Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1076870 | XP_013463471.2 | 84.836 | 244 | 20 | 3 | 8 | 234 | 107 | 350 | 2.85e-138 | 402 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1076870 | sp|B9RK42|GPC1_RICCO | 69.636 | 247 | 52 | 3 | 8 | 234 | 124 | 367 | 4.70e-115 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1076870 | A0A396J8A6 | 84.836 | 244 | 20 | 3 | 8 | 234 | 107 | 350 | 1.36e-138 | 402 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009790 | Msa1076870 | 0.822339 | 2.497141e-53 | -8.615850e-47 |
| Msa0009900 | Msa1076870 | 0.872424 | 3.215315e-67 | -8.615850e-47 |
| Msa0150660 | Msa1076870 | 0.883229 | 5.353993e-71 | -8.615850e-47 |
| Msa0274030 | Msa1076870 | 0.876773 | 1.069618e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1076870 | MtrunA17_Chr2g0300041 | 84.836 | 244 | 20 | 3 | 8 | 234 | 107 | 350 | 2.62e-142 | 402 |
| Msa1076870 | MtrunA17_Chr4g0070761 | 70.588 | 221 | 42 | 3 | 8 | 208 | 108 | 325 | 4.50e-106 | 309 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1076870 | AT5G35460.1 | 69.456 | 239 | 49 | 4 | 8 | 225 | 121 | 356 | 6.99e-110 | 321 |
| Msa1076870 | AT5G35460.2 | 69.456 | 239 | 49 | 4 | 8 | 225 | 121 | 356 | 6.99e-110 | 321 |
Find 42 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATGTACATGGTTGTTTC+TGG | 0.125467 | 7_2:-75426103 | Msa1076870:CDS |
| ATGCAGAAACCTTCAGTATT+TGG | 0.172838 | 7_2:+75425443 | None:intergenic |
| GAAAACCACGGACAATTTAT+AGG | 0.229653 | 7_2:+75425465 | None:intergenic |
| TAGGATTTATCTTCGATATA+AGG | 0.285131 | 7_2:+75426126 | None:intergenic |
| TAGCATGGGCATTGATTGTT+TGG | 0.342012 | 7_2:-75427655 | Msa1076870:CDS |
| CTCTGGTCGCATAGCTTCTA+AGG | 0.350803 | 7_2:+75426173 | None:intergenic |
| GGCGCTTAAGTGGCTTGCTC+GGG | 0.354857 | 7_2:-75425573 | Msa1076870:CDS |
| TTAATGTTCATTCTTCTTCA+AGG | 0.358672 | 7_2:-75425535 | Msa1076870:CDS |
| TCTTCTTCAAGGAATGTTTA+CGG | 0.360145 | 7_2:-75425524 | Msa1076870:CDS |
| TGGCGCTTAAGTGGCTTGCT+CGG | 0.392782 | 7_2:-75425574 | Msa1076870:CDS |
| AAACAACCATGTACATAGAT+AGG | 0.418698 | 7_2:+75426107 | None:intergenic |
| TATGATTGATCATTTAGTAT+TGG | 0.423860 | 7_2:+75425331 | None:intergenic |
| ACTCTTGCGGCAGCTCCCTC+TGG | 0.428537 | 7_2:+75426156 | None:intergenic |
| GATTGTTTGGCGTTGCAGTT+TGG | 0.439343 | 7_2:-75427642 | Msa1076870:CDS |
| CGCATAGCTTCTAAGGTCTC+AGG | 0.442564 | 7_2:+75426180 | None:intergenic |
| GTTAGAGGTTATTCCTAGGC+AGG | 0.457747 | 7_2:-75425395 | Msa1076870:CDS |
| CCACAAGGTGTAAACTACTA+AGG | 0.465623 | 7_2:+75426077 | None:intergenic |
| AATTTATAGGACAAGAATAT+CGG | 0.491436 | 7_2:+75425478 | None:intergenic |
| AACATGTGGTGGCGCTTAAG+TGG | 0.500643 | 7_2:-75425583 | Msa1076870:CDS |
