Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150660 | KEH37506.1 | 81.176 | 255 | 19 | 3 | 8 | 244 | 105 | 348 | 1.34e-136 | 398 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150660 | sp|B9RK42|GPC1_RICCO | 67.442 | 258 | 49 | 3 | 8 | 244 | 124 | 367 | 1.70e-114 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150660 | A0A072V798 | 81.176 | 255 | 19 | 3 | 8 | 244 | 105 | 348 | 6.42e-137 | 398 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009790 | Msa0150660 | 0.861998 | 6.914074e-64 | -8.615850e-47 |
| Msa0009900 | Msa0150660 | 0.960996 | 3.415472e-119 | -8.615850e-47 |
| Msa0150660 | Msa0178510 | 0.805912 | 1.061545e-49 | -8.615850e-47 |
| Msa0150660 | Msa0274030 | 0.957225 | 4.530301e-115 | -8.615850e-47 |
| Msa0150660 | Msa1076870 | 0.883229 | 5.353993e-71 | -8.615850e-47 |
| Msa0150660 | Msa1082500 | 0.800854 | 1.185185e-48 | -8.615850e-47 |
| Msa0150660 | Msa1372150 | 0.803184 | 3.934834e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150660 | MtrunA17_Chr2g0300041 | 81.176 | 255 | 19 | 3 | 8 | 244 | 107 | 350 | 1.27e-140 | 398 |
| Msa0150660 | MtrunA17_Chr4g0070761 | 67.249 | 229 | 46 | 3 | 8 | 218 | 108 | 325 | 6.53e-104 | 304 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150660 | AT5G35460.1 | 66.400 | 250 | 48 | 4 | 8 | 235 | 121 | 356 | 1.23e-107 | 316 |
| Msa0150660 | AT5G35460.2 | 66.400 | 250 | 48 | 4 | 8 | 235 | 121 | 356 | 1.23e-107 | 316 |
Find 38 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATGTACATGGCTGTTTC+TGG | 0.136807 | 1_4:-12252053 | Msa0150660:intron |
| ATGCAGAAACCTTCAGTATT+TGG | 0.172838 | 1_4:+12251393 | None:intergenic |
| GAAAACCACAGACAATTTAT+AGG | 0.268132 | 1_4:+12251415 | None:intergenic |
| TAGGATTTATCTTCGATATA+AGG | 0.285131 | 1_4:+12252076 | None:intergenic |
| ATATGCATTTGATTCAATAT+TGG | 0.292604 | 1_4:-12253426 | Msa0150660:CDS |
| TAGCATGGGCATTGATTGTT+TGG | 0.342012 | 1_4:-12253604 | Msa0150660:CDS |
| CTCTGGTCGCATAGCTTCTA+AGG | 0.350803 | 1_4:+12252123 | None:intergenic |
| GGCGCTTAAGTGGCTTGCTC+GGG | 0.354857 | 1_4:-12251523 | Msa0150660:CDS |
| TTAATGTTCATTCTTCTTCA+AGG | 0.358672 | 1_4:-12251485 | Msa0150660:CDS |
| TCTTCTTCAAGGAATGTTTA+CGG | 0.360145 | 1_4:-12251474 | Msa0150660:CDS |
| TGGCGCTTAAGTGGCTTGCT+CGG | 0.392782 | 1_4:-12251524 | Msa0150660:CDS |
| TATGATTGATCATTTAGTAT+TGG | 0.423860 | 1_4:+12251281 | None:intergenic |
| AAACAGCCATGTACATAGAT+AGG | 0.426768 | 1_4:+12252057 | None:intergenic |
| ACTCTTGCGGCAGCTCCCTC+TGG | 0.428537 | 1_4:+12252106 | None:intergenic |
| GATTGTTTGGCGTTGCAGTT+TGG | 0.439343 | 1_4:-12253591 | Msa0150660:CDS |
| CGCATAGCTTCTAAGGTCTC+AGG | 0.442564 | 1_4:+12252130 | None:intergenic |
