Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0274030 | XP_013463471.2 | 85.098 | 255 | 19 | 3 | 8 | 254 | 107 | 350 | 4.86e-145 | 420 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0274030 | sp|B9RK42|GPC1_RICCO | 70.543 | 258 | 51 | 3 | 8 | 254 | 124 | 367 | 7.49e-122 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0274030 | A0A396J8A6 | 85.098 | 255 | 19 | 3 | 8 | 254 | 107 | 350 | 2.32e-145 | 420 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009790 | Msa0274030 | 0.875778 | 2.356987e-68 | -8.615850e-47 |
| Msa0009900 | Msa0274030 | 0.966605 | 3.817751e-126 | -8.615850e-47 |
| Msa0150660 | Msa0274030 | 0.957225 | 4.530301e-115 | -8.615850e-47 |
| Msa0274030 | Msa1076870 | 0.876773 | 1.069618e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0274030 | MtrunA17_Chr2g0300041 | 85.098 | 255 | 19 | 3 | 8 | 254 | 107 | 350 | 4.47e-149 | 420 |
| Msa0274030 | MtrunA17_Chr4g0070761 | 70.259 | 232 | 44 | 3 | 8 | 228 | 108 | 325 | 2.68e-111 | 323 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0274030 | AT5G35460.1 | 70.400 | 250 | 48 | 4 | 8 | 245 | 121 | 356 | 1.31e-116 | 339 |
| Msa0274030 | AT5G35460.2 | 70.400 | 250 | 48 | 4 | 8 | 245 | 121 | 356 | 1.31e-116 | 339 |
Find 44 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATGTACATGGCTGTTTC+TGG | 0.136807 | 2_3:-5794436 | Msa0274030:CDS |
| ATGCAGAAACCTTCAGTATT+TGG | 0.172838 | 2_3:+5793776 | None:intergenic |
| GAAAACCACGGACAATTTAT+AGG | 0.229653 | 2_3:+5793798 | None:intergenic |
| TAGGATTTATCTTCGATATA+AGG | 0.285131 | 2_3:+5794459 | None:intergenic |
| ATATGCATTTGATTCAATAT+TGG | 0.292604 | 2_3:-5795809 | Msa0274030:CDS |
| TAGCATGGGCATTGATTGTT+TGG | 0.342012 | 2_3:-5795987 | Msa0274030:CDS |
| CTCTGGTCGCATAGCTTCTA+AGG | 0.350803 | 2_3:+5794506 | None:intergenic |
| GGCGCTTAAGTGGCTTGCTC+GGG | 0.354857 | 2_3:-5793906 | Msa0274030:CDS |
| TTAATGTTCATTCTTCTTCA+AGG | 0.358672 | 2_3:-5793868 | Msa0274030:CDS |
| TCTTCTTCAAGGAATGTTTA+CGG | 0.360145 | 2_3:-5793857 | Msa0274030:CDS |
| TGGCGCTTAAGTGGCTTGCT+CGG | 0.392782 | 2_3:-5793907 | Msa0274030:CDS |
| TATGATTGATCATTTAGTAT+TGG | 0.423860 | 2_3:+5793664 | None:intergenic |
| AAACAGCCATGTACATAGAT+AGG | 0.426768 | 2_3:+5794440 | None:intergenic |
| ACTCTTGCGGCAGCTCCCTC+TGG | 0.428537 | 2_3:+5794489 | None:intergenic |
| GATTGTTTGGCGTTGCAGTT+TGG | 0.439343 | 2_3:-5795974 | Msa0274030:CDS |
| CGCATAGCTTCTAAGGTCTC+AGG | 0.442564 | 2_3:+5794513 | None:intergenic |
| CCACAAGGTGTAAACTACTA+AGG | 0.465623 | 2_3:+5794410 | None:intergenic |
| GTTAGAGGTTATGCCTAGGC+AGG | 0.483117 | 2_3:-5793728 | Msa0274030:CDS |
| AATTTATAGGACAAGAATAT+CGG | 0.491436 | 2_3:+5793811 | None:intergenic |