| AGTAGTTTACACCTTGTGGC+AGG | 0.502478 | 7_2:-75426073 | Msa1076870:intron |
| TCCTAGGCAGGTTATTCTCA+AGG | 0.504269 | 7_2:-75425383 | Msa1076870:CDS |
| CCTTAGTAGTTTACACCTTG+TGG | 0.519157 | 7_2:-75426077 | Msa1076870:CDS |
| TCCTTGAGAATAACCTGCCT+AGG | 0.544604 | 7_2:+75425382 | None:intergenic |
| CACAAGGTGTAAACTACTAA+GGG | 0.565958 | 7_2:+75426078 | None:intergenic |
| ACAATCAATGCCCATGCTAA+CGG | 0.568226 | 7_2:+75427659 | None:intergenic |
| GTTTCTGCATCAGTGTGGAA+TGG | 0.583826 | 7_2:-75425430 | Msa1076870:CDS |
| GAAGAATGAACATTAACAAG+CGG | 0.588184 | 7_2:+75425542 | None:intergenic |
| ATAAATCCTATCTATGTACA+TGG | 0.600797 | 7_2:-75426113 | Msa1076870:CDS |
| GAGCTGCCGCAAGAGTTACA+TGG | 0.601793 | 7_2:-75426149 | Msa1076870:CDS |
| CTTGTCCTATAAATTGTCCG+TGG | 0.603063 | 7_2:-75425470 | Msa1076870:CDS |
| AATGTTTACGGTGGCAACGA+TGG | 0.607699 | 7_2:-75425512 | Msa1076870:CDS |
| GCGCTTAAGTGGCTTGCTCG+GGG | 0.610530 | 7_2:-75425572 | Msa1076870:CDS |
| AGAAAGCAAATAACATGTGG+TGG | 0.624496 | 7_2:-75425594 | Msa1076870:CDS |
| ATAAGGCCATGTAACTCTTG+CGG | 0.630543 | 7_2:+75426143 | None:intergenic |
| TTAGAAGCTATGCGACCAGA+GGG | 0.634042 | 7_2:-75426171 | Msa1076870:CDS |
| CTTAGAAGCTATGCGACCAG+AGG | 0.642060 | 7_2:-75426172 | Msa1076870:CDS |
| CTCAGAAAGCAAATAACATG+TGG | 0.642551 | 7_2:-75425597 | Msa1076870:CDS |
| CTTCAGTATTTGGAAAACCA+CGG | 0.660595 | 7_2:+75425453 | None:intergenic |
| TGAAGGTTTCTGCATCAGTG+TGG | 0.682254 | 7_2:-75425435 | Msa1076870:CDS |
| TCTTCAAGGAATGTTTACGG+TGG | 0.685251 | 7_2:-75425521 | Msa1076870:CDS |
| GTAGTATAGAACCTGCCACA+AGG | 0.693592 | 7_2:+75426062 | None:intergenic |
| TTATGATGATGACAGCGATG+AGG | 0.704276 | 7_2:+75427955 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAATATTAAAAATTGT+AGG | + | chr7_2:75425741-75425760 | None:intergenic | 10.0% |
| !!! | TTATTAATCTTACATTTTTT+AGG | - | chr7_2:75427660-75427679 | Msa1076870:CDS | 10.0% |
| !!! | TATTAATCTTACATTTTTTA+GGG | - | chr7_2:75427661-75427680 | Msa1076870:CDS | 10.0% |
| !! | ATATGCATTTGATTCAATAT+TGG | - | chr7_2:75425819-75425838 | Msa1076870:intron | 20.0% |
| !! | TCTATGTGAACAAAAATTAA+TGG | + | chr7_2:75425958-75425977 | None:intergenic | 20.0% |
| !!! | ACACCAAATAATTTTTAAGA+AGG | - | chr7_2:75426027-75426046 | Msa1076870:intron | 20.0% |
| !!! | GATTTATATATTAGTTTCCA+GGG | + | chr7_2:75426069-75426088 | None:intergenic | 20.0% |
| !!! | AGATTTATATATTAGTTTCC+AGG | + | chr7_2:75426070-75426089 | None:intergenic | 20.0% |
| !!! | TTATTTTCTTCTATTTATGC+TGG | - | chr7_2:75426360-75426379 | Msa1076870:intron | 20.0% |
| !!! | GCAAATTTACAATTTTACAT+TGG | - | chr7_2:75426613-75426632 | Msa1076870:intron | 20.0% |
