AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1410310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1410310 MtrunA17_Chr1g0211181 91.337 404 19 3 32 422 1 401 0.0 729
Msa1410310 MtrunA17_Chr1g0211181 60.152 394 75 5 422 739 16 403 2.36e-150 444
Msa1410310 MtrunA17_Chr1g0197161 72.953 403 89 3 37 422 4 403 0.0 584
Msa1410310 MtrunA17_Chr1g0197161 64.160 399 58 5 422 740 13 406 2.03e-167 488
Msa1410310 MtrunA17_Chr1g0211141 76.382 398 78 3 38 422 1 395 0.0 580
Msa1410310 MtrunA17_Chr1g0211141 69.620 395 39 4 422 740 9 398 2.38e-177 513
Msa1410310 MtrunA17_Chr1g0211171 74.265 408 86 5 32 422 1 406 0.0 560
Msa1410310 MtrunA17_Chr1g0211171 75.810 401 17 4 422 743 13 412 0.0 555
Msa1410310 MtrunA17_Chr1g0211151 71.358 405 100 4 32 422 1 403 6.42e-179 517
Msa1410310 MtrunA17_Chr1g0211151 61.616 396 73 4 422 740 13 406 1.20e-148 439
Msa1410310 MtrunA17_Chr5g0399671 41.689 379 213 5 33 405 37 413 3.05e-88 284
Msa1410310 MtrunA17_Chr5g0399671 32.086 374 169 6 422 720 50 413 5.24e-49 178
Msa1410310 MtrunA17_Chr5g0399661 39.186 393 228 7 35 419 35 424 1.71e-83 271
Msa1410310 MtrunA17_Chr5g0399661 30.051 396 189 5 422 740 46 430 1.68e-47 174
Msa1410310 MtrunA17_Chr4g0018001 31.122 196 125 3 214 399 18 213 1.78e-26 108
Msa1410310 MtrunA17_Chr4g0018001 33.133 166 97 3 578 739 82 237 3.05e-22 96.7
Msa1410310 MtrunA17_Chr4g0017991 40.397 151 68 2 39 187 6 136 7.21e-24 99.8
Msa1410310 MtrunA17_Chr4g0017981 34.375 160 97 3 581 739 5 157 2.53e-22 94.4
Msa1410310 MtrunA17_Chr4g0017981 28.662 157 102 3 276 423 1 156 2.78e-14 71.2
Msa1410310 MtrunA17_Chr4g0017951 56.944 72 31 0 38 109 5 76 9.48e-19 81.3
Msa1410310 MtrunA17_Chr8g0375081 25.722 381 231 12 42 389 83 444 8.38e-14 75.1
Msa1410310 MtrunA17_Chr5g0402211 26.810 373 237 11 42 389 78 439 1.23e-13 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1410310 AT5G05320.1 51.508 398 175 3 40 422 7 401 1.20e-137 412
Msa1410310 AT5G05320.1 41.730 393 156 5 422 741 13 405 2.60e-94 299
Msa1410310 AT4G38540.1 53.634 399 167 3 41 423 8 404 4.96e-131 395
Msa1410310 AT4G38540.1 43.766 393 146 5 422 739 13 405 8.19e-95 301
Msa1410310 AT2G35660.1 37.879 396 225 8 39 421 44 431 2.62e-76 253
Msa1410310 AT2G35660.1 30.303 396 186 8 422 739 51 434 4.17e-43 162
Msa1410310 AT2G29720.1 35.635 362 226 5 52 408 55 414 1.04e-67 229
Msa1410310 AT2G29720.1 30.286 350 169 6 435 721 75 412 2.49e-38 148
Msa1410310 AT4G15760.1 30.946 391 243 5 50 422 39 420 2.13e-56 199
Msa1410310 AT4G15760.1 26.943 386 208 4 426 739 39 422 6.78e-39 150
Msa1410310 AT4G15760.2 31.514 403 237 8 50 422 39 432 2.07e-55 196
Msa1410310 AT4G15760.2 26.131 398 208 4 426 739 39 434 4.76e-37 144
Msa1410310 AT2G35660.2 35.016 317 186 7 118 421 8 317 6.50e-51 181
Msa1410310 AT2G35660.2 32.090 268 138 4 505 739 64 320 4.21e-34 133
Msa1410310 AT2G35660.3 35.016 317 186 7 118 421 8 317 6.50e-51 181
Msa1410310 AT2G35660.3 32.090 268 138 4 505 739 64 320 4.21e-34 133
Msa1410310 AT4G15765.1 31.104 299 166 5 39 335 3 263 4.54e-36 137
Msa1410310 AT4G15765.2 30.120 166 116 0 170 335 25 190 2.04e-23 99.0
Msa1410310 AT4G15765.2 27.273 165 88 2 504 636 26 190 9.45e-13 68.2
Msa1410310 AT4G15765.5 30.120 166 116 0 170 335 25 190 2.04e-23 99.0
Msa1410310 AT4G15765.5 27.273 165 88 2 504 636 26 190 9.45e-13 68.2
Msa1410310 AT4G15765.3 30.120 166 116 0 170 335 25 190 2.04e-23 99.0
Msa1410310 AT4G15765.3 27.273 165 88 2 504 636 26 190 9.45e-13 68.2
Msa1410310 AT4G15765.4 30.120 166 116 0 170 335 25 190 2.04e-23 99.0
Msa1410310 AT4G15765.4 27.273 165 88 2 504 636 26 190 9.45e-13 68.2

Find 186 sgRNAs with CRISPR-Local

Find 452 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCAGGGATAAAATTT+TGG 0.116678 tig0023648:+66401 Msa1410310:CDS
CACAAACATATACATCTTTA+TGG 0.152913 tig0023648:+60414 Msa1410310:CDS
CTGGATTTGCTTTAGGAATA+TGG 0.163806 tig0023648:+60340 Msa1410310:CDS
ATACAGGTAGATATGGAATT+AGG 0.167774 tig0023648:+61176 Msa1410310:CDS
CAAAATTGGTTAACTTCTTC+AGG 0.188159 tig0023648:+66388 Msa1410310:CDS
TCCATATCTACCTGTATAAA+TGG 0.215538 tig0023648:-61170 None:intergenic
AATTAGCAACTTTGTCTTTC+AGG 0.225902 tig0023648:+60610 Msa1410310:CDS
TGTGACTACTTCTTTGGTTA+TGG 0.241431 tig0023648:+65030 Msa1410310:CDS
ACATATTGCTTCAGTTTAAC+AGG 0.258163 tig0023648:-61505 None:intergenic
GTGACTACTTCTTTGATTAC+AGG 0.261068 tig0023648:+60582 Msa1410310:CDS
TCCTCCTCTTCTTCTTCCTT+TGG 0.266684 tig0023648:-61784 None:intergenic
TCAGGAAAGTGGTTCAAAAT+TGG 0.273076 tig0023648:+66374 Msa1410310:CDS
TCAGATAGTTTGAGAGTAAC+TGG 0.275521 tig0023648:+60321 Msa1410310:CDS
TACAGGTAGATATGGAATTA+GGG 0.275824 tig0023648:+61177 Msa1410310:CDS
CAGGAATGTGACTACTTCTT+TGG 0.280000 tig0023648:+65024 Msa1410310:intron
TCAGCAGGCTGATTCAAAAT+TGG 0.284136 tig0023648:+61906 Msa1410310:CDS
CAAGGATGTCTATATCTTAA+TGG 0.290619 tig0023648:-61607 None:intergenic
GTCATGAGAAAGGTGTTTAC+TGG 0.295235 tig0023648:+61287 Msa1410310:CDS
AAAATACTACATCTTGTTGA+TGG 0.306705 tig0023648:+60917 Msa1410310:CDS
ATGAAATGTTTAACATCATT+TGG 0.309078 tig0023648:-66012 None:intergenic
GTTGTTGCTATTGAGGAATC+TGG 0.311479 tig0023648:+60887 Msa1410310:CDS
ATTACTACAGCTTATATTGC+AGG 0.323766 tig0023648:+61877 Msa1410310:CDS
AAAGGCAATGTTTGTGTTGC+TGG 0.327124 tig0023648:+66117 Msa1410310:CDS
ACATCCTTGGGAGCTAATAA+TGG 0.330779 tig0023648:+66083 Msa1410310:CDS
CAGGTTGGGTGTAAGAAGTT+TGG 0.334231 tig0023648:+60287 Msa1410310:intron
GTGACTACTTCTTTGGTTAT+GGG 0.339346 tig0023648:+65031 Msa1410310:CDS
AAAATATTACATCTTGTTGA+TGG 0.342630 tig0023648:+65390 Msa1410310:CDS
AGAGTAACTGGATTTGCTTT+AGG 0.343106 tig0023648:+60333 Msa1410310:CDS
GTAATTGAAAAGGTATTGAT+AGG 0.347467 tig0023648:+61097 Msa1410310:intron
AAAGGAAATGTTTGTGTTGC+TGG 0.349120 tig0023648:+61655 Msa1410310:CDS
ATTGTGGGAGCTGGAATTGC+TGG 0.349361 tig0023648:+60135 Msa1410310:CDS
GCCATTTATACAGGTAGATA+TGG 0.356014 tig0023648:+61169 Msa1410310:CDS
GTTGTTGCTATTCAGGAATC+TGG 0.365962 tig0023648:+65360 Msa1410310:intron
TGGCCAAGATCAGGCATCAT+AGG 0.366278 tig0023648:-66153 None:intergenic
ATTGTAGGAGCTGGAATTGC+TGG 0.368049 tig0023648:+63711 Msa1410310:intron
AAAAGAAGAGCTGTTATAAC+TGG 0.370491 tig0023648:+60001 None:intergenic
ACATCCTTGGGAGCTCATAA+TGG 0.372312 tig0023648:+61621 Msa1410310:CDS
GTCAAAAGTTGTTGCTATTG+AGG 0.373545 tig0023648:+60880 Msa1410310:CDS
TGGATTTGCTTTAGGAATAT+GGG 0.376418 tig0023648:+60341 Msa1410310:CDS
CACCCTATGATGCCTGATCT+TGG 0.380927 tig0023648:+66150 Msa1410310:CDS
TTCAAGGAGGCCATTTATAC+AGG 0.388572 tig0023648:+61160 Msa1410310:CDS
ATCAAAACCAAGGTGTTGAT+TGG 0.389792 tig0023648:+65420 Msa1410310:CDS
TGCAAAGTGGTTAGGCTTCA+AGG 0.404806 tig0023648:+61144 Msa1410310:CDS
CACCCCATGACACCTGATCT+TGG 0.406255 tig0023648:+61688 Msa1410310:CDS
CACCAACATCTACAACTTCA+TGG 0.407357 tig0023648:+64777 Msa1410310:CDS
GGGTGTAAGAAGTTTGGTAT+TGG 0.407891 tig0023648:+60293 Msa1410310:CDS
GGTGTCATTTGGAAGTTCAT+TGG 0.408951 tig0023648:-60846 None:intergenic
TGTTAGAAGGAAGTTATTGT+TGG 0.411104 tig0023648:+60814 Msa1410310:CDS
