Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009900 | KEH37506.1 | 81.176 | 255 | 19 | 3 | 8 | 244 | 105 | 348 | 1.34e-136 | 398 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009900 | sp|B9RK42|GPC1_RICCO | 67.442 | 258 | 49 | 3 | 8 | 244 | 124 | 367 | 1.70e-114 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009900 | A0A072V798 | 81.176 | 255 | 19 | 3 | 8 | 244 | 105 | 348 | 6.42e-137 | 398 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009790 | Msa0009900 | 0.879866 | 8.781440e-70 | -8.615850e-47 |
| Msa0009900 | Msa0150660 | 0.960996 | 3.415472e-119 | -8.615850e-47 |
| Msa0009900 | Msa0274030 | 0.966605 | 3.817751e-126 | -8.615850e-47 |
| Msa0009900 | Msa1076870 | 0.872424 | 3.215315e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009900 | MtrunA17_Chr2g0300041 | 81.176 | 255 | 19 | 3 | 8 | 244 | 107 | 350 | 1.27e-140 | 398 |
| Msa0009900 | MtrunA17_Chr4g0070761 | 67.249 | 229 | 46 | 3 | 8 | 218 | 108 | 325 | 6.53e-104 | 304 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009900 | AT5G35460.1 | 66.400 | 250 | 48 | 4 | 8 | 235 | 121 | 356 | 1.23e-107 | 316 |
| Msa0009900 | AT5G35460.2 | 66.400 | 250 | 48 | 4 | 8 | 235 | 121 | 356 | 1.23e-107 | 316 |
Find 38 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATGTACATGGCTGTTTC+TGG | 0.136807 | 1_1:-14748838 | Msa0009900:intron |
| ATGCAGAAACCTTCAGTATT+TGG | 0.172838 | 1_1:+14748178 | None:intergenic |
| GAAAACCACAGACAATTTAT+AGG | 0.268132 | 1_1:+14748200 | None:intergenic |
| TAGGATTTATCTTCGATATA+AGG | 0.285131 | 1_1:+14748861 | None:intergenic |
| ATATGCATTTGATTCAATAT+TGG | 0.292604 | 1_1:-14750211 | Msa0009900:CDS |
| TAGCATGGGCATTGATTGTT+TGG | 0.342012 | 1_1:-14750389 | Msa0009900:CDS |
| CTCTGGTCGCATAGCTTCTA+AGG | 0.350803 | 1_1:+14748908 | None:intergenic |
| GGCGCTTAAGTGGCTTGCTC+GGG | 0.354857 | 1_1:-14748308 | Msa0009900:CDS |
| TTAATGTTCATTCTTCTTCA+AGG | 0.358672 | 1_1:-14748270 | Msa0009900:CDS |
| TCTTCTTCAAGGAATGTTTA+CGG | 0.360145 | 1_1:-14748259 | Msa0009900:CDS |
| TGGCGCTTAAGTGGCTTGCT+CGG | 0.392782 | 1_1:-14748309 | Msa0009900:CDS |
| TATGATTGATCATTTAGTAT+TGG | 0.423860 | 1_1:+14748066 | None:intergenic |
| AAACAGCCATGTACATAGAT+AGG | 0.426768 | 1_1:+14748842 | None:intergenic |
| ACTCTTGCGGCAGCTCCCTC+TGG | 0.428537 | 1_1:+14748891 | None:intergenic |
| GATTGTTTGGCGTTGCAGTT+TGG | 0.439343 | 1_1:-14750376 | Msa0009900:CDS |
| CGCATAGCTTCTAAGGTCTC+AGG | 0.442564 | 1_1:+14748915 | None:intergenic |
| GTTAGAGGTTATGCCTAGGC+AGG | 0.483117 | 1_1:-14748130 | Msa0009900:CDS |
| AATTTATAGGACAAGAATAT+CGG | 0.491436 | 1_1:+14748213 | None:intergenic |
| AACATGTGGTGGCGCTTAAG+TGG | 0.500643 | 1_1:-14748318 | Msa0009900:CDS |