| !!! | TTTACAATTTTACATTGGTT+TGG | - | chr7_2:75426618-75426637 | Msa1076870:intron | 20.0% |
| !!! | GATCAAAATTTTCCATTTTA+AGG | + | chr7_2:75426644-75426663 | None:intergenic | 20.0% |
| !! | GGTATGATGAATATTATAAA+TGG | + | chr7_2:75427042-75427061 | None:intergenic | 20.0% |
| !! | TAATATTCATCATACCTTAA+TGG | - | chr7_2:75427046-75427065 | Msa1076870:intron | 20.0% |
| !! | AATTTATAGGACAAGAATAT+CGG | + | chr7_2:75427821-75427840 | None:intergenic | 20.0% |
| !! | TATGATTGATCATTTAGTAT+TGG | + | chr7_2:75427968-75427987 | None:intergenic | 20.0% |
| ! | GTAAACCAAAAAGATTGTAT+TGG | + | chr7_2:75425470-75425489 | None:intergenic | 25.0% |
| ! | CATTCTTTGGATAAAAAAGA+AGG | + | chr7_2:75425492-75425511 | None:intergenic | 25.0% |
| ! | AGAAAAAACTTCTCATTCTT+TGG | + | chr7_2:75425505-75425524 | None:intergenic | 25.0% |
| !!! | AAAGAATGAGAAGTTTTTTC+TGG | - | chr7_2:75425504-75425523 | Msa1076870:CDS | 25.0% |
| ! | ATGTGTGATTTATTTAAGTG+CGG | - | chr7_2:75425605-75425624 | Msa1076870:CDS | 25.0% |
| !! | ATTTATTTAAGTGCGGTTTT+AGG | - | chr7_2:75425612-75425631 | Msa1076870:CDS | 25.0% |
| !! | TTTATTTAAGTGCGGTTTTA+GGG | - | chr7_2:75425613-75425632 | Msa1076870:CDS | 25.0% |
| !! | ATAACCTTTTGCAAAATCAT+TGG | - | chr7_2:75425774-75425793 | Msa1076870:intron | 25.0% |
| ! | AAAGCATATAATATCTCTGA+TGG | - | chr7_2:75425858-75425877 | Msa1076870:intron | 25.0% |
| !!! | AAAATTAATGGACTAAGCTA+AGG | + | chr7_2:75425946-75425965 | None:intergenic | 25.0% |
| ! | CCTCCTTCTTAAAAATTATT+TGG | + | chr7_2:75426033-75426052 | None:intergenic | 25.0% |
| !!! | CCAAATAATTTTTAAGAAGG+AGG | - | chr7_2:75426030-75426049 | Msa1076870:intron | 25.0% |
| !! | GACTTTTACTACTAAACTTA+AGG | + | chr7_2:75426159-75426178 | None:intergenic | 25.0% |
| ! | TTCGCACTTAAAAGTTTATA+AGG | - | chr7_2:75426302-75426321 | Msa1076870:intron | 25.0% |
| ! | TTTACGTGTTGCAATATATT+TGG | - | chr7_2:75426691-75426710 | Msa1076870:intron | 25.0% |
| ! | AATATATTTGGTATCTGGTT+TGG | - | chr7_2:75426703-75426722 | Msa1076870:intron | 25.0% |
| ! | AAAAGAAAACATCCAAAATC+AGG | + | chr7_2:75426777-75426796 | None:intergenic | 25.0% |
| ! | TATCAAATATTGTCATGCTT+AGG | + | chr7_2:75426954-75426973 | None:intergenic | 25.0% |
| ! | TATTTGATAGATGTTACCAT+TGG | - | chr7_2:75426965-75426984 | Msa1076870:intron | 25.0% |
| ! | CTAGAGAAAAAAATCCATTA+AGG | + | chr7_2:75427063-75427082 | None:intergenic | 25.0% |
| !!! | CTTAATGGATTTTTTTCTCT+AGG | - | chr7_2:75427061-75427080 | Msa1076870:intron | 25.0% |
| ! | TAGGATTTATCTTCGATATA+AGG | + | chr7_2:75427173-75427192 | None:intergenic | 25.0% |
| ! | ATAAATCCTATCTATGTACA+TGG | - | chr7_2:75427183-75427202 | Msa1076870:intron | 25.0% |