AATATGCAAAGGAGAGAAGA+TGG 0.415258 tig0023648:+66307 Msa1410310:CDS
CCTATGCTTATGCAGTTCTA+TGG 0.418184 tig0023648:+61235 Msa1410310:CDS
TGCTGGCCTCACAACATCCT+TGG 0.420337 tig0023648:+63728 Msa1410310:CDS
ACAAACATATACATCTTTAT+GGG 0.420565 tig0023648:+60415 Msa1410310:CDS
GTGGATTTGCTTTAACGGTA+TGG 0.422983 tig0023648:+64703 Msa1410310:CDS
GATGTATATGTTTGTGGCGG+AGG 0.427623 tig0023648:-60407 None:intergenic
GCTGGCCTTACTACTGCCTT+AGG 0.433010 tig0023648:+60153 Msa1410310:CDS
CATCCTTGGGAGCTAATAAT+GGG 0.433653 tig0023648:+66084 Msa1410310:CDS
TGTTGCAGATAAGGAGCTAA+TGG 0.435214 tig0023648:+61477 Msa1410310:intron
ATGATAGATCTAACATTACT+TGG 0.440226 tig0023648:-61550 None:intergenic
TTCAACGAAGCCTCATACAC+AGG 0.443232 tig0023648:+65483 Msa1410310:CDS
TCTGTGGTTGCAAAGTGGTT+AGG 0.443344 tig0023648:+61136 Msa1410310:CDS
ATTAGCAACTTTGTCTTTCA+GGG 0.445209 tig0023648:+60611 Msa1410310:CDS
GGTCAACTATTCAAGAAGTC+TGG 0.446062 tig0023648:+61970 Msa1410310:CDS
CATCCTTGGGAGCTCATAAT+GGG 0.446436 tig0023648:+61622 Msa1410310:CDS
AGTCAGTGGATTTGCTTTAA+CGG 0.446543 tig0023648:+64698 Msa1410310:CDS
AAGAAGAAGAAGAATACAAA+AGG 0.451857 tig0023648:+66265 Msa1410310:CDS
TGCATATCTCCCTGTGTATG+AGG 0.452906 tig0023648:-65493 None:intergenic
TATTGCAGGTGTTATTCAGC+AGG 0.452920 tig0023648:+61891 Msa1410310:CDS
AAAATTGGTTAACTTCTTCA+GGG 0.455885 tig0023648:+66389 Msa1410310:CDS
CCAATGTTCATGCAGTACTT+TGG 0.458036 tig0023648:+65558 Msa1410310:CDS
TAGGAATATGGGAAAATGCT+TGG 0.459941 tig0023648:+60352 Msa1410310:CDS
CATTGAGACATAGACATCCT+TGG 0.463494 tig0023648:+66070 Msa1410310:CDS
AACTTCCAAATGACACCATT+AGG 0.465917 tig0023648:+60852 Msa1410310:CDS
CATAAAGATGTATATGTTTG+TGG 0.466768 tig0023648:-60413 None:intergenic
GCTGGCCTCACAACATCCTT+GGG 0.467311 tig0023648:+63729 Msa1410310:CDS
CACCCTCCTTGGCCAAGATC+AGG 0.471352 tig0023648:-66162 None:intergenic
GTGAACTACGGAGTGTTAGA+AGG 0.471668 tig0023648:+60801 Msa1410310:intron
GTTGTAGATGTTGGTGGCGG+AGG 0.473299 tig0023648:-64770 None:intergenic
CATTAAGATATAGACATCCT+TGG 0.475442 tig0023648:+61608 Msa1410310:CDS
ATTGAGACATAGACATCCTT+GGG 0.475914 tig0023648:+66071 Msa1410310:CDS
TGGATTTGCTTTAACGGTAT+GGG 0.476250 tig0023648:+64704 Msa1410310:CDS
TAACGGTATGGGAAAATGCT+TGG 0.477745 tig0023648:+64715 Msa1410310:CDS
GGGTGTTGTGCATTAGAAGA+TGG 0.480761 tig0023648:+66180 Msa1410310:CDS
CTAATGCACAACACCCTCCT+TGG 0.481132 tig0023648:-66173 None:intergenic
GGTGTTGTGCATTAGAAGAT+GGG 0.481605 tig0023648:+66181 Msa1410310:CDS
AATATGCAAATGAAAGAAGA+TGG 0.488104 tig0023648:+61839 Msa1410310:CDS
TGAAGAAGATATTGTGATTG+TGG 0.490132 tig0023648:+60119 Msa1410310:CDS
ATTAAGATATAGACATCCTT+GGG 0.496859 tig0023648:+61609 Msa1410310:CDS
GTTGGTTCTATTCAGGAAAG+TGG 0.496865 tig0023648:+66363 Msa1410310:CDS
ACCAAAGGAAGAAGAAGAGG+AGG 0.497219 tig0023648:+61783 Msa1410310:CDS
GCCTTGGATGCTGTTGGTGT+TGG 0.497974 tig0023648:+60378 Msa1410310:CDS
ATGTACCTAATGGTGTCATT+TGG 0.503089 tig0023648:-60857 None:intergenic
CAAGGATGTCTATGTCTCAA+TGG 0.503296 tig0023648:-66069 None:intergenic
TGACCAAGATCAGGTGTCAT+GGG 0.504386 tig0023648:-61691 None:intergenic
TCAAAACCAAGGTGTTGATT+GGG 0.505761 tig0023648:+65421 Msa1410310:CDS
GGAGAAATACAAAAGAATTG+AGG 0.506282 tig0023648:+61804 Msa1410310:CDS
AGAAGAATACAAAAGGATTG+AGG 0.508059 tig0023648:+66272 Msa1410310:CDS
AAAACCAAAGGAAGAAGAAG+AGG 0.509176 tig0023648:+61780 Msa1410310:CDS
TTTCCCATTATTAGCTCCCA+AGG 0.512250 tig0023648:-66087 None:intergenic
CAACATCCTTGGGACTTCAC+AGG 0.512542 tig0023648:+63739 Msa1410310:CDS
CTTATGCAGTTCTATGGCAA+AGG 0.512905 tig0023648:+61241 Msa1410310:CDS
ATTTGGAAGTTCATTGGCAA+GGG 0.513244 tig0023648:-60840 None:intergenic
TATATCTTAATGGAGCTGAA+TGG 0.515218 tig0023648:-61597 None:intergenic
TGGAAAGCCTTGGATGCTGT+TGG 0.518048 tig0023648:+60372 Msa1410310:CDS
GATATTGTGATTGTGGGAGC+TGG 0.518765 tig0023648:+60126 Msa1410310:CDS
CATTTGGAAGTTCATTGGCA+AGG 0.521765 tig0023648:-60841 None:intergenic
CCAAAGTACTGCATGAACAT+TGG 0.523201 tig0023648:-65558 None:intergenic
GGAAAATGCTTGGAAAGCCT+TGG 0.529652 tig0023648:+60362 Msa1410310:CDS
GAATACAAAAGGATTGAGGA+AGG 0.529888 tig0023648:+66276 Msa1410310:CDS
ATAATGGGAAATATTAGTAA+AGG 0.530399 tig0023648:+66099 Msa1410310:CDS
TCAGATAGTTTGAGAGTCAG+TGG 0.533319 tig0023648:+64684 Msa1410310:intron
GCGTTGGATGTCGTTGGTGT+TGG 0.533588 tig0023648:+64741 Msa1410310:CDS
AGGAATTGACCTTGGGTGGT+AGG 0.536985 tig0023648:-61325 None:intergenic
TGACTACTTCTTTGGTTATG+GGG 0.537353 tig0023648:+65032 Msa1410310:CDS
TTGACCAAGATCAGGTGTCA+TGG 0.539777 tig0023648:-61692 None:intergenic
TTCATGCAGTACTTTGGCAA+AGG 0.540273 tig0023648:+65564 Msa1410310:CDS
GAAGAAGATATTGTGATTGT+GGG 0.542234 tig0023648:+60120 Msa1410310:CDS
GAGTAACCTTGGTCGATGGC+CGG 0.543162 tig0023648:-60039 None:intergenic
TGGAAGGCGTTGGATGTCGT+TGG 0.546019 tig0023648:+64735 Msa1410310:CDS
GGCCAAGATCAGGCATCATA+GGG 0.547689 tig0023648:-66152 None:intergenic
GGAAAATGCTTGGAAGGCGT+TGG 0.549027 tig0023648:+64725 Msa1410310:CDS
GTGGTACCTGTGAAGTCCTA+AGG 0.549275 tig0023648:-60169 None:intergenic
AAATACAAAAGAATTGAGGA+AGG 0.551011 tig0023648:+61808 Msa1410310:CDS
GTTGTTCCTTGTCATGAGAA+AGG 0.552354 tig0023648:+61277 Msa1410310:CDS
ATTTAAAATATATGATATGT+CGG 0.554331 tig0023648:-60067 None:intergenic
TTGTGCATTAGAAGATGGGG+TGG 0.557089 tig0023648:+66185 Msa1410310:CDS
TCCAACACCAACAGCATCCA+AGG 0.559236 tig0023648:-60379 None:intergenic
ACCAACATCTACAACTTCAT+GGG 0.560855 tig0023648:+64778 Msa1410310:CDS
AATAGTTGACCAGCTAGTAA+TGG 0.561620 tig0023648:-61958 None:intergenic
TTTCCCATTATGAGCTCCCA+AGG 0.564495 tig0023648:-61625 None:intergenic
AAAATATATGATATGTCGGT+CGG 0.567189 tig0023648:-60063 None:intergenic
GAAGTCCTAAGGCAGTAGTA+AGG 0.567536 tig0023648:-60158 None:intergenic
ATGACACCTGATCTTGGTCA+AGG 0.568341 tig0023648:+61694 Msa1410310:CDS
ACAGGTAGATATGGAATTAG+GGG 0.569603 tig0023648:+61178 Msa1410310:CDS
ACTTTGTCTTTCAGGGACAA+AGG 0.573372 tig0023648:+60618 Msa1410310:CDS
TGACACCTGATCTTGGTCAA+GGG 0.574223 tig0023648:+61695 Msa1410310:CDS
CTACTGCCTTAGGACTTCAC+AGG 0.574990 tig0023648:+60163 Msa1410310:CDS
TCTGTGGTGGCAAAGTGGCT+AGG 0.577400 tig0023648:+65459 Msa1410310:CDS
ATGAGTTATGTAGTGAACTA+CGG 0.578085 tig0023648:+60789 Msa1410310:intron
ATCACACCCAATCAACACCT+TGG 0.578417 tig0023648:-65427 None:intergenic
CCATAGAACTGCATAAGCAT+AGG 0.583126 tig0023648:-61235 None:intergenic
AAGGTATTGATAGGATGTGA+TGG 0.586088 tig0023648:+61106 Msa1410310:intron
TACTCTCCGGCCATCGACCA+AGG 0.589723 tig0023648:+60033 Msa1410310:CDS
TTTAGCGAGGTGTTTAGCTG+AGG 0.590331 tig0023648:+66209 Msa1410310:CDS
CGGAGAGTAACCTTGGTCGA+TGG 0.590965 tig0023648:-60043 None:intergenic
AAGGTGTTGATTGGGTGTGA+TGG 0.594090 tig0023648:+65429 Msa1410310:CDS
CATGAAGTTGTAGATGTTGG+TGG 0.595074 tig0023648:-64776 None:intergenic
ATGATGCCTGATCTTGGCCA+AGG 0.600478 tig0023648:+66156 Msa1410310:CDS
TGCCTGATCTTGGCCAAGGA+GGG 0.602300 tig0023648:+66160 Msa1410310:CDS
GACACCTGATCTTGGTCAAG+GGG 0.603675 tig0023648:+61696 Msa1410310:CDS
ATAATGGGAAATATTAGCAA+AGG 0.604077 tig0023648:+61637 Msa1410310:CDS
