Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009790 | sp|B9RK42|GPC1_RICCO | 65.116 | 172 | 24 | 2 | 27 | 162 | 187 | 358 | 3.83e-70 | 220 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009790 | Msa0009900 | 0.879866 | 8.781440e-70 | -8.615850e-47 |
| Msa0009790 | Msa0079130 | 0.801529 | 8.627490e-49 | -8.615850e-47 |
| Msa0009790 | Msa0104800 | 0.813773 | 2.160173e-51 | -8.615850e-47 |
| Msa0009790 | Msa0150660 | 0.861998 | 6.914074e-64 | -8.615850e-47 |
| Msa0009790 | Msa0151180 | 0.803670 | 3.121119e-49 | -8.615850e-47 |
| Msa0009790 | Msa0190530 | 0.822745 | 2.009758e-53 | -8.615850e-47 |
| Msa0009790 | Msa0274030 | 0.875778 | 2.356987e-68 | -8.615850e-47 |
| Msa0009790 | Msa0319170 | 0.802688 | 4.981130e-49 | -8.615850e-47 |
| Msa0009790 | Msa0401560 | 0.804659 | 1.942817e-49 | -8.615850e-47 |
| Msa0009790 | Msa0721280 | 0.807015 | 6.214043e-50 | -8.615850e-47 |
| Msa0009790 | Msa0894710 | 0.802548 | 5.325606e-49 | -8.615850e-47 |
| Msa0009790 | Msa0962840 | 0.801201 | 1.006812e-48 | -8.615850e-47 |
| Msa0009790 | Msa1063420 | 0.815918 | 7.225294e-52 | -8.615850e-47 |
| Msa0009790 | Msa1076870 | 0.822339 | 2.497141e-53 | -8.615850e-47 |
| Msa0009790 | Msa1270660 | 0.835997 | 1.210930e-56 | -8.615850e-47 |
| Msa0009790 | Msa1270730 | 0.835883 | 1.294934e-56 | -8.615850e-47 |
| Msa0009790 | Msa1335230 | 0.826252 | 3.004381e-54 | -8.615850e-47 |
| Msa0009790 | Msa1343250 | 0.802247 | 6.140649e-49 | -8.615850e-47 |
| Msa0009790 | Msa1353470 | 0.802159 | 6.404561e-49 | -8.615850e-47 |
| Msa0009790 | Msa1357890 | 0.806098 | 9.698976e-50 | -8.615850e-47 |
| Msa0009790 | Msa1398090 | 0.802940 | 4.419769e-49 | -8.615850e-47 |
| Msa0009790 | Msa1407600 | 0.816214 | 6.206993e-52 | -8.615850e-47 |
| Msa0009790 | Msa1423820 | 0.831833 | 1.334311e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009790 | MtrunA17_Chr2g0300041 | 76.440 | 191 | 3 | 3 | 17 | 171 | 166 | 350 | 3.78e-92 | 271 |
| Msa0009790 | MtrunA17_Chr4g0070761 | 60.000 | 165 | 24 | 3 | 17 | 145 | 167 | 325 | 8.32e-60 | 189 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009790 | AT5G35460.1 | 61.272 | 173 | 30 | 3 | 27 | 162 | 184 | 356 | 1.26e-63 | 200 |
| Msa0009790 | AT5G35460.2 | 61.272 | 173 | 30 | 3 | 27 | 162 | 184 | 356 | 1.26e-63 | 200 |
Find 35 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCAGAAACCTTCAGTATT+TGG | 0.172838 | 1_1:-14640381 | None:intergenic |
| CCTTTATTGTGGCACGATTT+AGG | 0.254871 | 1_1:-14637868 | None:intergenic |
| ATCTATGTACATGGCTGTTC+TGG | 0.263942 | 1_1:+14639721 | Msa0009790:CDS |
| GAAAACCACAGACAATTTAT+AGG | 0.268132 | 1_1:-14640359 | None:intergenic |