| AACATGTGGTGGCGCTTAAG+TGG | 0.500643 | 2_3:-5793916 | Msa0274030:CDS |
| AGTAGTTTACACCTTGTGGC+AGG | 0.502478 | 2_3:-5794406 | Msa0274030:intron |
| CCTTAGTAGTTTACACCTTG+TGG | 0.519157 | 2_3:-5794410 | Msa0274030:CDS |
| AGAACATACCTGGTAAAAGA+TGG | 0.526879 | 2_3:+5795914 | None:intergenic |
| GCCTAGGCAGGTTATTCTCA+AGG | 0.551205 | 2_3:-5793716 | Msa0274030:CDS |
| TCCTTGAGAATAACCTGCCT+AGG | 0.556675 | 2_3:+5793715 | None:intergenic |
| CACAAGGTGTAAACTACTAA+GGG | 0.565958 | 2_3:+5794411 | None:intergenic |
| ACAATCAATGCCCATGCTAA+CGG | 0.568226 | 2_3:+5795991 | None:intergenic |
| ATAAATCCTATCTATGTACA+TGG | 0.579385 | 2_3:-5794446 | Msa0274030:CDS |
| GTTTCTGCATCAGTGTGGAA+TGG | 0.583826 | 2_3:-5793763 | Msa0274030:CDS |
| GAAGAATGAACATTAACAAG+CGG | 0.588184 | 2_3:+5793875 | None:intergenic |
| GAGCTGCCGCAAGAGTTACA+TGG | 0.601793 | 2_3:-5794482 | Msa0274030:CDS |
| CTTGTCCTATAAATTGTCCG+TGG | 0.603063 | 2_3:-5793803 | Msa0274030:CDS |
| AATGTTTACGGTGGCAACGA+TGG | 0.607699 | 2_3:-5793845 | Msa0274030:CDS |
| GCGCTTAAGTGGCTTGCTCG+GGG | 0.610530 | 2_3:-5793905 | Msa0274030:CDS |
| AGAAAGCAAATAACATGTGG+TGG | 0.624496 | 2_3:-5793927 | Msa0274030:CDS |
| ATAAGGCCATGTAACTCTTG+CGG | 0.630543 | 2_3:+5794476 | None:intergenic |
| TTAGAAGCTATGCGACCAGA+GGG | 0.634042 | 2_3:-5794504 | Msa0274030:CDS |
| CTTAGAAGCTATGCGACCAG+AGG | 0.642060 | 2_3:-5794505 | Msa0274030:CDS |
| CTCAGAAAGCAAATAACATG+TGG | 0.642551 | 2_3:-5793930 | Msa0274030:CDS |
| CTTCAGTATTTGGAAAACCA+CGG | 0.660595 | 2_3:+5793786 | None:intergenic |
| TGAAGGTTTCTGCATCAGTG+TGG | 0.682254 | 2_3:-5793768 | Msa0274030:CDS |
| TCTTCAAGGAATGTTTACGG+TGG | 0.685251 | 2_3:-5793854 | Msa0274030:CDS |
| GTAGTATAGAACCTGCCACA+AGG | 0.693592 | 2_3:+5794395 | None:intergenic |
| TTATGATGATGACAGCGATG+AGG | 0.704276 | 2_3:+5796287 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAATATTAAAAATTGT+AGG | + | chr2_3:5794074-5794093 | None:intergenic | 10.0% |
| !!! | TTATTAATCTTACATTTTTT+AGG | - | chr2_3:5795992-5796011 | Msa0274030:CDS | 10.0% |
| !!! | TATTAATCTTACATTTTTTA+GGG | - | chr2_3:5795993-5796012 | Msa0274030:CDS | 10.0% |
| !! | ATATGCATTTGATTCAATAT+TGG | - | chr2_3:5794152-5794171 | Msa0274030:intron | 20.0% |
| !! | TCTATGTGAACAAAAATTAA+TGG | + | chr2_3:5794291-5794310 | None:intergenic | 20.0% |
| !!! | ACACCAAATAATTTTTAAGA+AGG | - | chr2_3:5794360-5794379 | Msa0274030:intron | 20.0% |
| !!! | GATTTATATATTAGTTTCCA+GGG | + | chr2_3:5794402-5794421 | None:intergenic | 20.0% |
| !!! | AGATTTATATATTAGTTTCC+AGG | + | chr2_3:5794403-5794422 | None:intergenic | 20.0% |
| !!! | TTATTTTCTTCTATTTATGC+TGG | - | chr2_3:5794693-5794712 | Msa0274030:intron | 20.0% |
