AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0090870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090870 MtrunA17_Chr1g0211181 92.079 404 16 3 1 391 1 401 0.0 738
Msa0090870 MtrunA17_Chr1g0211181 76.316 152 33 1 391 542 16 164 9.59e-71 233
Msa0090870 MtrunA17_Chr1g0197161 73.201 403 88 3 6 391 4 403 0.0 593
Msa0090870 MtrunA17_Chr1g0197161 83.117 154 24 1 391 542 13 166 1.16e-70 233
Msa0090870 MtrunA17_Chr1g0211141 76.633 398 77 3 7 391 1 395 0.0 589
Msa0090870 MtrunA17_Chr1g0211141 86.184 152 19 1 391 542 9 158 2.96e-74 242
Msa0090870 MtrunA17_Chr1g0211171 74.265 408 86 5 1 391 1 406 0.0 569
Msa0090870 MtrunA17_Chr1g0211171 94.771 153 7 1 391 542 13 165 2.73e-82 263
Msa0090870 MtrunA17_Chr1g0211151 71.358 405 100 4 1 391 1 403 0.0 524
Msa0090870 MtrunA17_Chr1g0211151 83.117 154 21 2 391 542 13 163 4.14e-69 228
Msa0090870 MtrunA17_Chr5g0399671 41.425 379 214 5 2 374 37 413 3.49e-90 284
Msa0090870 MtrunA17_Chr5g0399671 45.752 153 79 3 391 542 50 199 1.51e-32 129
Msa0090870 MtrunA17_Chr5g0399661 39.186 393 228 7 4 388 35 424 1.18e-85 273
Msa0090870 MtrunA17_Chr5g0399661 43.791 153 82 3 391 542 46 195 4.17e-31 125
Msa0090870 MtrunA17_Chr4g0018001 31.633 196 124 3 183 368 18 213 6.59e-27 109
Msa0090870 MtrunA17_Chr4g0017991 39.735 151 69 2 8 156 6 136 5.11e-23 96.7
Msa0090870 MtrunA17_Chr4g0017991 38.095 147 66 2 391 535 13 136 7.00e-21 90.5
Msa0090870 MtrunA17_Chr4g0017951 55.556 72 32 0 7 78 5 76 2.69e-18 79.7
Msa0090870 MtrunA17_Chr4g0017951 56.250 64 28 0 391 454 13 76 9.05e-16 72.4
Msa0090870 MtrunA17_Chr4g0017981 28.846 156 101 3 245 391 1 155 2.77e-14 70.9
Msa0090870 MtrunA17_Chr8g0375081 25.984 381 230 12 11 358 83 444 5.03e-13 72.0
Msa0090870 MtrunA17_Chr5g0402211 27.368 380 244 10 2 358 69 439 9.01e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090870 AT5G05320.1 52.010 398 173 3 9 391 7 401 1.36e-142 418
Msa0090870 AT5G05320.1 51.974 152 70 1 391 542 13 161 1.12e-40 152
Msa0090870 AT4G38540.1 53.885 399 166 3 10 392 8 404 1.14e-134 398
Msa0090870 AT4G38540.1 53.947 152 67 1 391 542 13 161 1.24e-35 138
Msa0090870 AT2G35660.1 38.131 396 224 8 8 390 44 431 1.12e-78 255
Msa0090870 AT2G35660.1 44.444 153 81 3 391 542 51 200 1.39e-30 124
Msa0090870 AT2G29720.1 35.912 362 225 5 21 377 55 414 6.04e-70 232
Msa0090870 AT2G29720.1 43.421 152 80 4 397 547 55 201 4.66e-27 114