| TAGGATTTATCTTCGATATA+AGG | 0.285131 | 1_1:-14639699 | None:intergenic |
| CCTAAATCGTGCCACAATAA+AGG | 0.341262 | 1_1:+14637868 | Msa0009790:CDS |
| CTCTGGTCGCATAGCTTCTA+AGG | 0.350803 | 1_1:-14639652 | None:intergenic |
| GGCGCTTAAGTGGCTTGCTC+GGG | 0.354857 | 1_1:+14640251 | Msa0009790:CDS |
| TTAATGTTCATTCTTCTTCA+AGG | 0.358672 | 1_1:+14640289 | Msa0009790:CDS |
| TCTTCTTCAAGGAATGTTTA+CGG | 0.360145 | 1_1:+14640300 | Msa0009790:CDS |
| TGGCGCTTAAGTGGCTTGCT+CGG | 0.392782 | 1_1:+14640250 | Msa0009790:CDS |
| TATGATTGATCATTTAGTAT+TGG | 0.423860 | 1_1:-14640493 | None:intergenic |
| ACTCTTGCGGCAGCTCCCTC+TGG | 0.428537 | 1_1:-14639669 | None:intergenic |
| CGCATAGCTTCTAAGGTCTC+AGG | 0.442564 | 1_1:-14639645 | None:intergenic |
| GAACAGCCATGTACATAGAT+AGG | 0.450573 | 1_1:-14639718 | None:intergenic |
| GTTAGAGGTTATGCCTAGGC+AGG | 0.483117 | 1_1:+14640429 | Msa0009790:CDS |
| AATTTATAGGACAAGAATAT+CGG | 0.491436 | 1_1:-14640346 | None:intergenic |
| AACATGTGGTGGCGCTTAAG+TGG | 0.500643 | 1_1:+14640241 | Msa0009790:CDS |
| CTTGTCCTATAAATTGTCTG+TGG | 0.529231 | 1_1:+14640354 | Msa0009790:CDS |
| ACCATGTACTACCTTTATTG+TGG | 0.537126 | 1_1:-14637879 | None:intergenic |
| GCCTAGGCAGGTTATTCTCA+AGG | 0.551205 | 1_1:+14640441 | Msa0009790:CDS |
| TCCTTGAGAATAACCTGCCT+AGG | 0.556675 | 1_1:-14640442 | None:intergenic |
| ATAAATCCTATCTATGTACA+TGG | 0.579385 | 1_1:+14639712 | Msa0009790:CDS |
| GTTTCTGCATCAGTGTGGAA+TGG | 0.583826 | 1_1:+14640394 | Msa0009790:CDS |
| GAAGAATGAACATTAACAAG+CGG | 0.588184 | 1_1:-14640282 | None:intergenic |
| GAGCTGCCGCAAGAGTTACA+TGG | 0.601793 | 1_1:+14639676 | Msa0009790:CDS |
| AATGTTTACGGTGGCAACGA+TGG | 0.607699 | 1_1:+14640312 | Msa0009790:CDS |
| GCGCTTAAGTGGCTTGCTCG+GGG | 0.610530 | 1_1:+14640252 | Msa0009790:CDS |
| AGAAAGCAAATAACATGTGG+TGG | 0.624496 | 1_1:+14640230 | Msa0009790:CDS |
| ATAAGGCCATGTAACTCTTG+CGG | 0.630543 | 1_1:-14639682 | None:intergenic |
| TTAGAAGCTATGCGACCAGA+GGG | 0.634042 | 1_1:+14639654 | Msa0009790:CDS |
| CTTAGAAGCTATGCGACCAG+AGG | 0.642060 | 1_1:+14639653 | Msa0009790:CDS |
| CTCAGAAAGCAAATAACATG+TGG | 0.642551 | 1_1:+14640227 | Msa0009790:CDS |
| TGAAGGTTTCTGCATCAGTG+TGG | 0.682254 | 1_1:+14640389 | Msa0009790:CDS |
| TCTTCAAGGAATGTTTACGG+TGG | 0.685251 | 1_1:+14640303 | Msa0009790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTAATCTTACATTTTTT+AGG | + | chr1_1:14640188-14640207 | Msa0009790:intron | 10.0% |
| !!! | TATTAATCTTACATTTTTTA+GGG | + | chr1_1:14640189-14640208 | Msa0009790:intron | 10.0% |
| !!! | TATAATCATCCTTTTTTTTT+AGG | - | chr1_1:14637991-14638010 | None:intergenic | 15.0% |