| !!! | GCAAATTTACAATTTTACAT+TGG | - | chr2_3:5794946-5794965 | Msa0274030:intron | 20.0% |
| !!! | TTTACAATTTTACATTGGTT+TGG | - | chr2_3:5794951-5794970 | Msa0274030:intron | 20.0% |
| !!! | GATCAAAATTTTCCATTTTA+AGG | + | chr2_3:5794977-5794996 | None:intergenic | 20.0% |
| !! | GGTATGATGAATATTATAAA+TGG | + | chr2_3:5795375-5795394 | None:intergenic | 20.0% |
| !! | TAATATTCATCATACCTTAA+TGG | - | chr2_3:5795379-5795398 | Msa0274030:intron | 20.0% |
| !! | AATTTATAGGACAAGAATAT+CGG | + | chr2_3:5796153-5796172 | None:intergenic | 20.0% |
| !! | TATGATTGATCATTTAGTAT+TGG | + | chr2_3:5796300-5796319 | None:intergenic | 20.0% |
| ! | GTAAACCAAAAAGATTGTAT+TGG | + | chr2_3:5793803-5793822 | None:intergenic | 25.0% |
| ! | CATTCTTTGGATAAAAAAGA+AGG | + | chr2_3:5793825-5793844 | None:intergenic | 25.0% |
| ! | AGAAAAAACTTCTCATTCTT+TGG | + | chr2_3:5793838-5793857 | None:intergenic | 25.0% |
| !!! | AAAGAATGAGAAGTTTTTTC+TGG | - | chr2_3:5793837-5793856 | Msa0274030:CDS | 25.0% |
| ! | ATGTGTGATTTATTTAAGTG+CGG | - | chr2_3:5793938-5793957 | Msa0274030:CDS | 25.0% |
| !! | ATTTATTTAAGTGCGGTTTT+AGG | - | chr2_3:5793945-5793964 | Msa0274030:CDS | 25.0% |
| !! | TTTATTTAAGTGCGGTTTTA+GGG | - | chr2_3:5793946-5793965 | Msa0274030:CDS | 25.0% |
| !! | ATAACCTTTTGCAAAATCAT+TGG | - | chr2_3:5794107-5794126 | Msa0274030:intron | 25.0% |
| ! | AAAGCATATAATATCTCTGA+TGG | - | chr2_3:5794191-5794210 | Msa0274030:intron | 25.0% |
| !! | TTCTACTATCATGATTTTTG+TGG | - | chr2_3:5794240-5794259 | Msa0274030:intron | 25.0% |
| !!! | AAAATTAATGGACTAAGCTA+AGG | + | chr2_3:5794279-5794298 | None:intergenic | 25.0% |
| ! | CCTCCTTCTTAAAAATTATT+TGG | + | chr2_3:5794366-5794385 | None:intergenic | 25.0% |
| !!! | CCAAATAATTTTTAAGAAGG+AGG | - | chr2_3:5794363-5794382 | Msa0274030:intron | 25.0% |
| !! | GACTTTTACTACTAAACTTA+AGG | + | chr2_3:5794492-5794511 | None:intergenic | 25.0% |
| ! | TTCGCACTTAAAAGTTTATA+AGG | - | chr2_3:5794635-5794654 | Msa0274030:intron | 25.0% |
| ! | AATATATTTGGTATCTGGTT+TGG | - | chr2_3:5795036-5795055 | Msa0274030:intron | 25.0% |
| ! | AAAAGAAAACATCCAAAATC+AGG | + | chr2_3:5795110-5795129 | None:intergenic | 25.0% |
| ! | AATTGTACAACATGAAACAT+GGG | + | chr2_3:5795214-5795233 | None:intergenic | 25.0% |
| ! | TAATTGTACAACATGAAACA+TGG | + | chr2_3:5795215-5795234 | None:intergenic | 25.0% |
| ! | TATCAAATATTGTCATGCTT+AGG | + | chr2_3:5795287-5795306 | None:intergenic | 25.0% |
| ! | TATTTGATAGATGTTACCAT+TGG | - | chr2_3:5795298-5795317 | Msa0274030:intron | 25.0% |
| ! | TAGGATTTATCTTCGATATA+AGG | + | chr2_3:5795505-5795524 | None:intergenic | 25.0% |
| ! | ATAAATCCTATCTATGTACA+TGG | - | chr2_3:5795515-5795534 | Msa0274030:intron | 25.0% |