| AGAACATACCTGGTAAAAGA+TGG | 0.526879 | 1_1:+14750316 | None:intergenic |
| CTTGTCCTATAAATTGTCTG+TGG | 0.529231 | 1_1:-14748205 | Msa0009900:CDS |
| GCCTAGGCAGGTTATTCTCA+AGG | 0.551205 | 1_1:-14748118 | Msa0009900:CDS |
| TCCTTGAGAATAACCTGCCT+AGG | 0.556675 | 1_1:+14748117 | None:intergenic |
| ACAATCAATGCCCATGCTAA+CGG | 0.568226 | 1_1:+14750393 | None:intergenic |
| ATAAATCCTATCTATGTACA+TGG | 0.579385 | 1_1:-14748848 | Msa0009900:CDS |
| GTTTCTGCATCAGTGTGGAA+TGG | 0.583826 | 1_1:-14748165 | Msa0009900:CDS |
| GAAGAATGAACATTAACAAG+CGG | 0.588184 | 1_1:+14748277 | None:intergenic |
| GAGCTGCCGCAAGAGTTACA+TGG | 0.601793 | 1_1:-14748884 | Msa0009900:CDS |
| AATGTTTACGGTGGCAACGA+TGG | 0.607699 | 1_1:-14748247 | Msa0009900:CDS |
| GCGCTTAAGTGGCTTGCTCG+GGG | 0.610530 | 1_1:-14748307 | Msa0009900:CDS |
| AGAAAGCAAATAACATGTGG+TGG | 0.624496 | 1_1:-14748329 | Msa0009900:CDS |
| ATAAGGCCATGTAACTCTTG+CGG | 0.630543 | 1_1:+14748878 | None:intergenic |
| TTAGAAGCTATGCGACCAGA+GGG | 0.634042 | 1_1:-14748906 | Msa0009900:CDS |
| CTTAGAAGCTATGCGACCAG+AGG | 0.642060 | 1_1:-14748907 | Msa0009900:CDS |
| CTCAGAAAGCAAATAACATG+TGG | 0.642551 | 1_1:-14748332 | Msa0009900:CDS |
| TGAAGGTTTCTGCATCAGTG+TGG | 0.682254 | 1_1:-14748170 | Msa0009900:CDS |
| TCTTCAAGGAATGTTTACGG+TGG | 0.685251 | 1_1:-14748256 | Msa0009900:CDS |
| TTATGATGATGACAGCGATG+AGG | 0.704276 | 1_1:+14750689 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAATATTAAAAATTGT+AGG | + | chr1_1:14748476-14748495 | None:intergenic | 10.0% |
| !!! | TTATTAATCTTACATTTTTT+AGG | - | chr1_1:14750394-14750413 | Msa0009900:CDS | 10.0% |
| !!! | TATTAATCTTACATTTTTTA+GGG | - | chr1_1:14750395-14750414 | Msa0009900:CDS | 10.0% |
| !! | ATATGCATTTGATTCAATAT+TGG | - | chr1_1:14748554-14748573 | Msa0009900:intron | 20.0% |
| !! | TCTATGTGAACAAAAATTAA+TGG | + | chr1_1:14748693-14748712 | None:intergenic | 20.0% |
| !!! | ACACCAAATAATTTTTAAGA+AGG | - | chr1_1:14748762-14748781 | Msa0009900:intron | 20.0% |
| !!! | GATTTATATATTAGTTTCCA+GGG | + | chr1_1:14748804-14748823 | None:intergenic | 20.0% |
| !!! | AGATTTATATATTAGTTTCC+AGG | + | chr1_1:14748805-14748824 | None:intergenic | 20.0% |
| !!! | TTATTTTCTTCTATTTATGC+TGG | - | chr1_1:14749095-14749114 | Msa0009900:intron | 20.0% |
| !!! | GCAAATTTACAATTTTACAT+TGG | - | chr1_1:14749348-14749367 | Msa0009900:intron | 20.0% |
| !!! | TTTACAATTTTACATTGGTT+TGG | - | chr1_1:14749353-14749372 | Msa0009900:intron | 20.0% |
| !!! | GATCAAAATTTTCCATTTTA+AGG | + | chr1_1:14749379-14749398 | None:intergenic | 20.0% |
| !! | GGTATGATGAATATTATAAA+TGG | + | chr1_1:14749777-14749796 | None:intergenic | 20.0% |