| !! | AATATTAGGAAAATTATCAA+TGG | - | chr1_1:14638256-14638275 | None:intergenic | 15.0% |
| !! | ACTAGAAATTCACTATTTAA+CGG | + | chr1_1:14638036-14638055 | Msa0009790:intron | 20.0% |
| !! | TTGCATACATGATTAATATT+AGG | - | chr1_1:14638270-14638289 | None:intergenic | 20.0% |
| !! | CTTAAAAAAGAAAAGAATGA+AGG | - | chr1_1:14638333-14638352 | None:intergenic | 20.0% |
| !! | AACAAAAAAAGCAAATGATA+TGG | - | chr1_1:14638423-14638442 | None:intergenic | 20.0% |
| !!! | ATATCATTTGCTTTTTTTGT+TGG | + | chr1_1:14638422-14638441 | Msa0009790:intron | 20.0% |
| !!! | TTATTTTCTTCTATTTATGC+TGG | + | chr1_1:14638893-14638912 | Msa0009790:intron | 20.0% |
| !!! | AGCAAATTTACATTTTACAT+TGG | + | chr1_1:14639144-14639163 | Msa0009790:intron | 20.0% |
| !!! | ATTTACATTTTACATTGGTT+TGG | + | chr1_1:14639149-14639168 | Msa0009790:intron | 20.0% |
| !!! | GATCAAAATTTTCCATTTTA+AGG | - | chr1_1:14639175-14639194 | None:intergenic | 20.0% |
| !! | GGTATGATGAATATTATAAA+TGG | - | chr1_1:14639573-14639592 | None:intergenic | 20.0% |
| !! | TAATATTCATCATACCTTAA+TGG | + | chr1_1:14639577-14639596 | Msa0009790:intron | 20.0% |
| !! | AATTTATAGGACAAGAATAT+CGG | - | chr1_1:14640349-14640368 | None:intergenic | 20.0% |
| !! | TATGATTGATCATTTAGTAT+TGG | - | chr1_1:14640496-14640515 | None:intergenic | 20.0% |
| !! | AAAAATCATAGCACGATTTT+GGG | - | chr1_1:14637923-14637942 | None:intergenic | 25.0% |
| !! | TAAAAATCATAGCACGATTT+TGG | - | chr1_1:14637924-14637943 | None:intergenic | 25.0% |
| ! | AAAACTCTATTTACATGTCT+TGG | - | chr1_1:14638227-14638246 | None:intergenic | 25.0% |
| !! | AAGACATGTAAATAGAGTTT+TGG | + | chr1_1:14638226-14638245 | Msa0009790:intron | 25.0% |
| !! | AGACATGTAAATAGAGTTTT+GGG | + | chr1_1:14638227-14638246 | Msa0009790:intron | 25.0% |
| ! | AAAAAGAAAAGAATGAAGGA+AGG | - | chr1_1:14638329-14638348 | None:intergenic | 25.0% |
| !! | TCTTTTGTAAATAACAAGGA+AGG | - | chr1_1:14638369-14638388 | None:intergenic | 25.0% |
| !!! | TTCCTTGTTATTTACAAAAG+AGG | + | chr1_1:14638368-14638387 | Msa0009790:intron | 25.0% |
| ! | AGGCGTCATAAAAAATAATT+TGG | + | chr1_1:14638516-14638535 | Msa0009790:intron | 25.0% |
| ! | TTCGCACTTAAAAGTTTATA+AGG | + | chr1_1:14638835-14638854 | Msa0009790:intron | 25.0% |
| ! | TTTACGTGTTGCAATATATT+TGG | + | chr1_1:14639222-14639241 | Msa0009790:intron | 25.0% |
| ! | AATATATTTGGTATCTGGTT+TGG | + | chr1_1:14639234-14639253 | Msa0009790:intron | 25.0% |
| ! | AAAAGAAAACATCCAAAATC+AGG | - | chr1_1:14639310-14639329 | None:intergenic | 25.0% |
| ! | AATTGTACAACATGAAACAT+GGG | - | chr1_1:14639414-14639433 | None:intergenic | 25.0% |