| ! | TTATTTATCATTGCTTCAAG+TGG | - | chr2_3:5795804-5795823 | Msa0274030:CDS | 25.0% |
| !!! | GAAGGTTTTAAATAATAGTC+AGG | + | chr2_3:5795908-5795927 | None:intergenic | 25.0% |
| ! | TTAATGTTCATTCTTCTTCA+AGG | - | chr2_3:5796093-5796112 | Msa0274030:intron | 25.0% |
| AACTATTGTTCATGTGTTTC+AGG | - | chr2_3:5793762-5793781 | Msa0274030:CDS | 30.0% | |
| ! | CTATGCCAATACAATCTTTT+TGG | - | chr2_3:5793795-5793814 | Msa0274030:CDS | 30.0% |
| !! | AAAATCATTGGCTTCTACTA+TGG | - | chr2_3:5794119-5794138 | Msa0274030:intron | 30.0% |
| ! | ATTTTTGTGGTATCTAGCAT+TGG | - | chr2_3:5794253-5794272 | Msa0274030:intron | 30.0% |
| ! | ATATATTAGTTTCCAGGGTT+TGG | + | chr2_3:5794397-5794416 | None:intergenic | 30.0% |
| ! | TTCAAAGTTGATCACGTATA+CGG | + | chr2_3:5794514-5794533 | None:intergenic | 30.0% |
| !!! | TTGATCATAAGTTTTGAAGC+TGG | - | chr2_3:5794565-5794584 | Msa0274030:intron | 30.0% |
| AATGAAAACTACCAGTGTAT+TGG | + | chr2_3:5794759-5794778 | None:intergenic | 30.0% | |
| !! | TTTGATGTTGATTTCAACCA+TGG | - | chr2_3:5794781-5794800 | Msa0274030:intron | 30.0% |
| GATCAATGTTATTCAGTATC+TGG | - | chr2_3:5794993-5795012 | Msa0274030:intron | 30.0% | |
| TGTACGTGTTGCAATATATT+TGG | - | chr2_3:5795024-5795043 | Msa0274030:intron | 30.0% | |
| GTTGCAATATATTTGGTATC+TGG | - | chr2_3:5795031-5795050 | Msa0274030:intron | 30.0% | |
| TGTCAACAAACAATAGGATT+TGG | + | chr2_3:5795081-5795100 | None:intergenic | 30.0% | |
| ACAGATAAGTAGTAATGCAA+GGG | + | chr2_3:5795146-5795165 | None:intergenic | 30.0% | |
| TGTCAGATGTAAAACCATTT+AGG | - | chr2_3:5795163-5795182 | Msa0274030:intron | 30.0% | |
| GTCAGATGTAAAACCATTTA+GGG | - | chr2_3:5795164-5795183 | Msa0274030:intron | 30.0% | |
| TCAGATGTAAAACCATTTAG+GGG | - | chr2_3:5795165-5795184 | Msa0274030:intron | 30.0% | |
| ATATTGTTAAGACCCCTAAA+TGG | + | chr2_3:5795180-5795199 | None:intergenic | 30.0% | |
| ATTGTACAACATGAAACATG+GGG | + | chr2_3:5795213-5795232 | None:intergenic | 30.0% | |
| TAGTAAAGAAAACCAAATCC+TGG | + | chr2_3:5795414-5795433 | None:intergenic | 30.0% | |
| ! | TGGTTTTCTTTACTATTCGA+TGG | - | chr2_3:5795419-5795438 | Msa0274030:intron | 30.0% |
| ! | TTTTCTTTACTATTCGATGG+TGG | - | chr2_3:5795422-5795441 | Msa0274030:intron | 30.0% |
| GATCTCTTAAAAACCGTTAT+CGG | + | chr2_3:5795612-5795631 | None:intergenic | 30.0% | |
| TAGACCAATAGAGTTTCAAA+AGG | - | chr2_3:5795697-5795716 | Msa0274030:intron | 30.0% | |
| CTTGATATTGTAGAGAAAAG+CGG | + | chr2_3:5795764-5795783 | None:intergenic | 30.0% | |
| ! | GCTTTTCTCTACAATATCAA+GGG | - | chr2_3:5795763-5795782 | Msa0274030:intron | 30.0% |
| TACAAAAACAGTTTGAAGGA+AGG | + | chr2_3:5795926-5795945 | None:intergenic | 30.0% | |
| ACTGTACAAAAACAGTTTGA+AGG | + | chr2_3:5795930-5795949 | None:intergenic | 30.0% | |