| !! | TAATATTCATCATACCTTAA+TGG | - | chr1_1:14749781-14749800 | Msa0009900:intron | 20.0% |
| !! | AATTTATAGGACAAGAATAT+CGG | + | chr1_1:14750555-14750574 | None:intergenic | 20.0% |
| !! | TATGATTGATCATTTAGTAT+TGG | + | chr1_1:14750702-14750721 | None:intergenic | 20.0% |
| ! | GTAAACCAAAAAGATTGTAT+TGG | + | chr1_1:14748205-14748224 | None:intergenic | 25.0% |
| ! | CATTCTTTGGATAAAAAAGA+AGG | + | chr1_1:14748227-14748246 | None:intergenic | 25.0% |
| ! | AGAAAAAACTTCTCATTCTT+TGG | + | chr1_1:14748240-14748259 | None:intergenic | 25.0% |
| !!! | AAAGAATGAGAAGTTTTTTC+TGG | - | chr1_1:14748239-14748258 | Msa0009900:CDS | 25.0% |
| ! | ATGTGTGATTTATTTAAGTG+CGG | - | chr1_1:14748340-14748359 | Msa0009900:CDS | 25.0% |
| !! | ATTTATTTAAGTGCGGTTTT+AGG | - | chr1_1:14748347-14748366 | Msa0009900:CDS | 25.0% |
| !! | TTTATTTAAGTGCGGTTTTA+GGG | - | chr1_1:14748348-14748367 | Msa0009900:CDS | 25.0% |
| !! | ATAACCTTTTGCAAAATCAT+TGG | - | chr1_1:14748509-14748528 | Msa0009900:intron | 25.0% |
| ! | AAAGCATATAATATCTCTGA+TGG | - | chr1_1:14748593-14748612 | Msa0009900:intron | 25.0% |
| !! | TTCTACTATCATGATTTTTG+TGG | - | chr1_1:14748642-14748661 | Msa0009900:intron | 25.0% |
| !!! | AAAATTAATGGACTAAGCTA+AGG | + | chr1_1:14748681-14748700 | None:intergenic | 25.0% |
| ! | CCTCCTTCTTAAAAATTATT+TGG | + | chr1_1:14748768-14748787 | None:intergenic | 25.0% |
| !!! | CCAAATAATTTTTAAGAAGG+AGG | - | chr1_1:14748765-14748784 | Msa0009900:intron | 25.0% |
| !! | GACTTTTACTACTAAACTTA+AGG | + | chr1_1:14748894-14748913 | None:intergenic | 25.0% |
| ! | TTCGCACTTAAAAGTTTATA+AGG | - | chr1_1:14749037-14749056 | Msa0009900:intron | 25.0% |
| ! | TTTACGTGTTGCAATATATT+TGG | - | chr1_1:14749426-14749445 | Msa0009900:intron | 25.0% |
| ! | AATATATTTGGTATCTGGTT+TGG | - | chr1_1:14749438-14749457 | Msa0009900:intron | 25.0% |
| ! | AAAAGAAAACATCCAAAATC+AGG | + | chr1_1:14749512-14749531 | None:intergenic | 25.0% |
| ! | AATTGTACAACATGAAACAT+GGG | + | chr1_1:14749616-14749635 | None:intergenic | 25.0% |
| ! | TAATTGTACAACATGAAACA+TGG | + | chr1_1:14749617-14749636 | None:intergenic | 25.0% |
| ! | TATCAAATATTGTCATGCTT+AGG | + | chr1_1:14749689-14749708 | None:intergenic | 25.0% |
| ! | TATTTGATAGATGTTACCAT+TGG | - | chr1_1:14749700-14749719 | Msa0009900:intron | 25.0% |
| ! | TAGGATTTATCTTCGATATA+AGG | + | chr1_1:14749907-14749926 | None:intergenic | 25.0% |
| ! | ATAAATCCTATCTATGTACA+TGG | - | chr1_1:14749917-14749936 | Msa0009900:intron | 25.0% |
| ! | TTATTTATCATTGCTTCAAG+TGG | - | chr1_1:14750206-14750225 | Msa0009900:CDS | 25.0% |
| !!! | GAAGGTTTTAAATAATAGTC+AGG | + | chr1_1:14750310-14750329 | None:intergenic | 25.0% |