CATATTGCTTCAGTTTAACA+GGG 0.606307 tig0023648:-61504 None:intergenic
TAAACACCCTTGTCATCACA+TGG 0.608128 tig0023648:-65606 None:intergenic
ACCCATGAAGTTGTAGATGT+TGG 0.609291 tig0023648:-64779 None:intergenic
GGTATGGGAAAATGCTTGGA+AGG 0.611682 tig0023648:+64719 Msa1410310:CDS
CACAGGGAGATATGCAACGA+GGG 0.613113 tig0023648:+65500 Msa1410310:CDS
TGTCGGTCGGAGAGTAACCT+TGG 0.613529 tig0023648:-60050 None:intergenic
ACTTGGAGTCCTACCACCCA+AGG 0.615526 tig0023648:+61316 Msa1410310:CDS
GTGTTGTGCATTAGAAGATG+GGG 0.626627 tig0023648:+66182 Msa1410310:CDS
AGCTGTTATAACTGGACACA+AGG 0.629837 tig0023648:+60009 Msa1410310:CDS
AGAGTACCTGTGAAGTCCCA+AGG 0.634653 tig0023648:-63745 None:intergenic
CTGGACACAAGGTTACTCTC+CGG 0.636373 tig0023648:+60020 Msa1410310:CDS
AATACAAAAGAATTGAGGAA+GGG 0.636762 tig0023648:+61809 Msa1410310:CDS
GACCAAGATCAGGTGTCATG+GGG 0.638652 tig0023648:-61690 None:intergenic
TAAACTCTGTGGTGGCAAAG+TGG 0.638925 tig0023648:+65454 Msa1410310:CDS
AGCTATTCCATGTGATGACA+AGG 0.639989 tig0023648:+65599 Msa1410310:CDS
TAAACACCTTTCTCATGACA+AGG 0.641474 tig0023648:-61283 None:intergenic
CATTGGTTCAAGCTTGTGAG+TGG 0.645311 tig0023648:-65541 None:intergenic
CACCTGATCTTGGTCAAGGG+GGG 0.646163 tig0023648:+61698 Msa1410310:CDS
TCAACGAAGCCTCATACACA+GGG 0.655710 tig0023648:+65484 Msa1410310:CDS
AGGTTTCAAGAAATATGCAA+AGG 0.658615 tig0023648:+66296 Msa1410310:CDS
TCAACTCTGTGGTTGCAAAG+TGG 0.661332 tig0023648:+61131 Msa1410310:CDS
ACACCTGATCTTGGTCAAGG+GGG 0.667732 tig0023648:+61697 Msa1410310:CDS
GAAGTTGTAGATGTTGGTGG+CGG 0.672083 tig0023648:-64773 None:intergenic
ATGCCTGATCTTGGCCAAGG+AGG 0.673847 tig0023648:+66159 Msa1410310:CDS
AAAGATGTATATGTTTGTGG+CGG 0.679762 tig0023648:-60410 None:intergenic
ACGTCTTTCATAGACAACAA+AGG 0.684092 tig0023648:+65070 Msa1410310:CDS
TGATGGAGTAAACTCTGTGG+TGG 0.689773 tig0023648:+65446 Msa1410310:CDS
TGGAACAACCATCAAAACCA+AGG 0.693752 tig0023648:+60937 Msa1410310:CDS
TGGAACAACCATCAAAACCA+AGG 0.703968 tig0023648:+65410 Msa1410310:CDS
ACAGGGAGATATGCAACGAG+GGG 0.719732 tig0023648:+65501 Msa1410310:CDS
GTGTGATGGAGTAAACTCTG+TGG 0.740999 tig0023648:+65443 Msa1410310:CDS
GCTATTCCATGTGATGACAA+GGG 0.761661 tig0023648:+65600 Msa1410310:CDS
GAAGTCCCAAGGATGTTGTG+AGG 0.766407 tig0023648:-63734 None:intergenic
ACACAGGGAGATATGCAACG+AGG 0.767390 tig0023648:+65499 Msa1410310:CDS
ATGTGATGGAATCAACTCTG+TGG 0.777353 tig0023648:+61120 Msa1410310:CDS
AAAGTGGTTAGGCTTCAAGG+AGG 0.779828 tig0023648:+61147 Msa1410310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAAAATATATGATATGT+CGG - tig0023648:60070-60089 None:intergenic 10.0%
!!! TATTTTAAATTTGTTTGTAA+TGG + tig0023648:60080-60099 Msa1410310:CDS 10.0%
!!! AATATAATTTGTAATTGAAA+AGG + tig0023648:61087-61106 Msa1410310:intron 10.0%
!!! AAGTTTGTATTAATTTTTTA+AGG - tig0023648:62489-62508 None:intergenic 10.0%
!! AAATAATAATAAAAACTCAA+AGG + tig0023648:62802-62821 Msa1410310:intron 10.0%
!! TATTCTAATAAAAACTTAAA+AGG + tig0023648:63636-63655 Msa1410310:intron 10.0%
!!! TCTAATTAATTTTAAATAGA+AGG + tig0023648:63887-63906 Msa1410310:intron 10.0%
!!! CTAATTAATTTTAAATAGAA+GGG + tig0023648:63888-63907 Msa1410310:intron 10.0%
!!! CATTTTTATAAGTATTATTA+AGG - tig0023648:64072-64091 None:intergenic 10.0%
!!! TTTTCATTTATATAAATATG+GGG - tig0023648:64207-64226 None:intergenic 10.0%
!!! GATTTTCATTTATATAAATA+TGG - tig0023648:64209-64228 None:intergenic 10.0%
!!! TAATTTGATTTTTAAAACAT+TGG - tig0023648:65714-65733 None:intergenic 10.0%
!!! TTATTTTCTAGATTAATAAT+CGG - tig0023648:65898-65917 None:intergenic 10.0%
!!! AAAATTGGTTACATTTTTTA+GGG + tig0023648:61921-61940 Msa1410310:CDS 15.0%
!!! AATAATATAAAGTATTACGT+GGG - tig0023648:62634-62653 None:intergenic 15.0%
!!! AAATAATATAAAGTATTACG+TGG - tig0023648:62635-62654 None:intergenic 15.0%
!!! CTTATTTTTTTAATCAAAGT+TGG - tig0023648:63156-63175 None:intergenic 15.0%
!! TAAATATCTTGAAGTTTAAT+TGG - tig0023648:63348-63367 None:intergenic 15.0%
!! AGAAGTTTCTATATATAATT+GGG - tig0023648:63548-63567 None:intergenic 15.0%
!! TAGAATAGAAATATATAGAA+TGG - tig0023648:63623-63642 None:intergenic 15.0%
!!! CTTTTTTGTTTCTTTTTTTA+AGG - tig0023648:63941-63960 None:intergenic 15.0%
!! CTTAAAAAAAGAAACAAAAA+AGG + tig0023648:63939-63958 Msa1410310:intron 15.0%
!! TTTCATTTATATAAATATGG+GGG - tig0023648:64206-64225 None:intergenic 15.0%
!!! ATTATTGCAAATTATTTTGT+TGG + tig0023648:66345-66364 Msa1410310:CDS 15.0%
!! ACAAACATATACATCTTTAT+GGG + tig0023648:60415-60434 Msa1410310:CDS 20.0%
!! AAAAATTGAATAAAACAAGC+TGG - tig0023648:60707-60726 None:intergenic 20.0%
!!! CAAAATTGGTTACATTTTTT+AGG + tig0023648:61920-61939 Msa1410310:CDS 20.0%
!!! ATTTTTTAGGGACAAAATTT+TGG + tig0023648:61933-61952 Msa1410310:CDS 20.0%
!! TGTGTTTAGATAATTATACA+AGG - tig0023648:62043-62062 None:intergenic 20.0%
!! AACGACATTTAAAAAGAAAT+CGG - tig0023648:62277-62296 None:intergenic 20.0%
!! TTATAAAAGTTGTCACAAAA+TGG - tig0023648:62346-62365 None:intergenic 20.0%
!! TGACAATTAAAAAAGAACAT+AGG + tig0023648:62550-62569 Msa1410310:intron 20.0%
!! AGTTATATTGTAAGATTAGT+GGG - tig0023648:62735-62754 None:intergenic 20.0%
!! AAGTTATATTGTAAGATTAG+TGG - tig0023648:62736-62755 None:intergenic 20.0%
!! AAAGTTGTTAAAATAACGTA+TGG + tig0023648:63451-63470 Msa1410310:intron 20.0%
!! GAGAAGTTTCTATATATAAT+TGG - tig0023648:63549-63568 None:intergenic 20.0%
!! AAATGAAAATCACACATAAA+TGG + tig0023648:64218-64237 Msa1410310:intron 20.0%
!! GTAAGATTTAAACTAAGTTT+AGG + tig0023648:64546-64565 Msa1410310:intron 20.0%
!!! CATTTTTAGAAAATGTAGTA+GGG - tig0023648:64828-64847 None:intergenic 20.0%
!!! TCATTTTTAGAAAATGTAGT+AGG - tig0023648:64829-64848 None:intergenic 20.0%
!!! TTTATATAACTGACTCTTTA+GGG - tig0023648:64877-64896 None:intergenic 20.0%
!!! TTTTATATAACTGACTCTTT+AGG - tig0023648:64878-64897 None:intergenic 20.0%
!! ATCCATATATAATAAAACAG+AGG - tig0023648:65176-65195 None:intergenic 20.0%
!! CTTCATATCAAATTTAAGAA+CGG - tig0023648:65221-65240 None:intergenic 20.0%
!! TATTGGAAGAAATTTATTGT+TGG + tig0023648:65294-65313 Msa1410310:intron 20.0%
!! AAAATATTACATCTTGTTGA+TGG + tig0023648:65390-65409 Msa1410310:CDS 20.0%
!! ATTTGTATAAGCAAAAGAAA+GGG - tig0023648:65674-65693 None:intergenic 20.0%
!! AATTTGTATAAGCAAAAGAA+AGG - tig0023648:65675-65694 None:intergenic 20.0%
!! AAAATCAAATTAGAGAATGA+CGG + tig0023648:65722-65741 Msa1410310:intron 20.0%
!! TAAAAATAAAGAATGTCAAG+TGG + tig0023648:65813-65832 Msa1410310:intron 20.0%
!! CAACCAATCTAAATTATAAT+CGG + tig0023648:65839-65858 Msa1410310:intron 20.0%
!! AACCAATCTAAATTATAATC+GGG + tig0023648:65840-65859 Msa1410310:intron 20.0%
!! ATGAAATGTTTAACATCATT+TGG - tig0023648:66015-66034 None:intergenic 20.0%
!!! ATAATGGGAAATATTAGTAA+AGG + tig0023648:66099-66118 Msa1410310:CDS 20.0%
!!! AAGAAATCTAATTTTGATTG+TGG + tig0023648:66450-66469 Msa1410310:CDS 20.0%
! AAAATATATGATATGTCGGT+CGG - tig0023648:60066-60085 None:intergenic 25.0%
! TGAAGATTACAGAATTGAAA+AGG - tig0023648:60198-60217 None:intergenic 25.0%
!!! TTTTTTTATTGTGATGTCGT+TGG + tig0023648:60264-60283 Msa1410310:intron 25.0%
! CATAAAGATGTATATGTTTG+TGG - tig0023648:60416-60435 None:intergenic 25.0%