| ! | TTATTTATCATTGCTTCAAG+TGG | - | chr7_2:75427472-75427491 | Msa1076870:intron | 25.0% |
| !!! | GAAGGTTTTAAATAATAGTC+AGG | + | chr7_2:75427576-75427595 | None:intergenic | 25.0% |
| ! | TTAATGTTCATTCTTCTTCA+AGG | - | chr7_2:75427761-75427780 | Msa1076870:intron | 25.0% |
| AACTATTGTTCATGTGTTTC+AGG | - | chr7_2:75425429-75425448 | Msa1076870:CDS | 30.0% | |
| ! | CTATGCCAATACAATCTTTT+TGG | - | chr7_2:75425462-75425481 | Msa1076870:CDS | 30.0% |
| !! | AAAATCATTGGCTTCTACTA+TGG | - | chr7_2:75425786-75425805 | Msa1076870:intron | 30.0% |
| ! | TTCTACTATCATGATTTTCG+TGG | - | chr7_2:75425907-75425926 | Msa1076870:intron | 30.0% |
| ! | ATATATTAGTTTCCAGGGTT+TGG | + | chr7_2:75426064-75426083 | None:intergenic | 30.0% |
| ! | TTCAAAGTTGATCACGTATA+CGG | + | chr7_2:75426181-75426200 | None:intergenic | 30.0% |
| !!! | TTGATCATAAGTTTTGAAGC+TGG | - | chr7_2:75426232-75426251 | Msa1076870:intron | 30.0% |
| AATGAAAACTACCAGTGTAT+TGG | + | chr7_2:75426426-75426445 | None:intergenic | 30.0% | |
| !! | TTTGATGTTGATTTCAACCA+TGG | - | chr7_2:75426448-75426467 | Msa1076870:intron | 30.0% |
| GATCAATGTTATTCAGTATC+TGG | - | chr7_2:75426660-75426679 | Msa1076870:intron | 30.0% | |
| GTTGCAATATATTTGGTATC+TGG | - | chr7_2:75426698-75426717 | Msa1076870:intron | 30.0% | |
| TGTCAACAAACAATAGGATT+TGG | + | chr7_2:75426748-75426767 | None:intergenic | 30.0% | |
| ACAGATAAGTAGTAATGCAA+GGG | + | chr7_2:75426813-75426832 | None:intergenic | 30.0% | |
| TGTCAGATGTAAAACCATTT+AGG | - | chr7_2:75426830-75426849 | Msa1076870:intron | 30.0% | |
| GTCAGATGTAAAACCATTTA+GGG | - | chr7_2:75426831-75426850 | Msa1076870:intron | 30.0% | |
| TCAGATGTAAAACCATTTAG+GGG | - | chr7_2:75426832-75426851 | Msa1076870:intron | 30.0% | |
| ATATTGTTAAGACCCCTAAA+TGG | + | chr7_2:75426847-75426866 | None:intergenic | 30.0% | |
| AACTGTACAACATGAAACAT+GGG | + | chr7_2:75426881-75426900 | None:intergenic | 30.0% | |
| TAACTGTACAACATGAAACA+TGG | + | chr7_2:75426882-75426901 | None:intergenic | 30.0% | |
| !!! | GGATTTTTTTCTCTAGGATT+TGG | - | chr7_2:75427067-75427086 | Msa1076870:intron | 30.0% |
| ! | TGGTTTTCTTTACTATTCGA+TGG | - | chr7_2:75427087-75427106 | Msa1076870:intron | 30.0% |
| ! | TTTTCTTTACTATTCGATGG+TGG | - | chr7_2:75427090-75427109 | Msa1076870:intron | 30.0% |
| AAACAACCATGTACATAGAT+AGG | + | chr7_2:75427192-75427211 | None:intergenic | 30.0% | |
| GATCTCTTAAAAACCGTTAT+CGG | + | chr7_2:75427280-75427299 | None:intergenic | 30.0% | |
| TAGACCAATAGAGTTTCAAA+AGG | - | chr7_2:75427365-75427384 | Msa1076870:intron | 30.0% | |
| CTTGATATTGTAGAGAAAAG+CGG | + | chr7_2:75427432-75427451 | None:intergenic | 30.0% | |
| ! | GCTTTTCTCTACAATATCAA+GGG | - | chr7_2:75427431-75427450 | Msa1076870:intron | 30.0% |