| GAAGAATGAACATTAACAAG+CGG | + | chr2_3:5796089-5796108 | None:intergenic | 30.0% | |
| TCTTCTTCAAGGAATGTTTA+CGG | - | chr2_3:5796104-5796123 | Msa0274030:CDS | 30.0% | |
| GCTAGGATGTCAAATTACTA+AGG | + | chr2_3:5793896-5793915 | None:intergenic | 35.0% | |
| ! | GTTCTTATCCATCTTTTACC+AGG | - | chr2_3:5794039-5794058 | Msa0274030:intron | 35.0% |
| AGAACATACCTGGTAAAAGA+TGG | + | chr2_3:5794050-5794069 | None:intergenic | 35.0% | |
| AATTGTAGGTAGAACATACC+TGG | + | chr2_3:5794060-5794079 | None:intergenic | 35.0% | |
| ! | GAAGCCAATGATTTTGCAAA+AGG | + | chr2_3:5794114-5794133 | None:intergenic | 35.0% |
| !! | AGATATTTGTTATCCCACGA+AGG | - | chr2_3:5794314-5794333 | Msa0274030:intron | 35.0% |
| !! | AATTTTTAAGAAGGAGGTCC+AGG | - | chr2_3:5794369-5794388 | Msa0274030:intron | 35.0% |
| !! | ATTTTTAAGAAGGAGGTCCA+GGG | - | chr2_3:5794370-5794389 | Msa0274030:intron | 35.0% |
| GTTACACATAAACACACAGA+AGG | + | chr2_3:5794662-5794681 | None:intergenic | 35.0% | |
| !!! | TATTGGTGGTGTTTTTTGTG+GGG | + | chr2_3:5794742-5794761 | None:intergenic | 35.0% |
| !!! | GTATTGGTGGTGTTTTTTGT+GGG | + | chr2_3:5794743-5794762 | None:intergenic | 35.0% |
| !!! | TGTATTGGTGGTGTTTTTTG+TGG | + | chr2_3:5794744-5794763 | None:intergenic | 35.0% |
| AAAAAACACCACCAATACAC+TGG | - | chr2_3:5794745-5794764 | Msa0274030:intron | 35.0% | |
| TTGTCAAACTCTTGAGTTTG+CGG | - | chr2_3:5794822-5794841 | Msa0274030:intron | 35.0% | |
| TCGAGTAAACTCTGATAACA+TGG | - | chr2_3:5794904-5794923 | Msa0274030:intron | 35.0% | |
| !! | ACATTGGTTTGGCCTTAAAA+TGG | - | chr2_3:5794962-5794981 | Msa0274030:intron | 35.0% |
| TTGGTTCAACAACTAGTAGT+AGG | + | chr2_3:5795062-5795081 | None:intergenic | 35.0% | |
| GACAGATAAGTAGTAATGCA+AGG | + | chr2_3:5795147-5795166 | None:intergenic | 35.0% | |
| GATAGATGTTACCATTGGAA+TGG | - | chr2_3:5795303-5795322 | Msa0274030:intron | 35.0% | |
| CTATCACAAATCCATTCCAA+TGG | + | chr2_3:5795317-5795336 | None:intergenic | 35.0% | |
| GGATGCATAAAGTAACGTAA+AGG | + | chr2_3:5795354-5795373 | None:intergenic | 35.0% | |
| CCTGGAGAAAAAATCCATTA+AGG | + | chr2_3:5795396-5795415 | None:intergenic | 35.0% | |
| !!! | CCTTAATGGATTTTTTCTCC+AGG | - | chr2_3:5795393-5795412 | Msa0274030:intron | 35.0% |
| !!! | TGGATTTTTTCTCCAGGATT+TGG | - | chr2_3:5795399-5795418 | Msa0274030:intron | 35.0% |
| AAACAGCCATGTACATAGAT+AGG | + | chr2_3:5795524-5795543 | None:intergenic | 35.0% | |
| CACAAGGTGTAAACTACTAA+GGG | + | chr2_3:5795553-5795572 | None:intergenic | 35.0% | |
| GAGAAGAGATGATTACCTAT+AGG | + | chr2_3:5795650-5795669 | None:intergenic | 35.0% | |
| GGTAATCATCTCTTCTCATT+CGG | - | chr2_3:5795653-5795672 | Msa0274030:intron | 35.0% | |
