AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0010700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0010700 MtrunA17_Chr1g0211181 95.146 309 14 1 32 339 1 309 0.0 606
Msa0010700 MtrunA17_Chr1g0211181 67.037 270 55 2 446 683 136 403 1.71e-115 352
Msa0010700 MtrunA17_Chr1g0211181 94.595 37 2 0 338 374 365 401 2.79e-14 75.5
Msa0010700 MtrunA17_Chr1g0211141 80.528 303 58 1 38 339 1 303 1.71e-170 493
Msa0010700 MtrunA17_Chr1g0211141 77.860 271 26 2 446 684 130 398 1.66e-134 401
Msa0010700 MtrunA17_Chr1g0197161 76.299 308 68 1 37 339 4 311 1.35e-164 478
Msa0010700 MtrunA17_Chr1g0197161 56.675 397 85 7 374 685 13 407 1.46e-131 394
Msa0010700 MtrunA17_Chr1g0211171 77.564 312 64 3 32 339 1 310 1.87e-164 478
Msa0010700 MtrunA17_Chr1g0211171 65.586 401 50 7 374 687 13 412 9.30e-149 438
Msa0010700 MtrunA17_Chr1g0211151 74.367 316 77 3 32 345 1 314 9.64e-153 448
Msa0010700 MtrunA17_Chr1g0211151 66.912 272 57 2 446 684 135 406 7.40e-109 335
Msa0010700 MtrunA17_Chr5g0399671 43.354 316 175 4 33 346 37 350 5.26e-76 250
Msa0010700 MtrunA17_Chr5g0399671 34.979 243 120 3 453 664 178 413 8.54e-38 145
Msa0010700 MtrunA17_Chr5g0399661 41.083 314 181 4 35 346 35 346 1.79e-73 244
Msa0010700 MtrunA17_Chr5g0399661 32.707 266 138 3 452 684 173 430 9.78e-37 143
Msa0010700 MtrunA17_Chr4g0017991 40.940 149 66 2 39 185 6 134 1.02e-23 99.0
Msa0010700 MtrunA17_Chr4g0017981 34.375 160 100 3 525 683 2 157 2.20e-22 94.7
Msa0010700 MtrunA17_Chr4g0018001 33.742 163 97 3 525 683 82 237 2.36e-22 97.1
Msa0010700 MtrunA17_Chr4g0018001 32.090 134 90 1 214 346 18 151 1.68e-20 91.7
Msa0010700 MtrunA17_Chr4g0017951 56.944 72 31 0 38 109 5 76 5.29e-20 84.7
Msa0010700 MtrunA17_Chr8g0375081 26.364 330 199 10 42 346 83 393 2.96e-11 66.6
Msa0010700 MtrunA17_Chr5g0402211 26.549 339 221 10 33 354 69 396 3.32e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0010700 AT5G05320.1 52.614 306 142 1 40 345 7 309 1.42e-106 330
Msa0010700 AT5G05320.1 48.529 272 107 3 447 685 134 405 2.14e-81 264
Msa0010700 AT4G38540.1 53.443 305 140 1 41 345 8 310 1.94e-100 314
Msa0010700 AT4G38540.1 50.735 272 99 3 447 683 134 405 4.03e-79 258
Msa0010700 AT2G35660.1 41.158 311 177 5 39 346 44 351 8.29e-68 229
Msa0010700 AT2G35660.1 32.453 265 138 4 452 683 178 434 3.44e-33 133
Msa0010700 AT2G29720.1 38.333 300 181 4 52 349 55 352 7.73e-62 213
Msa0010700 AT2G29720.1 33.061 245 125 3 452 665 176 412 7.30e-32 129
Msa0010700 AT4G15760.1 32.326 331 197 5 50 374 39 348 8.89e-48 174
Msa0010700 AT4G15760.1 29.658 263 154 2 452 683 160 422 6.95e-32 129
Msa0010700 AT4G15760.2 32.945 343 191 8 50 374 39 360 1.23e-46 171
Msa0010700 AT4G15760.2 29.658 263 154 2 452 683 172 434 9.34e-32 129
Msa0010700 AT2G35660.2 38.362 232 138 4 118 346 8 237 1.03e-42 157
Msa0010700 AT2G35660.2 32.453 265 138 4 452 683 64 320 5.01e-34 133
Msa0010700 AT2G35660.3 38.362 232 138 4 118 346 8 237 1.03e-42 157
Msa0010700 AT2G35660.3 32.453 265 138 4 452 683 64 320 5.01e-34 133
Msa0010700 AT4G15765.1 31.104 299 166 5 39 335 3 263 4.15e-36 137
Msa0010700 AT4G15765.2 30.120 166 116 0 170 335 25 190 1.47e-23 99.4
Msa0010700 AT4G15765.2 25.789 190 108 3 426 583 2 190 1.59e-13 70.5
Msa0010700 AT4G15765.5 30.120 166 116 0 170 335 25 190 1.47e-23 99.4
Msa0010700 AT4G15765.5 25.789 190 108 3 426 583 2 190 1.59e-13 70.5
Msa0010700 AT4G15765.3 30.120 166 116 0 170 335 25 190 1.47e-23 99.4
Msa0010700 AT4G15765.3 25.789 190 108 3 426 583 2 190 1.59e-13 70.5
Msa0010700 AT4G15765.4 30.120 166 116 0 170 335 25 190 1.47e-23 99.4
Msa0010700 AT4G15765.4 25.789 190 108 3 426 583 2 190 1.59e-13 70.5

Find 176 sgRNAs with CRISPR-Local

Find 453 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCAGGGATAAAATTT+TGG 0.116678 1_1:+16211085 Msa0010700:CDS
CACAAACATATACATCTTTA+TGG 0.152913 1_1:+16205110 Msa0010700:CDS
CTGGATTTGCTTTAGGAATA+TGG 0.163806 1_1:+16205036 Msa0010700:CDS
ATACAGGTAGATATGGAATT+AGG 0.167774 1_1:+16205873 Msa0010700:CDS
CAAAATTGGTTAACTTCTTC+AGG 0.188159 1_1:+16211072 Msa0010700:CDS
TCCATATCTACCTGTATAAA+TGG 0.215538 1_1:-16205867 None:intergenic
AATTAGCAACTTTGTCTTTC+AGG 0.225902 1_1:+16205307 Msa0010700:CDS
TGTGACTACTTCTTTGGTTA+TGG 0.241431 1_1:+16209723 Msa0010700:CDS
ACATATTGCTTCAGTTTAAC+AGG 0.258163 1_1:-16206202 None:intergenic
GTGACTACTTCTTTGATTAC+AGG 0.261068 1_1:+16205279 Msa0010700:CDS
TCAGGAAAGTGGTTCAAAAT+TGG 0.273076 1_1:+16211058 Msa0010700:CDS
TCAGATAGTTTGAGAGTAAC+TGG 0.275521 1_1:+16205017 Msa0010700:CDS
TACAGGTAGATATGGAATTA+GGG 0.275824 1_1:+16205874 Msa0010700:CDS
CAGGAATGTGACTACTTCTT+TGG 0.280000 1_1:+16209717 Msa0010700:intron
TCAGCAGGCTGATTCAAAAT+TGG 0.284136 1_1:+16206602 Msa0010700:CDS
CAAGGATGTCTATATCTTAA+TGG 0.290619 1_1:-16206304 None:intergenic
GTCATGAGAAAGGTGTTTAC+TGG 0.295235 1_1:+16205984 Msa0010700:CDS
AAAATACTACATCTTGTTGA+TGG 0.306705 1_1:+16205614 Msa0010700:CDS
ATGAAATGTTTAACATCATT+TGG 0.309078 1_1:-16210705 None:intergenic
GTTGTTGCTATTGAGGAATC+TGG 0.311479 1_1:+16205584 Msa0010700:CDS
AAAGGCAATGTTTGTGTTGC+TGG 0.327124 1_1:+16210810 Msa0010700:CDS
ACATCCTTGGGAGCTAATAA+TGG 0.330779 1_1:+16210776 Msa0010700:CDS
CAGGTTGGGTGTAAGAAGTT+TGG 0.334231 1_1:+16204983 Msa0010700:intron
GTGACTACTTCTTTGGTTAT+GGG 0.339346 1_1:+16209724 Msa0010700:CDS
AAAATATTACATCTTGTTGA+TGG 0.342630 1_1:+16210083 Msa0010700:CDS
AGAGTAACTGGATTTGCTTT+AGG 0.343106 1_1:+16205029 Msa0010700:CDS
GTAATTGAAAAGGTATTGAT+AGG 0.347467 1_1:+16205794 Msa0010700:intron
AAAGGAAATGTTTGTGTTGC+TGG 0.349120 1_1:+16206352 Msa0010700:CDS
ATTGTGGGAGCTGGAATTGC+TGG 0.349361 1_1:+16204831 Msa0010700:CDS
GCCATTTATACAGGTAGATA+TGG 0.356014 1_1:+16205866 Msa0010700:CDS
GTTGTTGCTATTCAGGAATC+TGG 0.365962 1_1:+16210053 Msa0010700:intron
TGGCCAAGATCAGGCATCAT+AGG 0.366278 1_1:-16210846 None:intergenic
ATTGTAGGAGCTGGAATTGC+TGG 0.368049 1_1:+16208406 Msa0010700:intron
AAAAGAAGAGCTGTTATAAC+TGG 0.370491 1_1:+16204697 None:intergenic
ACATCCTTGGGAGCTCATAA+TGG 0.372312 1_1:+16206318 Msa0010700:CDS
GTCAAAAGTTGTTGCTATTG+AGG 0.373545 1_1:+16205577 Msa0010700:CDS
TGGATTTGCTTTAGGAATAT+GGG 0.376418 1_1:+16205037 Msa0010700:CDS
CACCCTATGATGCCTGATCT+TGG 0.380927 1_1:+16210843 Msa0010700:CDS
TTCAAGGAGGCCATTTATAC+AGG 0.388572 1_1:+16205857 Msa0010700:CDS
ATCAAAACCAAGGTGTTGAT+TGG 0.389792 1_1:+16210113 Msa0010700:CDS
TGCAAAGTGGTTAGGCTTCA+AGG 0.404806 1_1:+16205841 Msa0010700:CDS
CACCCCATGACACCTGATCT+TGG 0.406255 1_1:+16206385 Msa0010700:CDS
CACCAACATCTACAACTTCA+TGG 0.407357 1_1:+16209470 Msa0010700:CDS
GGGTGTAAGAAGTTTGGTAT+TGG 0.407891 1_1:+16204989 Msa0010700:CDS
GGTGTCATTTGGAAGTTCAT+TGG 0.408951 1_1:-16205543 None:intergenic
TGTTAGAAGGAAGTTATTGT+TGG 0.411104 1_1:+16205511 Msa0010700:CDS
AATATGCAAAGGAGAGAAGA+TGG 0.415258 1_1:+16210991 Msa0010700:CDS
CCTATGCTTATGCAGTTCTA+TGG 0.418184 1_1:+16205932 Msa0010700:CDS
TGCTGGCCTCACAACATCCT+TGG 0.420337 1_1:+16208423 Msa0010700:CDS
ACAAACATATACATCTTTAT+GGG 0.420565 1_1:+16205111 Msa0010700:CDS