| GTTAGAGGTTATGCCTAGGC+AGG | 0.483117 | 1_4:-12251345 | Msa0150660:CDS |
| AATTTATAGGACAAGAATAT+CGG | 0.491436 | 1_4:+12251428 | None:intergenic |
| AACATGTGGTGGCGCTTAAG+TGG | 0.500643 | 1_4:-12251533 | Msa0150660:CDS |
| AGAACATACCTGGTAAAAGA+TGG | 0.526879 | 1_4:+12253531 | None:intergenic |
| CTTGTCCTATAAATTGTCTG+TGG | 0.529231 | 1_4:-12251420 | Msa0150660:CDS |
| GCCTAGGCAGGTTATTCTCA+AGG | 0.551205 | 1_4:-12251333 | Msa0150660:CDS |
| TCCTTGAGAATAACCTGCCT+AGG | 0.556675 | 1_4:+12251332 | None:intergenic |
| ACAATCAATGCCCATGCTAA+CGG | 0.568226 | 1_4:+12253608 | None:intergenic |
| ATAAATCCTATCTATGTACA+TGG | 0.579385 | 1_4:-12252063 | Msa0150660:CDS |
| GTTTCTGCATCAGTGTGGAA+TGG | 0.583826 | 1_4:-12251380 | Msa0150660:CDS |
| GAAGAATGAACATTAACAAG+CGG | 0.588184 | 1_4:+12251492 | None:intergenic |
| GAGCTGCCGCAAGAGTTACA+TGG | 0.601793 | 1_4:-12252099 | Msa0150660:CDS |
| AATGTTTACGGTGGCAACGA+TGG | 0.607699 | 1_4:-12251462 | Msa0150660:CDS |
| GCGCTTAAGTGGCTTGCTCG+GGG | 0.610530 | 1_4:-12251522 | Msa0150660:CDS |
| AGAAAGCAAATAACATGTGG+TGG | 0.624496 | 1_4:-12251544 | Msa0150660:CDS |
| ATAAGGCCATGTAACTCTTG+CGG | 0.630543 | 1_4:+12252093 | None:intergenic |
| TTAGAAGCTATGCGACCAGA+GGG | 0.634042 | 1_4:-12252121 | Msa0150660:CDS |
| CTTAGAAGCTATGCGACCAG+AGG | 0.642060 | 1_4:-12252122 | Msa0150660:CDS |
| CTCAGAAAGCAAATAACATG+TGG | 0.642551 | 1_4:-12251547 | Msa0150660:CDS |
| TGAAGGTTTCTGCATCAGTG+TGG | 0.682254 | 1_4:-12251385 | Msa0150660:CDS |
| TCTTCAAGGAATGTTTACGG+TGG | 0.685251 | 1_4:-12251471 | Msa0150660:CDS |
| TTATGATGATGACAGCGATG+AGG | 0.704276 | 1_4:+12253904 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAATATTAAAAATTGT+AGG | + | chr1_4:12251691-12251710 | None:intergenic | 10.0% |
| !!! | TTATTAATCTTACATTTTTT+AGG | - | chr1_4:12253609-12253628 | Msa0150660:CDS | 10.0% |
| !!! | TATTAATCTTACATTTTTTA+GGG | - | chr1_4:12253610-12253629 | Msa0150660:CDS | 10.0% |
| !! | ATATGCATTTGATTCAATAT+TGG | - | chr1_4:12251769-12251788 | Msa0150660:intron | 20.0% |
| !! | TCTATGTGAACAAAAATTAA+TGG | + | chr1_4:12251908-12251927 | None:intergenic | 20.0% |
| !!! | ACACCAAATAATTTTTAAGA+AGG | - | chr1_4:12251977-12251996 | Msa0150660:intron | 20.0% |
| !!! | GATTTATATATTAGTTTCCA+GGG | + | chr1_4:12252019-12252038 | None:intergenic | 20.0% |
| !!! | AGATTTATATATTAGTTTCC+AGG | + | chr1_4:12252020-12252039 | None:intergenic | 20.0% |
| !!! | TTATTTTCTTCTATTTATGC+TGG | - | chr1_4:12252310-12252329 | Msa0150660:intron | 20.0% |
| !!! | GCAAATTTACAATTTTACAT+TGG | - | chr1_4:12252563-12252582 | Msa0150660:intron | 20.0% |
| !!! | TTTACAATTTTACATTGGTT+TGG | - | chr1_4:12252568-12252587 | Msa0150660:intron | 20.0% |