| ! | TGGTCTAAAGCAAACATAAC+TGG | + | chr2_3:5795684-5795703 | None:intergenic | 35.0% |
| ACCAATAGAGTTTCAAAAGG+TGG | - | chr2_3:5795700-5795719 | Msa0274030:intron | 35.0% | |
| !!! | ACCACCTTTTGAAACTCTAT+TGG | + | chr2_3:5795704-5795723 | None:intergenic | 35.0% |
| ! | CGCTTTTCTCTACAATATCA+AGG | - | chr2_3:5795762-5795781 | Msa0274030:intron | 35.0% |
| GCTTGATCTTATAACCTCAA+GGG | + | chr2_3:5795857-5795876 | None:intergenic | 35.0% | |
| AGCTTGATCTTATAACCTCA+AGG | + | chr2_3:5795858-5795877 | None:intergenic | 35.0% | |
| !!! | GTACAGTATGTGTTTTAGAG+TGG | - | chr2_3:5795943-5795962 | Msa0274030:CDS | 35.0% |
| CTCAGAAAGCAAATAACATG+TGG | - | chr2_3:5796031-5796050 | Msa0274030:intron | 35.0% | |
| AGAAAGCAAATAACATGTGG+TGG | - | chr2_3:5796034-5796053 | Msa0274030:intron | 35.0% | |
| GAAAACCACGGACAATTTAT+AGG | + | chr2_3:5796166-5796185 | None:intergenic | 35.0% | |
| CTTCAGTATTTGGAAAACCA+CGG | + | chr2_3:5796178-5796197 | None:intergenic | 35.0% | |
| ATGCAGAAACCTTCAGTATT+TGG | + | chr2_3:5796188-5796207 | None:intergenic | 35.0% | |
| ! | TTTTGTTAGAGGTTATGCCT+AGG | - | chr2_3:5796229-5796248 | Msa0274030:intron | 35.0% |
| ! | TTATGATGATGACAGCGATG+AGG | + | chr2_3:5793677-5793696 | None:intergenic | 40.0% |
| TCATCGCTGTCATCATCATA+AGG | - | chr2_3:5793676-5793695 | Msa0274030:CDS | 40.0% | |
| TTGACATCCTAGCACAAGAA+TGG | - | chr2_3:5793903-5793922 | Msa0274030:CDS | 40.0% | |
| CAATGAACCATTCTTGTGCT+AGG | + | chr2_3:5793913-5793932 | None:intergenic | 40.0% | |
| CTAGCACAAGAATGGTTCAT+TGG | - | chr2_3:5793911-5793930 | Msa0274030:CDS | 40.0% | |
| ACAATCAATGCCCATGCTAA+CGG | + | chr2_3:5793973-5793992 | None:intergenic | 40.0% | |
| !! | TAGCATGGGCATTGATTGTT+TGG | - | chr2_3:5793974-5793993 | Msa0274030:CDS | 40.0% |
| CAAGAGATTCATGCTAGACA+AGG | - | chr2_3:5794463-5794482 | Msa0274030:CDS | 40.0% | |
| GAAAACTACCAGTGTATTGG+TGG | + | chr2_3:5794756-5794775 | None:intergenic | 40.0% | |
| TTCAACCATGGTAGTTGTCA+TGG | - | chr2_3:5794793-5794812 | Msa0274030:intron | 40.0% | |
| GAAAACATCCAAAATCAGGC+AGG | + | chr2_3:5795106-5795125 | None:intergenic | 40.0% | |
| ATAAGGCCATGTAACTCTTG+CGG | + | chr2_3:5795488-5795507 | None:intergenic | 40.0% | |
| ! | TCTATGTACATGGCTGTTTC+TGG | - | chr2_3:5795525-5795544 | Msa0274030:intron | 40.0% |
| CCACAAGGTGTAAACTACTA+AGG | + | chr2_3:5795554-5795573 | None:intergenic | 40.0% | |
| CCTTAGTAGTTTACACCTTG+TGG | - | chr2_3:5795551-5795570 | Msa0274030:intron | 40.0% | |
| TCAATGTCTTACGCCGATAA+CGG | - | chr2_3:5795596-5795615 | Msa0274030:intron | 40.0% | |
| CTATAGGAAGTCATGACTTC+AGG | + | chr2_3:5795634-5795653 | None:intergenic | 40.0% | |
| CTGAAGTCATGACTTCCTAT+AGG | - | chr2_3:5795632-5795651 | Msa0274030:intron | 40.0% | |