Msa0090870 AT4G15760.1 31.579 399 230 7 19 391 39 420 3.14e-59 203
Msa0090870 AT4G15760.1 44.000 150 76 2 395 542 39 182 1.38e-28 118
Msa0090870 AT4G15760.2 31.358 405 235 8 19 391 39 432 3.64e-58 201
Msa0090870 AT4G15760.2 42.308 156 82 2 395 542 39 194 8.80e-29 119
Msa0090870 AT2G35660.2 35.331 317 185 7 87 390 8 317 9.07e-53 183
Msa0090870 AT2G35660.3 35.331 317 185 7 87 390 8 317 9.07e-53 183
Msa0090870 AT4G15765.1 31.104 299 166 5 8 304 3 263 5.74e-38 141
Msa0090870 AT4G15765.2 30.120 166 116 0 139 304 25 190 2.58e-24 101
Msa0090870 AT4G15765.5 30.120 166 116 0 139 304 25 190 2.58e-24 101
Msa0090870 AT4G15765.3 30.120 166 116 0 139 304 25 190 2.58e-24 101
Msa0090870 AT4G15765.4 30.120 166 116 0 139 304 25 190 2.58e-24 101

Find 193 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCAGGGATAAAATTT+TGG 0.116678 1_2:+72966088 Msa0090870:three_prime_UTR
CACAAACATATACATCTTTA+TGG 0.152913 1_2:+72960160 Msa0090870:CDS
CTGGATTTGCTTTAGGAATA+TGG 0.163806 1_2:+72960086 Msa0090870:CDS
GTCAAAGGTTGTTGCTATTC+AGG 0.183324 1_2:+72965048 Msa0090870:CDS
CAAAATTGGTTAACTTCTTC+AGG 0.188159 1_2:+72966075 Msa0090870:three_prime_UTR
TGTGACTACTTCTTTGGTTA+TGG 0.241431 1_2:+72964718 Msa0090870:CDS
GTGACTACTTCTTTGATTAC+AGG 0.261068 1_2:+72960329 Msa0090870:CDS
TCCTCCTCTTCTTCTTCCTT+TGG 0.266684 1_2:-72961882 None:intergenic
TCAGGAAAGTGGTTCAAAAT+TGG 0.273076 1_2:+72966061 Msa0090870:three_prime_UTR
CAGGAATGTGACTACTTCTT+TGG 0.280000 1_2:+72964712 Msa0090870:intron
TCAGCAGGCTGATTCAAAAT+TGG 0.284136 1_2:+72962004 Msa0090870:CDS
GTCATGAGAAAGGTGTTTAC+TGG 0.295235 1_2:+72960995 Msa0090870:CDS
AAAATACTACATCTTGTTGA+TGG 0.306705 1_2:+72960636 Msa0090870:CDS
ATGAAATGTTTAACATCATT+TGG 0.309078 1_2:-72965705 None:intergenic
TATTATTCACCTTGGTTGAT+AGG 0.315579 1_2:-72965341 None:intergenic
GTGATGACAATGGTGTTTAT+TGG 0.317365 1_2:+72965303 Msa0090870:three_prime_UTR
CAGATTGGGCATTGAAAGTT+TGG 0.318004 1_2:+72964338 Msa0090870:intron
ATTACTACAGCTTATATTGC+AGG 0.323766 1_2:+72961975 Msa0090870:CDS
AAAGGCAATGTTTGTGTTGC+TGG 0.327124 1_2:+72965810 Msa0090870:three_prime_UTR
TCAGATAGTTTGAGAGTTAG+TGG 0.330201 1_2:+72964372 Msa0090870:CDS
ACATCCTTGGGAGCTAATAA+TGG 0.330779 1_2:+72965776 Msa0090870:three_prime_UTR
GTTGTTGCTATTCAGGAATC+TGG 0.332949 1_2:+72965055 Msa0090870:CDS