| !!! | GATCAAAATTTTCCATTTTA+AGG | + | chr1_4:12252594-12252613 | None:intergenic | 20.0% |
| !! | GGTATGATGAATATTATAAA+TGG | + | chr1_4:12252992-12253011 | None:intergenic | 20.0% |
| !! | TAATATTCATCATACCTTAA+TGG | - | chr1_4:12252996-12253015 | Msa0150660:intron | 20.0% |
| !! | AATTTATAGGACAAGAATAT+CGG | + | chr1_4:12253770-12253789 | None:intergenic | 20.0% |
| !! | TATGATTGATCATTTAGTAT+TGG | + | chr1_4:12253917-12253936 | None:intergenic | 20.0% |
| ! | GTAAACCAAAAAGATTGTAT+TGG | + | chr1_4:12251420-12251439 | None:intergenic | 25.0% |
| ! | CATTCTTTGGATAAAAAAGA+AGG | + | chr1_4:12251442-12251461 | None:intergenic | 25.0% |
| ! | AGAAAAAACTTCTCATTCTT+TGG | + | chr1_4:12251455-12251474 | None:intergenic | 25.0% |
| !!! | AAAGAATGAGAAGTTTTTTC+TGG | - | chr1_4:12251454-12251473 | Msa0150660:CDS | 25.0% |
| ! | ATGTGTGATTTATTTAAGTG+CGG | - | chr1_4:12251555-12251574 | Msa0150660:CDS | 25.0% |
| !! | ATTTATTTAAGTGCGGTTTT+AGG | - | chr1_4:12251562-12251581 | Msa0150660:CDS | 25.0% |
| !! | TTTATTTAAGTGCGGTTTTA+GGG | - | chr1_4:12251563-12251582 | Msa0150660:CDS | 25.0% |
| !! | ATAACCTTTTGCAAAATCAT+TGG | - | chr1_4:12251724-12251743 | Msa0150660:intron | 25.0% |
| ! | AAAGCATATAATATCTCTGA+TGG | - | chr1_4:12251808-12251827 | Msa0150660:intron | 25.0% |
| !! | TTCTACTATCATGATTTTTG+TGG | - | chr1_4:12251857-12251876 | Msa0150660:intron | 25.0% |
| !!! | AAAATTAATGGACTAAGCTA+AGG | + | chr1_4:12251896-12251915 | None:intergenic | 25.0% |
| ! | CCTCCTTCTTAAAAATTATT+TGG | + | chr1_4:12251983-12252002 | None:intergenic | 25.0% |
| !!! | CCAAATAATTTTTAAGAAGG+AGG | - | chr1_4:12251980-12251999 | Msa0150660:intron | 25.0% |
| !! | GACTTTTACTACTAAACTTA+AGG | + | chr1_4:12252109-12252128 | None:intergenic | 25.0% |
| ! | TTCGCACTTAAAAGTTTATA+AGG | - | chr1_4:12252252-12252271 | Msa0150660:intron | 25.0% |
| ! | TTTACGTGTTGCAATATATT+TGG | - | chr1_4:12252641-12252660 | Msa0150660:intron | 25.0% |
| ! | AATATATTTGGTATCTGGTT+TGG | - | chr1_4:12252653-12252672 | Msa0150660:intron | 25.0% |
| ! | AAAAGAAAACATCCAAAATC+AGG | + | chr1_4:12252727-12252746 | None:intergenic | 25.0% |
| ! | AATTGTACAACATGAAACAT+GGG | + | chr1_4:12252831-12252850 | None:intergenic | 25.0% |
| ! | TAATTGTACAACATGAAACA+TGG | + | chr1_4:12252832-12252851 | None:intergenic | 25.0% |
| ! | TATCAAATATTGTCATGCTT+AGG | + | chr1_4:12252904-12252923 | None:intergenic | 25.0% |
| ! | TATTTGATAGATGTTACCAT+TGG | - | chr1_4:12252915-12252934 | Msa0150660:intron | 25.0% |
| ! | TAGGATTTATCTTCGATATA+AGG | + | chr1_4:12253122-12253141 | None:intergenic | 25.0% |
| ! | ATAAATCCTATCTATGTACA+TGG | - | chr1_4:12253132-12253151 | Msa0150660:intron | 25.0% |
| ! | TTATTTATCATTGCTTCAAG+TGG | - | chr1_4:12253421-12253440 | Msa0150660:CDS | 25.0% |