GTGGATTTGCTTTAACGGTA+TGG 0.422983 1_1:+16209396 Msa0010700:CDS
GATGTATATGTTTGTGGCGG+AGG 0.427623 1_1:-16205103 None:intergenic
GCTGGCCTTACTACTGCCTT+AGG 0.433010 1_1:+16204849 Msa0010700:CDS
CATCCTTGGGAGCTAATAAT+GGG 0.433653 1_1:+16210777 Msa0010700:CDS
TGTTGCAGATAAGGAGCTAA+TGG 0.435214 1_1:+16206174 Msa0010700:intron
ATGATAGATCTAACATTACT+TGG 0.440226 1_1:-16206247 None:intergenic
TTCAACGAAGCCTCATACAC+AGG 0.443232 1_1:+16210176 Msa0010700:CDS
TCTGTGGTTGCAAAGTGGTT+AGG 0.443344 1_1:+16205833 Msa0010700:CDS
ATTAGCAACTTTGTCTTTCA+GGG 0.445209 1_1:+16205308 Msa0010700:CDS
GGTCAACTATTCAAGAAGTC+TGG 0.446062 1_1:+16206666 Msa0010700:CDS
CATCCTTGGGAGCTCATAAT+GGG 0.446436 1_1:+16206319 Msa0010700:CDS
AGTCAGTGGATTTGCTTTAA+CGG 0.446543 1_1:+16209391 Msa0010700:intron
AAGAAGAAGAAGAATACAAA+AGG 0.451857 1_1:+16210949 Msa0010700:CDS
TGCATATCTCCCTGTGTATG+AGG 0.452906 1_1:-16210186 None:intergenic
TATTGCAGGTGTTATTCAGC+AGG 0.452920 1_1:+16206587 Msa0010700:intron
AAAATTGGTTAACTTCTTCA+GGG 0.455885 1_1:+16211073 Msa0010700:CDS
CCAATGTTCATGCAGTACTT+TGG 0.458036 1_1:+16210251 Msa0010700:CDS
TAGGAATATGGGAAAATGCT+TGG 0.459941 1_1:+16205048 Msa0010700:CDS
CATTGAGACATAGACATCCT+TGG 0.463494 1_1:+16210763 Msa0010700:CDS
AACTTCCAAATGACACCATT+AGG 0.465917 1_1:+16205549 Msa0010700:CDS
CATAAAGATGTATATGTTTG+TGG 0.466768 1_1:-16205109 None:intergenic
GCTGGCCTCACAACATCCTT+GGG 0.467311 1_1:+16208424 Msa0010700:CDS
CACCCTCCTTGGCCAAGATC+AGG 0.471352 1_1:-16210855 None:intergenic
GTGAACTACGGAGTGTTAGA+AGG 0.471668 1_1:+16205498 Msa0010700:intron
GTTGTAGATGTTGGTGGCGG+AGG 0.473299 1_1:-16209463 None:intergenic
CATTAAGATATAGACATCCT+TGG 0.475442 1_1:+16206305 Msa0010700:CDS
ATTGAGACATAGACATCCTT+GGG 0.475914 1_1:+16210764 Msa0010700:CDS
TGGATTTGCTTTAACGGTAT+GGG 0.476250 1_1:+16209397 Msa0010700:CDS
TAACGGTATGGGAAAATGCT+TGG 0.477745 1_1:+16209408 Msa0010700:CDS
GGGTGTTGTGCATTAGAAGA+TGG 0.480761 1_1:+16210873 Msa0010700:CDS
CTAATGCACAACACCCTCCT+TGG 0.481132 1_1:-16210866 None:intergenic
GGTGTTGTGCATTAGAAGAT+GGG 0.481605 1_1:+16210874 Msa0010700:CDS
TGAAGAAGATATTGTGATTG+TGG 0.490132 1_1:+16204815 Msa0010700:CDS
ATTAAGATATAGACATCCTT+GGG 0.496859 1_1:+16206306 Msa0010700:CDS
GTTGGTTCTATTCAGGAAAG+TGG 0.496865 1_1:+16211047 Msa0010700:CDS
GCCTTGGATGCTGTTGGTGT+TGG 0.497974 1_1:+16205074 Msa0010700:CDS
ATGTACCTAATGGTGTCATT+TGG 0.503089 1_1:-16205554 None:intergenic
CAAGGATGTCTATGTCTCAA+TGG 0.503296 1_1:-16210762 None:intergenic
TGACCAAGATCAGGTGTCAT+GGG 0.504386 1_1:-16206388 None:intergenic
TCAAAACCAAGGTGTTGATT+GGG 0.505761 1_1:+16210114 Msa0010700:CDS
AGAAGAATACAAAAGGATTG+AGG 0.508059 1_1:+16210956 Msa0010700:CDS
TTTCCCATTATTAGCTCCCA+AGG 0.512250 1_1:-16210780 None:intergenic
CAACATCCTTGGGACTTCAC+AGG 0.512542 1_1:+16208434 Msa0010700:CDS
CTTATGCAGTTCTATGGCAA+AGG 0.512905 1_1:+16205938 Msa0010700:CDS
ATTTGGAAGTTCATTGGCAA+GGG 0.513244 1_1:-16205537 None:intergenic
TATATCTTAATGGAGCTGAA+TGG 0.515218 1_1:-16206294 None:intergenic
TGGAAAGCCTTGGATGCTGT+TGG 0.518048 1_1:+16205068 Msa0010700:CDS
GATATTGTGATTGTGGGAGC+TGG 0.518765 1_1:+16204822 Msa0010700:CDS
CATTTGGAAGTTCATTGGCA+AGG 0.521765 1_1:-16205538 None:intergenic
CCAAAGTACTGCATGAACAT+TGG 0.523201 1_1:-16210251 None:intergenic
GGAAAATGCTTGGAAAGCCT+TGG 0.529652 1_1:+16205058 Msa0010700:CDS
GAATACAAAAGGATTGAGGA+AGG 0.529888 1_1:+16210960 Msa0010700:CDS
ATAATGGGAAATATTAGTAA+AGG 0.530399 1_1:+16210792 Msa0010700:CDS
GCGTTGGATGTCGTTGGTGT+TGG 0.533588 1_1:+16209434 Msa0010700:CDS
AGGAATTGACCTTGGGTGGT+AGG 0.536985 1_1:-16206022 None:intergenic
TGACTACTTCTTTGGTTATG+GGG 0.537353 1_1:+16209725 Msa0010700:CDS
TTGACCAAGATCAGGTGTCA+TGG 0.539777 1_1:-16206389 None:intergenic
TTCATGCAGTACTTTGGCAA+AGG 0.540273 1_1:+16210257 Msa0010700:CDS
GAAGAAGATATTGTGATTGT+GGG 0.542234 1_1:+16204816 Msa0010700:CDS
GAGTAACCTTGGTCGATGGC+CGG 0.543162 1_1:-16204735 None:intergenic
TGGAAGGCGTTGGATGTCGT+TGG 0.546019 1_1:+16209428 Msa0010700:CDS
GGCCAAGATCAGGCATCATA+GGG 0.547689 1_1:-16210845 None:intergenic
GGAAAATGCTTGGAAGGCGT+TGG 0.549027 1_1:+16209418 Msa0010700:CDS
GTGGTACCTGTGAAGTCCTA+AGG 0.549275 1_1:-16204865 None:intergenic
GTTGTTCCTTGTCATGAGAA+AGG 0.552354 1_1:+16205974 Msa0010700:CDS
ATTTAAAATATATGATATGT+CGG 0.554331 1_1:-16204763 None:intergenic
TTGTGCATTAGAAGATGGGG+TGG 0.557089 1_1:+16210878 Msa0010700:CDS
TCCAACACCAACAGCATCCA+AGG 0.559236 1_1:-16205075 None:intergenic
ACCAACATCTACAACTTCAT+GGG 0.560855 1_1:+16209471 Msa0010700:CDS
AATAGTTGACCAGCTAGTAA+TGG 0.561620 1_1:-16206654 None:intergenic
TTTCCCATTATGAGCTCCCA+AGG 0.564495 1_1:-16206322 None:intergenic
AAAATATATGATATGTCGGT+CGG 0.567189 1_1:-16204759 None:intergenic
GAAGTCCTAAGGCAGTAGTA+AGG 0.567536 1_1:-16204854 None:intergenic
ATGACACCTGATCTTGGTCA+AGG 0.568341 1_1:+16206391 Msa0010700:CDS
ACAGGTAGATATGGAATTAG+GGG 0.569603 1_1:+16205875 Msa0010700:CDS
ACTTTGTCTTTCAGGGACAA+AGG 0.573372 1_1:+16205315 Msa0010700:CDS
TGACACCTGATCTTGGTCAA+GGG 0.574223 1_1:+16206392 Msa0010700:CDS
CTACTGCCTTAGGACTTCAC+AGG 0.574990 1_1:+16204859 Msa0010700:CDS
TCTGTGGTGGCAAAGTGGCT+AGG 0.577400 1_1:+16210152 Msa0010700:CDS
ATGAGTTATGTAGTGAACTA+CGG 0.578085 1_1:+16205486 Msa0010700:intron
ATCACACCCAATCAACACCT+TGG 0.578417 1_1:-16210120 None:intergenic
CCATAGAACTGCATAAGCAT+AGG 0.583126 1_1:-16205932 None:intergenic
AAGGTATTGATAGGATGTGA+TGG 0.586088 1_1:+16205803 Msa0010700:intron
TACTCTCCGGCCATCGACCA+AGG 0.589723 1_1:+16204729 Msa0010700:CDS
TTTAGCGAGGTGTTTAGCTG+AGG 0.590331 1_1:+16210902 Msa0010700:CDS
CGGAGAGTAACCTTGGTCGA+TGG 0.590965 1_1:-16204739 None:intergenic
AAGGTGTTGATTGGGTGTGA+TGG 0.594090 1_1:+16210122 Msa0010700:CDS
CATGAAGTTGTAGATGTTGG+TGG 0.595074 1_1:-16209469 None:intergenic
ATGATGCCTGATCTTGGCCA+AGG 0.600478 1_1:+16210849 Msa0010700:CDS
TGCCTGATCTTGGCCAAGGA+GGG 0.602300 1_1:+16210853 Msa0010700:CDS
GACACCTGATCTTGGTCAAG+GGG 0.603675 1_1:+16206393 Msa0010700:CDS
ATAATGGGAAATATTAGCAA+AGG 0.604077 1_1:+16206334 Msa0010700:CDS
CATATTGCTTCAGTTTAACA+GGG 0.606307 1_1:-16206201 None:intergenic
TAAACACCCTTGTCATCACA+TGG 0.608128 1_1:-16210299 None:intergenic
ACCCATGAAGTTGTAGATGT+TGG 0.609291 1_1:-16209472 None:intergenic
GGTATGGGAAAATGCTTGGA+AGG 0.611682 1_1:+16209412 Msa0010700:CDS
CACAGGGAGATATGCAACGA+GGG 0.613113 1_1:+16210193 Msa0010700:CDS
TGTCGGTCGGAGAGTAACCT+TGG 0.613529 1_1:-16204746 None:intergenic
ACTTGGAGTCCTACCACCCA+AGG 0.615526 1_1:+16206013 Msa0010700:CDS
GTGTTGTGCATTAGAAGATG+GGG 0.626627 1_1:+16210875 Msa0010700:CDS
AGCTGTTATAACTGGACACA+AGG 0.629837 1_1:+16204705 Msa0010700:CDS
AGAGTACCTGTGAAGTCCCA+AGG 0.634653 1_1:-16208440 None:intergenic
CTGGACACAAGGTTACTCTC+CGG 0.636373 1_1:+16204716 Msa0010700:CDS
GACCAAGATCAGGTGTCATG+GGG 0.638652 1_1:-16206387 None:intergenic
TAAACTCTGTGGTGGCAAAG+TGG 0.638925 1_1:+16210147 Msa0010700:CDS
AGCTATTCCATGTGATGACA+AGG 0.639989 1_1:+16210292 Msa0010700:CDS
TAAACACCTTTCTCATGACA+AGG 0.641474 1_1:-16205980 None:intergenic