| ! | TTAATGTTCATTCTTCTTCA+AGG | - | chr1_1:14750495-14750514 | Msa0009900:intron | 25.0% |
| AACTATTGTTCATGTGTTTC+AGG | - | chr1_1:14748164-14748183 | Msa0009900:CDS | 30.0% | |
| ! | CTATGCCAATACAATCTTTT+TGG | - | chr1_1:14748197-14748216 | Msa0009900:CDS | 30.0% |
| !! | AAAATCATTGGCTTCTACTA+TGG | - | chr1_1:14748521-14748540 | Msa0009900:intron | 30.0% |
| ! | ATTTTTGTGGTATCTAGCAT+TGG | - | chr1_1:14748655-14748674 | Msa0009900:intron | 30.0% |
| ! | ATATATTAGTTTCCAGGGTT+TGG | + | chr1_1:14748799-14748818 | None:intergenic | 30.0% |
| ! | TTCAAAGTTGATCACGTATA+CGG | + | chr1_1:14748916-14748935 | None:intergenic | 30.0% |
| !!! | TTGATCATAAGTTTTGAAGC+TGG | - | chr1_1:14748967-14748986 | Msa0009900:intron | 30.0% |
| AATGAAAACTACCAGTGTAT+TGG | + | chr1_1:14749161-14749180 | None:intergenic | 30.0% | |
| !! | TTTGATGTTGATTTCAACCA+TGG | - | chr1_1:14749183-14749202 | Msa0009900:intron | 30.0% |
| GATCAATGTTATTCAGTATC+TGG | - | chr1_1:14749395-14749414 | Msa0009900:intron | 30.0% | |
| GTTGCAATATATTTGGTATC+TGG | - | chr1_1:14749433-14749452 | Msa0009900:intron | 30.0% | |
| TGTCAACAAACAATAGGATT+TGG | + | chr1_1:14749483-14749502 | None:intergenic | 30.0% | |
| ACAGATAAGTAGTAATGCAA+GGG | + | chr1_1:14749548-14749567 | None:intergenic | 30.0% | |
| TGTCAGATGTAAAACCATTT+AGG | - | chr1_1:14749565-14749584 | Msa0009900:intron | 30.0% | |
| GTCAGATGTAAAACCATTTA+GGG | - | chr1_1:14749566-14749585 | Msa0009900:intron | 30.0% | |
| TCAGATGTAAAACCATTTAG+GGG | - | chr1_1:14749567-14749586 | Msa0009900:intron | 30.0% | |
| ATATTGTTAAGACCCCTAAA+TGG | + | chr1_1:14749582-14749601 | None:intergenic | 30.0% | |
| ATTGTACAACATGAAACATG+GGG | + | chr1_1:14749615-14749634 | None:intergenic | 30.0% | |
| TAGTAAAGAAAACCAAATCC+TGG | + | chr1_1:14749816-14749835 | None:intergenic | 30.0% | |
| ! | TGGTTTTCTTTACTATTCGA+TGG | - | chr1_1:14749821-14749840 | Msa0009900:intron | 30.0% |
| ! | TTTTCTTTACTATTCGATGG+TGG | - | chr1_1:14749824-14749843 | Msa0009900:intron | 30.0% |
| GATCTCTTAAAAACCGTTAT+CGG | + | chr1_1:14750014-14750033 | None:intergenic | 30.0% | |
| TAGACCAATAGAGTTTCAAA+AGG | - | chr1_1:14750099-14750118 | Msa0009900:intron | 30.0% | |
| CTTGATATTGTAGAGAAAAG+CGG | + | chr1_1:14750166-14750185 | None:intergenic | 30.0% | |
| ! | GCTTTTCTCTACAATATCAA+GGG | - | chr1_1:14750165-14750184 | Msa0009900:intron | 30.0% |
| TACAAAAACAGTTTGAAGGA+AGG | + | chr1_1:14750328-14750347 | None:intergenic | 30.0% | |
| ACTGTACAAAAACAGTTTGA+AGG | + | chr1_1:14750332-14750351 | None:intergenic | 30.0% | |
| GAAGAATGAACATTAACAAG+CGG | + | chr1_1:14750491-14750510 | None:intergenic | 30.0% | |
| TCTTCTTCAAGGAATGTTTA+CGG | - | chr1_1:14750506-14750525 | Msa0009900:CDS | 30.0% | |