| !!! | GAAGGTTTTAAATAATAGTC+AGG | + | chr1_4:12253525-12253544 | None:intergenic | 25.0% |
| ! | TTAATGTTCATTCTTCTTCA+AGG | - | chr1_4:12253710-12253729 | Msa0150660:intron | 25.0% |
| AACTATTGTTCATGTGTTTC+AGG | - | chr1_4:12251379-12251398 | Msa0150660:CDS | 30.0% | |
| ! | CTATGCCAATACAATCTTTT+TGG | - | chr1_4:12251412-12251431 | Msa0150660:CDS | 30.0% |
| !! | AAAATCATTGGCTTCTACTA+TGG | - | chr1_4:12251736-12251755 | Msa0150660:intron | 30.0% |
| ! | ATTTTTGTGGTATCTAGCAT+TGG | - | chr1_4:12251870-12251889 | Msa0150660:intron | 30.0% |
| ! | ATATATTAGTTTCCAGGGTT+TGG | + | chr1_4:12252014-12252033 | None:intergenic | 30.0% |
| ! | TTCAAAGTTGATCACGTATA+CGG | + | chr1_4:12252131-12252150 | None:intergenic | 30.0% |
| !!! | TTGATCATAAGTTTTGAAGC+TGG | - | chr1_4:12252182-12252201 | Msa0150660:intron | 30.0% |
| AATGAAAACTACCAGTGTAT+TGG | + | chr1_4:12252376-12252395 | None:intergenic | 30.0% | |
| !! | TTTGATGTTGATTTCAACCA+TGG | - | chr1_4:12252398-12252417 | Msa0150660:intron | 30.0% |
| GATCAATGTTATTCAGTATC+TGG | - | chr1_4:12252610-12252629 | Msa0150660:intron | 30.0% | |
| GTTGCAATATATTTGGTATC+TGG | - | chr1_4:12252648-12252667 | Msa0150660:intron | 30.0% | |
| TGTCAACAAACAATAGGATT+TGG | + | chr1_4:12252698-12252717 | None:intergenic | 30.0% | |
| ACAGATAAGTAGTAATGCAA+GGG | + | chr1_4:12252763-12252782 | None:intergenic | 30.0% | |
| TGTCAGATGTAAAACCATTT+AGG | - | chr1_4:12252780-12252799 | Msa0150660:intron | 30.0% | |
| GTCAGATGTAAAACCATTTA+GGG | - | chr1_4:12252781-12252800 | Msa0150660:intron | 30.0% | |
| TCAGATGTAAAACCATTTAG+GGG | - | chr1_4:12252782-12252801 | Msa0150660:intron | 30.0% | |
| ATATTGTTAAGACCCCTAAA+TGG | + | chr1_4:12252797-12252816 | None:intergenic | 30.0% | |
| ATTGTACAACATGAAACATG+GGG | + | chr1_4:12252830-12252849 | None:intergenic | 30.0% | |
| TAGTAAAGAAAACCAAATCC+TGG | + | chr1_4:12253031-12253050 | None:intergenic | 30.0% | |
| ! | TGGTTTTCTTTACTATTCGA+TGG | - | chr1_4:12253036-12253055 | Msa0150660:intron | 30.0% |
| ! | TTTTCTTTACTATTCGATGG+TGG | - | chr1_4:12253039-12253058 | Msa0150660:intron | 30.0% |
| GATCTCTTAAAAACCGTTAT+CGG | + | chr1_4:12253229-12253248 | None:intergenic | 30.0% | |
| TAGACCAATAGAGTTTCAAA+AGG | - | chr1_4:12253314-12253333 | Msa0150660:intron | 30.0% | |
| CTTGATATTGTAGAGAAAAG+CGG | + | chr1_4:12253381-12253400 | None:intergenic | 30.0% | |
| ! | GCTTTTCTCTACAATATCAA+GGG | - | chr1_4:12253380-12253399 | Msa0150660:intron | 30.0% |
| TACAAAAACAGTTTGAAGGA+AGG | + | chr1_4:12253543-12253562 | None:intergenic | 30.0% | |
| ACTGTACAAAAACAGTTTGA+AGG | + | chr1_4:12253547-12253566 | None:intergenic | 30.0% | |