CATTGGTTCAAGCTTGTGAG+TGG 0.645311 1_1:-16210234 None:intergenic
TCAACGAAGCCTCATACACA+GGG 0.655710 1_1:+16210177 Msa0010700:CDS
AGGTTTCAAGAAATATGCAA+AGG 0.658615 1_1:+16210980 Msa0010700:CDS
TCAACTCTGTGGTTGCAAAG+TGG 0.661332 1_1:+16205828 Msa0010700:CDS
GAAGTTGTAGATGTTGGTGG+CGG 0.672083 1_1:-16209466 None:intergenic
ATGCCTGATCTTGGCCAAGG+AGG 0.673847 1_1:+16210852 Msa0010700:CDS
AAAGATGTATATGTTTGTGG+CGG 0.679762 1_1:-16205106 None:intergenic
ACGTCTTTCATAGACAACAA+AGG 0.684092 1_1:+16209763 Msa0010700:CDS
TGATGGAGTAAACTCTGTGG+TGG 0.689773 1_1:+16210139 Msa0010700:CDS
TGGAACAACCATCAAAACCA+AGG 0.693752 1_1:+16205634 Msa0010700:CDS
TGGAACAACCATCAAAACCA+AGG 0.703968 1_1:+16210103 Msa0010700:CDS
ACAGGGAGATATGCAACGAG+GGG 0.719732 1_1:+16210194 Msa0010700:CDS
ACACCTGATCTTGGTCAAGG+GGG 0.720319 1_1:+16206394 Msa0010700:CDS
GTGTGATGGAGTAAACTCTG+TGG 0.740999 1_1:+16210136 Msa0010700:CDS
GCTATTCCATGTGATGACAA+GGG 0.761661 1_1:+16210293 Msa0010700:CDS
GAAGTCCCAAGGATGTTGTG+AGG 0.766407 1_1:-16208429 None:intergenic
ACACAGGGAGATATGCAACG+AGG 0.767390 1_1:+16210192 Msa0010700:CDS
ATGTGATGGAATCAACTCTG+TGG 0.777353 1_1:+16205817 Msa0010700:CDS
AAAGTGGTTAGGCTTCAAGG+AGG 0.779828 1_1:+16205844 Msa0010700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAAAATATATGATATGT+CGG - chr1_1:16204766-16204785 None:intergenic 10.0%
!!! TATTTTAAATTTGTTTGTAA+TGG + chr1_1:16204776-16204795 Msa0010700:CDS 10.0%
!!! AATATAATTTGTAATTGAAA+AGG + chr1_1:16205784-16205803 Msa0010700:intron 10.0%
!!! AAGTTTGTATTAATTTTTTA+AGG - chr1_1:16207185-16207204 None:intergenic 10.0%
!! AAATAATAATAAAAACTCAA+AGG + chr1_1:16207498-16207517 Msa0010700:intron 10.0%
!! TATTCTAATAAAAACTTAAA+AGG + chr1_1:16208331-16208350 Msa0010700:intron 10.0%
!!! TCTAATTAATTTTAAATAGA+AGG + chr1_1:16208582-16208601 Msa0010700:intron 10.0%
!!! CTAATTAATTTTAAATAGAA+GGG + chr1_1:16208583-16208602 Msa0010700:intron 10.0%
!!! CATTTTTATAAGTATTATTA+AGG - chr1_1:16208767-16208786 None:intergenic 10.0%
!!! TTTTCATTTATATAAATATG+GGG - chr1_1:16208902-16208921 None:intergenic 10.0%
!!! GATTTTCATTTATATAAATA+TGG - chr1_1:16208904-16208923 None:intergenic 10.0%
!!! TAATTTGATTTTTAAAACAT+TGG - chr1_1:16210407-16210426 None:intergenic 10.0%
!!! TTATTTTCTAGATTAATAAT+CGG - chr1_1:16210591-16210610 None:intergenic 10.0%
!!! AAAATTGGTTACATTTTTTA+GGG + chr1_1:16206617-16206636 Msa0010700:CDS 15.0%
!!! AATAATATAAAGTATTACGT+GGG - chr1_1:16207330-16207349 None:intergenic 15.0%
!!! AAATAATATAAAGTATTACG+TGG - chr1_1:16207331-16207350 None:intergenic 15.0%
!!! CTTATTTTTTTAATCAAAGT+TGG - chr1_1:16207852-16207871 None:intergenic 15.0%
!! TAAATATCTTGAAGTTTAAT+TGG - chr1_1:16208044-16208063 None:intergenic 15.0%
!! AGAAGTTTCTATATATAATT+GGG - chr1_1:16208243-16208262 None:intergenic 15.0%
!! TAGAATAGAAATATATAGAA+TGG - chr1_1:16208318-16208337 None:intergenic 15.0%
!!! CTTTTTTGTTTCTTTTTTTA+AGG - chr1_1:16208636-16208655 None:intergenic 15.0%
!! CTTAAAAAAAGAAACAAAAA+AGG + chr1_1:16208634-16208653 Msa0010700:intron 15.0%
!! TTTCATTTATATAAATATGG+GGG - chr1_1:16208901-16208920 None:intergenic 15.0%
!!! ATTATTGCAAATTATTTTGT+TGG + chr1_1:16211029-16211048 Msa0010700:CDS 15.0%
!! ACAAACATATACATCTTTAT+GGG + chr1_1:16205111-16205130 Msa0010700:CDS 20.0%
!! AAAAATTGAATAAAACAAGC+TGG - chr1_1:16205404-16205423 None:intergenic 20.0%
!!! CAAAATTGGTTACATTTTTT+AGG + chr1_1:16206616-16206635 Msa0010700:CDS 20.0%
!!! ATTTTTTAGGGACAAAATTT+TGG + chr1_1:16206629-16206648 Msa0010700:CDS 20.0%
!! TGTGTTTAGATAATTATACA+AGG - chr1_1:16206739-16206758 None:intergenic 20.0%
!! AACGACATTTAAAAAGAAAT+CGG - chr1_1:16206973-16206992 None:intergenic 20.0%
!! TTATAAAAGTTGTCACAAAA+TGG - chr1_1:16207042-16207061 None:intergenic 20.0%
!! TGACAATTAAAAAAGAACAT+AGG + chr1_1:16207246-16207265 Msa0010700:intron 20.0%
!! AGTTATATTGTAAGATTAGT+GGG - chr1_1:16207431-16207450 None:intergenic 20.0%
!! AAGTTATATTGTAAGATTAG+TGG - chr1_1:16207432-16207451 None:intergenic 20.0%
!! AAAGTTGTTAAAATAACGTA+TGG + chr1_1:16208146-16208165 Msa0010700:intron 20.0%
!! GAGAAGTTTCTATATATAAT+TGG - chr1_1:16208244-16208263 None:intergenic 20.0%
!! AAATGAAAATCACACATAAA+TGG + chr1_1:16208913-16208932 Msa0010700:intron 20.0%
!! GTAAGATTTAAACTAAGTTT+AGG + chr1_1:16209239-16209258 Msa0010700:intron 20.0%
!!! CATTTTTAGAAAATGTAGTA+GGG - chr1_1:16209521-16209540 None:intergenic 20.0%
!!! TCATTTTTAGAAAATGTAGT+AGG - chr1_1:16209522-16209541 None:intergenic 20.0%
!!! TTTATATAACTGACTCTTTA+GGG - chr1_1:16209570-16209589 None:intergenic 20.0%
!!! TTTTATATAACTGACTCTTT+AGG - chr1_1:16209571-16209590 None:intergenic 20.0%
!! ATCCATATATAATAAAACAG+AGG - chr1_1:16209869-16209888 None:intergenic 20.0%
!! CTTCATATCAAATTTAAGAA+CGG - chr1_1:16209914-16209933 None:intergenic 20.0%
!! TATTGGAAGAAATTTATTGT+TGG + chr1_1:16209987-16210006 Msa0010700:intron 20.0%
!! AAAATATTACATCTTGTTGA+TGG + chr1_1:16210083-16210102 Msa0010700:CDS 20.0%
!! ATTTGTATAAGCAAAAGAAA+GGG - chr1_1:16210367-16210386 None:intergenic 20.0%
!! AATTTGTATAAGCAAAAGAA+AGG - chr1_1:16210368-16210387 None:intergenic 20.0%
!! AAAATCAAATTAGAGAATGA+CGG + chr1_1:16210415-16210434 Msa0010700:intron 20.0%
!! TAAAAATAAAGAATGTCAAG+TGG + chr1_1:16210506-16210525 Msa0010700:intron 20.0%
!! CAACCAATCTAAATTATAAT+CGG + chr1_1:16210532-16210551 Msa0010700:intron 20.0%
!! AACCAATCTAAATTATAATC+GGG + chr1_1:16210533-16210552 Msa0010700:intron 20.0%
!! ATGAAATGTTTAACATCATT+TGG - chr1_1:16210708-16210727 None:intergenic 20.0%
!!! ATAATGGGAAATATTAGTAA+AGG + chr1_1:16210792-16210811 Msa0010700:CDS 20.0%
!!! AAGAAATCTAATTTTGATTG+TGG + chr1_1:16211134-16211153 Msa0010700:CDS 20.0%
! AAAATATATGATATGTCGGT+CGG - chr1_1:16204762-16204781 None:intergenic 25.0%
! TGAAGATTACAGAATTGAAA+AGG - chr1_1:16204894-16204913 None:intergenic 25.0%
!!! TTTTTTTATTGTGATGTCGT+TGG + chr1_1:16204960-16204979 Msa0010700:intron 25.0%
! CATAAAGATGTATATGTTTG+TGG - chr1_1:16205112-16205131 None:intergenic 25.0%
! CACAAACATATACATCTTTA+TGG + chr1_1:16205110-16205129 Msa0010700:CDS 25.0%
! TACTCGATATCAATATATAG+AGG + chr1_1:16205426-16205445 Msa0010700:intron 25.0%
! AAAATACTACATCTTGTTGA+TGG + chr1_1:16205614-16205633 Msa0010700:CDS 25.0%
!!! GTAATTGAAAAGGTATTGAT+AGG + chr1_1:16205794-16205813 Msa0010700:intron 25.0%
! AAAAAAAAGGAATTGACCTT+GGG - chr1_1:16206032-16206051 None:intergenic 25.0%
! AAAAAAAAAGGAATTGACCT+TGG - chr1_1:16206033-16206052 None:intergenic 25.0%
! TTCAACATGCTCAAAAAAAA+AGG - chr1_1:16206045-16206064 None:intergenic 25.0%
! CATTAAAAATAAGACCATTC+TGG - chr1_1:16206088-16206107 None:intergenic 25.0%
! TTGATCAATTAACATGACAA+TGG - chr1_1:16206145-16206164 None:intergenic 25.0%
! ATGATAGATCTAACATTACT+TGG - chr1_1:16206250-16206269 None:intergenic 25.0%
! ATTAAGATATAGACATCCTT+GGG + chr1_1:16206306-16206325 Msa0010700:CDS 25.0%
!! ATAATGGGAAATATTAGCAA+AGG + chr1_1:16206334-16206353 Msa0010700:CDS 25.0%
! AAATACAAAAGAATTGAGGA+AGG + chr1_1:16206504-16206523 Msa0010700:intron 25.0%