! CACAAACATATACATCTTTA+TGG + tig0023648:60414-60433 Msa1410310:CDS 25.0%
! TACTCGATATCAATATATAG+AGG + tig0023648:60729-60748 Msa1410310:intron 25.0%
! AAAATACTACATCTTGTTGA+TGG + tig0023648:60917-60936 Msa1410310:CDS 25.0%
!!! GTAATTGAAAAGGTATTGAT+AGG + tig0023648:61097-61116 Msa1410310:intron 25.0%
! AAAAAAAAGGAATTGACCTT+GGG - tig0023648:61335-61354 None:intergenic 25.0%
! AAAAAAAAAGGAATTGACCT+TGG - tig0023648:61336-61355 None:intergenic 25.0%
! TTCAACATGCTCAAAAAAAA+AGG - tig0023648:61348-61367 None:intergenic 25.0%
! CATTAAAAATAAGACCATTC+TGG - tig0023648:61391-61410 None:intergenic 25.0%
! TTGATCAATTAACATGACAA+TGG - tig0023648:61448-61467 None:intergenic 25.0%
! ATGATAGATCTAACATTACT+TGG - tig0023648:61553-61572 None:intergenic 25.0%
! ATTAAGATATAGACATCCTT+GGG + tig0023648:61609-61628 Msa1410310:CDS 25.0%
!! ATAATGGGAAATATTAGCAA+AGG + tig0023648:61637-61656 Msa1410310:CDS 25.0%
! AAATACAAAAGAATTGAGGA+AGG + tig0023648:61808-61827 Msa1410310:CDS 25.0%
! AATACAAAAGAATTGAGGAA+GGG + tig0023648:61809-61828 Msa1410310:CDS 25.0%
! AATATGCAAATGAAAGAAGA+TGG + tig0023648:61839-61858 Msa1410310:CDS 25.0%
! TAGTGAAGAAAGAAAACTAT+TGG - tig0023648:62124-62143 None:intergenic 25.0%
! ACGACATTTAAAAAGAAATC+GGG - tig0023648:62276-62295 None:intergenic 25.0%
! AAGAAAAGTAGATATTGACA+TGG - tig0023648:62410-62429 None:intergenic 25.0%
! AGTTGAGTGGTTTAAATAAT+TGG - tig0023648:62666-62685 None:intergenic 25.0%
! ATTTAGAAAATGTAGTTGAG+TGG - tig0023648:62679-62698 None:intergenic 25.0%
! AATAAAAACTCAAAGGCAAA+TGG + tig0023648:62809-62828 Msa1410310:intron 25.0%
! ACACACACAATTAAACTTTA+TGG - tig0023648:63226-63245 None:intergenic 25.0%
! ATGACATGGTATAAAATGAT+CGG - tig0023648:63256-63275 None:intergenic 25.0%
! AGTTACATAAAAACATGACA+TGG - tig0023648:63270-63289 None:intergenic 25.0%
! TCATGAAATGAAATTACTGT+TGG + tig0023648:63481-63500 Msa1410310:intron 25.0%
! TTCTATATATAATTGGGCAA+AGG - tig0023648:63542-63561 None:intergenic 25.0%
! TTATATATAGAAACTTCTCG+CGG + tig0023648:63550-63569 Msa1410310:intron 25.0%
! GAAAAAGATATTGTGATTGT+AGG + tig0023648:63696-63715 Msa1410310:intron 25.0%
!! AATATTTGGAATGATGAAAG+TGG + tig0023648:64016-64035 Msa1410310:intron 25.0%
!! ATATTTGGAATGATGAAAGT+GGG + tig0023648:64017-64036 Msa1410310:intron 25.0%
! AATGAGTGTAAATAATCAAG+TGG + tig0023648:64088-64107 Msa1410310:intron 25.0%
!! TGCACCTTAATAATTTTAGA+TGG + tig0023648:64127-64146 Msa1410310:intron 25.0%
!! GCACCTTAATAATTTTAGAT+GGG + tig0023648:64128-64147 Msa1410310:intron 25.0%
!! ACACCCATCTAAAATTATTA+AGG - tig0023648:64134-64153 None:intergenic 25.0%
! ATTACTATCAAACATATGCA+TGG - tig0023648:64619-64638 None:intergenic 25.0%
!! TAATATTGATGATTGCAGAT+TGG + tig0023648:64635-64654 Msa1410310:intron 25.0%
!! AATATTGATGATTGCAGATT+GGG + tig0023648:64636-64655 Msa1410310:intron 25.0%
! TGAAACGAAATAACTTGAAT+TGG + tig0023648:64997-65016 Msa1410310:intron 25.0%
!!! TGCCTCTGTTTTATTATATA+TGG + tig0023648:65171-65190 Msa1410310:intron 25.0%
! ATACCATTGTTAATATGTAG+AGG + tig0023648:65194-65213 Msa1410310:intron 25.0%
! TAGCATAAAAACATACATCA+TGG - tig0023648:65250-65269 None:intergenic 25.0%
!!! TGTATGTTTTTATGCTATAG+TGG + tig0023648:65253-65272 Msa1410310:intron 25.0%
! GAACAAATTGAATCATGATT+AGG - tig0023648:65756-65775 None:intergenic 25.0%
!! CATGATTCAATTTGTTCAAA+CGG + tig0023648:65759-65778 Msa1410310:intron 25.0%
! ATCCCGATTATAATTTAGAT+TGG - tig0023648:65845-65864 None:intergenic 25.0%
! GATTAATAATCGGATTGAAT+CGG - tig0023648:65888-65907 None:intergenic 25.0%
!!! CATATTGTTTTAGTTTAGCA+GGG - tig0023648:65969-65988 None:intergenic 25.0%
!!! ACATATTGTTTTAGTTTAGC+AGG - tig0023648:65970-65989 None:intergenic 25.0%
! AAGAAGAAGAAGAATACAAA+AGG + tig0023648:66265-66284 Msa1410310:CDS 25.0%
!!! TTATTTTGTTGGTTCTATTC+AGG + tig0023648:66356-66375 Msa1410310:CDS 25.0%
! AAAATTGGTTAACTTCTTCA+GGG + tig0023648:66389-66408 Msa1410310:CDS 25.0%
TGAAGAAGATATTGTGATTG+TGG + tig0023648:60119-60138 Msa1410310:CDS 30.0%
GAAGAAGATATTGTGATTGT+GGG + tig0023648:60120-60139 Msa1410310:CDS 30.0%
GATTACAGAATTGAAAAGGT+AGG - tig0023648:60194-60213 None:intergenic 30.0%
!! TGGATTTGCTTTAGGAATAT+GGG + tig0023648:60341-60360 Msa1410310:CDS 30.0%
AAAGATGTATATGTTTGTGG+CGG - tig0023648:60413-60432 None:intergenic 30.0%
ACTTAAGTACTTCCTTGAAT+TGG + tig0023648:60549-60568 Msa1410310:intron 30.0%
CTTAAGTACTTCCTTGAATT+GGG + tig0023648:60550-60569 Msa1410310:intron 30.0%
AATTAGCAACTTTGTCTTTC+AGG + tig0023648:60610-60629 Msa1410310:CDS 30.0%
ATTAGCAACTTTGTCTTTCA+GGG + tig0023648:60611-60630 Msa1410310:CDS 30.0%
GATATCAATATATAGAGGAC+AGG + tig0023648:60734-60753 Msa1410310:intron 30.0%
ATGAGTTATGTAGTGAACTA+CGG + tig0023648:60789-60808 Msa1410310:intron 30.0%
TGTTAGAAGGAAGTTATTGT+TGG + tig0023648:60814-60833 Msa1410310:CDS 30.0%
! AACTTTTGACATGTACCTAA+TGG - tig0023648:60870-60889 None:intergenic 30.0%
!!! ATTGTTTACCTTGGTTTTGA+TGG - tig0023648:60948-60967 None:intergenic 30.0%
TCCATATCTACCTGTATAAA+TGG - tig0023648:61173-61192 None:intergenic 30.0%
ATACAGGTAGATATGGAATT+AGG + tig0023648:61176-61195 Msa1410310:CDS 30.0%
TACAGGTAGATATGGAATTA+GGG + tig0023648:61177-61196 Msa1410310:CDS 30.0%
TTCATTGTTTCATTCCAGAA+TGG + tig0023648:61374-61393 Msa1410310:intron 30.0%
CATATTGCTTCAGTTTAACA+GGG - tig0023648:61507-61526 None:intergenic 30.0%
ACATATTGCTTCAGTTTAAC+AGG - tig0023648:61508-61527 None:intergenic 30.0%
TATATCTTAATGGAGCTGAA+TGG - tig0023648:61600-61619 None:intergenic 30.0%
CAAGGATGTCTATATCTTAA+TGG - tig0023648:61610-61629 None:intergenic 30.0%
CATTAAGATATAGACATCCT+TGG + tig0023648:61608-61627 Msa1410310:CDS 30.0%
!!! TTCTTCTTCCTTTGGTTTTT+TGG - tig0023648:61779-61798 None:intergenic 30.0%
GGAGAAATACAAAAGAATTG+AGG + tig0023648:61804-61823 Msa1410310:CDS 30.0%
ATTACTACAGCTTATATTGC+AGG + tig0023648:61877-61896 Msa1410310:CDS 30.0%
ACAACTCAAATTCATTACCA+CGG - tig0023648:62084-62103 None:intergenic 30.0%
GACATTTAAAAAGAAATCGG+GGG - tig0023648:62274-62293 None:intergenic 30.0%
CGACATTTAAAAAGAAATCG+GGG - tig0023648:62275-62294 None:intergenic 30.0%
! TAAATGTCGTTTGTAAGCAA+AGG + tig0023648:62286-62305 Msa1410310:intron 30.0%
TCATTTGTGAGACAATGTTT+AGG - tig0023648:62450-62469 None:intergenic 30.0%
!! CATTGTAAGTTTTGTAAGAG+TGG - tig0023648:62709-62728 None:intergenic 30.0%
GCATGTCTTCAAAATAGAAT+TGG + tig0023648:62760-62779 Msa1410310:intron 30.0%
TATGGATACCACTATTTAAC+GGG - tig0023648:63053-63072 None:intergenic 30.0%
GTATGGATACCACTATTTAA+CGG - tig0023648:63054-63073 None:intergenic 30.0%
!! TTAATCAAAGTTGGTGTTCA+TGG - tig0023648:63147-63166 None:intergenic 30.0%
AAATCAAAGGTGAACACAAA+CGG + tig0023648:63197-63216 Msa1410310:intron 30.0%
GACATATGCATTTACAGTAT+TGG + tig0023648:63390-63409 Msa1410310:intron 30.0%
GTGAGCTATATACTTAGTAA+TGG + tig0023648:63662-63681 Msa1410310:intron 30.0%
!! ACTTGCACCTTATTGTTTTT+AGG + tig0023648:64163-64182 Msa1410310:intron 30.0%
! ATTTTCACGACAAATTTAGC+TGG + tig0023648:64469-64488 Msa1410310:intron 30.0%