| ! | TAATTGTACAACATGAAACA+TGG | - | chr1_1:14639415-14639434 | None:intergenic | 25.0% |
| ! | TATCAAATATTGTCATGCTT+AGG | - | chr1_1:14639486-14639505 | None:intergenic | 25.0% |
| ! | TATTTGATAGATGTTACCAT+TGG | + | chr1_1:14639497-14639516 | Msa0009790:intron | 25.0% |
| ! | TAGGATTTATCTTCGATATA+AGG | - | chr1_1:14639702-14639721 | None:intergenic | 25.0% |
| ! | ATAAATCCTATCTATGTACA+TGG | + | chr1_1:14639712-14639731 | Msa0009790:CDS | 25.0% |
| ! | TTATTTATCATTGCTTCAAG+TGG | + | chr1_1:14640000-14640019 | Msa0009790:intron | 25.0% |
| !!! | GAAGGTTTTAAATAATAGTC+AGG | - | chr1_1:14640104-14640123 | None:intergenic | 25.0% |
| ! | TTAATGTTCATTCTTCTTCA+AGG | + | chr1_1:14640289-14640308 | Msa0009790:CDS | 25.0% |
| !!! | CCTTTTTTTTTAGGCAGAAT+GGG | - | chr1_1:14637982-14638001 | None:intergenic | 30.0% |
| !!! | TCCTTTTTTTTTAGGCAGAA+TGG | - | chr1_1:14637983-14638002 | None:intergenic | 30.0% |
| TCTAGTACGTGACAAAAAAT+GGG | - | chr1_1:14638022-14638041 | None:intergenic | 30.0% | |
| TTCTAGTACGTGACAAAAAA+TGG | - | chr1_1:14638023-14638042 | None:intergenic | 30.0% | |
| ATCAACTGAGTTATGATTCT+CGG | + | chr1_1:14638082-14638101 | Msa0009790:intron | 30.0% | |
| AACATTACGTTATGATCCAT+GGG | + | chr1_1:14638105-14638124 | Msa0009790:intron | 30.0% | |
| GAAAATGATATGTTATCCCA+TGG | - | chr1_1:14638124-14638143 | None:intergenic | 30.0% | |
| !! | ATTTGCTTTATTAGCTTGCT+TGG | + | chr1_1:14638458-14638477 | Msa0009790:intron | 30.0% |
| !!! | TTGATCATAAGTTTTGAAGC+TGG | + | chr1_1:14638765-14638784 | Msa0009790:intron | 30.0% |
| !!! | TGTATTGTGGTGTTTTTTGT+GGG | - | chr1_1:14638943-14638962 | None:intergenic | 30.0% |
| !! | TTTGATGTTGATTTCAACCA+TGG | + | chr1_1:14638980-14638999 | Msa0009790:intron | 30.0% |
| GATCAATGTTATTCAGTATC+TGG | + | chr1_1:14639191-14639210 | Msa0009790:intron | 30.0% | |
| GTTGCAATATATTTGGTATC+TGG | + | chr1_1:14639229-14639248 | Msa0009790:intron | 30.0% | |
| TCACAACAAACAATAGGATT+TGG | - | chr1_1:14639279-14639298 | None:intergenic | 30.0% | |
| ACAGATAAGTAGTAATGCAA+GGG | - | chr1_1:14639346-14639365 | None:intergenic | 30.0% | |
| TGTCAGATGTAAAACCATTT+AGG | + | chr1_1:14639363-14639382 | Msa0009790:intron | 30.0% | |
| GTCAGATGTAAAACCATTTA+GGG | + | chr1_1:14639364-14639383 | Msa0009790:intron | 30.0% | |
| TCAGATGTAAAACCATTTAG+GGG | + | chr1_1:14639365-14639384 | Msa0009790:intron | 30.0% | |
| ATATTGTTAAGACCCCTAAA+TGG | - | chr1_1:14639380-14639399 | None:intergenic | 30.0% | |
| ATTGTACAACATGAAACATG+GGG | - | chr1_1:14639413-14639432 | None:intergenic | 30.0% | |
| ATAGTAAAGAAAACCAATCC+TGG | - | chr1_1:14639612-14639631 | None:intergenic | 30.0% | |