! AATACAAAAGAATTGAGGAA+GGG + chr1_1:16206505-16206524 Msa0010700:intron 25.0%
! AATATGCAAATGAAAGAAGA+TGG + chr1_1:16206535-16206554 Msa0010700:intron 25.0%
! TAGTGAAGAAAGAAAACTAT+TGG - chr1_1:16206820-16206839 None:intergenic 25.0%
! ACGACATTTAAAAAGAAATC+GGG - chr1_1:16206972-16206991 None:intergenic 25.0%
! AAGAAAAGTAGATATTGACA+TGG - chr1_1:16207106-16207125 None:intergenic 25.0%
! AGTTGAGTGGTTTAAATAAT+TGG - chr1_1:16207362-16207381 None:intergenic 25.0%
! ATTTAGAAAATGTAGTTGAG+TGG - chr1_1:16207375-16207394 None:intergenic 25.0%
! AATAAAAACTCAAAGGCAAA+TGG + chr1_1:16207505-16207524 Msa0010700:intron 25.0%
! TTTGTGTGACATTAATATCA+CGG + chr1_1:16207599-16207618 Msa0010700:intron 25.0%
! ACACACACAATTAAACTTTA+TGG - chr1_1:16207922-16207941 None:intergenic 25.0%
! ATGACATGGTATAAAATGAT+CGG - chr1_1:16207952-16207971 None:intergenic 25.0%
! AGTTACATAAAAACATGACA+TGG - chr1_1:16207966-16207985 None:intergenic 25.0%
! TCATGAAATGAAATTACTGT+TGG + chr1_1:16208176-16208195 Msa0010700:intron 25.0%
! TTCTATATATAATTGGGCAA+AGG - chr1_1:16208237-16208256 None:intergenic 25.0%
! TTATATATAGAAACTTCTCG+CGG + chr1_1:16208245-16208264 Msa0010700:intron 25.0%
! GAAAAAGATATTGTGATTGT+AGG + chr1_1:16208391-16208410 Msa0010700:intron 25.0%
! AATTATAAGTGAGTGTAGTT+TGG - chr1_1:16208537-16208556 None:intergenic 25.0%
!! AATATTTGGAATGATGAAAG+TGG + chr1_1:16208711-16208730 Msa0010700:intron 25.0%
!! ATATTTGGAATGATGAAAGT+GGG + chr1_1:16208712-16208731 Msa0010700:intron 25.0%
! AATGAGTGTAAATAATCAAG+TGG + chr1_1:16208783-16208802 Msa0010700:intron 25.0%
!! TGCACCTTAATAATTTTAGA+TGG + chr1_1:16208822-16208841 Msa0010700:intron 25.0%
!! GCACCTTAATAATTTTAGAT+GGG + chr1_1:16208823-16208842 Msa0010700:intron 25.0%
!! ACACCCATCTAAAATTATTA+AGG - chr1_1:16208829-16208848 None:intergenic 25.0%
! ATTACTATCAAACATATGCA+TGG - chr1_1:16209312-16209331 None:intergenic 25.0%
!! TAATATTGATGATTGCAGAT+TGG + chr1_1:16209328-16209347 Msa0010700:intron 25.0%
!! AATATTGATGATTGCAGATT+GGG + chr1_1:16209329-16209348 Msa0010700:intron 25.0%
! TGAAACGAAATAACTTGAAT+TGG + chr1_1:16209690-16209709 Msa0010700:intron 25.0%
!!! TGCCTCTGTTTTATTATATA+TGG + chr1_1:16209864-16209883 Msa0010700:intron 25.0%
! ATACCATTGTTAATATGTAG+AGG + chr1_1:16209887-16209906 Msa0010700:intron 25.0%
! TAGCATAAAAACATACATCA+TGG - chr1_1:16209943-16209962 None:intergenic 25.0%
!!! TGTATGTTTTTATGCTATAG+TGG + chr1_1:16209946-16209965 Msa0010700:intron 25.0%
! GAACAAATTGAATCATGATT+AGG - chr1_1:16210449-16210468 None:intergenic 25.0%
!! CATGATTCAATTTGTTCAAA+CGG + chr1_1:16210452-16210471 Msa0010700:intron 25.0%
! ATCCCGATTATAATTTAGAT+TGG - chr1_1:16210538-16210557 None:intergenic 25.0%
! GATTAATAATCGGATTGAAT+CGG - chr1_1:16210581-16210600 None:intergenic 25.0%
!!! CATATTGTTTTAGTTTAGCA+GGG - chr1_1:16210662-16210681 None:intergenic 25.0%
!!! ACATATTGTTTTAGTTTAGC+AGG - chr1_1:16210663-16210682 None:intergenic 25.0%
! AAGAAGAAGAAGAATACAAA+AGG + chr1_1:16210949-16210968 Msa0010700:CDS 25.0%
!!! TTATTTTGTTGGTTCTATTC+AGG + chr1_1:16211040-16211059 Msa0010700:CDS 25.0%
! AAAATTGGTTAACTTCTTCA+GGG + chr1_1:16211073-16211092 Msa0010700:CDS 25.0%
TGAAGAAGATATTGTGATTG+TGG + chr1_1:16204815-16204834 Msa0010700:CDS 30.0%
GAAGAAGATATTGTGATTGT+GGG + chr1_1:16204816-16204835 Msa0010700:CDS 30.0%
GATTACAGAATTGAAAAGGT+AGG - chr1_1:16204890-16204909 None:intergenic 30.0%
!! TGGATTTGCTTTAGGAATAT+GGG + chr1_1:16205037-16205056 Msa0010700:CDS 30.0%
AAAGATGTATATGTTTGTGG+CGG - chr1_1:16205109-16205128 None:intergenic 30.0%
ACTTAAGTACTTCCTTGAAT+TGG + chr1_1:16205246-16205265 Msa0010700:intron 30.0%
CTTAAGTACTTCCTTGAATT+GGG + chr1_1:16205247-16205266 Msa0010700:intron 30.0%
AATTAGCAACTTTGTCTTTC+AGG + chr1_1:16205307-16205326 Msa0010700:CDS 30.0%
ATTAGCAACTTTGTCTTTCA+GGG + chr1_1:16205308-16205327 Msa0010700:CDS 30.0%
GATATCAATATATAGAGGAC+AGG + chr1_1:16205431-16205450 Msa0010700:intron 30.0%
ATGAGTTATGTAGTGAACTA+CGG + chr1_1:16205486-16205505 Msa0010700:intron 30.0%
TGTTAGAAGGAAGTTATTGT+TGG + chr1_1:16205511-16205530 Msa0010700:CDS 30.0%
! AACTTTTGACATGTACCTAA+TGG - chr1_1:16205567-16205586 None:intergenic 30.0%
!!! ATTGTTTACCTTGGTTTTGA+TGG - chr1_1:16205645-16205664 None:intergenic 30.0%
TCCATATCTACCTGTATAAA+TGG - chr1_1:16205870-16205889 None:intergenic 30.0%
ATACAGGTAGATATGGAATT+AGG + chr1_1:16205873-16205892 Msa0010700:CDS 30.0%
TACAGGTAGATATGGAATTA+GGG + chr1_1:16205874-16205893 Msa0010700:CDS 30.0%
TTCATTGTTTCATTCCAGAA+TGG + chr1_1:16206071-16206090 Msa0010700:intron 30.0%
CATATTGCTTCAGTTTAACA+GGG - chr1_1:16206204-16206223 None:intergenic 30.0%
ACATATTGCTTCAGTTTAAC+AGG - chr1_1:16206205-16206224 None:intergenic 30.0%
TATATCTTAATGGAGCTGAA+TGG - chr1_1:16206297-16206316 None:intergenic 30.0%
CAAGGATGTCTATATCTTAA+TGG - chr1_1:16206307-16206326 None:intergenic 30.0%
CATTAAGATATAGACATCCT+TGG + chr1_1:16206305-16206324 Msa0010700:CDS 30.0%
!!! TTCTTCTTCCTTTGGTTTTT+TGG - chr1_1:16206475-16206494 None:intergenic 30.0%
GGAGAAATACAAAAGAATTG+AGG + chr1_1:16206500-16206519 Msa0010700:intron 30.0%
ATTACTACAGCTTATATTGC+AGG + chr1_1:16206573-16206592 Msa0010700:intron 30.0%
ACAACTCAAATTCATTACCA+CGG - chr1_1:16206780-16206799 None:intergenic 30.0%
GACATTTAAAAAGAAATCGG+GGG - chr1_1:16206970-16206989 None:intergenic 30.0%
CGACATTTAAAAAGAAATCG+GGG - chr1_1:16206971-16206990 None:intergenic 30.0%
! TAAATGTCGTTTGTAAGCAA+AGG + chr1_1:16206982-16207001 Msa0010700:intron 30.0%
TCATTTGTGAGACAATGTTT+AGG - chr1_1:16207146-16207165 None:intergenic 30.0%
!! CATTGTAAGTTTTGTAAGAG+TGG - chr1_1:16207405-16207424 None:intergenic 30.0%
GCATGTCTTCAAAATAGAAT+AGG + chr1_1:16207456-16207475 Msa0010700:intron 30.0%
AATATTTCCCCTATTTAACG+AGG - chr1_1:16207581-16207600 None:intergenic 30.0%
TATGGATACCACTATTTAAC+GGG - chr1_1:16207749-16207768 None:intergenic 30.0%
GTATGGATACCACTATTTAA+CGG - chr1_1:16207750-16207769 None:intergenic 30.0%
!! TTAATCAAAGTTGGTGTTCA+TGG - chr1_1:16207843-16207862 None:intergenic 30.0%
AAATCAAAGGTGAACACAAA+CGG + chr1_1:16207893-16207912 Msa0010700:intron 30.0%
GACATATGCATTTACAGTAT+TGG + chr1_1:16208085-16208104 Msa0010700:intron 30.0%
GTGAGCTATATACTTAGTAA+TGG + chr1_1:16208357-16208376 Msa0010700:intron 30.0%
GTAAATAATCAAGTGGATGT+AGG + chr1_1:16208790-16208809 Msa0010700:intron 30.0%
!! ACTTGCACCTTATTGTTTTT+AGG + chr1_1:16208858-16208877 Msa0010700:intron 30.0%
! ATTTTCACGACAAATTTAGC+TGG + chr1_1:16209164-16209183 Msa0010700:intron 30.0%
!! TTTTAGAAAATGTAGTAGGG+AGG - chr1_1:16209518-16209537 None:intergenic 30.0%
GATGTGAAAATGTTCATGAA+AGG - chr1_1:16209618-16209637 None:intergenic 30.0%
!!! GTGTTTATTGGTTTTTCACA+TGG + chr1_1:16210315-16210334 Msa0010700:intron 30.0%
TATTATTCACCTTGGTTGAT+AGG - chr1_1:16210344-16210363 None:intergenic 30.0%
CAAATTGAATCATGATTAGG+TGG - chr1_1:16210446-16210465 None:intergenic 30.0%
TAACTCTTTATCTGTAAGAC+AGG - chr1_1:16210631-16210650 None:intergenic 30.0%