| TACAAAAACAGTTTGAAGGA+AGG | + | chr7_2:75427594-75427613 | None:intergenic | 30.0% | |
| ACTGTACAAAAACAGTTTGA+AGG | + | chr7_2:75427598-75427617 | None:intergenic | 30.0% | |
| GAAGAATGAACATTAACAAG+CGG | + | chr7_2:75427757-75427776 | None:intergenic | 30.0% | |
| TCTTCTTCAAGGAATGTTTA+CGG | - | chr7_2:75427772-75427791 | Msa1076870:CDS | 30.0% | |
| ! | TTTTGTTAGAGGTTATTCCT+AGG | - | chr7_2:75427897-75427916 | Msa1076870:intron | 30.0% |
| GCTAGGATGTCAAATTACTA+AGG | + | chr7_2:75425563-75425582 | None:intergenic | 35.0% | |
| ! | GTTCTTATCCATCTTTTACG+AGG | - | chr7_2:75425706-75425725 | Msa1076870:intron | 35.0% |
| AGAACATACCTCGTAAAAGA+TGG | + | chr7_2:75425717-75425736 | None:intergenic | 35.0% | |
| ! | GAAGCCAATGATTTTGCAAA+AGG | + | chr7_2:75425781-75425800 | None:intergenic | 35.0% |
| ! | ATTTTCGTGGTATCTAGCAT+TGG | - | chr7_2:75425920-75425939 | Msa1076870:intron | 35.0% |
| !! | AGATATTTGTTATCCCACGA+AGG | - | chr7_2:75425981-75426000 | Msa1076870:intron | 35.0% |
| !! | AATTTTTAAGAAGGAGGTCC+AGG | - | chr7_2:75426036-75426055 | Msa1076870:intron | 35.0% |
| !! | ATTTTTAAGAAGGAGGTCCA+GGG | - | chr7_2:75426037-75426056 | Msa1076870:intron | 35.0% |
| GTTACACATAAACACACAGA+AGG | + | chr7_2:75426329-75426348 | None:intergenic | 35.0% | |
| !!! | TATTGGTGGTGTTTTTTGTG+GGG | + | chr7_2:75426409-75426428 | None:intergenic | 35.0% |
| !!! | GTATTGGTGGTGTTTTTTGT+GGG | + | chr7_2:75426410-75426429 | None:intergenic | 35.0% |
| !!! | TGTATTGGTGGTGTTTTTTG+TGG | + | chr7_2:75426411-75426430 | None:intergenic | 35.0% |
| AAAAAACACCACCAATACAC+TGG | - | chr7_2:75426412-75426431 | Msa1076870:intron | 35.0% | |
| TTGTCAAACTCTTGAGTTTG+CGG | - | chr7_2:75426489-75426508 | Msa1076870:intron | 35.0% | |
| TCGAGTAAACTCTGATAACA+TGG | - | chr7_2:75426571-75426590 | Msa1076870:intron | 35.0% | |
| !! | ACATTGGTTTGGCCTTAAAA+TGG | - | chr7_2:75426629-75426648 | Msa1076870:intron | 35.0% |
| TTGGTTCAACAACTAGTAGT+AGG | + | chr7_2:75426729-75426748 | None:intergenic | 35.0% | |
| GACAGATAAGTAGTAATGCA+AGG | + | chr7_2:75426814-75426833 | None:intergenic | 35.0% | |
| ACTGTACAACATGAAACATG+GGG | + | chr7_2:75426880-75426899 | None:intergenic | 35.0% | |
| GATAGATGTTACCATTGGAA+TGG | - | chr7_2:75426970-75426989 | Msa1076870:intron | 35.0% | |
| CTATCACAAATCCATTCCAA+TGG | + | chr7_2:75426984-75427003 | None:intergenic | 35.0% | |
| GGATGCATAAAGTAACGTAA+AGG | + | chr7_2:75427021-75427040 | None:intergenic | 35.0% | |
| ! | TCTATGTACATGGTTGTTTC+TGG | - | chr7_2:75427193-75427212 | Msa1076870:intron | 35.0% |
| CACAAGGTGTAAACTACTAA+GGG | + | chr7_2:75427221-75427240 | None:intergenic | 35.0% | |