| ! | TGGTTTTCTTTACTATTCGA+TGG | + | chr1_1:14639616-14639635 | Msa0009790:CDS | 30.0% |
| ! | TTTTCTTTACTATTCGATGG+TGG | + | chr1_1:14639619-14639638 | Msa0009790:CDS | 30.0% |
| GATCTCTTAAAAACCGTTAT+CGG | - | chr1_1:14639808-14639827 | None:intergenic | 30.0% | |
| TAGACCAATAGAGTTTCAAA+AGG | + | chr1_1:14639893-14639912 | Msa0009790:intron | 30.0% | |
| CTTGATATTGTAGAGAAAAG+CGG | - | chr1_1:14639960-14639979 | None:intergenic | 30.0% | |
| ! | GCTTTTCTCTACAATATCAA+GGG | + | chr1_1:14639959-14639978 | Msa0009790:intron | 30.0% |
| TACAAAAACAGTTTGAAGGA+AGG | - | chr1_1:14640122-14640141 | None:intergenic | 30.0% | |
| ACTGTACAAAAACAGTTTGA+AGG | - | chr1_1:14640126-14640145 | None:intergenic | 30.0% | |
| GAAGAATGAACATTAACAAG+CGG | - | chr1_1:14640285-14640304 | None:intergenic | 30.0% | |
| TCTTCTTCAAGGAATGTTTA+CGG | + | chr1_1:14640300-14640319 | Msa0009790:CDS | 30.0% | |
| GAAAACCACAGACAATTTAT+AGG | - | chr1_1:14640362-14640381 | None:intergenic | 30.0% | |
| ACCATGTACTACCTTTATTG+TGG | - | chr1_1:14637882-14637901 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTAGGCAGAATGGG+AGG | - | chr1_1:14637979-14637998 | None:intergenic | 35.0% |
| CCCATTCTGCCTAAAAAAAA+AGG | + | chr1_1:14637979-14637998 | Msa0009790:intron | 35.0% | |
| GAACATTACGTTATGATCCA+TGG | + | chr1_1:14638104-14638123 | Msa0009790:intron | 35.0% | |
| ! | GGCCTCTTTTGTAAATAACA+AGG | - | chr1_1:14638373-14638392 | None:intergenic | 35.0% |
| ! | ACAAAAGAGGCCATTCTTTT+AGG | + | chr1_1:14638381-14638400 | Msa0009790:intron | 35.0% |
| ! | CAAAAGAGGCCATTCTTTTA+GGG | + | chr1_1:14638382-14638401 | Msa0009790:intron | 35.0% |
| TCAAATATCAAGCACAATGC+AGG | + | chr1_1:14638496-14638515 | Msa0009790:intron | 35.0% | |
| GTTACACATAAACACACAGA+AGG | - | chr1_1:14638862-14638881 | None:intergenic | 35.0% | |
| !!! | GTATTGTGGTGTTTTTTGTG+GGG | - | chr1_1:14638942-14638961 | None:intergenic | 35.0% |
| !!! | GTGTATTGTGGTGTTTTTTG+TGG | - | chr1_1:14638944-14638963 | None:intergenic | 35.0% |
| CAAAAAACACCACAATACAC+TGG | + | chr1_1:14638944-14638963 | Msa0009790:intron | 35.0% | |
| TGAAAACTACCAGTGTATTG+TGG | - | chr1_1:14638956-14638975 | None:intergenic | 35.0% | |
| TTGTCAAACTCTTGAGTTTG+CGG | + | chr1_1:14639021-14639040 | Msa0009790:intron | 35.0% | |
| TCGAGTAAACTCTGATAACA+TGG | + | chr1_1:14639103-14639122 | Msa0009790:intron | 35.0% | |
| !! | ACATTGGTTTGGCCTTAAAA+TGG | + | chr1_1:14639160-14639179 | Msa0009790:intron | 35.0% |
| TTGGTTCAACAACTAGTAGT+AGG | - | chr1_1:14639260-14639279 | None:intergenic | 35.0% | |
| GACAGATAAGTAGTAATGCA+AGG | - | chr1_1:14639347-14639366 | None:intergenic | 35.0% | |