AGAAGAATACAAAAGGATTG+AGG + chr1_1:16210956-16210975 Msa0010700:CDS 30.0%
AGGTTTCAAGAAATATGCAA+AGG + chr1_1:16210980-16210999 Msa0010700:CDS 30.0%
CAAAATTGGTTAACTTCTTC+AGG + chr1_1:16211072-16211091 Msa0010700:CDS 30.0%
! CTTCTTCAGGGATAAAATTT+TGG + chr1_1:16211085-16211104 Msa0010700:CDS 30.0%
TACAGAATTGAAAAGGTAGG+TGG - chr1_1:16204887-16204906 None:intergenic 35.0%
TCAGATAGTTTGAGAGTAAC+TGG + chr1_1:16205017-16205036 Msa0010700:CDS 35.0%
! AGAGTAACTGGATTTGCTTT+AGG + chr1_1:16205029-16205048 Msa0010700:CDS 35.0%
!! CTGGATTTGCTTTAGGAATA+TGG + chr1_1:16205036-16205055 Msa0010700:CDS 35.0%
TAGGAATATGGGAAAATGCT+TGG + chr1_1:16205048-16205067 Msa0010700:CDS 35.0%
GTGACTACTTCTTTGATTAC+AGG + chr1_1:16205279-16205298 Msa0010700:CDS 35.0%
ATTTGGAAGTTCATTGGCAA+GGG - chr1_1:16205540-16205559 None:intergenic 35.0%
AACTTCCAAATGACACCATT+AGG + chr1_1:16205549-16205568 Msa0010700:CDS 35.0%
!! ATGTACCTAATGGTGTCATT+TGG - chr1_1:16205557-16205576 None:intergenic 35.0%
! GTCAAAAGTTGTTGCTATTG+AGG + chr1_1:16205577-16205596 Msa0010700:CDS 35.0%
GTCACACATATTGTTTACCT+TGG - chr1_1:16205654-16205673 None:intergenic 35.0%
TGTATCAGTCAAAGCAAACA+AGG - chr1_1:16205762-16205781 None:intergenic 35.0%
!! AAGGTATTGATAGGATGTGA+TGG + chr1_1:16205803-16205822 Msa0010700:intron 35.0%
GCCATTTATACAGGTAGATA+TGG + chr1_1:16205866-16205885 Msa0010700:CDS 35.0%
ACAGGTAGATATGGAATTAG+GGG + chr1_1:16205875-16205894 Msa0010700:CDS 35.0%
!!! TATGGCAAAGGTTTTAGAGT+TGG + chr1_1:16205950-16205969 Msa0010700:CDS 35.0%
TAAACACCTTTCTCATGACA+AGG - chr1_1:16205983-16206002 None:intergenic 35.0%
!!! GTGTTTACTGGTTTTTCACT+TGG + chr1_1:16205996-16206015 Msa0010700:CDS 35.0%
AAAGGAAATGTTTGTGTTGC+TGG + chr1_1:16206352-16206371 Msa0010700:CDS 35.0%
!!! TTCCTTTGGTTTTTTGGACA+AGG - chr1_1:16206469-16206488 None:intergenic 35.0%
AAAACCAAAGGAAGAAGAAG+AGG + chr1_1:16206476-16206495 Msa0010700:intron 35.0%
AATAGTTGACCAGCTAGTAA+TGG - chr1_1:16206657-16206676 None:intergenic 35.0%
!!! AAGAAGTCTGGTTTTGATTG+TGG + chr1_1:16206678-16206697 Msa0010700:CDS 35.0%
CTCAATTAGCCCTTAATTAG+TGG + chr1_1:16206705-16206724 Msa0010700:intron 35.0%
! GTAAGTGTGCCACTAATTAA+GGG - chr1_1:16206717-16206736 None:intergenic 35.0%
! ATGATGATGATGAGCAAAGT+TGG + chr1_1:16206850-16206869 Msa0010700:intron 35.0%
GATGTGTAAGGTTGTAATCA+AGG + chr1_1:16206872-16206891 Msa0010700:intron 35.0%
ATTTATACCACCATGTAGAG+TGG - chr1_1:16207303-16207322 None:intergenic 35.0%
ACTCTACATGGTGGTATAAA+TGG + chr1_1:16207302-16207321 Msa0010700:intron 35.0%
CTCTACATGGTGGTATAAAT+GGG + chr1_1:16207303-16207322 Msa0010700:intron 35.0%
AAACTCAAAGGCAAATGGTA+TGG + chr1_1:16207510-16207529 Msa0010700:intron 35.0%
AAAGGCAAATGGTATGGATA+CGG + chr1_1:16207516-16207535 Msa0010700:intron 35.0%
TACTACCACCTCGTTAAATA+GGG + chr1_1:16207570-16207589 Msa0010700:intron 35.0%
TATCACGGTGACATTAAATC+TGG + chr1_1:16207614-16207633 Msa0010700:intron 35.0%
ATCACGGTGACATTAAATCT+GGG + chr1_1:16207615-16207634 Msa0010700:intron 35.0%
ATTAAATCTGGGCCATACAT+TGG + chr1_1:16207626-16207645 Msa0010700:intron 35.0%
TTAAATCTGGGCCATACATT+GGG + chr1_1:16207627-16207646 Msa0010700:intron 35.0%
ATCTAATGTCACCCAATGTA+TGG - chr1_1:16207641-16207660 None:intergenic 35.0%
ACTTCTTAGAGCACAAACAT+CGG - chr1_1:16207807-16207826 None:intergenic 35.0%
TTGGCACTATGATATATCAG+TGG + chr1_1:16208195-16208214 Msa0010700:intron 35.0%
ATATAATTGGGCAAAGGTCA+AGG - chr1_1:16208231-16208250 None:intergenic 35.0%
AAAAGGCAATGACATGCTTA+AGG + chr1_1:16208651-16208670 Msa0010700:intron 35.0%
AAGTGGGTGTAAATTAGTGA+AGG + chr1_1:16208728-16208747 Msa0010700:intron 35.0%
!!! TGCACCTTATTGTTTTTAGG+TGG + chr1_1:16208861-16208880 Msa0010700:intron 35.0%
!!! GCACCTTATTGTTTTTAGGT+GGG + chr1_1:16208862-16208881 Msa0010700:intron 35.0%
ACACCCACCTAAAAACAATA+AGG - chr1_1:16208868-16208887 None:intergenic 35.0%
GAAAATCACACATAAATGGC+AGG + chr1_1:16208917-16208936 Msa0010700:intron 35.0%
TGATATGTATGGATGTGTGT+GGG - chr1_1:16209060-16209079 None:intergenic 35.0%
TTGATATGTATGGATGTGTG+TGG - chr1_1:16209061-16209080 None:intergenic 35.0%
CACACATCCATACATATCAA+CGG + chr1_1:16209061-16209080 Msa0010700:intron 35.0%
!!! ATTTAGCTGGCTAGTTTTAG+TGG + chr1_1:16209177-16209196 Msa0010700:intron 35.0%
!!! TTTAGCTGGCTAGTTTTAGT+GGG + chr1_1:16209178-16209197 Msa0010700:intron 35.0%
! AGTCAGTGGATTTGCTTTAA+CGG + chr1_1:16209391-16209410 Msa0010700:intron 35.0%
! TGGATTTGCTTTAACGGTAT+GGG + chr1_1:16209397-16209416 Msa0010700:CDS 35.0%
ACCAACATCTACAACTTCAT+GGG + chr1_1:16209471-16209490 Msa0010700:CDS 35.0%
TCAGGTCATCTTAAAGAATG+AGG - chr1_1:16209657-16209676 None:intergenic 35.0%
AATAACTTGAATTGGAGTGC+AGG + chr1_1:16209698-16209717 Msa0010700:intron 35.0%
TGTGACTACTTCTTTGGTTA+TGG + chr1_1:16209723-16209742 Msa0010700:CDS 35.0%
GTGACTACTTCTTTGGTTAT+GGG + chr1_1:16209724-16209743 Msa0010700:CDS 35.0%
TGACTACTTCTTTGGTTATG+GGG + chr1_1:16209725-16209744 Msa0010700:CDS 35.0%
ACGTCTTTCATAGACAACAA+AGG + chr1_1:16209763-16209782 Msa0010700:CDS 35.0%
GGTCCTCTACATATTAACAA+TGG - chr1_1:16209893-16209912 None:intergenic 35.0%
!!! AATCAACACCTTGGTTTTGA+TGG - chr1_1:16210114-16210133 None:intergenic 35.0%
!! ATCAAAACCAAGGTGTTGAT+TGG + chr1_1:16210113-16210132 Msa0010700:CDS 35.0%
!! TCAAAACCAAGGTGTTGATT+GGG + chr1_1:16210114-16210133 Msa0010700:CDS 35.0%
! AGTACTTTGGCAAAGGTTTT+AGG + chr1_1:16210264-16210283 Msa0010700:CDS 35.0%
! GTACTTTGGCAAAGGTTTTA+GGG + chr1_1:16210265-16210284 Msa0010700:CDS 35.0%
!! AGAAAGGGTATTATTCACCT+TGG - chr1_1:16210352-16210371 None:intergenic 35.0%
GATCAAATCAACTAGTGAGT+TGG + chr1_1:16210555-16210574 Msa0010700:intron 35.0%
ATTGAGACATAGACATCCTT+GGG + chr1_1:16210764-16210783 Msa0010700:CDS 35.0%
!!! GGCTTTTTTGAAGAAACCAA+AGG + chr1_1:16210923-16210942 Msa0010700:CDS 35.0%
TCTTCTTCTTCTTCTTCCTT+TGG - chr1_1:16210942-16210961 None:intergenic 35.0%
GAATACAAAAGGATTGAGGA+AGG + chr1_1:16210960-16210979 Msa0010700:CDS 35.0%
AATATGCAAAGGAGAGAAGA+TGG + chr1_1:16210991-16211010 Msa0010700:CDS 35.0%
TCAGGAAAGTGGTTCAAAAT+TGG + chr1_1:16211058-16211077 Msa0010700:CDS 35.0%
AGCTGTTATAACTGGACACA+AGG + chr1_1:16204705-16204724 Msa0010700:CDS 40.0%
TTTATTGTGATGTCGTTGGC+AGG + chr1_1:16204964-16204983 Msa0010700:intron 40.0%
GGGTGTAAGAAGTTTGGTAT+TGG + chr1_1:16204989-16205008 Msa0010700:CDS 40.0%
ACTTTGTCTTTCAGGGACAA+AGG + chr1_1:16205315-16205334 Msa0010700:CDS 40.0%
CATTTGGAAGTTCATTGGCA+AGG - chr1_1:16205541-16205560 None:intergenic 40.0%
!! GGTGTCATTTGGAAGTTCAT+TGG - chr1_1:16205546-16205565 None:intergenic 40.0%
! GTTGTTGCTATTGAGGAATC+TGG + chr1_1:16205584-16205603 Msa0010700:CDS 40.0%
TGGAACAACCATCAAAACCA+AGG + chr1_1:16205634-16205653 Msa0010700:CDS 40.0%
! ATGTGATGGAATCAACTCTG+TGG + chr1_1:16205817-16205836 Msa0010700:CDS 40.0%
TTCAAGGAGGCCATTTATAC+AGG + chr1_1:16205857-16205876 Msa0010700:CDS 40.0%
! AATTAGGGGTTTTGCAGAGT+TGG + chr1_1:16205889-16205908 Msa0010700:CDS 40.0%