GTGACTACTTCTTTGGTTAT+GGG 0.339346 1_2:+72964719 Msa0090870:CDS
AGAGTAACTGGATTTGCTTT+AGG 0.343106 1_2:+72960079 Msa0090870:CDS
GTAATTGAAAAGGTATTGAT+AGG 0.347467 1_2:+72960805 Msa0090870:intron
TGTGTCACTATTCTAATTAA+CGG 0.348432 1_2:-72966175 None:intergenic
AAAGGAAATGTTTGTGTTGC+TGG 0.349120 1_2:+72961753 Msa0090870:CDS
ATTGTGGGAGCTGGAATTGC+TGG 0.349361 1_2:+72959860 Msa0090870:CDS
TCAGACGCATTGAGAGTAAC+TGG 0.350706 1_2:+72960067 Msa0090870:CDS
ATCAAAACCAAGGTATTGAT+TGG 0.358027 1_2:+72965115 Msa0090870:CDS
CAGGTTAGGTGTAAGAAGTT+TGG 0.359561 1_2:+72960033 Msa0090870:intron
TGGCCAAGATCAGGCATCAT+AGG 0.366278 1_2:-72965846 None:intergenic
ATTGTAGGAGCTGGAATTGC+TGG 0.368049 1_2:+72963271 Msa0090870:intron
ATACAGGTAGATATGGAATC+AGG 0.371596 1_2:+72960884 Msa0090870:CDS
ACATCCTTGGGAGCTCATAA+TGG 0.372312 1_2:+72961719 Msa0090870:CDS
GTTGTTGCTATAGAGGAATC+TGG 0.376223 1_2:+72960606 Msa0090870:CDS
TGGATTTGCTTTAGGAATAT+GGG 0.376418 1_2:+72960087 Msa0090870:CDS
CACCCTATGATGCCTGATCT+TGG 0.380927 1_2:+72965843 Msa0090870:three_prime_UTR
GTCAAAAGTTGTTGCTATAG+AGG 0.386849 1_2:+72960599 Msa0090870:CDS
GCCCGTGAAGTTCGGTGTAT+TGG 0.387505 1_2:+72964965 Msa0090870:CDS
GCCACTTATACAGGTAGATA+TGG 0.388353 1_2:+72960877 Msa0090870:CDS
TGCAAAGTGGTTAGGCTTCA+AGG 0.404806 1_2:+72960852 Msa0090870:CDS
AAAATACTACATCTTGTTGA+TGG 0.405138 1_2:+72965085 Msa0090870:CDS
CACCCCATGACACCTGATCT+TGG 0.406255 1_2:+72961786 Msa0090870:CDS
CACCAACATCTACAACTTCA+TGG 0.407357 1_2:+72964465 Msa0090870:CDS
ACATATTGCTTCAGTTTAGC+AGG 0.408723 1_2:-72961603 None:intergenic
GTGGATTTGCTTTAACGGTA+TGG 0.414647 1_2:+72964391 Msa0090870:CDS
AATATGCAAAGGAGAGAAGA+TGG 0.415258 1_2:+72965994 Msa0090870:three_prime_UTR
CCTATGCTTATGCAGTTCTA+TGG 0.418184 1_2:+72960943 Msa0090870:CDS
TGCTGGCCTCACAACATCCT+TGG 0.420337 1_2:+72963288 Msa0090870:CDS
ACAAACATATACATCTTTAT+GGG 0.420565 1_2:+72960161 Msa0090870:CDS
TTCAAGGAGGCCACTTATAC+AGG 0.423975 1_2:+72960868 Msa0090870:CDS
GGTGCCATTCGGAAGTTCAT+TGG 0.425941 1_2:-72960565 None:intergenic
GATGTATATGTTTGTGGCGG+AGG 0.427623 1_2:-72960153 None:intergenic
TGTTAGAAGGAAGTTATTGT+TGG 0.429771 1_2:+72960533 Msa0090870:CDS
GCTGGCCTTACTACTGCCTT+AGG 0.433010 1_2:+72959878 Msa0090870:CDS
CATCCTTGGGAGCTAATAAT+GGG 0.433653 1_2:+72965777 Msa0090870:three_prime_UTR
TGTTGCAGATAAGGAGCTAA+TGG 0.435214 1_2:+72961575 Msa0090870:intron