| GATAGATGTTACCATTGGAA+TGG | + | chr1_1:14639502-14639521 | Msa0009790:intron | 35.0% | |
| CTATCACAAATCCATTCCAA+TGG | - | chr1_1:14639516-14639535 | None:intergenic | 35.0% | |
| TGGATGCATAAAGTAACGTA+AGG | - | chr1_1:14639553-14639572 | None:intergenic | 35.0% | |
| CCTGGAGAAAAAATCCATTA+AGG | - | chr1_1:14639594-14639613 | None:intergenic | 35.0% | |
| !!! | CCTTAATGGATTTTTTCTCC+AGG | + | chr1_1:14639591-14639610 | Msa0009790:intron | 35.0% |
| !!! | ATGGATTTTTTCTCCAGGAT+TGG | + | chr1_1:14639596-14639615 | Msa0009790:intron | 35.0% |
| CACAAGGTGTAAACTACTAA+GGG | - | chr1_1:14639749-14639768 | None:intergenic | 35.0% | |
| GAGAAGAGATGATTACCTAT+AGG | - | chr1_1:14639846-14639865 | None:intergenic | 35.0% | |
| GGTAATCATCTCTTCTCATT+CGG | + | chr1_1:14639849-14639868 | Msa0009790:intron | 35.0% | |
| ! | TGGTCTAAAGCAAACATAAC+TGG | - | chr1_1:14639880-14639899 | None:intergenic | 35.0% |
| ACCAATAGAGTTTCAAAAGG+TGG | + | chr1_1:14639896-14639915 | Msa0009790:intron | 35.0% | |
| !!! | ACCACCTTTTGAAACTCTAT+TGG | - | chr1_1:14639900-14639919 | None:intergenic | 35.0% |
| ! | CGCTTTTCTCTACAATATCA+AGG | + | chr1_1:14639958-14639977 | Msa0009790:intron | 35.0% |
| GCTTGATCTTATAACCTCAA+GGG | - | chr1_1:14640053-14640072 | None:intergenic | 35.0% | |
| AGCTTGATCTTATAACCTCA+AGG | - | chr1_1:14640054-14640073 | None:intergenic | 35.0% | |
| !!! | GTACAGTATGTGTTTTAGAG+TGG | + | chr1_1:14640139-14640158 | Msa0009790:intron | 35.0% |
| CTCAGAAAGCAAATAACATG+TGG | + | chr1_1:14640227-14640246 | Msa0009790:CDS | 35.0% | |
| AGAAAGCAAATAACATGTGG+TGG | + | chr1_1:14640230-14640249 | Msa0009790:CDS | 35.0% | |
| CTTGTCCTATAAATTGTCTG+TGG | + | chr1_1:14640354-14640373 | Msa0009790:CDS | 35.0% | |
| ! | TGTGGTTTTCCAAATACTGA+AGG | + | chr1_1:14640372-14640391 | Msa0009790:CDS | 35.0% |
| ATGCAGAAACCTTCAGTATT+TGG | - | chr1_1:14640384-14640403 | None:intergenic | 35.0% | |
| ! | TTTTGTTAGAGGTTATGCCT+AGG | + | chr1_1:14640425-14640444 | Msa0009790:CDS | 35.0% |
| CCTTTATTGTGGCACGATTT+AGG | - | chr1_1:14637871-14637890 | None:intergenic | 40.0% | |
| CCTAAATCGTGCCACAATAA+AGG | + | chr1_1:14637868-14637887 | Msa0009790:CDS | 40.0% | |
| GCCACAATAAAGGTAGTACA+TGG | + | chr1_1:14637878-14637897 | Msa0009790:intron | 40.0% | |
| AAATGATATGGCCCCTTGTA+GGG | - | chr1_1:14638411-14638430 | None:intergenic | 40.0% | |
| !! | GCTTTATTAGCTTGCTTGGT+CGG | + | chr1_1:14638462-14638481 | Msa0009790:intron | 40.0% |
| !! | CTTTATTAGCTTGCTTGGTC+GGG | + | chr1_1:14638463-14638482 | Msa0009790:intron | 40.0% |
| TTCAACCATGGTAGTAGTCA+TGG | + | chr1_1:14638992-14639011 | Msa0009790:intron | 40.0% | |