| GAAGAATGAACATTAACAAG+CGG | + | chr1_4:12253706-12253725 | None:intergenic | 30.0% | |
| TCTTCTTCAAGGAATGTTTA+CGG | - | chr1_4:12253721-12253740 | Msa0150660:CDS | 30.0% | |
| GAAAACCACAGACAATTTAT+AGG | + | chr1_4:12253783-12253802 | None:intergenic | 30.0% | |
| GCTAGGATGTCAAATTACTA+AGG | + | chr1_4:12251513-12251532 | None:intergenic | 35.0% | |
| ! | GTTCTTATCCATCTTTTACC+AGG | - | chr1_4:12251656-12251675 | Msa0150660:intron | 35.0% |
| AGAACATACCTGGTAAAAGA+TGG | + | chr1_4:12251667-12251686 | None:intergenic | 35.0% | |
| AATTGTAGGTAGAACATACC+TGG | + | chr1_4:12251677-12251696 | None:intergenic | 35.0% | |
| ! | GAAGCCAATGATTTTGCAAA+AGG | + | chr1_4:12251731-12251750 | None:intergenic | 35.0% |
| !! | AGATATTTGTTATCCCACGA+AGG | - | chr1_4:12251931-12251950 | Msa0150660:intron | 35.0% |
| !! | AATTTTTAAGAAGGAGGTCC+AGG | - | chr1_4:12251986-12252005 | Msa0150660:intron | 35.0% |
| !! | ATTTTTAAGAAGGAGGTCCA+GGG | - | chr1_4:12251987-12252006 | Msa0150660:intron | 35.0% |
| GTTACACATAAACACACAGA+AGG | + | chr1_4:12252279-12252298 | None:intergenic | 35.0% | |
| !!! | TATTGGTGGTGTTTTTTGTG+GGG | + | chr1_4:12252359-12252378 | None:intergenic | 35.0% |
| !!! | GTATTGGTGGTGTTTTTTGT+GGG | + | chr1_4:12252360-12252379 | None:intergenic | 35.0% |
| !!! | TGTATTGGTGGTGTTTTTTG+TGG | + | chr1_4:12252361-12252380 | None:intergenic | 35.0% |
| AAAAAACACCACCAATACAC+TGG | - | chr1_4:12252362-12252381 | Msa0150660:intron | 35.0% | |
| TTGTCAAACTCTTGAGTTTG+CGG | - | chr1_4:12252439-12252458 | Msa0150660:intron | 35.0% | |
| TCGAGTAAACTCTGATAACA+TGG | - | chr1_4:12252521-12252540 | Msa0150660:intron | 35.0% | |
| !! | ACATTGGTTTGGCCTTAAAA+TGG | - | chr1_4:12252579-12252598 | Msa0150660:intron | 35.0% |
| TTGGTTCAACAACTAGTAGT+AGG | + | chr1_4:12252679-12252698 | None:intergenic | 35.0% | |
| GACAGATAAGTAGTAATGCA+AGG | + | chr1_4:12252764-12252783 | None:intergenic | 35.0% | |
| GATAGATGTTACCATTGGAA+TGG | - | chr1_4:12252920-12252939 | Msa0150660:intron | 35.0% | |
| CTATCACAAATCCATTCCAA+TGG | + | chr1_4:12252934-12252953 | None:intergenic | 35.0% | |
| GGATGCATAAAGTAACGTAA+AGG | + | chr1_4:12252971-12252990 | None:intergenic | 35.0% | |
| CCTGGAGAAAAAATCCATTA+AGG | + | chr1_4:12253013-12253032 | None:intergenic | 35.0% | |
| !!! | CCTTAATGGATTTTTTCTCC+AGG | - | chr1_4:12253010-12253029 | Msa0150660:intron | 35.0% |
| !!! | TGGATTTTTTCTCCAGGATT+TGG | - | chr1_4:12253016-12253035 | Msa0150660:intron | 35.0% |
| AAACAGCCATGTACATAGAT+AGG | + | chr1_4:12253141-12253160 | None:intergenic | 35.0% | |
| CACAAGGTGTAAACTACTAA+GGG | + | chr1_4:12253170-12253189 | None:intergenic | 35.0% | |
| GAGAAGAGATGATTACCTAT+AGG | + | chr1_4:12253267-12253286 | None:intergenic | 35.0% | |
