCAAACAAACGTTGGTCAGCGTTTGATATTTGACGAATCAGGTTTCTTATACATTGCAAAAAAAGGAGGGGATAACTTTTCTATCAGCAATCCAAATGGGGCATTCTCAACGGATGATTTCTACTACAAAGCAACTATTAATTTTGATGGAGTTTTCACCATTGCATTTTACCCTAAAGATCCAAAGAGAGGACAAAGTTGGGTCACTGCAAAGACTATACCAGAAAACATATGTTTGCATTCTACACTCCTAGGTGAAGGTGTATGTGGGTTTAATAGCATTTGCACCATTACAAATGACCAAAGGCCAAATTGTACCTGCCCCGACGAATATTCTCCGATTGATTCAAATAACATGTATGCTGGTTGCATACCAAATTTTCAAGTTATTTGTCAAGCAGGTGGGAATTTGGGTCCACAAGATAATCTATATACAATGAAGGATTTACCAAATATTGATTGGCCTGATTCTGATTATGAATCTATAATTCCATCTAATTTACAAGAATGTAAGGAATCATGTTTGCAAGATTGCTTATGTGTTTTGGTTCATTTTGATGAAGGTTCTTGTTTTAAAAAGAAGCTTCCACTATCTTATGGTGTAAATGATCCGGCGGTAAAAGGTATTTCTATCATGAAATTGATGAAAAGTGATCATTTGTCCTCCTTGTCAGAAGAGAAGAAAGATCATGATACTTTGGTCATTGTGATTTCAGTTCTTTTGGGAAGCTCGGTGTTTGTCATTTTAACTTTGCTTGGTGCAATATTTTTTGGGTTCCCCTACAACCTCAAGAAGATCAAAAGTAGTAGAACCAACAAAAGTGTTGTTGACAATAACTTGCGCAGTTTTAGCTTTAAGGAAATTGTGGAAGCAACTCATAACTTTAGAGAAGAATTGGGAAGAGGATCTTGTAGCATTGTCTACAAAGGAACAATAGAGATGATGATCAATGTGGCAGTTAAGAAACTAGACAAGCTGATCCAGGATAGTGATAAGGAATTTAAGACTGAAATGAGTGTGATAGGCCAAACTCATCATAGGAATCTTGTCCGTCTTCTTGGATATTGCAACGAAGGACAACATCGCATTTTGGTATATGAGTTAATGAGTAATGGCACTTTAGCAAGCTTTCTTTTCAACCCATTAAAACCAGATTGGAACCAACGAGTCAACATTATCCTGGGGATTGCAAGAGGTCTTGTTTACTTGCACGAGGGGTGTTGCACCCAAATCATCCATTGTGATATAAAGCCACAAAATATACTTCTAGATGATCAATACAATGCAAGAATTTCAGATTTTGGATTAGCAAAGTTATTGTTGATTAATCAAAGCCACACTGAAACTGGAATTAGAGGAACCAAAGGGTATGTTGCACCAGATTGGTTTAGGAGTGCACCAATAACCGCTAAAGTTGATACTTATAGTTTTGGTGTACTGTTGTTAGAGATCATTTGTTGTAGGAAAAATGCAGAGAAAGAATTTTTTGCTGAAGAAAAAGGGATTTTAACTGATTGGGCTTATGATTGCTACAAGACTAAAAGACTCGATATTCTTCTCGAAAAAGATAACGAGGCTAGCAACGACATGATGTGCTTGGAAAAGTTTGTCATGATAGCTATTTGGTGCATTCAAGAAGATCCTTCTCTTAGGCCAACAATGAAGAAGGTTTTGCAGATGTTAGAAGGAATTGTTGAAGTTGCAGTTCCCCCAAGTCCCTATCTATTTGGTTCTGTAAGTTTTAATTAG

Protein sequence

>Msa0867810

MCTSLEGYSLDDSNNMFGGCEPNSQVNCQGWKYQGSENDTHVMTKLSNTYWPKSDYATLSPCSLEECKESCLQDCFCVLVFFNESSCWKKKLPLSHGRKDMLIKGAGGGSPWRPMGATASKKVVCSIPSADVRAVLVGDLFHMVEPMSFLFFLTLHLSITTVVFSAEITIVNNCDYTVWPASTTTSGNSGNATPATTGFILKPGENSTITAPTKWTGRFWGRTLCTTDSISKNFSCVTGDCGSGKVTCDGHIGLNPVTLAEFTLDSVNNQDFYDVSLTDGYNVPMEVIPLGGSGKCNSTGCPTDLNTVCPTELKVMDNGTVVACQSPCTGNHSNAKTCEPSVYSQIFKTACPQAFSYTYDDQTSEFTCPATDYHVVFCPAPNNASLESLDQGVIVGESLTAGSGTSRWLSPSGDFAFGFYKLPNELFLLAIWYDKIQDDAIIWYANGDNPASKGSRLILNDSRGLVLTNPQGLELWRSDFTSGTISNGLMNDDGNFQLRDKNNVTLWDSFSHPTDTLVPNQVMKLNGNLSSRQGSFNFSQGRFKLHLQEDGNLVLNLINLPSNYSYRPYYASMTISGDSKNQTNVGQRLIFDESGFLYIAKKGGDNFSISNPNGAFSTDDFYYKATINFDGVFTIAFYPKDPKRGQSWVTAKTIPENICLHSTLLGEGVCGFNSICTITNDQRPNCTCPDEYSPIDSNNMYAGCIPNFQVICQAGGNLGPQDNLYTMKDLPNIDWPDSDYESIIPSNLQECKESCLQDCLCVLVHFDEGSCFKKKLPLSYGVNDPAVKGISIMKLMKSDHLSSLSEEKKDHDTLVIVISVLLGSSVFVILTLLGAIFFGFPYNLKKIKSSRTNKSVVDNNLRSFSFKEIVEATHNFREELGRGSCSIVYKGTIEMMINVAVKKLDKLIQDSDKEFKTEMSVIGQTHHRNLVRLLGYCNEGQHRILVYELMSNGTLASFLFNPLKPDWNQRVNIILGIARGLVYLHEGCCTQIIHCDIKPQNILLDDQYNARISDFGLAKLLLINQSHTETGIRGTKGYVAPDWFRSAPITAKVDTYSFGVLLLEIICCRKNAEKEFFAEEKGILTDWAYDCYKTKRLDILLEKDNEASNDMMCLEKFVMIAIWCIQEDPSLRPTMKKVLQMLEGIVEVAVPPSPYLFGSVSFN*