CCATAGAACTGCATAAGCAT+AGG - chr1_1:16205935-16205954 None:intergenic 40.0%
CCTATGCTTATGCAGTTCTA+TGG + chr1_1:16205932-16205951 Msa0010700:CDS 40.0%
CTTATGCAGTTCTATGGCAA+AGG + chr1_1:16205938-16205957 Msa0010700:CDS 40.0%
GTTGTTCCTTGTCATGAGAA+AGG + chr1_1:16205974-16205993 Msa0010700:CDS 40.0%
!! GTCATGAGAAAGGTGTTTAC+TGG + chr1_1:16205984-16206003 Msa0010700:CDS 40.0%
AAAAAGGAATTGACCTTGGG+TGG - chr1_1:16206029-16206048 None:intergenic 40.0%
!! CTTGACTTGTGTTGCAGATA+AGG + chr1_1:16206165-16206184 Msa0010700:intron 40.0%
TGTTGCAGATAAGGAGCTAA+TGG + chr1_1:16206174-16206193 Msa0010700:intron 40.0%
! AGCCTTGTCCAAAAAACCAA+AGG + chr1_1:16206464-16206483 Msa0010700:intron 40.0%
!! TATTGCAGGTGTTATTCAGC+AGG + chr1_1:16206587-16206606 Msa0010700:intron 40.0%
! TCAGCAGGCTGATTCAAAAT+TGG + chr1_1:16206602-16206621 Msa0010700:CDS 40.0%
!!! ATTTTGGCTCCATTACTAGC+TGG + chr1_1:16206645-16206664 Msa0010700:CDS 40.0%
GGTCAACTATTCAAGAAGTC+TGG + chr1_1:16206666-16206685 Msa0010700:CDS 40.0%
! GGTAAGTGTGCCACTAATTA+AGG - chr1_1:16206718-16206737 None:intergenic 40.0%
TGAGCAAAGTTGGATGTGTA+AGG + chr1_1:16206860-16206879 Msa0010700:intron 40.0%
TACGGTTCCATTCTTTACCA+CGG + chr1_1:16207534-16207553 Msa0010700:intron 40.0%
CTACTACCACCTCGTTAAAT+AGG + chr1_1:16207569-16207588 Msa0010700:intron 40.0%
ACTACCACCTCGTTAAATAG+GGG + chr1_1:16207571-16207590 Msa0010700:intron 40.0%
ATTTCCCCTATTTAACGAGG+TGG - chr1_1:16207578-16207597 None:intergenic 40.0%
TTGTCATTGCCATTGCATCT+GGG - chr1_1:16207675-16207694 None:intergenic 40.0%
ATTGTCATTGCCATTGCATC+TGG - chr1_1:16207676-16207695 None:intergenic 40.0%
GCTATAGGTAAGGATGATGA+TGG - chr1_1:16208285-16208304 None:intergenic 40.0%
!! ACAGAAGCTTGCTATAGGTA+AGG - chr1_1:16208295-16208314 None:intergenic 40.0%
!! AATGGACAGAAGCTTGCTAT+AGG - chr1_1:16208300-16208319 None:intergenic 40.0%
GATATTGTGATTGTAGGAGC+TGG + chr1_1:16208397-16208416 Msa0010700:intron 40.0%
ACACATAAATGGCAGGTAAG+CGG + chr1_1:16208924-16208943 Msa0010700:intron 40.0%
TGGAGTCCAAAAAGACTTAG+CGG - chr1_1:16208963-16208982 None:intergenic 40.0%
! AGTCTTTTTGGACTCCACTT+TGG + chr1_1:16208966-16208985 Msa0010700:intron 40.0%
GATATGTATGGATGTGTGTG+GGG - chr1_1:16209059-16209078 None:intergenic 40.0%
ATACTTCAGTGCCATAGCAA+TGG - chr1_1:16209116-16209135 None:intergenic 40.0%
!! CAGATTGGGCATTGAAAGTT+TGG + chr1_1:16209343-16209362 Msa0010700:intron 40.0%
TCAGATAGTTTGAGAGTCAG+TGG + chr1_1:16209377-16209396 Msa0010700:intron 40.0%
! GTGGATTTGCTTTAACGGTA+TGG + chr1_1:16209396-16209415 Msa0010700:CDS 40.0%
TAACGGTATGGGAAAATGCT+TGG + chr1_1:16209408-16209427 Msa0010700:CDS 40.0%
CATGAAGTTGTAGATGTTGG+TGG - chr1_1:16209472-16209491 None:intergenic 40.0%
CACCAACATCTACAACTTCA+TGG + chr1_1:16209470-16209489 Msa0010700:CDS 40.0%
ACCCATGAAGTTGTAGATGT+TGG - chr1_1:16209475-16209494 None:intergenic 40.0%
TATTTCGTTTCAGCCTCTCT+TGG - chr1_1:16209682-16209701 None:intergenic 40.0%
CAGGAATGTGACTACTTCTT+TGG + chr1_1:16205272-16205291 Msa0010700:intron 40.0%
TTCCAATACACCGAACTTCA+CGG - chr1_1:16209975-16209994 None:intergenic 40.0%
TAGCAACAACCTGTACCTAA+TGG - chr1_1:16210043-16210062 None:intergenic 40.0%
! GTTGTTGCTATTCAGGAATC+TGG + chr1_1:16210053-16210072 Msa0010700:intron 40.0%
TGGAACAACCATCAAAACCA+AGG + chr1_1:16205634-16205653 Msa0010700:CDS 40.0%
!! CCAAAGTACTGCATGAACAT+TGG - chr1_1:16210254-16210273 None:intergenic 40.0%
CCAATGTTCATGCAGTACTT+TGG + chr1_1:16210251-16210270 Msa0010700:CDS 40.0%
TTCATGCAGTACTTTGGCAA+AGG + chr1_1:16210257-16210276 Msa0010700:CDS 40.0%
AGCTATTCCATGTGATGACA+AGG + chr1_1:16210292-16210311 Msa0010700:CDS 40.0%
GCTATTCCATGTGATGACAA+GGG + chr1_1:16210293-16210312 Msa0010700:CDS 40.0%
TAAACACCCTTGTCATCACA+TGG - chr1_1:16210302-16210321 None:intergenic 40.0%
!! GTGATGACAAGGGTGTTTAT+TGG + chr1_1:16210303-16210322 Msa0010700:intron 40.0%
CAAGGATGTCTATGTCTCAA+TGG - chr1_1:16210765-16210784 None:intergenic 40.0%
CATTGAGACATAGACATCCT+TGG + chr1_1:16210763-16210782 Msa0010700:CDS 40.0%
ACATCCTTGGGAGCTAATAA+TGG + chr1_1:16210776-16210795 Msa0010700:CDS 40.0%
CATCCTTGGGAGCTAATAAT+GGG + chr1_1:16210777-16210796 Msa0010700:CDS 40.0%
TTTCCCATTATTAGCTCCCA+AGG - chr1_1:16210783-16210802 None:intergenic 40.0%
AAAGGCAATGTTTGTGTTGC+TGG + chr1_1:16210810-16210829 Msa0010700:CDS 40.0%
! GGTGTTGTGCATTAGAAGAT+GGG + chr1_1:16210874-16210893 Msa0010700:CDS 40.0%
GTGTTGTGCATTAGAAGATG+GGG + chr1_1:16210875-16210894 Msa0010700:CDS 40.0%
!! GTTGGTTCTATTCAGGAAAG+TGG + chr1_1:16211047-16211066 Msa0010700:CDS 40.0%
GATATTGTGATTGTGGGAGC+TGG + chr1_1:16204822-16204841 Msa0010700:CDS 45.0%
GAAGTCCTAAGGCAGTAGTA+AGG - chr1_1:16204857-16204876 None:intergenic 45.0%
! CAGGTTGGGTGTAAGAAGTT+TGG + chr1_1:16204983-16205002 Msa0010700:intron 45.0%
GGAAAATGCTTGGAAAGCCT+TGG + chr1_1:16205058-16205077 Msa0010700:CDS 45.0%
GATGTATATGTTTGTGGCGG+AGG - chr1_1:16205106-16205125 None:intergenic 45.0%
TACTTCCTTGAATTGGGTGC+AGG + chr1_1:16205253-16205272 Msa0010700:intron 45.0%
ACATTCCTGCACCCAATTCA+AGG - chr1_1:16205261-16205280 None:intergenic 45.0%
! GTGAACTACGGAGTGTTAGA+AGG + chr1_1:16205498-16205517 Msa0010700:intron 45.0%
TCAACTCTGTGGTTGCAAAG+TGG + chr1_1:16205828-16205847 Msa0010700:CDS 45.0%
TCTGTGGTTGCAAAGTGGTT+AGG + chr1_1:16205833-16205852 Msa0010700:CDS 45.0%
TGCAAAGTGGTTAGGCTTCA+AGG + chr1_1:16205841-16205860 Msa0010700:CDS 45.0%
AAAGTGGTTAGGCTTCAAGG+AGG + chr1_1:16205844-16205863 Msa0010700:CDS 45.0%
ACATCCTTGGGAGCTCATAA+TGG + chr1_1:16206318-16206337 Msa0010700:CDS 45.0%
CATCCTTGGGAGCTCATAAT+GGG + chr1_1:16206319-16206338 Msa0010700:CDS 45.0%
TTTCCCATTATGAGCTCCCA+AGG - chr1_1:16206325-16206344 None:intergenic 45.0%
! TGACCAAGATCAGGTGTCAT+GGG - chr1_1:16206391-16206410 None:intergenic 45.0%
TTGACCAAGATCAGGTGTCA+TGG - chr1_1:16206392-16206411 None:intergenic 45.0%
ATGACACCTGATCTTGGTCA+AGG + chr1_1:16206391-16206410 Msa0010700:CDS 45.0%
TGACACCTGATCTTGGTCAA+GGG + chr1_1:16206392-16206411 Msa0010700:CDS 45.0%
!! GGTGTTGTGCTTTAGAGGAT+GGG + chr1_1:16206415-16206434 Msa0010700:intron 45.0%
!! GTGTTGTGCTTTAGAGGATG+GGG + chr1_1:16206416-16206435 Msa0010700:intron 45.0%
ACCAAAGGAAGAAGAAGAGG+AGG + chr1_1:16206479-16206498 Msa0010700:intron 45.0%
TCCTCCTCTTCTTCTTCCTT+TGG - chr1_1:16206483-16206502 None:intergenic 45.0%
!!! TGTCGCTTTTCTTTTTGCCG+TGG + chr1_1:16206760-16206779 Msa0010700:intron 45.0%
ATGTAGAGTGGCATGGATGT+GGG - chr1_1:16207291-16207310 None:intergenic 45.0%
GTTGGAACCGTGGTAAAGAA+TGG - chr1_1:16207544-16207563 None:intergenic 45.0%
TAACGAGGTGGTAGTAGCAT+TGG - chr1_1:16207566-16207585 None:intergenic 45.0%
GCAATGGCAATGACAATGTG+TGG + chr1_1:16207679-16207698 Msa0010700:intron 45.0%
! CTATTTAACGGGTGGCACTT+TGG - chr1_1:16207738-16207757 None:intergenic 45.0%
AAGTGCCACCCGTTAAATAG+TGG + chr1_1:16207738-16207757 Msa0010700:intron 45.0%
GGATACCACTATTTAACGGG+TGG - chr1_1:16207746-16207765 None:intergenic 45.0%
TGTGGCATCTTGTGTCAGTA+TGG - chr1_1:16207767-16207786 None:intergenic 45.0%