| GGTAATCATCTCTTCTCATT+CGG | - | chr1_4:12253270-12253289 | Msa0150660:intron | 35.0% | |
| ! | TGGTCTAAAGCAAACATAAC+TGG | + | chr1_4:12253301-12253320 | None:intergenic | 35.0% |
| ACCAATAGAGTTTCAAAAGG+TGG | - | chr1_4:12253317-12253336 | Msa0150660:intron | 35.0% | |
| !!! | ACCACCTTTTGAAACTCTAT+TGG | + | chr1_4:12253321-12253340 | None:intergenic | 35.0% |
| ! | CGCTTTTCTCTACAATATCA+AGG | - | chr1_4:12253379-12253398 | Msa0150660:intron | 35.0% |
| GCTTGATCTTATAACCTCAA+GGG | + | chr1_4:12253474-12253493 | None:intergenic | 35.0% | |
| AGCTTGATCTTATAACCTCA+AGG | + | chr1_4:12253475-12253494 | None:intergenic | 35.0% | |
| !!! | GTACAGTATGTGTTTTAGAG+TGG | - | chr1_4:12253560-12253579 | Msa0150660:CDS | 35.0% |
| CTCAGAAAGCAAATAACATG+TGG | - | chr1_4:12253648-12253667 | Msa0150660:intron | 35.0% | |
| AGAAAGCAAATAACATGTGG+TGG | - | chr1_4:12253651-12253670 | Msa0150660:intron | 35.0% | |
| CTTGTCCTATAAATTGTCTG+TGG | - | chr1_4:12253775-12253794 | Msa0150660:CDS | 35.0% | |
| ! | TGTGGTTTTCCAAATACTGA+AGG | - | chr1_4:12253793-12253812 | Msa0150660:CDS | 35.0% |
| ATGCAGAAACCTTCAGTATT+TGG | + | chr1_4:12253805-12253824 | None:intergenic | 35.0% | |
| ! | TTTTGTTAGAGGTTATGCCT+AGG | - | chr1_4:12253846-12253865 | Msa0150660:intron | 35.0% |
| ! | TTATGATGATGACAGCGATG+AGG | + | chr1_4:12251294-12251313 | None:intergenic | 40.0% |
| TCATCGCTGTCATCATCATA+AGG | - | chr1_4:12251293-12251312 | Msa0150660:CDS | 40.0% | |
| TTGACATCCTAGCACAAGAA+TGG | - | chr1_4:12251520-12251539 | Msa0150660:CDS | 40.0% | |
| CAATGAACCATTCTTGTGCT+AGG | + | chr1_4:12251530-12251549 | None:intergenic | 40.0% | |
| CTAGCACAAGAATGGTTCAT+TGG | - | chr1_4:12251528-12251547 | Msa0150660:CDS | 40.0% | |
| ACAATCAATGCCCATGCTAA+CGG | + | chr1_4:12251590-12251609 | None:intergenic | 40.0% | |
| !! | TAGCATGGGCATTGATTGTT+TGG | - | chr1_4:12251591-12251610 | Msa0150660:CDS | 40.0% |
| CAAGAGATTCATGCTAGACA+AGG | - | chr1_4:12252080-12252099 | Msa0150660:CDS | 40.0% | |
| GAAAACTACCAGTGTATTGG+TGG | + | chr1_4:12252373-12252392 | None:intergenic | 40.0% | |
| TTCAACCATGGTAGTAGTCA+TGG | - | chr1_4:12252410-12252429 | Msa0150660:intron | 40.0% | |
| GAAAACATCCAAAATCAGGC+AGG | + | chr1_4:12252723-12252742 | None:intergenic | 40.0% | |
| ATAAGGCCATGTAACTCTTG+CGG | + | chr1_4:12253105-12253124 | None:intergenic | 40.0% | |
| ! | TCTATGTACATGGCTGTTTC+TGG | - | chr1_4:12253142-12253161 | Msa0150660:intron | 40.0% |
| CCACAAGGTGTAAACTACTA+AGG | + | chr1_4:12253171-12253190 | None:intergenic | 40.0% | |
| CCTTAGTAGTTTACACCTTG+TGG | - | chr1_4:12253168-12253187 | Msa0150660:intron | 40.0% | |
| GTAGTATAGAACTTGCCACA+AGG | + | chr1_4:12253186-12253205 | None:intergenic | 40.0% | |