| GAAAACCACAGACAATTTAT+AGG | + | chr1_1:14750568-14750587 | None:intergenic | 30.0% | |
| GCTAGGATGTCAAATTACTA+AGG | + | chr1_1:14748298-14748317 | None:intergenic | 35.0% | |
| ! | GTTCTTATCCATCTTTTACC+AGG | - | chr1_1:14748441-14748460 | Msa0009900:intron | 35.0% |
| AGAACATACCTGGTAAAAGA+TGG | + | chr1_1:14748452-14748471 | None:intergenic | 35.0% | |
| AATTGTAGGTAGAACATACC+TGG | + | chr1_1:14748462-14748481 | None:intergenic | 35.0% | |
| ! | GAAGCCAATGATTTTGCAAA+AGG | + | chr1_1:14748516-14748535 | None:intergenic | 35.0% |
| !! | AGATATTTGTTATCCCACGA+AGG | - | chr1_1:14748716-14748735 | Msa0009900:intron | 35.0% |
| !! | AATTTTTAAGAAGGAGGTCC+AGG | - | chr1_1:14748771-14748790 | Msa0009900:intron | 35.0% |
| !! | ATTTTTAAGAAGGAGGTCCA+GGG | - | chr1_1:14748772-14748791 | Msa0009900:intron | 35.0% |
| GTTACACATAAACACACAGA+AGG | + | chr1_1:14749064-14749083 | None:intergenic | 35.0% | |
| !!! | TATTGGTGGTGTTTTTTGTG+GGG | + | chr1_1:14749144-14749163 | None:intergenic | 35.0% |
| !!! | GTATTGGTGGTGTTTTTTGT+GGG | + | chr1_1:14749145-14749164 | None:intergenic | 35.0% |
| !!! | TGTATTGGTGGTGTTTTTTG+TGG | + | chr1_1:14749146-14749165 | None:intergenic | 35.0% |
| AAAAAACACCACCAATACAC+TGG | - | chr1_1:14749147-14749166 | Msa0009900:intron | 35.0% | |
| TTGTCAAACTCTTGAGTTTG+CGG | - | chr1_1:14749224-14749243 | Msa0009900:intron | 35.0% | |
| TCGAGTAAACTCTGATAACA+TGG | - | chr1_1:14749306-14749325 | Msa0009900:intron | 35.0% | |
| !! | ACATTGGTTTGGCCTTAAAA+TGG | - | chr1_1:14749364-14749383 | Msa0009900:intron | 35.0% |
| TTGGTTCAACAACTAGTAGT+AGG | + | chr1_1:14749464-14749483 | None:intergenic | 35.0% | |
| GACAGATAAGTAGTAATGCA+AGG | + | chr1_1:14749549-14749568 | None:intergenic | 35.0% | |
| GATAGATGTTACCATTGGAA+TGG | - | chr1_1:14749705-14749724 | Msa0009900:intron | 35.0% | |
| CTATCACAAATCCATTCCAA+TGG | + | chr1_1:14749719-14749738 | None:intergenic | 35.0% | |
| GGATGCATAAAGTAACGTAA+AGG | + | chr1_1:14749756-14749775 | None:intergenic | 35.0% | |
| CCTGGAGAAAAAATCCATTA+AGG | + | chr1_1:14749798-14749817 | None:intergenic | 35.0% | |
| !!! | CCTTAATGGATTTTTTCTCC+AGG | - | chr1_1:14749795-14749814 | Msa0009900:intron | 35.0% |
| !!! | TGGATTTTTTCTCCAGGATT+TGG | - | chr1_1:14749801-14749820 | Msa0009900:intron | 35.0% |
| AAACAGCCATGTACATAGAT+AGG | + | chr1_1:14749926-14749945 | None:intergenic | 35.0% | |
| CACAAGGTGTAAACTACTAA+GGG | + | chr1_1:14749955-14749974 | None:intergenic | 35.0% | |
| GAGAAGAGATGATTACCTAT+AGG | + | chr1_1:14750052-14750071 | None:intergenic | 35.0% | |
| GGTAATCATCTCTTCTCATT+CGG | - | chr1_1:14750055-14750074 | Msa0009900:intron | 35.0% | |