| GAAAACATCCAAAATCAGGC+AGG | - | chr1_1:14639306-14639325 | None:intergenic | 40.0% | |
| ATAAGGCCATGTAACTCTTG+CGG | - | chr1_1:14639685-14639704 | None:intergenic | 40.0% | |
| GAACAGCCATGTACATAGAT+AGG | - | chr1_1:14639721-14639740 | None:intergenic | 40.0% | |
| ATCTATGTACATGGCTGTTC+TGG | + | chr1_1:14639721-14639740 | Msa0009790:CDS | 40.0% | |
| CCACAAGGTGTAAACTACTA+AGG | - | chr1_1:14639750-14639769 | None:intergenic | 40.0% | |
| CCTTAGTAGTTTACACCTTG+TGG | + | chr1_1:14639747-14639766 | Msa0009790:intron | 40.0% | |
| GTAGTATAGAACTTGCCACA+AGG | - | chr1_1:14639765-14639784 | None:intergenic | 40.0% | |
| TCAATGTCTTACGCCGATAA+CGG | + | chr1_1:14639792-14639811 | Msa0009790:intron | 40.0% | |
| CTATAGGAAGTCATGACTTC+AGG | - | chr1_1:14639830-14639849 | None:intergenic | 40.0% | |
| CTGAAGTCATGACTTCCTAT+AGG | + | chr1_1:14639828-14639847 | Msa0009790:intron | 40.0% | |
| TTACAACTGAGCTGAACTCA+TGG | + | chr1_1:14640075-14640094 | Msa0009790:intron | 40.0% | |
| TCTTCAAGGAATGTTTACGG+TGG | + | chr1_1:14640303-14640322 | Msa0009790:CDS | 40.0% | |
| ! | TGGAGCAAGCTTTTTGTTAG+AGG | + | chr1_1:14640414-14640433 | Msa0009790:CDS | 40.0% |
| AGCTACTGGAAGCAAAATCG+TGG | - | chr1_1:14637955-14637974 | None:intergenic | 45.0% | |
| GTAGGGGATCCCTAAAAGAA+TGG | - | chr1_1:14638394-14638413 | None:intergenic | 45.0% | |
| !! | TCTTTTAGGGATCCCCTACA+AGG | + | chr1_1:14638395-14638414 | Msa0009790:intron | 45.0% |
| !! | CTTTTAGGGATCCCCTACAA+GGG | + | chr1_1:14638396-14638415 | Msa0009790:intron | 45.0% |
| !! | TTTTAGGGATCCCCTACAAG+GGG | + | chr1_1:14638397-14638416 | Msa0009790:intron | 45.0% |
| AATGATATGGCCCCTTGTAG+GGG | - | chr1_1:14638410-14638429 | None:intergenic | 45.0% | |
| CAAATGATATGGCCCCTTGT+AGG | - | chr1_1:14638412-14638431 | None:intergenic | 45.0% | |
| GACAACCATGACTACTACCA+TGG | - | chr1_1:14639000-14639019 | None:intergenic | 45.0% | |
| TCAAACTCTTGAGTTTGCGG+TGG | + | chr1_1:14639024-14639043 | Msa0009790:intron | 45.0% | |
| GGCGTGTCACAACAAACAAT+AGG | - | chr1_1:14639285-14639304 | None:intergenic | 45.0% | |
| TTAGAAGCTATGCGACCAGA+GGG | + | chr1_1:14639654-14639673 | Msa0009790:CDS | 45.0% | |
| GGCGTAAGACATTGACAACA+AGG | - | chr1_1:14639787-14639806 | None:intergenic | 45.0% | |
| TGTGGTTCCAATCACGATTG+TGG | - | chr1_1:14639923-14639942 | None:intergenic | 45.0% | |
| AATGTTTACGGTGGCAACGA+TGG | + | chr1_1:14640312-14640331 | Msa0009790:CDS | 45.0% | |
| TGAAGGTTTCTGCATCAGTG+TGG | + | chr1_1:14640389-14640408 | Msa0009790:CDS | 45.0% | |
| GTTTCTGCATCAGTGTGGAA+TGG | + | chr1_1:14640394-14640413 | Msa0009790:CDS | 45.0% | |