| TCAATGTCTTACGCCGATAA+CGG | - | chr1_4:12253213-12253232 | Msa0150660:intron | 40.0% | |
| CTATAGGAAGTCATGACTTC+AGG | + | chr1_4:12253251-12253270 | None:intergenic | 40.0% | |
| CTGAAGTCATGACTTCCTAT+AGG | - | chr1_4:12253249-12253268 | Msa0150660:intron | 40.0% | |
| TTACAACTGAGCTGAACTCA+TGG | - | chr1_4:12253496-12253515 | Msa0150660:intron | 40.0% | |
| TCTTCAAGGAATGTTTACGG+TGG | - | chr1_4:12253724-12253743 | Msa0150660:CDS | 40.0% | |
| ! | TGGAGCAAGCTTTTTGTTAG+AGG | - | chr1_4:12253835-12253854 | Msa0150660:intron | 40.0% |
| !! | GGTCTGCTTTTCATTTGCTG+AGG | - | chr1_4:12251475-12251494 | Msa0150660:CDS | 45.0% |
| !!! | GTTTTAGGGTCCGTTAGCAT+GGG | - | chr1_4:12251577-12251596 | Msa0150660:CDS | 45.0% |
| GATTGTTTGGCGTTGCAGTT+TGG | - | chr1_4:12251604-12251623 | Msa0150660:CDS | 45.0% | |
| GACAACCATGACTACTACCA+TGG | + | chr1_4:12252418-12252437 | None:intergenic | 45.0% | |
| TCAAACTCTTGAGTTTGCGG+TGG | - | chr1_4:12252442-12252461 | Msa0150660:intron | 45.0% | |
| CAGGCGTGTCAACAAACAAT+AGG | + | chr1_4:12252704-12252723 | None:intergenic | 45.0% | |
| TTAGAAGCTATGCGACCAGA+GGG | - | chr1_4:12253074-12253093 | Msa0150660:intron | 45.0% | |
| GGCGTAAGACATTGACAACA+AGG | + | chr1_4:12253208-12253227 | None:intergenic | 45.0% | |
| TGTGGTTCCAATCACGATTG+TGG | + | chr1_4:12253344-12253363 | None:intergenic | 45.0% | |
| AATGTTTACGGTGGCAACGA+TGG | - | chr1_4:12253733-12253752 | Msa0150660:CDS | 45.0% | |
| TGAAGGTTTCTGCATCAGTG+TGG | - | chr1_4:12253810-12253829 | Msa0150660:intron | 45.0% | |
| GTTTCTGCATCAGTGTGGAA+TGG | - | chr1_4:12253815-12253834 | Msa0150660:intron | 45.0% | |
| TCCTTGAGAATAACCTGCCT+AGG | + | chr1_4:12253866-12253885 | None:intergenic | 45.0% | |
| !!! | GGTTTTAGGGTCCGTTAGCA+TGG | - | chr1_4:12251576-12251595 | Msa0150660:CDS | 50.0% |
| GTTATCCCACGAAGGTAGCT+TGG | - | chr1_4:12251939-12251958 | Msa0150660:intron | 50.0% | |
| ACCAACCAAGCTACCTTCGT+GGG | + | chr1_4:12251947-12251966 | None:intergenic | 50.0% | |
| ! | TTGACACGCCTGCCTGATTT+TGG | - | chr1_4:12252712-12252731 | Msa0150660:intron | 50.0% |
| !! | CGCATAGCTTCTAAGGTCTC+AGG | + | chr1_4:12253068-12253087 | None:intergenic | 50.0% |
| CTCTGGTCGCATAGCTTCTA+AGG | + | chr1_4:12253075-12253094 | None:intergenic | 50.0% | |
| CTTAGAAGCTATGCGACCAG+AGG | - | chr1_4:12253073-12253092 | Msa0150660:intron | 50.0% | |
| AGGTGGTCCACAATCGTGAT+TGG | - | chr1_4:12253334-12253353 | Msa0150660:intron | 50.0% | |
| GGAACCACACTAGCTGTAGT+TGG | - | chr1_4:12253355-12253374 | Msa0150660:intron | 50.0% | |
| TTTGCAACTGTCGTCCCTTG+AGG | - | chr1_4:12253457-12253476 | Msa0150660:intron | 50.0% | |
| ! | AACATGTGGTGGCGCTTAAG+TGG | - | chr1_4:12253662-12253681 | Msa0150660:intron | 50.0% |