| ! | TGGTCTAAAGCAAACATAAC+TGG | + | chr1_1:14750086-14750105 | None:intergenic | 35.0% |
| ACCAATAGAGTTTCAAAAGG+TGG | - | chr1_1:14750102-14750121 | Msa0009900:intron | 35.0% | |
| !!! | ACCACCTTTTGAAACTCTAT+TGG | + | chr1_1:14750106-14750125 | None:intergenic | 35.0% |
| ! | CGCTTTTCTCTACAATATCA+AGG | - | chr1_1:14750164-14750183 | Msa0009900:intron | 35.0% |
| GCTTGATCTTATAACCTCAA+GGG | + | chr1_1:14750259-14750278 | None:intergenic | 35.0% | |
| AGCTTGATCTTATAACCTCA+AGG | + | chr1_1:14750260-14750279 | None:intergenic | 35.0% | |
| !!! | GTACAGTATGTGTTTTAGAG+TGG | - | chr1_1:14750345-14750364 | Msa0009900:CDS | 35.0% |
| CTCAGAAAGCAAATAACATG+TGG | - | chr1_1:14750433-14750452 | Msa0009900:intron | 35.0% | |
| AGAAAGCAAATAACATGTGG+TGG | - | chr1_1:14750436-14750455 | Msa0009900:intron | 35.0% | |
| CTTGTCCTATAAATTGTCTG+TGG | - | chr1_1:14750560-14750579 | Msa0009900:CDS | 35.0% | |
| ! | TGTGGTTTTCCAAATACTGA+AGG | - | chr1_1:14750578-14750597 | Msa0009900:CDS | 35.0% |
| ATGCAGAAACCTTCAGTATT+TGG | + | chr1_1:14750590-14750609 | None:intergenic | 35.0% | |
| ! | TTTTGTTAGAGGTTATGCCT+AGG | - | chr1_1:14750631-14750650 | Msa0009900:intron | 35.0% |
| ! | TTATGATGATGACAGCGATG+AGG | + | chr1_1:14748079-14748098 | None:intergenic | 40.0% |
| TCATCGCTGTCATCATCATA+AGG | - | chr1_1:14748078-14748097 | Msa0009900:CDS | 40.0% | |
| TTGACATCCTAGCACAAGAA+TGG | - | chr1_1:14748305-14748324 | Msa0009900:CDS | 40.0% | |
| CAATGAACCATTCTTGTGCT+AGG | + | chr1_1:14748315-14748334 | None:intergenic | 40.0% | |
| CTAGCACAAGAATGGTTCAT+TGG | - | chr1_1:14748313-14748332 | Msa0009900:CDS | 40.0% | |
| ACAATCAATGCCCATGCTAA+CGG | + | chr1_1:14748375-14748394 | None:intergenic | 40.0% | |
| !! | TAGCATGGGCATTGATTGTT+TGG | - | chr1_1:14748376-14748395 | Msa0009900:CDS | 40.0% |
| CAAGAGATTCATGCTAGACA+AGG | - | chr1_1:14748865-14748884 | Msa0009900:CDS | 40.0% | |
| GAAAACTACCAGTGTATTGG+TGG | + | chr1_1:14749158-14749177 | None:intergenic | 40.0% | |
| TTCAACCATGGTAGTAGTCA+TGG | - | chr1_1:14749195-14749214 | Msa0009900:intron | 40.0% | |
| GAAAACATCCAAAATCAGGC+AGG | + | chr1_1:14749508-14749527 | None:intergenic | 40.0% | |
| ATAAGGCCATGTAACTCTTG+CGG | + | chr1_1:14749890-14749909 | None:intergenic | 40.0% | |
| ! | TCTATGTACATGGCTGTTTC+TGG | - | chr1_1:14749927-14749946 | Msa0009900:intron | 40.0% |
| CCACAAGGTGTAAACTACTA+AGG | + | chr1_1:14749956-14749975 | None:intergenic | 40.0% | |
| CCTTAGTAGTTTACACCTTG+TGG | - | chr1_1:14749953-14749972 | Msa0009900:intron | 40.0% | |
| GTAGTATAGAACTTGCCACA+AGG | + | chr1_1:14749971-14749990 | None:intergenic | 40.0% | |
| TCAATGTCTTACGCCGATAA+CGG | - | chr1_1:14749998-14750017 | Msa0009900:intron | 40.0% | |