TCTTAGAGCACAAACATCGG+TGG - chr1_1:16207804-16207823 None:intergenic 45.0%
ATTGTAGGAGCTGGAATTGC+TGG + chr1_1:16208406-16208425 Msa0010700:intron 45.0%
! GTTTCGCCGCTAAGTCTTTT+TGG + chr1_1:16208954-16208973 Msa0010700:intron 45.0%
!! CTCCACTTTGGTGCCATTAA+TGG + chr1_1:16208978-16208997 Msa0010700:intron 45.0%
TGCCATTAATGGCACCAAAG+TGG - chr1_1:16208983-16209002 None:intergenic 45.0%
!! ATGCAATGGTATGGTGCCAT+TGG - chr1_1:16209006-16209025 None:intergenic 45.0%
ATCCATACATATCAACGGCC+AGG + chr1_1:16209066-16209085 Msa0010700:intron 45.0%
ATCCTGGCCGTTGATATGTA+TGG - chr1_1:16209071-16209090 None:intergenic 45.0%
TACATATCAACGGCCAGGAT+TGG + chr1_1:16209071-16209090 Msa0010700:intron 45.0%
!! GATTGGTTCTATGGCACCAA+TGG + chr1_1:16209088-16209107 Msa0010700:intron 45.0%
GGTATGGGAAAATGCTTGGA+AGG + chr1_1:16209412-16209431 Msa0010700:CDS 45.0%
! GAAGTTGTAGATGTTGGTGG+CGG - chr1_1:16209469-16209488 None:intergenic 45.0%
TCCAATACACCGAACTTCAC+GGG - chr1_1:16209974-16209993 None:intergenic 45.0%
ACTAGGAAGCTCATTGGCAA+GGG - chr1_1:16210016-16210035 None:intergenic 45.0%
! GGTACAGGTTGTTGCTATTC+AGG + chr1_1:16210046-16210065 Msa0010700:intron 45.0%
ATCACACCCAATCAACACCT+TGG - chr1_1:16210123-16210142 None:intergenic 45.0%
!! AAGGTGTTGATTGGGTGTGA+TGG + chr1_1:16210122-16210141 Msa0010700:CDS 45.0%
! GTGTGATGGAGTAAACTCTG+TGG + chr1_1:16210136-16210155 Msa0010700:CDS 45.0%
TGATGGAGTAAACTCTGTGG+TGG + chr1_1:16210139-16210158 Msa0010700:CDS 45.0%
TAAACTCTGTGGTGGCAAAG+TGG + chr1_1:16210147-16210166 Msa0010700:CDS 45.0%
TTCAACGAAGCCTCATACAC+AGG + chr1_1:16210176-16210195 Msa0010700:CDS 45.0%
TCAACGAAGCCTCATACACA+GGG + chr1_1:16210177-16210196 Msa0010700:CDS 45.0%
TGCATATCTCCCTGTGTATG+AGG - chr1_1:16210189-16210208 None:intergenic 45.0%
!! CATTGGTTCAAGCTTGTGAG+TGG - chr1_1:16210237-16210256 None:intergenic 45.0%
!!! TTTGGCAAAGGTTTTAGGGC+TGG + chr1_1:16210269-16210288 Msa0010700:CDS 45.0%
ACATGGACTCCTATCAACCA+AGG + chr1_1:16210332-16210351 Msa0010700:intron 45.0%
! GGGTGTTGTGCATTAGAAGA+TGG + chr1_1:16210873-16210892 Msa0010700:CDS 45.0%
TTGTGCATTAGAAGATGGGG+TGG + chr1_1:16210878-16210897 Msa0010700:CDS 45.0%
! TTTAGCGAGGTGTTTAGCTG+AGG + chr1_1:16210902-16210921 Msa0010700:CDS 45.0%
!! TAAAATATTAAAAAAATCAA+AGG + chr1_1:16207880-16207899 Msa0010700:intron 5.0%
!!! ATTTTCATTTATATAAATAT+GGG - chr1_1:16208903-16208922 None:intergenic 5.0%
CTGGACACAAGGTTACTCTC+CGG + chr1_1:16204716-16204735 Msa0010700:CDS 50.0%
ATTGTGGGAGCTGGAATTGC+TGG + chr1_1:16204831-16204850 Msa0010700:CDS 50.0%
CTACTGCCTTAGGACTTCAC+AGG + chr1_1:16204859-16204878 Msa0010700:CDS 50.0%
GTGGTACCTGTGAAGTCCTA+AGG - chr1_1:16204868-16204887 None:intergenic 50.0%
TTGTGATGTCGTTGGCAGGT+TGG + chr1_1:16204968-16204987 Msa0010700:intron 50.0%
TGTGATGTCGTTGGCAGGTT+GGG + chr1_1:16204969-16204988 Msa0010700:intron 50.0%
TGGAAAGCCTTGGATGCTGT+TGG + chr1_1:16205068-16205087 Msa0010700:CDS 50.0%
TCCAACACCAACAGCATCCA+AGG - chr1_1:16205078-16205097 None:intergenic 50.0%
AGGAATTGACCTTGGGTGGT+AGG - chr1_1:16206025-16206044 None:intergenic 50.0%
! GACCAAGATCAGGTGTCATG+GGG - chr1_1:16206390-16206409 None:intergenic 50.0%
GACACCTGATCTTGGTCAAG+GGG + chr1_1:16206393-16206412 Msa0010700:CDS 50.0%
ACACCTGATCTTGGTCAAGG+GGG + chr1_1:16206394-16206413 Msa0010700:CDS 50.0%
!! AAGGGGGTGTTGTGCTTTAG+AGG + chr1_1:16206410-16206429 Msa0010700:intron 50.0%
!! GGGTGTTGTGCTTTAGAGGA+TGG + chr1_1:16206414-16206433 Msa0010700:intron 50.0%
!! TTGTGCTTTAGAGGATGGGG+TGG + chr1_1:16206419-16206438 Msa0010700:intron 50.0%
!!! AGGATGGGGTGGTTTTAGCA+AGG + chr1_1:16206430-16206449 Msa0010700:intron 50.0%
CATGTAGAGTGGCATGGATG+TGG - chr1_1:16207292-16207311 None:intergenic 50.0%
CACATCCATGCCACTCTACA+TGG + chr1_1:16207290-16207309 Msa0010700:intron 50.0%
ATCCATGCCACTCTACATGG+TGG + chr1_1:16207293-16207312 Msa0010700:intron 50.0%
TACCACCATGTAGAGTGGCA+TGG - chr1_1:16207298-16207317 None:intergenic 50.0%
!! AGTAGCATTGGTTGGAACCG+TGG - chr1_1:16207554-16207573 None:intergenic 50.0%
!! GAGGTGGTAGTAGCATTGGT+TGG - chr1_1:16207562-16207581 None:intergenic 50.0%
GTTGTGTGACCCAGATGCAA+TGG + chr1_1:16207663-16207682 Msa0010700:intron 50.0%
AATGTGTGGCCCAGATGCAA+TGG + chr1_1:16207693-16207712 Msa0010700:intron 50.0%
! GTCACTGTGCCATTGCATCT+GGG - chr1_1:16207705-16207724 None:intergenic 50.0%
! TGTCACTGTGCCATTGCATC+TGG - chr1_1:16207706-16207725 None:intergenic 50.0%
TAGAGCACAAACATCGGTGG+TGG - chr1_1:16207801-16207820 None:intergenic 50.0%
GAAGTCCCAAGGATGTTGTG+AGG - chr1_1:16208432-16208451 None:intergenic 50.0%
CAACATCCTTGGGACTTCAC+AGG + chr1_1:16208434-16208453 Msa0010700:CDS 50.0%
! AGAGTACCTGTGAAGTCCCA+AGG - chr1_1:16208443-16208462 None:intergenic 50.0%
!! GGTGCCATTAATGGCACCAA+TGG + chr1_1:16208987-16209006 Msa0010700:intron 50.0%
!! GGTGCCATTGGTGCCATTAA+TGG - chr1_1:16208994-16209013 None:intergenic 50.0%
! GTGGTGGAGATGCAATGGTA+TGG - chr1_1:16209015-16209034 None:intergenic 50.0%
! TGTGTGTGGTGGAGATGCAA+TGG - chr1_1:16209020-16209039 None:intergenic 50.0%
TGTGTGATGTGTGTGTGTGG+TGG - chr1_1:16209031-16209050 None:intergenic 50.0%
GTGTGTGTGATGTGTGTGTG+TGG - chr1_1:16209034-16209053 None:intergenic 50.0%
!! AACGGCCAGGATTGGTTCTA+TGG + chr1_1:16209079-16209098 Msa0010700:intron 50.0%
!! TGGTGCCATAGAACCAATCC+TGG - chr1_1:16209087-16209106 None:intergenic 50.0%
CACCAATGGCACCATTGCTA+TGG + chr1_1:16209102-16209121 Msa0010700:intron 50.0%
!! TGCCATAGCAATGGTGCCAT+TGG - chr1_1:16209107-16209126 None:intergenic 50.0%
! GGAAAATGCTTGGAAGGCGT+TGG + chr1_1:16209418-16209437 Msa0010700:CDS 50.0%
AGATGACCTGATGCCAAGAG+AGG + chr1_1:16209666-16209685 Msa0010700:intron 50.0%
TTTCAGCCTCTCTTGGCATC+AGG - chr1_1:16209675-16209694 None:intergenic 50.0%
! ATAGTGGAGCCCGTGAAGTT+CGG + chr1_1:16209962-16209981 Msa0010700:intron 50.0%
CTAGGAAGCTCATTGGCAAG+GGG - chr1_1:16210015-16210034 None:intergenic 50.0%
CACTAGGAAGCTCATTGGCA+AGG - chr1_1:16210017-16210036 None:intergenic 50.0%
CTTGCCAATGAGCTTCCTAG+TGG + chr1_1:16210015-16210034 Msa0010700:intron 50.0%
AGCTTCCTAGTGGCACCATT+AGG + chr1_1:16210025-16210044 Msa0010700:intron 50.0%
!! CTGTACCTAATGGTGCCACT+AGG - chr1_1:16210033-16210052 None:intergenic 50.0%
CTAGTGGCACCATTAGGTAC+AGG + chr1_1:16210031-16210050 Msa0010700:intron 50.0%
ACACAGGGAGATATGCAACG+AGG + chr1_1:16210192-16210211 Msa0010700:CDS 50.0%
CACAGGGAGATATGCAACGA+GGG + chr1_1:16210193-16210212 Msa0010700:CDS 50.0%
ACAGGGAGATATGCAACGAG+GGG + chr1_1:16210194-16210213 Msa0010700:CDS 50.0%
CACCCTATGATGCCTGATCT+TGG + chr1_1:16210843-16210862 Msa0010700:CDS 50.0%
GGCCAAGATCAGGCATCATA+GGG - chr1_1:16210848-16210867 None:intergenic 50.0%
TGGCCAAGATCAGGCATCAT+AGG - chr1_1:16210849-16210868 None:intergenic 50.0%
ATGATGCCTGATCTTGGCCA+AGG + chr1_1:16210849-16210868 Msa0010700:CDS 50.0%
CTAATGCACAACACCCTCCT+TGG - chr1_1:16210869-16210888 None:intergenic 50.0%
!!! AAGATGGGGTGGTTTTAGCG+AGG + chr1_1:16210889-16210908 Msa0010700:CDS 50.0%