| GAGAAGAGATGATTACCTAT+AGG | + | chr7_2:75427318-75427337 | None:intergenic | 35.0% | |
| GGTAATCATCTCTTCTCATT+CGG | - | chr7_2:75427321-75427340 | Msa1076870:intron | 35.0% | |
| ! | TGGTCTAAAGCAAACATAAC+TGG | + | chr7_2:75427352-75427371 | None:intergenic | 35.0% |
| ACCAATAGAGTTTCAAAAGG+TGG | - | chr7_2:75427368-75427387 | Msa1076870:intron | 35.0% | |
| !!! | ACCACCTTTTGAAACTCTAT+TGG | + | chr7_2:75427372-75427391 | None:intergenic | 35.0% |
| ! | CGCTTTTCTCTACAATATCA+AGG | - | chr7_2:75427430-75427449 | Msa1076870:intron | 35.0% |
| GCTTGATCTTATAACCTCAA+GGG | + | chr7_2:75427525-75427544 | None:intergenic | 35.0% | |
| AGCTTGATCTTATAACCTCA+AGG | + | chr7_2:75427526-75427545 | None:intergenic | 35.0% | |
| ! | TTACAACTGAGTTGAACTCA+TGG | - | chr7_2:75427547-75427566 | Msa1076870:intron | 35.0% |
| !!! | GTACAGTATGTGTTTTAGAG+TGG | - | chr7_2:75427611-75427630 | Msa1076870:intron | 35.0% |
| CTCAGAAAGCAAATAACATG+TGG | - | chr7_2:75427699-75427718 | Msa1076870:intron | 35.0% | |
| AGAAAGCAAATAACATGTGG+TGG | - | chr7_2:75427702-75427721 | Msa1076870:intron | 35.0% | |
| GAAAACCACGGACAATTTAT+AGG | + | chr7_2:75427834-75427853 | None:intergenic | 35.0% | |
| CTTCAGTATTTGGAAAACCA+CGG | + | chr7_2:75427846-75427865 | None:intergenic | 35.0% | |
| ATGCAGAAACCTTCAGTATT+TGG | + | chr7_2:75427856-75427875 | None:intergenic | 35.0% | |
| ! | TTATGATGATGACAGCGATG+AGG | + | chr7_2:75425344-75425363 | None:intergenic | 40.0% |
| TCATCGCTGTCATCATCATA+AGG | - | chr7_2:75425343-75425362 | Msa1076870:CDS | 40.0% | |
| TTGACATCCTAGCACAAGAA+TGG | - | chr7_2:75425570-75425589 | Msa1076870:CDS | 40.0% | |
| CAATGAACCATTCTTGTGCT+AGG | + | chr7_2:75425580-75425599 | None:intergenic | 40.0% | |
| CTAGCACAAGAATGGTTCAT+TGG | - | chr7_2:75425578-75425597 | Msa1076870:CDS | 40.0% | |
| ACAATCAATGCCCATGCTAA+CGG | + | chr7_2:75425640-75425659 | None:intergenic | 40.0% | |
| !! | TAGCATGGGCATTGATTGTT+TGG | - | chr7_2:75425641-75425660 | Msa1076870:CDS | 40.0% |
| CAAGAGATTCATGCTAGACA+AGG | - | chr7_2:75426130-75426149 | Msa1076870:CDS | 40.0% | |
| GAAAACTACCAGTGTATTGG+TGG | + | chr7_2:75426423-75426442 | None:intergenic | 40.0% | |
| TTCAACCATGGTAGTAGTCA+TGG | - | chr7_2:75426460-75426479 | Msa1076870:intron | 40.0% | |
| GAAAACATCCAAAATCAGGC+AGG | + | chr7_2:75426773-75426792 | None:intergenic | 40.0% | |
| ATAAGGCCATGTAACTCTTG+CGG | + | chr7_2:75427156-75427175 | None:intergenic | 40.0% | |
| CCACAAGGTGTAAACTACTA+AGG | + | chr7_2:75427222-75427241 | None:intergenic | 40.0% | |
| CCTTAGTAGTTTACACCTTG+TGG | - | chr7_2:75427219-75427238 | Msa1076870:intron | 40.0% | |
| GGCGTAAGACATTGACAATA+AGG | + | chr7_2:75427259-75427278 | None:intergenic | 40.0% | |