| CTATAGGAAGTCATGACTTC+AGG | + | chr1_1:14750036-14750055 | None:intergenic | 40.0% | |
| CTGAAGTCATGACTTCCTAT+AGG | - | chr1_1:14750034-14750053 | Msa0009900:intron | 40.0% | |
| TTACAACTGAGCTGAACTCA+TGG | - | chr1_1:14750281-14750300 | Msa0009900:intron | 40.0% | |
| TCTTCAAGGAATGTTTACGG+TGG | - | chr1_1:14750509-14750528 | Msa0009900:CDS | 40.0% | |
| ! | TGGAGCAAGCTTTTTGTTAG+AGG | - | chr1_1:14750620-14750639 | Msa0009900:intron | 40.0% |
| !! | GGTCTGCTTTTCATTTGCTG+AGG | - | chr1_1:14748260-14748279 | Msa0009900:CDS | 45.0% |
| !!! | GTTTTAGGGTCCGTTAGCAT+GGG | - | chr1_1:14748362-14748381 | Msa0009900:CDS | 45.0% |
| GATTGTTTGGCGTTGCAGTT+TGG | - | chr1_1:14748389-14748408 | Msa0009900:CDS | 45.0% | |
| GACAACCATGACTACTACCA+TGG | + | chr1_1:14749203-14749222 | None:intergenic | 45.0% | |
| TCAAACTCTTGAGTTTGCGG+TGG | - | chr1_1:14749227-14749246 | Msa0009900:intron | 45.0% | |
| CAGGCGTGTCAACAAACAAT+AGG | + | chr1_1:14749489-14749508 | None:intergenic | 45.0% | |
| TTAGAAGCTATGCGACCAGA+GGG | - | chr1_1:14749859-14749878 | Msa0009900:intron | 45.0% | |
| GGCGTAAGACATTGACAACA+AGG | + | chr1_1:14749993-14750012 | None:intergenic | 45.0% | |
| TGTGGTTCCAATCACGATTG+TGG | + | chr1_1:14750129-14750148 | None:intergenic | 45.0% | |
| AATGTTTACGGTGGCAACGA+TGG | - | chr1_1:14750518-14750537 | Msa0009900:CDS | 45.0% | |
| TGAAGGTTTCTGCATCAGTG+TGG | - | chr1_1:14750595-14750614 | Msa0009900:intron | 45.0% | |
| GTTTCTGCATCAGTGTGGAA+TGG | - | chr1_1:14750600-14750619 | Msa0009900:intron | 45.0% | |
| TCCTTGAGAATAACCTGCCT+AGG | + | chr1_1:14750651-14750670 | None:intergenic | 45.0% | |
| !!! | GGTTTTAGGGTCCGTTAGCA+TGG | - | chr1_1:14748361-14748380 | Msa0009900:CDS | 50.0% |
| GTTATCCCACGAAGGTAGCT+TGG | - | chr1_1:14748724-14748743 | Msa0009900:intron | 50.0% | |
| ACCAACCAAGCTACCTTCGT+GGG | + | chr1_1:14748732-14748751 | None:intergenic | 50.0% | |
| ! | TTGACACGCCTGCCTGATTT+TGG | - | chr1_1:14749497-14749516 | Msa0009900:intron | 50.0% |
| !! | CGCATAGCTTCTAAGGTCTC+AGG | + | chr1_1:14749853-14749872 | None:intergenic | 50.0% |
| CTCTGGTCGCATAGCTTCTA+AGG | + | chr1_1:14749860-14749879 | None:intergenic | 50.0% | |
| CTTAGAAGCTATGCGACCAG+AGG | - | chr1_1:14749858-14749877 | Msa0009900:intron | 50.0% | |
| AGGTGGTCCACAATCGTGAT+TGG | - | chr1_1:14750119-14750138 | Msa0009900:intron | 50.0% | |
| GGAACCACACTAGCTGTAGT+TGG | - | chr1_1:14750140-14750159 | Msa0009900:intron | 50.0% | |
| TTTGCAACTGTCGTCCCTTG+AGG | - | chr1_1:14750242-14750261 | Msa0009900:intron | 50.0% | |
| ! | AACATGTGGTGGCGCTTAAG+TGG | - | chr1_1:14750447-14750466 | Msa0009900:intron | 50.0% |