| TCCTTGAGAATAACCTGCCT+AGG | - | chr1_1:14640445-14640464 | None:intergenic | 45.0% | |
| !! | CGCATAGCTTCTAAGGTCTC+AGG | - | chr1_1:14639648-14639667 | None:intergenic | 50.0% |
| CTCTGGTCGCATAGCTTCTA+AGG | - | chr1_1:14639655-14639674 | None:intergenic | 50.0% | |
| CTTAGAAGCTATGCGACCAG+AGG | + | chr1_1:14639653-14639672 | Msa0009790:CDS | 50.0% | |
| AGGTGGTCCACAATCGTGAT+TGG | + | chr1_1:14639913-14639932 | Msa0009790:intron | 50.0% | |
| GGAACCACACTAGCTGTAGT+TGG | + | chr1_1:14639934-14639953 | Msa0009790:intron | 50.0% | |
| TTTGCAACTGTCGTCCCTTG+AGG | + | chr1_1:14640036-14640055 | Msa0009790:intron | 50.0% | |
| ! | AACATGTGGTGGCGCTTAAG+TGG | + | chr1_1:14640241-14640260 | Msa0009790:CDS | 50.0% |
| GTTAGAGGTTATGCCTAGGC+AGG | + | chr1_1:14640429-14640448 | Msa0009790:CDS | 50.0% | |
| GCCTAGGCAGGTTATTCTCA+AGG | + | chr1_1:14640441-14640460 | Msa0009790:CDS | 50.0% | |
| GAAGCAAAATCGTGGCGCGA+TGG | - | chr1_1:14637947-14637966 | None:intergenic | 55.0% | |
| GCAGAATGGGAGGAAGCTAC+TGG | - | chr1_1:14637969-14637988 | None:intergenic | 55.0% | |
| ! | GTGACACGCCTGCCTGATTT+TGG | + | chr1_1:14639295-14639314 | Msa0009790:intron | 55.0% |
| GAGCTGCCGCAAGAGTTACA+TGG | + | chr1_1:14639676-14639695 | Msa0009790:CDS | 55.0% | |
| !! | TGGCGCTTAAGTGGCTTGCT+CGG | + | chr1_1:14640250-14640269 | Msa0009790:CDS | 55.0% |
| GCGGCCAACTACAGCTAGTG+TGG | - | chr1_1:14639941-14639960 | None:intergenic | 60.0% | |
| !! | GGCGCTTAAGTGGCTTGCTC+GGG | + | chr1_1:14640251-14640270 | Msa0009790:CDS | 60.0% |
| !! | GCGCTTAAGTGGCTTGCTCG+GGG | + | chr1_1:14640252-14640271 | Msa0009790:CDS | 60.0% |
| ACTCTTGCGGCAGCTCCCTC+TGG | - | chr1_1:14639672-14639691 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 14637811 | 14640516 | 14637811 | ID=Msa0009790;Name=Msa0009790 |
| chr1_1 | mRNA | 14637811 | 14640516 | 14637811 | ID=Msa0009790-mRNA-1;Parent=Msa0009790;Name=Msa0009790-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|0.66|1|1|3|0|171 |
| chr1_1 | exon | 14637811 | 14637889 | 14637811 | ID=Msa0009790-mRNA-1:exon:5404;Parent=Msa0009790-mRNA-1 |
| chr1_1 | exon | 14639613 | 14639742 | 14639613 | ID=Msa0009790-mRNA-1:exon:5405;Parent=Msa0009790-mRNA-1 |
| chr1_1 | exon | 14640210 | 14640516 | 14640210 | ID=Msa0009790-mRNA-1:exon:5406;Parent=Msa0009790-mRNA-1 |
| chr1_1 | CDS | 14637811 | 14637889 | 14637811 | ID=Msa0009790-mRNA-1:cds;Parent=Msa0009790-mRNA-1 |
| chr1_1 | CDS | 14639613 | 14639742 | 14639613 | ID=Msa0009790-mRNA-1:cds;Parent=Msa0009790-mRNA-1 |
| chr1_1 | CDS | 14640210 | 14640516 | 14640210 | ID=Msa0009790-mRNA-1:cds;Parent=Msa0009790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