| TCAATGTCTTACGCCGATAA+CGG | - | chr7_2:75427264-75427283 | Msa1076870:intron | 40.0% | |
| CTATAGGAAGTCATGACTTC+AGG | + | chr7_2:75427302-75427321 | None:intergenic | 40.0% | |
| CTGAAGTCATGACTTCCTAT+AGG | - | chr7_2:75427300-75427319 | Msa1076870:intron | 40.0% | |
| TCTTCAAGGAATGTTTACGG+TGG | - | chr7_2:75427775-75427794 | Msa1076870:CDS | 40.0% | |
| CTTGTCCTATAAATTGTCCG+TGG | - | chr7_2:75427826-75427845 | Msa1076870:CDS | 40.0% | |
| ! | CGTGGTTTTCCAAATACTGA+AGG | - | chr7_2:75427844-75427863 | Msa1076870:CDS | 40.0% |
| ! | TGGAGCAAGCTTTTTGTTAG+AGG | - | chr7_2:75427886-75427905 | Msa1076870:intron | 40.0% |
| !! | GGTCTGCTTTTCATTTGCTG+AGG | - | chr7_2:75425525-75425544 | Msa1076870:CDS | 45.0% |
| !!! | GTTTTAGGGTCCGTTAGCAT+GGG | - | chr7_2:75425627-75425646 | Msa1076870:CDS | 45.0% |
| GATTGTTTGGCGTTGCAGTT+TGG | - | chr7_2:75425654-75425673 | Msa1076870:CDS | 45.0% | |
| GACAACCATGACTACTACCA+TGG | + | chr7_2:75426468-75426487 | None:intergenic | 45.0% | |
| TCAAACTCTTGAGTTTGCGG+TGG | - | chr7_2:75426492-75426511 | Msa1076870:intron | 45.0% | |
| CAGGCGTGTCAACAAACAAT+AGG | + | chr7_2:75426754-75426773 | None:intergenic | 45.0% | |
| TTAGAAGCTATGCGACCAGA+GGG | - | chr7_2:75427125-75427144 | Msa1076870:intron | 45.0% | |
| AGTAGTTTACACCTTGTGGC+AGG | - | chr7_2:75427223-75427242 | Msa1076870:intron | 45.0% | |
| GTAGTATAGAACCTGCCACA+AGG | + | chr7_2:75427237-75427256 | None:intergenic | 45.0% | |
| TGTGGTTCCAATCACGATTG+TGG | + | chr7_2:75427395-75427414 | None:intergenic | 45.0% | |
| AATGTTTACGGTGGCAACGA+TGG | - | chr7_2:75427784-75427803 | Msa1076870:CDS | 45.0% | |
| TGAAGGTTTCTGCATCAGTG+TGG | - | chr7_2:75427861-75427880 | Msa1076870:intron | 45.0% | |
| GTTTCTGCATCAGTGTGGAA+TGG | - | chr7_2:75427866-75427885 | Msa1076870:intron | 45.0% | |
| GTTAGAGGTTATTCCTAGGC+AGG | - | chr7_2:75427901-75427920 | Msa1076870:intron | 45.0% | |
| TCCTAGGCAGGTTATTCTCA+AGG | - | chr7_2:75427913-75427932 | Msa1076870:intron | 45.0% | |
| TCCTTGAGAATAACCTGCCT+AGG | + | chr7_2:75427917-75427936 | None:intergenic | 45.0% | |
| !!! | GGTTTTAGGGTCCGTTAGCA+TGG | - | chr7_2:75425626-75425645 | Msa1076870:CDS | 50.0% |
| GTTATCCCACGAAGGTAGCT+TGG | - | chr7_2:75425989-75426008 | Msa1076870:intron | 50.0% | |
| ACCAACCAAGCTACCTTCGT+GGG | + | chr7_2:75425997-75426016 | None:intergenic | 50.0% | |
| ! | TTGACACGCCTGCCTGATTT+TGG | - | chr7_2:75426762-75426781 | Msa1076870:intron | 50.0% |
| !! | CGCATAGCTTCTAAGGTCTC+AGG | + | chr7_2:75427119-75427138 | None:intergenic | 50.0% |
| CTCTGGTCGCATAGCTTCTA+AGG | + | chr7_2:75427126-75427145 | None:intergenic | 50.0% | |
| CTTAGAAGCTATGCGACCAG+AGG | - | chr7_2:75427124-75427143 | Msa1076870:intron | 50.0% | |