| GTTAGAGGTTATGCCTAGGC+AGG | - | chr1_1:14750635-14750654 | Msa0009900:intron | 50.0% | |
| GCCTAGGCAGGTTATTCTCA+AGG | - | chr1_1:14750647-14750666 | Msa0009900:intron | 50.0% | |
| TCCCACGAAGGTAGCTTGGT+TGG | - | chr1_1:14748728-14748747 | Msa0009900:intron | 55.0% | |
| CACCAACCAAGCTACCTTCG+TGG | + | chr1_1:14748733-14748752 | None:intergenic | 55.0% | |
| AGTTTCCAGGGTTTGGACCC+TGG | + | chr1_1:14748792-14748811 | None:intergenic | 55.0% | |
| GAGCTGCCGCAAGAGTTACA+TGG | - | chr1_1:14749881-14749900 | Msa0009900:intron | 55.0% | |
| !! | TGGCGCTTAAGTGGCTTGCT+CGG | - | chr1_1:14750456-14750475 | Msa0009900:intron | 55.0% |
| GCGGCCAACTACAGCTAGTG+TGG | + | chr1_1:14750147-14750166 | None:intergenic | 60.0% | |
| !! | GGCGCTTAAGTGGCTTGCTC+GGG | - | chr1_1:14750457-14750476 | Msa0009900:intron | 60.0% |
| !! | GCGCTTAAGTGGCTTGCTCG+GGG | - | chr1_1:14750458-14750477 | Msa0009900:intron | 60.0% |
| GAGGTCCAGGGTCCAAACCC+TGG | - | chr1_1:14748784-14748803 | Msa0009900:intron | 65.0% | |
| ACTCTTGCGGCAGCTCCCTC+TGG | + | chr1_1:14749877-14749896 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 14748065 | 14750722 | 14748065 | ID=Msa0009900;Name=Msa0009900 |
| chr1_1 | mRNA | 14748065 | 14750722 | 14748065 | ID=Msa0009900-mRNA-1;Parent=Msa0009900;Name=Msa0009900-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|0.66|1|1|6|0|244 |
| chr1_1 | exon | 14750702 | 14750722 | 14750702 | ID=Msa0009900-mRNA-1:exon:5473;Parent=Msa0009900-mRNA-1 |
| chr1_1 | exon | 14750506 | 14750601 | 14750506 | ID=Msa0009900-mRNA-1:exon:5472;Parent=Msa0009900-mRNA-1 |
| chr1_1 | exon | 14750325 | 14750418 | 14750325 | ID=Msa0009900-mRNA-1:exon:5471;Parent=Msa0009900-mRNA-1 |
| chr1_1 | exon | 14750203 | 14750234 | 14750203 | ID=Msa0009900-mRNA-1:exon:5470;Parent=Msa0009900-mRNA-1 |
| chr1_1 | exon | 14748839 | 14748970 | 14748839 | ID=Msa0009900-mRNA-1:exon:5469;Parent=Msa0009900-mRNA-1 |
| chr1_1 | exon | 14748065 | 14748424 | 14748065 | ID=Msa0009900-mRNA-1:exon:5468;Parent=Msa0009900-mRNA-1 |
| chr1_1 | CDS | 14750702 | 14750722 | 14750702 | ID=Msa0009900-mRNA-1:cds;Parent=Msa0009900-mRNA-1 |
| chr1_1 | CDS | 14750506 | 14750601 | 14750506 | ID=Msa0009900-mRNA-1:cds;Parent=Msa0009900-mRNA-1 |
| chr1_1 | CDS | 14750325 | 14750418 | 14750325 | ID=Msa0009900-mRNA-1:cds;Parent=Msa0009900-mRNA-1 |
| chr1_1 | CDS | 14750203 | 14750234 | 14750203 | ID=Msa0009900-mRNA-1:cds;Parent=Msa0009900-mRNA-1 |
| chr1_1 | CDS | 14748839 | 14748970 | 14748839 | ID=Msa0009900-mRNA-1:cds;Parent=Msa0009900-mRNA-1 |
| chr1_1 | CDS | 14748065 | 14748424 | 14748065 | ID=Msa0009900-mRNA-1:cds;Parent=Msa0009900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