| GTTAGAGGTTATGCCTAGGC+AGG | - | chr1_4:12253850-12253869 | Msa0150660:intron | 50.0% | |
| GCCTAGGCAGGTTATTCTCA+AGG | - | chr1_4:12253862-12253881 | Msa0150660:intron | 50.0% | |
| TCCCACGAAGGTAGCTTGGT+TGG | - | chr1_4:12251943-12251962 | Msa0150660:intron | 55.0% | |
| CACCAACCAAGCTACCTTCG+TGG | + | chr1_4:12251948-12251967 | None:intergenic | 55.0% | |
| AGTTTCCAGGGTTTGGACCC+TGG | + | chr1_4:12252007-12252026 | None:intergenic | 55.0% | |
| GAGCTGCCGCAAGAGTTACA+TGG | - | chr1_4:12253096-12253115 | Msa0150660:intron | 55.0% | |
| !! | TGGCGCTTAAGTGGCTTGCT+CGG | - | chr1_4:12253671-12253690 | Msa0150660:intron | 55.0% |
| GCGGCCAACTACAGCTAGTG+TGG | + | chr1_4:12253362-12253381 | None:intergenic | 60.0% | |
| !! | GGCGCTTAAGTGGCTTGCTC+GGG | - | chr1_4:12253672-12253691 | Msa0150660:intron | 60.0% |
| !! | GCGCTTAAGTGGCTTGCTCG+GGG | - | chr1_4:12253673-12253692 | Msa0150660:intron | 60.0% |
| GAGGTCCAGGGTCCAAACCC+TGG | - | chr1_4:12251999-12252018 | Msa0150660:intron | 65.0% | |
| ACTCTTGCGGCAGCTCCCTC+TGG | + | chr1_4:12253092-12253111 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 12251280 | 12253937 | 12251280 | ID=Msa0150660;Name=Msa0150660 |
| chr1_4 | mRNA | 12251280 | 12253937 | 12251280 | ID=Msa0150660-mRNA-1;Parent=Msa0150660;Name=Msa0150660-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|0.66|1|1|6|0|244 |
| chr1_4 | exon | 12253917 | 12253937 | 12253917 | ID=Msa0150660-mRNA-1:exon:4978;Parent=Msa0150660-mRNA-1 |
| chr1_4 | exon | 12253721 | 12253816 | 12253721 | ID=Msa0150660-mRNA-1:exon:4977;Parent=Msa0150660-mRNA-1 |
| chr1_4 | exon | 12253540 | 12253633 | 12253540 | ID=Msa0150660-mRNA-1:exon:4976;Parent=Msa0150660-mRNA-1 |
| chr1_4 | exon | 12253418 | 12253449 | 12253418 | ID=Msa0150660-mRNA-1:exon:4975;Parent=Msa0150660-mRNA-1 |
| chr1_4 | exon | 12252054 | 12252185 | 12252054 | ID=Msa0150660-mRNA-1:exon:4974;Parent=Msa0150660-mRNA-1 |
| chr1_4 | exon | 12251280 | 12251639 | 12251280 | ID=Msa0150660-mRNA-1:exon:4973;Parent=Msa0150660-mRNA-1 |
| chr1_4 | CDS | 12253917 | 12253937 | 12253917 | ID=Msa0150660-mRNA-1:cds;Parent=Msa0150660-mRNA-1 |
| chr1_4 | CDS | 12253721 | 12253816 | 12253721 | ID=Msa0150660-mRNA-1:cds;Parent=Msa0150660-mRNA-1 |
| chr1_4 | CDS | 12253540 | 12253633 | 12253540 | ID=Msa0150660-mRNA-1:cds;Parent=Msa0150660-mRNA-1 |
| chr1_4 | CDS | 12253418 | 12253449 | 12253418 | ID=Msa0150660-mRNA-1:cds;Parent=Msa0150660-mRNA-1 |
| chr1_4 | CDS | 12252054 | 12252185 | 12252054 | ID=Msa0150660-mRNA-1:cds;Parent=Msa0150660-mRNA-1 |
| chr1_4 | CDS | 12251280 | 12251639 | 12251280 | ID=Msa0150660-mRNA-1:cds;Parent=Msa0150660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