!! TTTTAGAAAATGTAGTAGGG+AGG - tig0023648:64825-64844 None:intergenic 30.0%
GATGTGAAAATGTTCATGAA+AGG - tig0023648:64925-64944 None:intergenic 30.0%
!!! GTGTTTATTGGTTTTTCACA+TGG + tig0023648:65622-65641 Msa1410310:intron 30.0%
TATTATTCACCTTGGTTGAT+AGG - tig0023648:65651-65670 None:intergenic 30.0%
CAAATTGAATCATGATTAGG+TGG - tig0023648:65753-65772 None:intergenic 30.0%
TAACTCTTTATCTGTAAGAC+AGG - tig0023648:65938-65957 None:intergenic 30.0%
AGAAGAATACAAAAGGATTG+AGG + tig0023648:66272-66291 Msa1410310:CDS 30.0%
AGGTTTCAAGAAATATGCAA+AGG + tig0023648:66296-66315 Msa1410310:CDS 30.0%
CAAAATTGGTTAACTTCTTC+AGG + tig0023648:66388-66407 Msa1410310:CDS 30.0%
! CTTCTTCAGGGATAAAATTT+TGG + tig0023648:66401-66420 Msa1410310:CDS 30.0%
TACAGAATTGAAAAGGTAGG+TGG - tig0023648:60191-60210 None:intergenic 35.0%
TCAGATAGTTTGAGAGTAAC+TGG + tig0023648:60321-60340 Msa1410310:CDS 35.0%
! AGAGTAACTGGATTTGCTTT+AGG + tig0023648:60333-60352 Msa1410310:CDS 35.0%
!! CTGGATTTGCTTTAGGAATA+TGG + tig0023648:60340-60359 Msa1410310:CDS 35.0%
TAGGAATATGGGAAAATGCT+TGG + tig0023648:60352-60371 Msa1410310:CDS 35.0%
GTGACTACTTCTTTGATTAC+AGG + tig0023648:60582-60601 Msa1410310:CDS 35.0%
ATTTGGAAGTTCATTGGCAA+GGG - tig0023648:60843-60862 None:intergenic 35.0%
AACTTCCAAATGACACCATT+AGG + tig0023648:60852-60871 Msa1410310:CDS 35.0%
!! ATGTACCTAATGGTGTCATT+TGG - tig0023648:60860-60879 None:intergenic 35.0%
! GTCAAAAGTTGTTGCTATTG+AGG + tig0023648:60880-60899 Msa1410310:CDS 35.0%
GTCACACATATTGTTTACCT+TGG - tig0023648:60957-60976 None:intergenic 35.0%
TGTATCAGTCAAAGCAAACA+AGG - tig0023648:61065-61084 None:intergenic 35.0%
!! AAGGTATTGATAGGATGTGA+TGG + tig0023648:61106-61125 Msa1410310:intron 35.0%
GCCATTTATACAGGTAGATA+TGG + tig0023648:61169-61188 Msa1410310:CDS 35.0%
ACAGGTAGATATGGAATTAG+GGG + tig0023648:61178-61197 Msa1410310:CDS 35.0%
!!! TATGGCAAAGGTTTTAGAGT+TGG + tig0023648:61253-61272 Msa1410310:CDS 35.0%
TAAACACCTTTCTCATGACA+AGG - tig0023648:61286-61305 None:intergenic 35.0%
!!! GTGTTTACTGGTTTTTCACT+TGG + tig0023648:61299-61318 Msa1410310:CDS 35.0%
AAAGGAAATGTTTGTGTTGC+TGG + tig0023648:61655-61674 Msa1410310:CDS 35.0%
!!! TTCCTTTGGTTTTTTGGACA+AGG - tig0023648:61773-61792 None:intergenic 35.0%
AAAACCAAAGGAAGAAGAAG+AGG + tig0023648:61780-61799 Msa1410310:CDS 35.0%
AATAGTTGACCAGCTAGTAA+TGG - tig0023648:61961-61980 None:intergenic 35.0%
!!! AAGAAGTCTGGTTTTGATTG+TGG + tig0023648:61982-62001 Msa1410310:CDS 35.0%
CTCAATTAGCCCTTAATTAG+TGG + tig0023648:62009-62028 Msa1410310:intron 35.0%
! GTAAGTGTGCCACTAATTAA+GGG - tig0023648:62021-62040 None:intergenic 35.0%
! ATGATGATGATGAGCAAAGT+TGG + tig0023648:62154-62173 Msa1410310:intron 35.0%
GATGTGTAAGGTTGTAATCA+AGG + tig0023648:62176-62195 Msa1410310:intron 35.0%
ATTTATACCACCATGTAGAG+TGG - tig0023648:62607-62626 None:intergenic 35.0%
ACTCTACATGGTGGTATAAA+TGG + tig0023648:62606-62625 Msa1410310:intron 35.0%
CTCTACATGGTGGTATAAAT+GGG + tig0023648:62607-62626 Msa1410310:intron 35.0%
AAACTCAAAGGCAAATGGTA+TGG + tig0023648:62814-62833 Msa1410310:intron 35.0%
AAAGGCAAATGGTATGGATA+CGG + tig0023648:62820-62839 Msa1410310:intron 35.0%
TACTACCACCTCGTTAAATA+GGG + tig0023648:62874-62893 Msa1410310:intron 35.0%
AGTATTTCCCCTATTTAACG+AGG - tig0023648:62885-62904 None:intergenic 35.0%
CTTGTGTGACATTAATGTCA+CGG + tig0023648:62903-62922 Msa1410310:intron 35.0%
ATCTAATGTCACCTAATGTG+TGG - tig0023648:62945-62964 None:intergenic 35.0%
ACTTCTTAGAGCACAAACAT+CGG - tig0023648:63111-63130 None:intergenic 35.0%
ATATAATTGGGCAAAGGTCA+AGG - tig0023648:63536-63555 None:intergenic 35.0%
AAAAGGCAATGACATGCTTA+AGG + tig0023648:63956-63975 Msa1410310:intron 35.0%
AAGTGGGTGTAAATTAGTGA+AGG + tig0023648:64033-64052 Msa1410310:intron 35.0%
!!! TGCACCTTATTGTTTTTAGG+TGG + tig0023648:64166-64185 Msa1410310:intron 35.0%
!!! GCACCTTATTGTTTTTAGGT+GGG + tig0023648:64167-64186 Msa1410310:intron 35.0%
ACACCCACCTAAAAACAATA+AGG - tig0023648:64173-64192 None:intergenic 35.0%
GAAAATCACACATAAATGGC+AGG + tig0023648:64222-64241 Msa1410310:intron 35.0%
TGATATGTATGGATGTGTGT+GGG - tig0023648:64365-64384 None:intergenic 35.0%
TTGATATGTATGGATGTGTG+TGG - tig0023648:64366-64385 None:intergenic 35.0%
CACACATCCATACATATCAA+CGG + tig0023648:64366-64385 Msa1410310:intron 35.0%
!!! ATTTAGCTGGCTAGTTTTAG+TGG + tig0023648:64482-64501 Msa1410310:intron 35.0%
!!! TTTAGCTGGCTAGTTTTAGT+GGG + tig0023648:64483-64502 Msa1410310:intron 35.0%
! AGTCAGTGGATTTGCTTTAA+CGG + tig0023648:64698-64717 Msa1410310:CDS 35.0%
! TGGATTTGCTTTAACGGTAT+GGG + tig0023648:64704-64723 Msa1410310:CDS 35.0%
ACCAACATCTACAACTTCAT+GGG + tig0023648:64778-64797 Msa1410310:CDS 35.0%
TCAGGTCATCTTAAAGAATG+AGG - tig0023648:64964-64983 None:intergenic 35.0%
AATAACTTGAATTGGAGTGC+AGG + tig0023648:65005-65024 Msa1410310:intron 35.0%
TGTGACTACTTCTTTGGTTA+TGG + tig0023648:65030-65049 Msa1410310:CDS 35.0%
GTGACTACTTCTTTGGTTAT+GGG + tig0023648:65031-65050 Msa1410310:CDS 35.0%
TGACTACTTCTTTGGTTATG+GGG + tig0023648:65032-65051 Msa1410310:CDS 35.0%
ACGTCTTTCATAGACAACAA+AGG + tig0023648:65070-65089 Msa1410310:CDS 35.0%
GGTCCTCTACATATTAACAA+TGG - tig0023648:65200-65219 None:intergenic 35.0%
!!! AATCAACACCTTGGTTTTGA+TGG - tig0023648:65421-65440 None:intergenic 35.0%
!! ATCAAAACCAAGGTGTTGAT+TGG + tig0023648:65420-65439 Msa1410310:CDS 35.0%
!! TCAAAACCAAGGTGTTGATT+GGG + tig0023648:65421-65440 Msa1410310:CDS 35.0%
! AGTACTTTGGCAAAGGTTTT+AGG + tig0023648:65571-65590 Msa1410310:CDS 35.0%
! GTACTTTGGCAAAGGTTTTA+GGG + tig0023648:65572-65591 Msa1410310:CDS 35.0%
!! AGAAAGGGTATTATTCACCT+TGG - tig0023648:65659-65678 None:intergenic 35.0%
GATCAAATCAACTAGTGAGT+TGG + tig0023648:65862-65881 Msa1410310:intron 35.0%
ATTGAGACATAGACATCCTT+GGG + tig0023648:66071-66090 Msa1410310:CDS 35.0%
!!! GGCTTTTTTGAAGAAACCAA+AGG + tig0023648:66230-66249 Msa1410310:CDS 35.0%
TCTTCTTCTTCTTCTTCCTT+TGG - tig0023648:66249-66268 None:intergenic 35.0%
GAATACAAAAGGATTGAGGA+AGG + tig0023648:66276-66295 Msa1410310:CDS 35.0%
AATATGCAAAGGAGAGAAGA+TGG + tig0023648:66307-66326 Msa1410310:CDS 35.0%
TCAGGAAAGTGGTTCAAAAT+TGG + tig0023648:66374-66393 Msa1410310:CDS 35.0%
AGCTGTTATAACTGGACACA+AGG + tig0023648:60009-60028 Msa1410310:CDS 40.0%
TTTATTGTGATGTCGTTGGC+AGG + tig0023648:60268-60287 Msa1410310:intron 40.0%
GGGTGTAAGAAGTTTGGTAT+TGG + tig0023648:60293-60312 Msa1410310:CDS 40.0%
ACTTTGTCTTTCAGGGACAA+AGG + tig0023648:60618-60637 Msa1410310:CDS 40.0%
CATTTGGAAGTTCATTGGCA+AGG - tig0023648:60844-60863 None:intergenic 40.0%
!! GGTGTCATTTGGAAGTTCAT+TGG - tig0023648:60849-60868 None:intergenic 40.0%
! GTTGTTGCTATTGAGGAATC+TGG + tig0023648:60887-60906 Msa1410310:CDS 40.0%
TGGAACAACCATCAAAACCA+AGG + tig0023648:60937-60956 Msa1410310:CDS 40.0%
! ATGTGATGGAATCAACTCTG+TGG + tig0023648:61120-61139 Msa1410310:CDS 40.0%
TTCAAGGAGGCCATTTATAC+AGG + tig0023648:61160-61179 Msa1410310:CDS 40.0%
! AATTAGGGGTTTTGCAGAGT+TGG + tig0023648:61192-61211 Msa1410310:CDS 40.0%
CCATAGAACTGCATAAGCAT+AGG - tig0023648:61238-61257 None:intergenic 40.0%
CCTATGCTTATGCAGTTCTA+TGG + tig0023648:61235-61254 Msa1410310:CDS 40.0%