ATGATAGATCTAACATTACT+TGG 0.440226 1_2:-72961648 None:intergenic
AGGTGTAAGAAGTTTGGTAT+TGG 0.442419 1_2:+72960039 Msa0090870:CDS
TTCAACGAAGCCTCATACAC+AGG 0.443232 1_2:+72965176 Msa0090870:CDS
TCTGTGGTTGCAAAGTGGTT+AGG 0.443344 1_2:+72960844 Msa0090870:CDS
GGTCAACTATTCAAGAAGTC+TGG 0.446062 1_2:+72962068 Msa0090870:CDS
CATCCTTGGGAGCTCATAAT+GGG 0.446436 1_2:+72961720 Msa0090870:CDS
AGTTAGTGGATTTGCTTTAA+CGG 0.446543 1_2:+72964386 Msa0090870:CDS
AAGAAGAAGAAGAATACAAA+AGG 0.451857 1_2:+72965952 Msa0090870:three_prime_UTR
TGCATATCTCCCTGTGTATG+AGG 0.452906 1_2:-72965186 None:intergenic
TATTGCAGGTGTTATTCAGC+AGG 0.452920 1_2:+72961989 Msa0090870:CDS
AAAATTGGTTAACTTCTTCA+GGG 0.455885 1_2:+72966076 Msa0090870:three_prime_UTR
CCAATGTTCATGCAGTACTT+TGG 0.458036 1_2:+72965251 Msa0090870:three_prime_UTR
GTGAACTACGTAGTGTTAGA+AGG 0.459820 1_2:+72960520 Msa0090870:intron
TAGGAATATGGGAAAATGCT+TGG 0.459941 1_2:+72960098 Msa0090870:CDS
CATTGAGACATAGACATCCT+TGG 0.463494 1_2:+72965763 Msa0090870:three_prime_UTR
AACCTTTGACATGTACCTAA+TGG 0.465605 1_2:-72965035 None:intergenic
CATAAAGATGTATATGTTTG+TGG 0.466768 1_2:-72960159 None:intergenic
GCTGGCCTCACAACATCCTT+GGG 0.467311 1_2:+72963289 Msa0090870:CDS
TGGATTTGCTTTAACGGTAT+GGG 0.467915 1_2:+72964392 Msa0090870:CDS
TGAAGAAGATGTTGTGATTG+TGG 0.469831 1_2:+72959844 Msa0090870:CDS
CACCCTCCTTGGCCAAGATC+AGG 0.471352 1_2:-72965855 None:intergenic
GTTGTAGATGTTGGTGGCGG+AGG 0.473299 1_2:-72964458 None:intergenic
CATTGAGATATAGACATCCT+TGG 0.475442 1_2:+72961706 Msa0090870:CDS
AACTTCCGAATGGCACCATT+AGG 0.475545 1_2:+72960571 Msa0090870:CDS
ATTGAGACATAGACATCCTT+GGG 0.475914 1_2:+72965764 Msa0090870:three_prime_UTR
TAACGGTATGGGAAAATGCT+TGG 0.477745 1_2:+72964403 Msa0090870:CDS
AGCTTCCTAGTGGCACCATT+AGG 0.478225 1_2:+72965020 Msa0090870:CDS
ATAGTGGAGCCCGTGAAGTT+CGG 0.480346 1_2:+72964957 Msa0090870:intron
GGGTGTTGTGCATTAGAAGA+TGG 0.480761 1_2:+72965873 Msa0090870:three_prime_UTR
CTAATGCACAACACCCTCCT+TGG 0.481132 1_2:-72965866 None:intergenic
GGTGTTGTGCATTAGAAGAT+GGG 0.481605 1_2:+72965874 Msa0090870:three_prime_UTR
TCCAATACACCGAACTTCAC+GGG 0.484120 1_2:-72964966 None:intergenic
AATATGCAAATGAAAGAAGA+TGG 0.488104 1_2:+72961937 Msa0090870:CDS
TTCCAATACACCGAACTTCA+CGG 0.489913 1_2:-72964967 None:intergenic
TCCATATCTACCTGTATAAG+TGG 0.491527 1_2:-72960878 None:intergenic