GAGTAACCTTGGTCGATGGC+CGG - chr1_1:16204738-16204757 None:intergenic 55.0%
CGGAGAGTAACCTTGGTCGA+TGG - chr1_1:16204742-16204761 None:intergenic 55.0%
TGTCGGTCGGAGAGTAACCT+TGG - chr1_1:16204749-16204768 None:intergenic 55.0%
!! GCTGGCCTTACTACTGCCTT+AGG + chr1_1:16204849-16204868 Msa0010700:CDS 55.0%
GCCTTGGATGCTGTTGGTGT+TGG + chr1_1:16205074-16205093 Msa0010700:CDS 55.0%
ACTTGGAGTCCTACCACCCA+AGG + chr1_1:16206013-16206032 Msa0010700:CDS 55.0%
CACCCCATGACACCTGATCT+TGG + chr1_1:16206385-16206404 Msa0010700:CDS 55.0%
ACACCCCCTTGACCAAGATC+AGG - chr1_1:16206400-16206419 None:intergenic 55.0%
GTGGTGGCATTGCTTACGTG+TGG - chr1_1:16207785-16207804 None:intergenic 55.0%
! TGCTGGCCTCACAACATCCT+TGG + chr1_1:16208423-16208442 Msa0010700:CDS 55.0%
! GCTGGCCTCACAACATCCTT+GGG + chr1_1:16208424-16208443 Msa0010700:CDS 55.0%
!! TGGAAGGCGTTGGATGTCGT+TGG + chr1_1:16209428-16209447 Msa0010700:CDS 55.0%
GCGTTGGATGTCGTTGGTGT+TGG + chr1_1:16209434-16209453 Msa0010700:CDS 55.0%
!! GTTGTAGATGTTGGTGGCGG+AGG - chr1_1:16209466-16209485 None:intergenic 55.0%
!! GCCCGTGAAGTTCGGTGTAT+TGG + chr1_1:16209970-16209989 Msa0010700:intron 55.0%
!! GGTGCCACTAGGAAGCTCAT+TGG - chr1_1:16210022-16210041 None:intergenic 55.0%
TCTGTGGTGGCAAAGTGGCT+AGG + chr1_1:16210152-16210171 Msa0010700:CDS 55.0%
ATGCCTGATCTTGGCCAAGG+AGG + chr1_1:16210852-16210871 Msa0010700:CDS 55.0%
TGCCTGATCTTGGCCAAGGA+GGG + chr1_1:16210853-16210872 Msa0010700:CDS 55.0%
TACTCTCCGGCCATCGACCA+AGG + chr1_1:16204729-16204748 Msa0010700:CDS 60.0%
CACCCTCCTTGGCCAAGATC+AGG - chr1_1:16210858-16210877 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 16204702 16211178 16204702 ID=Msa0010700;Name=Msa0010700
chr1_1 mRNA 16204702 16211178 16204702 ID=Msa0010700-mRNA-1;Parent=Msa0010700;Name=Msa0010700-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.54|0.41|1|0.63|0.58|12|0|687
chr1_1 exon 16204702 16204880 16204702 ID=Msa0010700-mRNA-1:exon:5908;Parent=Msa0010700-mRNA-1
chr1_1 exon 16204986 16205132 16204986 ID=Msa0010700-mRNA-1:exon:5909;Parent=Msa0010700-mRNA-1
chr1_1 exon 16205275 16205343 16205275 ID=Msa0010700-mRNA-1:exon:5910;Parent=Msa0010700-mRNA-1
chr1_1 exon 16205499 16205655 16205499 ID=Msa0010700-mRNA-1:exon:5911;Parent=Msa0010700-mRNA-1
chr1_1 exon 16205806 16206034 16205806 ID=Msa0010700-mRNA-1:exon:5912;Parent=Msa0010700-mRNA-1
chr1_1 exon 16206182 16206415 16206182 ID=Msa0010700-mRNA-1:exon:5913;Parent=Msa0010700-mRNA-1
chr1_1 exon 16206595 16206699 16206595 ID=Msa0010700-mRNA-1:exon:5914;Parent=Msa0010700-mRNA-1
chr1_1 exon 16208413 16208455 16208413 ID=Msa0010700-mRNA-1:exon:5915;Parent=Msa0010700-mRNA-1
chr1_1 exon 16209393 16209492 16209393 ID=Msa0010700-mRNA-1:exon:5916;Parent=Msa0010700-mRNA-1
chr1_1 exon 16209720 16209791 16209720 ID=Msa0010700-mRNA-1:exon:5917;Parent=Msa0010700-mRNA-1
chr1_1 exon 16210068 16210314 16210068 ID=Msa0010700-mRNA-1:exon:5918;Parent=Msa0010700-mRNA-1
chr1_1 exon 16210697 16211178 16210697 ID=Msa0010700-mRNA-1:exon:5919;Parent=Msa0010700-mRNA-1
chr1_1 CDS 16204702 16204880 16204702 ID=Msa0010700-mRNA-1:cds;Parent=Msa0010700-mRNA-1
chr1_1 CDS 16204986 16205132 16204986 ID=Msa0010700-mRNA-1:cds;Parent=Msa0010700-mRNA-1
chr1_1 CDS 16205275 16205343 16205275 ID=Msa0010700-mRNA-1:cds;Parent=Msa0010700-mRNA-1
chr1_1 CDS 16205499 16205655 16205499 ID=Msa0010700-mRNA-1:cds;Parent=Msa0010700-mRNA-1
chr1_1 CDS 16205806 16206034 16205806 ID=Msa0010700-mRNA-1:cds;Parent=Msa0010700-mRNA-1
chr1_1 CDS 16206182 16206415 16206182 ID=Msa0010700-mRNA-1:cds;Parent=Msa0010700-mRNA-1
chr1_1 CDS 16206595 16206699 16206595 ID=Msa0010700-mRNA-1:cds;Parent=Msa0010700-mRNA-1
chr1_1 CDS 16208413 16208455 16208413 ID=Msa0010700-mRNA-1:cds;Parent=Msa0010700-mRNA-1
chr1_1 CDS 16209393 16209492 16209393 ID=Msa0010700-mRNA-1:cds;Parent=Msa0010700-mRNA-1
chr1_1 CDS 16209720 16209791 16209720 ID=Msa0010700-mRNA-1:cds;Parent=Msa0010700-mRNA-1
chr1_1 CDS 16210068 16210314 16210068 ID=Msa0010700-mRNA-1:cds;Parent=Msa0010700-mRNA-1
chr1_1 CDS 16210697 16211178 16210697 ID=Msa0010700-mRNA-1:cds;Parent=Msa0010700-mRNA-1
Gene Sequence

>Msa0010700

AAGAGCTGTTATAACTGGACACAAGGTTACTCTCCGGCCATCGACCAAGGTTACTCTCCGACCGACATATCATATATTTTAAATTTGTTTGTAATGGAAACAACAAAAATAGTTGAAGAAGATATTGTGATTGTGGGAGCTGGAATTGCTGGCCTTACTACTGCCTTAGGACTTCACAGGTTGGGTGTAAGAAGTTTGGTATTGGAATCTTCAGATAGTTTGAGAGTAACTGGATTTGCTTTAGGAATATGGGAAAATGCTTGGAAAGCCTTGGATGCTGTTGGTGTTGGAGATATCCTCCGCCACAAACATATACATCTTTATGGGAATGTGACTACTTCTTTGATTACAGGACAGCAATTAGCAACTTTGTCTTTCAGGGACAAAGGAAAGCTTGAACTACGGAGTGTTAGAAGGAAGTTATTGTTGGAAGCCCTTGCCAATGAACTTCCAAATGACACCATTAGGTACATGTCAAAAGTTGTTGCTATTGAGGAATCTGGATTCTTTAAAATACTACATCTTGTTGATGGAACAACCATCAAAACCAAGGTATTGATAGGATGTGATGGAATCAACTCTGTGGTTGCAAAGTGGTTAGGCTTCAAGGAGGCCATTTATACAGGTAGATATGGAATTAGGGGTTTTGCAGAGTTGGAAAACAATCACAGTTTTGAGCCTATGCTTATGCAGTTCTATGGCAAAGGTTTTAGAGTTGGAGTTGTTCCTTGTCATGAGAAAGGTGTTTACTGGTTTTTCACTTGGAGTCCTACCACCCAAGATAAGGAGCTAATGGAGAACCCTGTTAAACTGAAGCAATATGTGTTAAACAAGCTAGAGAATATGCCAAGTAATGTTAGATCTATCATAGAAAAAACAGAGATAGATGCTTTCCATTCAGCTCCATTAAGATATAGACATCCTTGGGAGCTCATAATGGGAAATATTAGCAAAGGAAATGTTTGTGTTGCTGGTGATGCTTTACACCCCATGACACCTGATCTTGGTCAAGGGGGTGTTATTCAGCAGGCTGATTCAAAATTGGTTACATTTTTTAGGGACAAAATTTTGGCTCCATTACTAGCTGGTCAACTATTCAAGAAGTCTGGTTTTGATTGTGGAGCTGGAATTGCTGGCCTCACAACATCCTTGGGACTTCACAGTCAGTGGATTTGCTTTAACGGTATGGGAAAATGCTTGGAAGGCGTTGGATGTCGTTGGTGTTGGAGACATCCTCCGCCACCAACATCTACAACTTCATGGGAATGTGACTACTTCTTTGGTTATGGGGCAACAAACATCATCTACGTCTTTCATAGACAACAAAGGAAAGTAGAATCTGGCTTCTCTAAAATATTACATCTTGTTGATGGAACAACCATCAAAACCAAGGTGTTGATTGGGTGTGATGGAGTAAACTCTGTGGTGGCAAAGTGGCTAGGCTTCAACGAAGCCTCATACACAGGGAGATATGCAACGAGGGGTTATGCAGAGTTGAAGACCACTCACAAGCTTGAACCAATGTTCATGCAGTACTTTGGCAAAGGTTTTAGGGCTGGAGCTATTCCATGTGATGACAAGGAGAAGATGCCAAATGATGTTAAACATTTCATAGAAAACACAGAATTAGATGCATTTCAATCAGTTCCATTGAGACATAGACATCCTTGGGAGCTAATAATGGGAAATATTAGTAAAGGCAATGTTTGTGTTGCTGGAGATGCTTTACACCCTATGATGCCTGATCTTGGCCAAGGAGGGTGTTGTGCATTAGAAGATGGGGTGGTTTTAGCGAGGTGTTTAGCTGAGGCTTTTTTGAAGAAACCAAAGGAAGAAGAAGAAGAAGAATACAAAAGGATTGAGGAAGGTTTCAAGAAATATGCAAAGGAGAGAAGATGGAGATGCATTGATCTCATTATTGCAAATTATTTTGTTGGTTCTATTCAGGAAAGTGGTTCAAAATTGGTTAACTTCTTCAGGGATAAAATTTTGGCTACATACTTAGCTAGTCAGTTATTGAAGAAATCTAATTTTGATTGTGGTAAACTAAAAAATAGCCCTTAA
Protein sequence

>Msa0010700

KSCYNWTQGYSPAIDQGYSPTDISYILNLFVMETTKIVEEDIVIVGAGIAGLTTALGLHRLGVRSLVLESSDSLRVTGFALGIWENAWKALDAVGVGDILRHKHIHLYGNVTTSLITGQQLATLSFRDKGKLELRSVRRKLLLEALANELPNDTIRYMSKVVAIEESGFFKILHLVDGTTIKTKVLIGCDGINSVVAKWLGFKEAIYTGRYGIRGFAELENNHSFEPMLMQFYGKGFRVGVVPCHEKGVYWFFTWSPTTQDKELMENPVKLKQYVLNKLENMPSNVRSIIEKTEIDAFHSAPLRYRHPWELIMGNISKGNVCVAGDALHPMTPDLGQGGVIQQADSKLVTFFRDKILAPLLAGQLFKKSGFDCGAGIAGLTTSLGLHSQWICFNGMGKCLEGVGCRWCWRHPPPPTSTTSWECDYFFGYGATNIIYVFHRQQRKVESGFSKILHLVDGTTIKTKVLIGCDGVNSVVAKWLGFNEASYTGRYATRGYAELKTTHKLEPMFMQYFGKGFRAGAIPCDDKEKMPNDVKHFIENTELDAFQSVPLRHRHPWELIMGNISKGNVCVAGDALHPMMPDLGQGGCCALEDGVVLARCLAEAFLKKPKEEEEEEYKRIEEGFKKYAKERRWRCIDLIIANYFVGSIQESGSKLVNFFRDKILATYLASQLLKKSNFDCGKLKNSP*