| TGTGGTTCCAATCACGATTA+TGG | + | chr2_3:5795727-5795746 | None:intergenic | 40.0% | |
| TTACAACTGAGCTGAACTCA+TGG | - | chr2_3:5795879-5795898 | Msa0274030:intron | 40.0% | |
| TCTTCAAGGAATGTTTACGG+TGG | - | chr2_3:5796107-5796126 | Msa0274030:CDS | 40.0% | |
| CTTGTCCTATAAATTGTCCG+TGG | - | chr2_3:5796158-5796177 | Msa0274030:CDS | 40.0% | |
| ! | CGTGGTTTTCCAAATACTGA+AGG | - | chr2_3:5796176-5796195 | Msa0274030:CDS | 40.0% |
| ! | TGGAGCAAGCTTTTTGTTAG+AGG | - | chr2_3:5796218-5796237 | Msa0274030:intron | 40.0% |
| !! | GGTCTGCTTTTCATTTGCTG+AGG | - | chr2_3:5793858-5793877 | Msa0274030:CDS | 45.0% |
| !!! | GTTTTAGGGTCCGTTAGCAT+GGG | - | chr2_3:5793960-5793979 | Msa0274030:CDS | 45.0% |
| GATTGTTTGGCGTTGCAGTT+TGG | - | chr2_3:5793987-5794006 | Msa0274030:CDS | 45.0% | |
| GACAACCATGACAACTACCA+TGG | + | chr2_3:5794801-5794820 | None:intergenic | 45.0% | |
| TCAAACTCTTGAGTTTGCGG+TGG | - | chr2_3:5794825-5794844 | Msa0274030:intron | 45.0% | |
| CAGGCGTGTCAACAAACAAT+AGG | + | chr2_3:5795087-5795106 | None:intergenic | 45.0% | |
| TTAGAAGCTATGCGACCAGA+GGG | - | chr2_3:5795457-5795476 | Msa0274030:intron | 45.0% | |
| AGTAGTTTACACCTTGTGGC+AGG | - | chr2_3:5795555-5795574 | Msa0274030:intron | 45.0% | |
| GTAGTATAGAACCTGCCACA+AGG | + | chr2_3:5795569-5795588 | None:intergenic | 45.0% | |
| GGCGTAAGACATTGACAACA+AGG | + | chr2_3:5795591-5795610 | None:intergenic | 45.0% | |
| AGGTGGTCCATAATCGTGAT+TGG | - | chr2_3:5795717-5795736 | Msa0274030:intron | 45.0% | |
| AATGTTTACGGTGGCAACGA+TGG | - | chr2_3:5796116-5796135 | Msa0274030:CDS | 45.0% | |
| TGAAGGTTTCTGCATCAGTG+TGG | - | chr2_3:5796193-5796212 | Msa0274030:intron | 45.0% | |
| GTTTCTGCATCAGTGTGGAA+TGG | - | chr2_3:5796198-5796217 | Msa0274030:intron | 45.0% | |
| TCCTTGAGAATAACCTGCCT+AGG | + | chr2_3:5796249-5796268 | None:intergenic | 45.0% | |
| !!! | GGTTTTAGGGTCCGTTAGCA+TGG | - | chr2_3:5793959-5793978 | Msa0274030:CDS | 50.0% |
| GTTATCCCACGAAGGTAGCT+TGG | - | chr2_3:5794322-5794341 | Msa0274030:intron | 50.0% | |
| ACCAACCAAGCTACCTTCGT+GGG | + | chr2_3:5794330-5794349 | None:intergenic | 50.0% | |
| ! | TTGACACGCCTGCCTGATTT+TGG | - | chr2_3:5795095-5795114 | Msa0274030:intron | 50.0% |
| !! | CGCATAGCTTCTAAGGTCTC+AGG | + | chr2_3:5795451-5795470 | None:intergenic | 50.0% |
| CTCTGGTCGCATAGCTTCTA+AGG | + | chr2_3:5795458-5795477 | None:intergenic | 50.0% | |
| CTTAGAAGCTATGCGACCAG+AGG | - | chr2_3:5795456-5795475 | Msa0274030:intron | 50.0% | |
| GGAACCACACTAGCTGTAGT+TGG | - | chr2_3:5795738-5795757 | Msa0274030:intron | 50.0% | |
| TTTGCAACTGTCGTCCCTTG+AGG | - | chr2_3:5795840-5795859 | Msa0274030:intron | 50.0% | |