CTTATGCAGTTCTATGGCAA+AGG + tig0023648:61241-61260 Msa1410310:CDS 40.0%
GTTGTTCCTTGTCATGAGAA+AGG + tig0023648:61277-61296 Msa1410310:CDS 40.0%
!! GTCATGAGAAAGGTGTTTAC+TGG + tig0023648:61287-61306 Msa1410310:CDS 40.0%
AAAAAGGAATTGACCTTGGG+TGG - tig0023648:61332-61351 None:intergenic 40.0%
!! CTTGACTTGTGTTGCAGATA+AGG + tig0023648:61468-61487 Msa1410310:intron 40.0%
TGTTGCAGATAAGGAGCTAA+TGG + tig0023648:61477-61496 Msa1410310:intron 40.0%
! AGCCTTGTCCAAAAAACCAA+AGG + tig0023648:61768-61787 Msa1410310:CDS 40.0%
!! TATTGCAGGTGTTATTCAGC+AGG + tig0023648:61891-61910 Msa1410310:CDS 40.0%
! TCAGCAGGCTGATTCAAAAT+TGG + tig0023648:61906-61925 Msa1410310:CDS 40.0%
!!! ATTTTGGCTCCATTACTAGC+TGG + tig0023648:61949-61968 Msa1410310:CDS 40.0%
GGTCAACTATTCAAGAAGTC+TGG + tig0023648:61970-61989 Msa1410310:CDS 40.0%
! GGTAAGTGTGCCACTAATTA+AGG - tig0023648:62022-62041 None:intergenic 40.0%
TGAGCAAAGTTGGATGTGTA+AGG + tig0023648:62164-62183 Msa1410310:intron 40.0%
TACGGTTCCATTCTTTACCA+CGG + tig0023648:62838-62857 Msa1410310:intron 40.0%
CTACTACCACCTCGTTAAAT+AGG + tig0023648:62873-62892 Msa1410310:intron 40.0%
ACTACCACCTCGTTAAATAG+GGG + tig0023648:62875-62894 Msa1410310:intron 40.0%
ATTTCCCCTATTTAACGAGG+TGG - tig0023648:62882-62901 None:intergenic 40.0%
TGTCACGGTGACATTAAATC+TGG + tig0023648:62918-62937 Msa1410310:intron 40.0%
GTCACGGTGACATTAAATCT+GGG + tig0023648:62919-62938 Msa1410310:intron 40.0%
TTAAATCTGGGCCACACATT+AGG + tig0023648:62931-62950 Msa1410310:intron 40.0%
TTGTCATTGCCATTGCATCT+GGG - tig0023648:62979-62998 None:intergenic 40.0%
ATTGTCATTGCCATTGCATC+TGG - tig0023648:62980-62999 None:intergenic 40.0%
TTGGCACTATGAGATATCAG+TGG + tig0023648:63500-63519 Msa1410310:intron 40.0%
GCTATAGGTAAGGATGATGA+TGG - tig0023648:63590-63609 None:intergenic 40.0%
!! ACAGAAGCTTGCTATAGGTA+AGG - tig0023648:63600-63619 None:intergenic 40.0%
!! AATGGACAGAAGCTTGCTAT+AGG - tig0023648:63605-63624 None:intergenic 40.0%
GATATTGTGATTGTAGGAGC+TGG + tig0023648:63702-63721 Msa1410310:intron 40.0%
ACACATAAATGGCAGGTAAG+CGG + tig0023648:64229-64248 Msa1410310:intron 40.0%
TGGAGTCCAAAAAGACTTAG+CGG - tig0023648:64268-64287 None:intergenic 40.0%
! AGTCTTTTTGGACTCCACTT+TGG + tig0023648:64271-64290 Msa1410310:intron 40.0%
GATATGTATGGATGTGTGTG+GGG - tig0023648:64364-64383 None:intergenic 40.0%
ATACTTCAGTGCCATAGCAA+TGG - tig0023648:64421-64440 None:intergenic 40.0%
!! CAGATTGGGCATTGAAAGTT+TGG + tig0023648:64650-64669 Msa1410310:intron 40.0%
TCAGATAGTTTGAGAGTCAG+TGG + tig0023648:64684-64703 Msa1410310:intron 40.0%
! GTGGATTTGCTTTAACGGTA+TGG + tig0023648:64703-64722 Msa1410310:CDS 40.0%
TAACGGTATGGGAAAATGCT+TGG + tig0023648:64715-64734 Msa1410310:CDS 40.0%
CATGAAGTTGTAGATGTTGG+TGG - tig0023648:64779-64798 None:intergenic 40.0%
CACCAACATCTACAACTTCA+TGG + tig0023648:64777-64796 Msa1410310:CDS 40.0%
ACCCATGAAGTTGTAGATGT+TGG - tig0023648:64782-64801 None:intergenic 40.0%
TATTTCGTTTCAGCCTCTCT+TGG - tig0023648:64989-65008 None:intergenic 40.0%
CAGGAATGTGACTACTTCTT+TGG + tig0023648:60575-60594 Msa1410310:intron 40.0%
TTCCAATACACCGAACTTCA+CGG - tig0023648:65282-65301 None:intergenic 40.0%
TAGCAACAACCTGTACCTAA+TGG - tig0023648:65350-65369 None:intergenic 40.0%
! GTTGTTGCTATTCAGGAATC+TGG + tig0023648:65360-65379 Msa1410310:intron 40.0%
TGGAACAACCATCAAAACCA+AGG + tig0023648:60937-60956 Msa1410310:CDS 40.0%
!! CCAAAGTACTGCATGAACAT+TGG - tig0023648:65561-65580 None:intergenic 40.0%
CCAATGTTCATGCAGTACTT+TGG + tig0023648:65558-65577 Msa1410310:CDS 40.0%
TTCATGCAGTACTTTGGCAA+AGG + tig0023648:65564-65583 Msa1410310:CDS 40.0%
AGCTATTCCATGTGATGACA+AGG + tig0023648:65599-65618 Msa1410310:CDS 40.0%
GCTATTCCATGTGATGACAA+GGG + tig0023648:65600-65619 Msa1410310:CDS 40.0%
TAAACACCCTTGTCATCACA+TGG - tig0023648:65609-65628 None:intergenic 40.0%
!! GTGATGACAAGGGTGTTTAT+TGG + tig0023648:65610-65629 Msa1410310:intron 40.0%
CAAGGATGTCTATGTCTCAA+TGG - tig0023648:66072-66091 None:intergenic 40.0%
CATTGAGACATAGACATCCT+TGG + tig0023648:66070-66089 Msa1410310:CDS 40.0%
ACATCCTTGGGAGCTAATAA+TGG + tig0023648:66083-66102 Msa1410310:CDS 40.0%
CATCCTTGGGAGCTAATAAT+GGG + tig0023648:66084-66103 Msa1410310:CDS 40.0%
TTTCCCATTATTAGCTCCCA+AGG - tig0023648:66090-66109 None:intergenic 40.0%
AAAGGCAATGTTTGTGTTGC+TGG + tig0023648:66117-66136 Msa1410310:CDS 40.0%
! GGTGTTGTGCATTAGAAGAT+GGG + tig0023648:66181-66200 Msa1410310:CDS 40.0%
GTGTTGTGCATTAGAAGATG+GGG + tig0023648:66182-66201 Msa1410310:CDS 40.0%
!! GTTGGTTCTATTCAGGAAAG+TGG + tig0023648:66363-66382 Msa1410310:CDS 40.0%
GATATTGTGATTGTGGGAGC+TGG + tig0023648:60126-60145 Msa1410310:CDS 45.0%
GAAGTCCTAAGGCAGTAGTA+AGG - tig0023648:60161-60180 None:intergenic 45.0%
! CAGGTTGGGTGTAAGAAGTT+TGG + tig0023648:60287-60306 Msa1410310:intron 45.0%
GGAAAATGCTTGGAAAGCCT+TGG + tig0023648:60362-60381 Msa1410310:CDS 45.0%
GATGTATATGTTTGTGGCGG+AGG - tig0023648:60410-60429 None:intergenic 45.0%
TACTTCCTTGAATTGGGTGC+AGG + tig0023648:60556-60575 Msa1410310:intron 45.0%
ACATTCCTGCACCCAATTCA+AGG - tig0023648:60564-60583 None:intergenic 45.0%
! GTGAACTACGGAGTGTTAGA+AGG + tig0023648:60801-60820 Msa1410310:intron 45.0%
TCAACTCTGTGGTTGCAAAG+TGG + tig0023648:61131-61150 Msa1410310:CDS 45.0%
TCTGTGGTTGCAAAGTGGTT+AGG + tig0023648:61136-61155 Msa1410310:CDS 45.0%
TGCAAAGTGGTTAGGCTTCA+AGG + tig0023648:61144-61163 Msa1410310:CDS 45.0%
AAAGTGGTTAGGCTTCAAGG+AGG + tig0023648:61147-61166 Msa1410310:CDS 45.0%
ACATCCTTGGGAGCTCATAA+TGG + tig0023648:61621-61640 Msa1410310:CDS 45.0%
CATCCTTGGGAGCTCATAAT+GGG + tig0023648:61622-61641 Msa1410310:CDS 45.0%
TTTCCCATTATGAGCTCCCA+AGG - tig0023648:61628-61647 None:intergenic 45.0%
! TGACCAAGATCAGGTGTCAT+GGG - tig0023648:61694-61713 None:intergenic 45.0%
TTGACCAAGATCAGGTGTCA+TGG - tig0023648:61695-61714 None:intergenic 45.0%
ATGACACCTGATCTTGGTCA+AGG + tig0023648:61694-61713 Msa1410310:CDS 45.0%
TGACACCTGATCTTGGTCAA+GGG + tig0023648:61695-61714 Msa1410310:CDS 45.0%
!! GGTGTTGTGCTTTAGAGGAT+GGG + tig0023648:61719-61738 Msa1410310:intron 45.0%
!! GTGTTGTGCTTTAGAGGATG+GGG + tig0023648:61720-61739 Msa1410310:intron 45.0%
ACCAAAGGAAGAAGAAGAGG+AGG + tig0023648:61783-61802 Msa1410310:CDS 45.0%
TCCTCCTCTTCTTCTTCCTT+TGG - tig0023648:61787-61806 None:intergenic 45.0%
!!! TGTCGCTTTTCTTTTTGCCG+TGG + tig0023648:62064-62083 Msa1410310:intron 45.0%
ATGTAGAGTGGCATGGATGT+GGG - tig0023648:62595-62614 None:intergenic 45.0%
GTTGGAACCGTGGTAAAGAA+TGG - tig0023648:62848-62867 None:intergenic 45.0%
TAACGAGGTGGTAGTAGCAT+TGG - tig0023648:62870-62889 None:intergenic 45.0%
GCAATGGCAATGACAATGTG+TGG + tig0023648:62983-63002 Msa1410310:intron 45.0%
! CTATTTAACGGGTGGCACTT+TGG - tig0023648:63042-63061 None:intergenic 45.0%
AAGTGCCACCCGTTAAATAG+TGG + tig0023648:63042-63061 Msa1410310:intron 45.0%
GGATACCACTATTTAACGGG+TGG - tig0023648:63050-63069 None:intergenic 45.0%
TGTGGCATCTTGTGTCAGTA+TGG - tig0023648:63071-63090 None:intergenic 45.0%
TCTTAGAGCACAAACATCGG+TGG - tig0023648:63108-63127 None:intergenic 45.0%