GATGTTGTGATTGTGGGAGC+TGG 0.492828 1_2:+72959851 Msa0090870:CDS
GTTGGTTCTATTCAGGAAAG+TGG 0.496865 1_2:+72966050 Msa0090870:three_prime_UTR
ACCAAAGGAAGAAGAAGAGG+AGG 0.497219 1_2:+72961881 Msa0090870:CDS
GCCTTGGATGCTGTTGGTGT+TGG 0.497974 1_2:+72960124 Msa0090870:CDS
ATTGAGATATAGACATCCTT+GGG 0.500029 1_2:+72961707 Msa0090870:CDS
CAAGGATGTCTATGTCTCAA+TGG 0.503296 1_2:-72965762 None:intergenic
TGACCAAGATCAGGTGTCAT+GGG 0.504386 1_2:-72961789 None:intergenic
GGAGAAATACAAAAGAATTG+AGG 0.506282 1_2:+72961902 Msa0090870:CDS
AGAAGAATACAAAAGGATTG+AGG 0.508059 1_2:+72965959 Msa0090870:three_prime_UTR
AAAACCAAAGGAAGAAGAAG+AGG 0.509176 1_2:+72961878 Msa0090870:CDS
TTTCCCATTATTAGCTCCCA+AGG 0.512250 1_2:-72965780 None:intergenic
CAACATCCTTGGGACTTCAC+AGG 0.512542 1_2:+72963299 Msa0090870:CDS
CTTATGCAGTTCTATGGCAA+AGG 0.512905 1_2:+72960949 Msa0090870:CDS
TATATCTCAATGGAGCTGAA+TGG 0.513754 1_2:-72961695 None:intergenic
CAAGGATGTCTATATCTCAA+TGG 0.515761 1_2:-72961705 None:intergenic
TGGAAAGCCTTGGATGCTGT+TGG 0.518048 1_2:+72960118 Msa0090870:CDS
TATTGGAAGAAATTTATTGT+TGG 0.520538 1_2:+72964982 Msa0090870:CDS
CCAAAGTACTGCATGAACAT+TGG 0.523201 1_2:-72965251 None:intergenic
GGAAAATGCTTGGAAAGCCT+TGG 0.529652 1_2:+72960108 Msa0090870:CDS
GAATACAAAAGGATTGAGGA+AGG 0.529888 1_2:+72965963 Msa0090870:three_prime_UTR
ATAATGGGAAATATTAGTAA+AGG 0.530399 1_2:+72965792 Msa0090870:three_prime_UTR
GGGAATTGACCTTGGGTGGT+AGG 0.531430 1_2:-72961033 None:intergenic
GAAGAAGATGTTGTGATTGT+GGG 0.532692 1_2:+72959845 Msa0090870:CDS
GCGTTGGATGTCGTTGGTGT+TGG 0.533588 1_2:+72964429 Msa0090870:CDS
TGACTACTTCTTTGGTTATG+GGG 0.537353 1_2:+72964720 Msa0090870:CDS
TCAAAACCAAGGTATTGATT+GGG 0.539112 1_2:+72965116 Msa0090870:CDS
TTGACCAAGATCAGGTGTCA+TGG 0.539777 1_2:-72961790 None:intergenic
TTCATGCAGTACTTTGGCAA+AGG 0.540273 1_2:+72965257 Msa0090870:three_prime_UTR
ATCACACCCAATCAATACCT+TGG 0.540531 1_2:-72965122 None:intergenic
ATGTACCTAATGGTGCCATT+CGG 0.542214 1_2:-72960576 None:intergenic
CATTCGGAAGTTCATTGGCA+AGG 0.543968 1_2:-72960560 None:intergenic
TACAGGTAGATATGGAATCA+GGG 0.545908 1_2:+72960885 Msa0090870:CDS
TGGAAGGCGTTGGATGTCGT+TGG 0.546019 1_2:+72964423 Msa0090870:CDS
GGCCAAGATCAGGCATCATA+GGG 0.547689 1_2:-72965845 None:intergenic
GGAAAATGCTTGGAAGGCGT+TGG 0.549027 1_2:+72964413 Msa0090870:CDS
GTGGTACCTGTGAAGTCCTA+AGG 0.549275 1_2:-72959894 None:intergenic