| ! | AACATGTGGTGGCGCTTAAG+TGG | - | chr2_3:5796045-5796064 | Msa0274030:intron | 50.0% |
| GTTAGAGGTTATGCCTAGGC+AGG | - | chr2_3:5796233-5796252 | Msa0274030:intron | 50.0% | |
| GCCTAGGCAGGTTATTCTCA+AGG | - | chr2_3:5796245-5796264 | Msa0274030:intron | 50.0% | |
| TCCCACGAAGGTAGCTTGGT+TGG | - | chr2_3:5794326-5794345 | Msa0274030:intron | 55.0% | |
| CACCAACCAAGCTACCTTCG+TGG | + | chr2_3:5794331-5794350 | None:intergenic | 55.0% | |
| AGTTTCCAGGGTTTGGACCC+TGG | + | chr2_3:5794390-5794409 | None:intergenic | 55.0% | |
| GAGCTGCCGCAAGAGTTACA+TGG | - | chr2_3:5795479-5795498 | Msa0274030:intron | 55.0% | |
| !! | TGGCGCTTAAGTGGCTTGCT+CGG | - | chr2_3:5796054-5796073 | Msa0274030:intron | 55.0% |
| GCGGCCAACTACAGCTAGTG+TGG | + | chr2_3:5795745-5795764 | None:intergenic | 60.0% | |
| !! | GGCGCTTAAGTGGCTTGCTC+GGG | - | chr2_3:5796055-5796074 | Msa0274030:intron | 60.0% |
| !! | GCGCTTAAGTGGCTTGCTCG+GGG | - | chr2_3:5796056-5796075 | Msa0274030:intron | 60.0% |
| GAGGTCCAGGGTCCAAACCC+TGG | - | chr2_3:5794382-5794401 | Msa0274030:intron | 65.0% | |
| ACTCTTGCGGCAGCTCCCTC+TGG | + | chr2_3:5795475-5795494 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 5793663 | 5796320 | 5793663 | ID=Msa0274030;Name=Msa0274030 |
| chr2_3 | mRNA | 5793663 | 5796320 | 5793663 | ID=Msa0274030-mRNA-1;Parent=Msa0274030;Name=Msa0274030-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|0.66|1|1|6|0|254 |
| chr2_3 | exon | 5796300 | 5796320 | 5796300 | ID=Msa0274030-mRNA-1:exon:2722;Parent=Msa0274030-mRNA-1 |
| chr2_3 | exon | 5796104 | 5796199 | 5796104 | ID=Msa0274030-mRNA-1:exon:2721;Parent=Msa0274030-mRNA-1 |
| chr2_3 | exon | 5795923 | 5796016 | 5795923 | ID=Msa0274030-mRNA-1:exon:2720;Parent=Msa0274030-mRNA-1 |
| chr2_3 | exon | 5795801 | 5795832 | 5795801 | ID=Msa0274030-mRNA-1:exon:2719;Parent=Msa0274030-mRNA-1 |
| chr2_3 | exon | 5794407 | 5794568 | 5794407 | ID=Msa0274030-mRNA-1:exon:2718;Parent=Msa0274030-mRNA-1 |
| chr2_3 | exon | 5793663 | 5794022 | 5793663 | ID=Msa0274030-mRNA-1:exon:2717;Parent=Msa0274030-mRNA-1 |
| chr2_3 | CDS | 5796300 | 5796320 | 5796300 | ID=Msa0274030-mRNA-1:cds;Parent=Msa0274030-mRNA-1 |
| chr2_3 | CDS | 5796104 | 5796199 | 5796104 | ID=Msa0274030-mRNA-1:cds;Parent=Msa0274030-mRNA-1 |
| chr2_3 | CDS | 5795923 | 5796016 | 5795923 | ID=Msa0274030-mRNA-1:cds;Parent=Msa0274030-mRNA-1 |
| chr2_3 | CDS | 5795801 | 5795832 | 5795801 | ID=Msa0274030-mRNA-1:cds;Parent=Msa0274030-mRNA-1 |
| chr2_3 | CDS | 5794407 | 5794568 | 5794407 | ID=Msa0274030-mRNA-1:cds;Parent=Msa0274030-mRNA-1 |
| chr2_3 | CDS | 5793663 | 5794022 | 5793663 | ID=Msa0274030-mRNA-1:cds;Parent=Msa0274030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