ATTGTAGGAGCTGGAATTGC+TGG + tig0023648:63711-63730 Msa1410310:intron 45.0%
! GTTTCGCCGCTAAGTCTTTT+TGG + tig0023648:64259-64278 Msa1410310:intron 45.0%
!! CTCCACTTTGGTGCCATTAA+TGG + tig0023648:64283-64302 Msa1410310:intron 45.0%
TGCCATTAATGGCACCAAAG+TGG - tig0023648:64288-64307 None:intergenic 45.0%
!! ATGCAATGGTATGGTGCCAT+TGG - tig0023648:64311-64330 None:intergenic 45.0%
ATCCATACATATCAACGGCC+AGG + tig0023648:64371-64390 Msa1410310:intron 45.0%
ATCCTGGCCGTTGATATGTA+TGG - tig0023648:64376-64395 None:intergenic 45.0%
TACATATCAACGGCCAGGAT+TGG + tig0023648:64376-64395 Msa1410310:intron 45.0%
!! GATTGGTTCTATGGCACCAA+TGG + tig0023648:64393-64412 Msa1410310:intron 45.0%
GGTATGGGAAAATGCTTGGA+AGG + tig0023648:64719-64738 Msa1410310:CDS 45.0%
! GAAGTTGTAGATGTTGGTGG+CGG - tig0023648:64776-64795 None:intergenic 45.0%
TCCAATACACCGAACTTCAC+GGG - tig0023648:65281-65300 None:intergenic 45.0%
ACTAGGAAGCTCATTGGCAA+GGG - tig0023648:65323-65342 None:intergenic 45.0%
! GGTACAGGTTGTTGCTATTC+AGG + tig0023648:65353-65372 Msa1410310:intron 45.0%
ATCACACCCAATCAACACCT+TGG - tig0023648:65430-65449 None:intergenic 45.0%
!! AAGGTGTTGATTGGGTGTGA+TGG + tig0023648:65429-65448 Msa1410310:CDS 45.0%
! GTGTGATGGAGTAAACTCTG+TGG + tig0023648:65443-65462 Msa1410310:CDS 45.0%
TGATGGAGTAAACTCTGTGG+TGG + tig0023648:65446-65465 Msa1410310:CDS 45.0%
TAAACTCTGTGGTGGCAAAG+TGG + tig0023648:65454-65473 Msa1410310:CDS 45.0%
TTCAACGAAGCCTCATACAC+AGG + tig0023648:65483-65502 Msa1410310:CDS 45.0%
TCAACGAAGCCTCATACACA+GGG + tig0023648:65484-65503 Msa1410310:CDS 45.0%
TGCATATCTCCCTGTGTATG+AGG - tig0023648:65496-65515 None:intergenic 45.0%
!! CATTGGTTCAAGCTTGTGAG+TGG - tig0023648:65544-65563 None:intergenic 45.0%
!!! TTTGGCAAAGGTTTTAGGGC+TGG + tig0023648:65576-65595 Msa1410310:CDS 45.0%
ACATGGACTCCTATCAACCA+AGG + tig0023648:65639-65658 Msa1410310:intron 45.0%
! GGGTGTTGTGCATTAGAAGA+TGG + tig0023648:66180-66199 Msa1410310:CDS 45.0%
TTGTGCATTAGAAGATGGGG+TGG + tig0023648:66185-66204 Msa1410310:CDS 45.0%
! TTTAGCGAGGTGTTTAGCTG+AGG + tig0023648:66209-66228 Msa1410310:CDS 45.0%
!! TAAAATATTAAAAAAATCAA+AGG + tig0023648:63184-63203 Msa1410310:intron 5.0%
!!! ATTTTCATTTATATAAATAT+GGG - tig0023648:64208-64227 None:intergenic 5.0%
CTGGACACAAGGTTACTCTC+CGG + tig0023648:60020-60039 Msa1410310:CDS 50.0%
ATTGTGGGAGCTGGAATTGC+TGG + tig0023648:60135-60154 Msa1410310:CDS 50.0%
CTACTGCCTTAGGACTTCAC+AGG + tig0023648:60163-60182 Msa1410310:CDS 50.0%
GTGGTACCTGTGAAGTCCTA+AGG - tig0023648:60172-60191 None:intergenic 50.0%
TTGTGATGTCGTTGGCAGGT+TGG + tig0023648:60272-60291 Msa1410310:intron 50.0%
TGTGATGTCGTTGGCAGGTT+GGG + tig0023648:60273-60292 Msa1410310:intron 50.0%
TGGAAAGCCTTGGATGCTGT+TGG + tig0023648:60372-60391 Msa1410310:CDS 50.0%
TCCAACACCAACAGCATCCA+AGG - tig0023648:60382-60401 None:intergenic 50.0%
AGGAATTGACCTTGGGTGGT+AGG - tig0023648:61328-61347 None:intergenic 50.0%
! GACCAAGATCAGGTGTCATG+GGG - tig0023648:61693-61712 None:intergenic 50.0%
GACACCTGATCTTGGTCAAG+GGG + tig0023648:61696-61715 Msa1410310:CDS 50.0%
ACACCTGATCTTGGTCAAGG+GGG + tig0023648:61697-61716 Msa1410310:CDS 50.0%
!! GGGTGTTGTGCTTTAGAGGA+TGG + tig0023648:61718-61737 Msa1410310:intron 50.0%
!! TTGTGCTTTAGAGGATGGGG+TGG + tig0023648:61723-61742 Msa1410310:intron 50.0%
!!! AGGATGGGGTGGTTTTAGCA+AGG + tig0023648:61734-61753 Msa1410310:intron 50.0%
CATGTAGAGTGGCATGGATG+TGG - tig0023648:62596-62615 None:intergenic 50.0%
CACATCCATGCCACTCTACA+TGG + tig0023648:62594-62613 Msa1410310:intron 50.0%
ATCCATGCCACTCTACATGG+TGG + tig0023648:62597-62616 Msa1410310:intron 50.0%
TACCACCATGTAGAGTGGCA+TGG - tig0023648:62602-62621 None:intergenic 50.0%
!! AGTAGCATTGGTTGGAACCG+TGG - tig0023648:62858-62877 None:intergenic 50.0%
!! GAGGTGGTAGTAGCATTGGT+TGG - tig0023648:62866-62885 None:intergenic 50.0%
GTTGTGTGACCCAGATGCAA+TGG + tig0023648:62967-62986 Msa1410310:intron 50.0%
AATGTGTGGCCCAGATGCAA+TGG + tig0023648:62997-63016 Msa1410310:intron 50.0%
TAGAGCACAAACATCGGTGG+TGG - tig0023648:63105-63124 None:intergenic 50.0%
GAAGTCCCAAGGATGTTGTG+AGG - tig0023648:63737-63756 None:intergenic 50.0%
CAACATCCTTGGGACTTCAC+AGG + tig0023648:63739-63758 Msa1410310:CDS 50.0%
! AGAGTACCTGTGAAGTCCCA+AGG - tig0023648:63748-63767 None:intergenic 50.0%
!! GGTGCCATTAATGGCACCAA+TGG + tig0023648:64292-64311 Msa1410310:intron 50.0%
!! GGTGCCATTGGTGCCATTAA+TGG - tig0023648:64299-64318 None:intergenic 50.0%
! GTGGTGGAGATGCAATGGTA+TGG - tig0023648:64320-64339 None:intergenic 50.0%
! TGTGTGTGGTGGAGATGCAA+TGG - tig0023648:64325-64344 None:intergenic 50.0%
TGTGTGATGTGTGTGTGTGG+TGG - tig0023648:64336-64355 None:intergenic 50.0%
GTGTGTGTGATGTGTGTGTG+TGG - tig0023648:64339-64358 None:intergenic 50.0%
!! AACGGCCAGGATTGGTTCTA+TGG + tig0023648:64384-64403 Msa1410310:intron 50.0%
!! TGGTGCCATAGAACCAATCC+TGG - tig0023648:64392-64411 None:intergenic 50.0%
CACCAATGGCACCATTGCTA+TGG + tig0023648:64407-64426 Msa1410310:intron 50.0%
!! TGCCATAGCAATGGTGCCAT+TGG - tig0023648:64412-64431 None:intergenic 50.0%
! GGAAAATGCTTGGAAGGCGT+TGG + tig0023648:64725-64744 Msa1410310:CDS 50.0%
AGATGACCTGATGCCAAGAG+AGG + tig0023648:64973-64992 Msa1410310:intron 50.0%
TTTCAGCCTCTCTTGGCATC+AGG - tig0023648:64982-65001 None:intergenic 50.0%
! ATAGTGGAGCCCGTGAAGTT+CGG + tig0023648:65269-65288 Msa1410310:intron 50.0%
CTAGGAAGCTCATTGGCAAG+GGG - tig0023648:65322-65341 None:intergenic 50.0%
CACTAGGAAGCTCATTGGCA+AGG - tig0023648:65324-65343 None:intergenic 50.0%
CTTGCCAATGAGCTTCCTAG+TGG + tig0023648:65322-65341 Msa1410310:intron 50.0%
AGCTTCCTAGTGGCACCATT+AGG + tig0023648:65332-65351 Msa1410310:intron 50.0%
!! CTGTACCTAATGGTGCCACT+AGG - tig0023648:65340-65359 None:intergenic 50.0%
CTAGTGGCACCATTAGGTAC+AGG + tig0023648:65338-65357 Msa1410310:intron 50.0%
ACACAGGGAGATATGCAACG+AGG + tig0023648:65499-65518 Msa1410310:CDS 50.0%
CACAGGGAGATATGCAACGA+GGG + tig0023648:65500-65519 Msa1410310:CDS 50.0%
ACAGGGAGATATGCAACGAG+GGG + tig0023648:65501-65520 Msa1410310:CDS 50.0%
CACCCTATGATGCCTGATCT+TGG + tig0023648:66150-66169 Msa1410310:CDS 50.0%
GGCCAAGATCAGGCATCATA+GGG - tig0023648:66155-66174 None:intergenic 50.0%
TGGCCAAGATCAGGCATCAT+AGG - tig0023648:66156-66175 None:intergenic 50.0%
ATGATGCCTGATCTTGGCCA+AGG + tig0023648:66156-66175 Msa1410310:CDS 50.0%
CTAATGCACAACACCCTCCT+TGG - tig0023648:66176-66195 None:intergenic 50.0%
!!! AAGATGGGGTGGTTTTAGCG+AGG + tig0023648:66196-66215 Msa1410310:CDS 50.0%
GAGTAACCTTGGTCGATGGC+CGG - tig0023648:60042-60061 None:intergenic 55.0%
CGGAGAGTAACCTTGGTCGA+TGG - tig0023648:60046-60065 None:intergenic 55.0%
TGTCGGTCGGAGAGTAACCT+TGG - tig0023648:60053-60072 None:intergenic 55.0%
!! GCTGGCCTTACTACTGCCTT+AGG + tig0023648:60153-60172 Msa1410310:CDS 55.0%
GCCTTGGATGCTGTTGGTGT+TGG + tig0023648:60378-60397 Msa1410310:CDS 55.0%
ACTTGGAGTCCTACCACCCA+AGG + tig0023648:61316-61335 Msa1410310:CDS 55.0%
CACCCCATGACACCTGATCT+TGG + tig0023648:61688-61707 Msa1410310:CDS 55.0%
CACCTGATCTTGGTCAAGGG+GGG + tig0023648:61698-61717 Msa1410310:CDS 55.0%