CACTAGGAAGCTCATTGGCA+AGG 0.549520 1_2:-72965009 None:intergenic
AAATACAAAAGAATTGAGGA+AGG 0.551011 1_2:+72961906 Msa0090870:CDS
GTTGTTCCTTGTCATGAGAA+AGG 0.552354 1_2:+72960985 Msa0090870:CDS
TTGTGCATTAGAAGATGGGG+TGG 0.557089 1_2:+72965878 Msa0090870:three_prime_UTR
ATTCGGAAGTTCATTGGCAA+GGG 0.557741 1_2:-72960559 None:intergenic
TCCAACACCAACAGCATCCA+AGG 0.559236 1_2:-72960125 None:intergenic
ACCAACATCTACAACTTCAT+GGG 0.560855 1_2:+72964466 Msa0090870:CDS
GGTGCCACTAGGAAGCTCAT+TGG 0.561305 1_2:-72965014 None:intergenic
AATAGTTGACCAGCTAGTAA+TGG 0.561620 1_2:-72962056 None:intergenic
TTTCCCATTATGAGCTCCCA+AGG 0.564495 1_2:-72961723 None:intergenic
ACTCTGGTGGCAAAGTGGCT+AGG 0.565685 1_2:+72965152 Msa0090870:CDS
GAAGTCCTAAGGCAGTAGTA+AGG 0.567536 1_2:-72959883 None:intergenic
ATGACACCTGATCTTGGTCA+AGG 0.568341 1_2:+72961792 Msa0090870:CDS
CACCATTAGGTACATGTCAA+AGG 0.572299 1_2:+72965033 Msa0090870:CDS
CATATTGCTTCAGTTTAGCA+GGG 0.572399 1_2:-72961602 None:intergenic
TGACACCTGATCTTGGTCAA+GGG 0.574223 1_2:+72961793 Msa0090870:CDS
CTACTGCCTTAGGACTTCAC+AGG 0.574990 1_2:+72959888 Msa0090870:CDS
AAAAGGGAATTGACCTTGGG+TGG 0.578106 1_2:-72961037 None:intergenic
ACTAGGAAGCTCATTGGCAA+GGG 0.580582 1_2:-72965008 None:intergenic
CCATAGAACTGCATAAGCAT+AGG 0.583126 1_2:-72960943 None:intergenic
AAGGTATTGATAGGATGTGA+TGG 0.586088 1_2:+72960814 Msa0090870:intron
AAGGTATTGATTGGGTGTGA+TGG 0.589855 1_2:+72965124 Msa0090870:CDS
TTTAGCGAGGTGTTTAGCTG+AGG 0.590331 1_2:+72965902 Msa0090870:three_prime_UTR
CATGAAGTTGTAGATGTTGG+TGG 0.595074 1_2:-72964464 None:intergenic
ATGATGCCTGATCTTGGCCA+AGG 0.600478 1_2:+72965849 Msa0090870:three_prime_UTR
TGCCTGATCTTGGCCAAGGA+GGG 0.602300 1_2:+72965853 Msa0090870:three_prime_UTR
GACACCTGATCTTGGTCAAG+GGG 0.603675 1_2:+72961794 Msa0090870:CDS
ATAATGGGAAATATTAGCAA+AGG 0.604077 1_2:+72961735 Msa0090870:CDS
ACCCATGAAGTTGTAGATGT+TGG 0.609291 1_2:-72964467 None:intergenic
ACTTGGACTCCTACCACCCA+AGG 0.609702 1_2:+72961024 Msa0090870:CDS
GGTATGGGAAAATGCTTGGA+AGG 0.611682 1_2:+72964407 Msa0090870:CDS
CACAGGGAGATATGCAACGA+GGG 0.613113 1_2:+72965193 Msa0090870:CDS
ACAGGTAGATATGGAATCAG+GGG 0.617290 1_2:+72960886 Msa0090870:CDS
TAAACACCATTGTCATCACA+TGG 0.621023 1_2:-72965299 None:intergenic
GTGTTGTGCATTAGAAGATG+GGG 0.626627 1_2:+72965875 Msa0090870:three_prime_UTR