| AGGTGGTCCACAATCGTGAT+TGG | - | chr7_2:75427385-75427404 | Msa1076870:intron | 50.0% | |
| GGAACCACACTAGCTGTAGT+TGG | - | chr7_2:75427406-75427425 | Msa1076870:intron | 50.0% | |
| TTTGCAACTGTCGTCCCTTG+AGG | - | chr7_2:75427508-75427527 | Msa1076870:intron | 50.0% | |
| ! | AACATGTGGTGGCGCTTAAG+TGG | - | chr7_2:75427713-75427732 | Msa1076870:intron | 50.0% |
| TCCCACGAAGGTAGCTTGGT+TGG | - | chr7_2:75425993-75426012 | Msa1076870:intron | 55.0% | |
| CACCAACCAAGCTACCTTCG+TGG | + | chr7_2:75425998-75426017 | None:intergenic | 55.0% | |
| AGTTTCCAGGGTTTGGACCC+TGG | + | chr7_2:75426057-75426076 | None:intergenic | 55.0% | |
| GAGCTGCCGCAAGAGTTACA+TGG | - | chr7_2:75427147-75427166 | Msa1076870:intron | 55.0% | |
| !! | TGGCGCTTAAGTGGCTTGCT+CGG | - | chr7_2:75427722-75427741 | Msa1076870:intron | 55.0% |
| GCGGCCAACTACAGCTAGTG+TGG | + | chr7_2:75427413-75427432 | None:intergenic | 60.0% | |
| !! | GGCGCTTAAGTGGCTTGCTC+GGG | - | chr7_2:75427723-75427742 | Msa1076870:intron | 60.0% |
| !! | GCGCTTAAGTGGCTTGCTCG+GGG | - | chr7_2:75427724-75427743 | Msa1076870:intron | 60.0% |
| GAGGTCCAGGGTCCAAACCC+TGG | - | chr7_2:75426049-75426068 | Msa1076870:intron | 65.0% | |
| ACTCTTGCGGCAGCTCCCTC+TGG | + | chr7_2:75427143-75427162 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 75425330 | 75427988 | 75425330 | ID=Msa1076870;Name=Msa1076870 |
| chr7_2 | mRNA | 75425330 | 75427988 | 75425330 | ID=Msa1076870-mRNA-1;Parent=Msa1076870;Name=Msa1076870-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|0.8|1|1|5|0|234 |
| chr7_2 | exon | 75427968 | 75427988 | 75427968 | ID=Msa1076870-mRNA-1:exon:18025;Parent=Msa1076870-mRNA-1 |
| chr7_2 | exon | 75427772 | 75427867 | 75427772 | ID=Msa1076870-mRNA-1:exon:18024;Parent=Msa1076870-mRNA-1 |
| chr7_2 | exon | 75427619 | 75427684 | 75427619 | ID=Msa1076870-mRNA-1:exon:18023;Parent=Msa1076870-mRNA-1 |
| chr7_2 | exon | 75426074 | 75426235 | 75426074 | ID=Msa1076870-mRNA-1:exon:18022;Parent=Msa1076870-mRNA-1 |
| chr7_2 | exon | 75425330 | 75425689 | 75425330 | ID=Msa1076870-mRNA-1:exon:18021;Parent=Msa1076870-mRNA-1 |
| chr7_2 | CDS | 75427968 | 75427988 | 75427968 | ID=Msa1076870-mRNA-1:cds;Parent=Msa1076870-mRNA-1 |
| chr7_2 | CDS | 75427772 | 75427867 | 75427772 | ID=Msa1076870-mRNA-1:cds;Parent=Msa1076870-mRNA-1 |
| chr7_2 | CDS | 75427619 | 75427684 | 75427619 | ID=Msa1076870-mRNA-1:cds;Parent=Msa1076870-mRNA-1 |
| chr7_2 | CDS | 75426074 | 75426235 | 75426074 | ID=Msa1076870-mRNA-1:cds;Parent=Msa1076870-mRNA-1 |
| chr7_2 | CDS | 75425330 | 75425689 | 75425330 | ID=Msa1076870-mRNA-1:cds;Parent=Msa1076870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