!! AGGGGGGTGTTGTGCTTTAG+AGG + tig0023648:61714-61733 Msa1410310:intron 55.0%
! GTCACCGTGCCATTGCATCT+GGG - tig0023648:63009-63028 None:intergenic 55.0%
! TGTCACCGTGCCATTGCATC+TGG - tig0023648:63010-63029 None:intergenic 55.0%
GTGGTGGCATTGCTTACGTG+TGG - tig0023648:63089-63108 None:intergenic 55.0%
! TGCTGGCCTCACAACATCCT+TGG + tig0023648:63728-63747 Msa1410310:CDS 55.0%
! GCTGGCCTCACAACATCCTT+GGG + tig0023648:63729-63748 Msa1410310:CDS 55.0%
!! TGGAAGGCGTTGGATGTCGT+TGG + tig0023648:64735-64754 Msa1410310:CDS 55.0%
GCGTTGGATGTCGTTGGTGT+TGG + tig0023648:64741-64760 Msa1410310:CDS 55.0%
!! GTTGTAGATGTTGGTGGCGG+AGG - tig0023648:64773-64792 None:intergenic 55.0%
!! GCCCGTGAAGTTCGGTGTAT+TGG + tig0023648:65277-65296 Msa1410310:intron 55.0%
!! GGTGCCACTAGGAAGCTCAT+TGG - tig0023648:65329-65348 None:intergenic 55.0%
TCTGTGGTGGCAAAGTGGCT+AGG + tig0023648:65459-65478 Msa1410310:CDS 55.0%
ATGCCTGATCTTGGCCAAGG+AGG + tig0023648:66159-66178 Msa1410310:CDS 55.0%
TGCCTGATCTTGGCCAAGGA+GGG + tig0023648:66160-66179 Msa1410310:CDS 55.0%
TACTCTCCGGCCATCGACCA+AGG + tig0023648:60033-60052 Msa1410310:CDS 60.0%
CACCCCCCTTGACCAAGATC+AGG - tig0023648:61703-61722 None:intergenic 60.0%
GTGGCCCAGATGCAATGGCA+CGG + tig0023648:63002-63021 Msa1410310:intron 60.0%
CACCCTCCTTGGCCAAGATC+AGG - tig0023648:66165-66184 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0023648 gene 60006 66494 60006 ID=Msa1410310;Name=Msa1410310
tig0023648 mRNA 60006 66494 60006 ID=Msa1410310-mRNA-1;Parent=Msa1410310;Name=Msa1410310-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.5|0.38|1|0.58|0.61|13|0|743
tig0023648 exon 60006 60184 60006 ID=Msa1410310-mRNA-1:exon:26484;Parent=Msa1410310-mRNA-1
tig0023648 exon 60290 60436 60290 ID=Msa1410310-mRNA-1:exon:26485;Parent=Msa1410310-mRNA-1
tig0023648 exon 60578 60646 60578 ID=Msa1410310-mRNA-1:exon:26486;Parent=Msa1410310-mRNA-1
tig0023648 exon 60802 60958 60802 ID=Msa1410310-mRNA-1:exon:26487;Parent=Msa1410310-mRNA-1
tig0023648 exon 61109 61337 61109 ID=Msa1410310-mRNA-1:exon:26488;Parent=Msa1410310-mRNA-1
tig0023648 exon 61485 61719 61485 ID=Msa1410310-mRNA-1:exon:26489;Parent=Msa1410310-mRNA-1
tig0023648 exon 61756 62003 61756 ID=Msa1410310-mRNA-1:exon:26490;Parent=Msa1410310-mRNA-1
tig0023648 exon 63718 63760 63718 ID=Msa1410310-mRNA-1:exon:26491;Parent=Msa1410310-mRNA-1
tig0023648 exon 64692 64799 64692 ID=Msa1410310-mRNA-1:exon:26492;Parent=Msa1410310-mRNA-1
tig0023648 exon 65027 65098 65027 ID=Msa1410310-mRNA-1:exon:26493;Parent=Msa1410310-mRNA-1
tig0023648 exon 65140 65146 65140 ID=Msa1410310-mRNA-1:exon:26494;Parent=Msa1410310-mRNA-1
tig0023648 exon 65375 65621 65375 ID=Msa1410310-mRNA-1:exon:26495;Parent=Msa1410310-mRNA-1
tig0023648 exon 66004 66494 66004 ID=Msa1410310-mRNA-1:exon:26496;Parent=Msa1410310-mRNA-1
tig0023648 CDS 60006 60184 60006 ID=Msa1410310-mRNA-1:cds;Parent=Msa1410310-mRNA-1
tig0023648 CDS 60290 60436 60290 ID=Msa1410310-mRNA-1:cds;Parent=Msa1410310-mRNA-1
tig0023648 CDS 60578 60646 60578 ID=Msa1410310-mRNA-1:cds;Parent=Msa1410310-mRNA-1
tig0023648 CDS 60802 60958 60802 ID=Msa1410310-mRNA-1:cds;Parent=Msa1410310-mRNA-1
tig0023648 CDS 61109 61337 61109 ID=Msa1410310-mRNA-1:cds;Parent=Msa1410310-mRNA-1
tig0023648 CDS 61485 61719 61485 ID=Msa1410310-mRNA-1:cds;Parent=Msa1410310-mRNA-1
tig0023648 CDS 61756 62003 61756 ID=Msa1410310-mRNA-1:cds;Parent=Msa1410310-mRNA-1
tig0023648 CDS 63718 63760 63718 ID=Msa1410310-mRNA-1:cds;Parent=Msa1410310-mRNA-1
tig0023648 CDS 64692 64799 64692 ID=Msa1410310-mRNA-1:cds;Parent=Msa1410310-mRNA-1
tig0023648 CDS 65027 65098 65027 ID=Msa1410310-mRNA-1:cds;Parent=Msa1410310-mRNA-1
tig0023648 CDS 65140 65146 65140 ID=Msa1410310-mRNA-1:cds;Parent=Msa1410310-mRNA-1
tig0023648 CDS 65375 65621 65375 ID=Msa1410310-mRNA-1:cds;Parent=Msa1410310-mRNA-1
tig0023648 CDS 66004 66494 66004 ID=Msa1410310-mRNA-1:cds;Parent=Msa1410310-mRNA-1
Gene Sequence

>Msa1410310

AAGAGCTGTTATAACTGGACACAAGGTTACTCTCCGGCCATCGACCAAGGTTACTCTCCGACCGACATATCATATATTTTAAATTTGTTTGTAATGGAAACAACAAAAATAGTTGAAGAAGATATTGTGATTGTGGGAGCTGGAATTGCTGGCCTTACTACTGCCTTAGGACTTCACAGGTTGGGTGTAAGAAGTTTGGTATTGGAATCTTCAGATAGTTTGAGAGTAACTGGATTTGCTTTAGGAATATGGGAAAATGCTTGGAAAGCCTTGGATGCTGTTGGTGTTGGAGATATCCTCCGCCACAAACATATACATCTTTATGGGAATGTGACTACTTCTTTGATTACAGGACAGCAATTAGCAACTTTGTCTTTCAGGGACAAAGGAAAGCTTGAACTACGGAGTGTTAGAAGGAAGTTATTGTTGGAAGCCCTTGCCAATGAACTTCCAAATGACACCATTAGGTACATGTCAAAAGTTGTTGCTATTGAGGAATCTGGATTCTTTAAAATACTACATCTTGTTGATGGAACAACCATCAAAACCAAGGTATTGATAGGATGTGATGGAATCAACTCTGTGGTTGCAAAGTGGTTAGGCTTCAAGGAGGCCATTTATACAGGTAGATATGGAATTAGGGGTTTTGCAGAGTTGGAAAACAATCACAGTTTTGAGCCTATGCTTATGCAGTTCTATGGCAAAGGTTTTAGAGTTGGAGTTGTTCCTTGTCATGAGAAAGGTGTTTACTGGTTTTTCACTTGGAGTCCTACCACCCAAGATAAGGAGCTAATGGAGAACCCTGTTAAACTGAAGCAATATGTGTTAAACAAGCTAGAGAATATGCCAAGTAATGTTAGATCTATCATAGAAAAAACAGAGATAGATGCTTTCCATTCAGCTCCATTAAGATATAGACATCCTTGGGAGCTCATAATGGGAAATATTAGCAAAGGAAATGTTTGTGTTGCTGGTGATGCTTTACACCCCATGACACCTGATCTTGGTCAAGGGGGGTGTCTAGCTGAAGCCTTGTCCAAAAAACCAAAGGAAGAAGAAGAGGAGGAGAAATACAAAAGAATTGAGGAAGGGTTGAAGAAATATGCAAATGAAAGAAGATGGAGATGCATTGATCTTATTACTACAGCTTATATTGCAGGTGTTATTCAGCAGGCTGATTCAAAATTGGTTACATTTTTTAGGGACAAAATTTTGGCTCCATTACTAGCTGGTCAACTATTCAAGAAGTCTGGTTTTGATTGTGGAGCTGGAATTGCTGGCCTCACAACATCCTTGGGACTTCACAGTTTGAGAGTCAGTGGATTTGCTTTAACGGTATGGGAAAATGCTTGGAAGGCGTTGGATGTCGTTGGTGTTGGAGACATCCTCCGCCACCAACATCTACAACTTCATGGGAATGTGACTACTTCTTTGGTTATGGGGCAACAAACATCATCTACGTCTTTCATAGACAACAAAGGAAAGTATCTAGAAGAATCTGGCTTCTCTAAAATATTACATCTTGTTGATGGAACAACCATCAAAACCAAGGTGTTGATTGGGTGTGATGGAGTAAACTCTGTGGTGGCAAAGTGGCTAGGCTTCAACGAAGCCTCATACACAGGGAGATATGCAACGAGGGGTTATGCAGAGTTGAAGACCACTCACAAGCTTGAACCAATGTTCATGCAGTACTTTGGCAAAGGTTTTAGGGCTGGAGCTATTCCATGTGATGACAAGGAGAAGATGCCAAATGATGTTAAACATTTCATAGAAAACACAGAATTAGATGCATTTCAATCAGTTCCATTGAGACATAGACATCCTTGGGAGCTAATAATGGGAAATATTAGTAAAGGCAATGTTTGTGTTGCTGGAGATGCTTTACACCCTATGATGCCTGATCTTGGCCAAGGAGGGTGTTGTGCATTAGAAGATGGGGTGGTTTTAGCGAGGTGTTTAGCTGAGGCTTTTTTGAAGAAACCAAAGGAAGAAGAAGAAGAAGAAGAAGAAGAATACAAAAGGATTGAGGAAGGTTTCAAGAAATATGCAAAGGAGAGAAGATGGAGATGCATTGATCTCATTATTGCAAATTATTTTGTTGGTTCTATTCAGGAAAGTGGTTCAAAATTGGTTAACTTCTTCAGGGATAAAATTTTGGCTACATACTTAGCTAGTCAGTTATTGAAGAAATCTAATTTTGATTGTGGTAAACTAAAAAATAGCCCTTAA
Protein sequence

>Msa1410310

KSCYNWTQGYSPAIDQGYSPTDISYILNLFVMETTKIVEEDIVIVGAGIAGLTTALGLHRLGVRSLVLESSDSLRVTGFALGIWENAWKALDAVGVGDILRHKHIHLYGNVTTSLITGQQLATLSFRDKGKLELRSVRRKLLLEALANELPNDTIRYMSKVVAIEESGFFKILHLVDGTTIKTKVLIGCDGINSVVAKWLGFKEAIYTGRYGIRGFAELENNHSFEPMLMQFYGKGFRVGVVPCHEKGVYWFFTWSPTTQDKELMENPVKLKQYVLNKLENMPSNVRSIIEKTEIDAFHSAPLRYRHPWELIMGNISKGNVCVAGDALHPMTPDLGQGGCLAEALSKKPKEEEEEEKYKRIEEGLKKYANERRWRCIDLITTAYIAGVIQQADSKLVTFFRDKILAPLLAGQLFKKSGFDCGAGIAGLTTSLGLHSLRVSGFALTVWENAWKALDVVGVGDILRHQHLQLHGNVTTSLVMGQQTSSTSFIDNKGKYLEESGFSKILHLVDGTTIKTKVLIGCDGVNSVVAKWLGFNEASYTGRYATRGYAELKTTHKLEPMFMQYFGKGFRAGAIPCDDKEKMPNDVKHFIENTELDAFQSVPLRHRHPWELIMGNISKGNVCVAGDALHPMMPDLGQGGCCALEDGVVLARCLAEAFLKKPKEEEEEEEEEYKRIEEGFKKYAKERRWRCIDLIIANYFVGSIQESGSKLVNFFRDKILATYLASQLLKKSNFDCGKLKNSP*