AGAGTACCTGTGAAGTCCCA+AGG 0.634653 1_2:-72963305 None:intergenic
ATGTACCTAATGGTGCCACT+AGG 0.636331 1_2:-72965025 None:intergenic
AATACAAAAGAATTGAGGAA+GGG 0.636762 1_2:+72961907 Msa0090870:CDS
GGGTGTGATGGAGTAAACTC+TGG 0.636867 1_2:+72965136 Msa0090870:CDS
CTTGCCAATGAACTTCCGAA+TGG 0.638428 1_2:+72960561 Msa0090870:CDS
GACCAAGATCAGGTGTCATG+GGG 0.638652 1_2:-72961788 None:intergenic
TAAACACCTTTCTCATGACA+AGG 0.641474 1_2:-72960991 None:intergenic
CATTGGTTCAAGCTTGTGAG+TGG 0.645311 1_2:-72965234 None:intergenic
CACCTGATCTTGGTCAAGGG+GGG 0.646163 1_2:+72961796 Msa0090870:CDS
AGTAAACTCTGGTGGCAAAG+TGG 0.646669 1_2:+72965147 Msa0090870:CDS
TCAACGAAGCCTCATACACA+GGG 0.655710 1_2:+72965177 Msa0090870:CDS
AGGTTTCAAGAAATATGCAA+AGG 0.658615 1_2:+72965983 Msa0090870:three_prime_UTR
TCAACTCTGTGGTTGCAAAG+TGG 0.661332 1_2:+72960839 Msa0090870:CDS
CTTGCCAATGAGCTTCCTAG+TGG 0.665321 1_2:+72965010 Msa0090870:CDS
ACACCTGATCTTGGTCAAGG+GGG 0.667732 1_2:+72961795 Msa0090870:CDS
GAAGTTGTAGATGTTGGTGG+CGG 0.672083 1_2:-72964461 None:intergenic
ATGCCTGATCTTGGCCAAGG+AGG 0.673847 1_2:+72965852 Msa0090870:three_prime_UTR
AAAGATGTATATGTTTGTGG+CGG 0.679762 1_2:-72960156 None:intergenic
ACGTCTTTCATAGACAACAA+AGG 0.684092 1_2:+72964758 Msa0090870:CDS
TGGAACAACCATCAAAACCA+AGG 0.693752 1_2:+72960656 Msa0090870:CDS
TGGAACAACCATCAAAACCA+AGG 0.693752 1_2:+72965105 Msa0090870:CDS
ACATGGACTCCTATCAACCA+AGG 0.708027 1_2:+72965332 Msa0090870:three_prime_UTR
ACAGGGAGATATGCAACGAG+GGG 0.719732 1_2:+72965194 Msa0090870:CDS
TGTGATGGAGTAAACTCTGG+TGG 0.723192 1_2:+72965139 Msa0090870:CDS
GCTATTCCATGTGATGACAA+TGG 0.728014 1_2:+72965293 Msa0090870:three_prime_UTR
GAAGTCCCAAGGATGTTGTG+AGG 0.766407 1_2:-72963294 None:intergenic
ACACAGGGAGATATGCAACG+AGG 0.767390 1_2:+72965192 Msa0090870:CDS
ATGTGATGGAATCAACTCTG+TGG 0.777353 1_2:+72960828 Msa0090870:CDS
AAAGTGGTTAGGCTTCAAGG+AGG 0.779828 1_2:+72960855 Msa0090870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTAATTTGTTTGTAA+TGG + chr1_2:72959805-72959824 Msa0090870:exon 10.0%
!!! AATATAATTTGTAATTGAAA+AGG + chr1_2:72960795-72960814 Msa0090870:intron 10.0%
!!! AAGTTTGTATTAATTTTTTA+AGG - chr1_2:72962584-72962603 None:intergenic 10.0%
!! TATTCTAATAAAAACTTAAA+AGG + chr1_2:72963196-72963215 Msa0090870:intron 10.0%
!!! TCTAATTAATTTTAAATAGA+AGG + chr1_2:72963487-72963506 Msa0090870:intron 10.0%
!!! CTAATTAATTTTAAATAGAA+GGG + chr1_2:72963488-72963507 Msa0090870:intron 10.0%
!!! TTTTTTGTTTCTTTTTTTTA+AGG - chr1_2:72963541-72963560 None:intergenic 10.0%
!!! CATTTTTATAAGTATTATTA+AGG - chr1_2:72963673-72963692 None:intergenic 10.0%
!!! TTTTCATTTATATAAATATG+GGG - chr1_2:72963808-72963827 None:intergenic 10.0%
!!! GATTTTCATTTATATAAATA+TGG - chr1_2:72963810-72963829 None:intergenic 10.0%
!!! TAATTTGATTTTTAAAACAT+TGG - chr1_2:72965407-72965426 None:intergenic 10.0%
!!! TTATTTTCTAGATTAATAAT+CGG - chr1_2:72965591-72965610 None:intergenic 10.0%
!! TAATATTAAAAACACTAAGT+TGG - chr1_2:72960201-72960220 None:intergenic 15.0%
!!! CTTTATAAGTCAATTTTATA+GGG + chr1_2:72961212-72961231 Msa0090870:intron 15.0%
!!! AAAATTGGTTACATTTTTTA+GGG + chr1_2:72962019-72962038 Msa0090870:CDS 15.0%
!!! CTTATTTTTTTAATCAAAGT+TGG - chr1_2:72962712-72962731 None:intergenic 15.0%
!! TAAATATCTTGAAGTTTAAT+TGG - chr1_2:72962905-72962924 None:intergenic 15.0%
!! AGAAGTTTCTATATATAATT+GGG - chr1_2:72963108-72963127 None:intergenic 15.0%
!! TAGAATAGAAATATATAGAA+TGG - chr1_2:72963183-72963202 None:intergenic 15.0%
!!! ACTTTTAAGGAAAAAATATT+TGG + chr1_2:72963603-72963622 Msa0090870:intron 15.0%
!! TTTCATTTATATAAATATGG+GGG - chr1_2:72963807-72963826 None:intergenic 15.0%
!! ATCCATATATAATAAAATAG+AGG - chr1_2:72964864-72964883 None:intergenic 15.0%
!!! ATTATTGCAAATTATTTTGT+TGG + chr1_2:72966032-72966051 Msa0090870:three_prime_UTR 15.0%
!! ACAAACATATACATCTTTAT+GGG + chr1_2:72960161-72960180 Msa0090870:CDS 20.0%
!! GTAATTCTTGATATATATGT+TGG - chr1_2:72960452-72960471 None:intergenic 20.0%
!! TTCAACATGCTTAAAAAAAA+GGG - chr1_2:72961056-72961075 None:intergenic 20.0%
!! TTTCAACATGCTTAAAAAAA+AGG - chr1_2:72961057-72961076 None:intergenic 20.0%
!!! AAAATTGACTTATAAAGCAA+GGG - chr1_2:72961209-72961228 None:intergenic 20.0%
!!! TAAAATTGACTTATAAAGCA+AGG - chr1_2:72961210-72961229 None:intergenic 20.0%
!!! GCTTTATAAGTCAATTTTAT+AGG + chr1_2:72961211-72961230 Msa0090870:intron 20.0%
!!! CTTATTTCTTAACACTTTTT+AGG - chr1_2:72961389-72961408 None:intergenic 20.0%
!!! ATCTATAAAATTGACTTGTA+AGG - chr1_2:72961435-72961454 None:intergenic 20.0%
!!! CAAAATTGGTTACATTTTTT+AGG + chr1_2:72962018-72962037 Msa0090870:CDS 20.0%
!!! ATTTTTTAGGGACAAAATTT+TGG + chr1_2:72962031-72962050 Msa0090870:CDS 20.0%
!! TGTGTTTAGATAATTATACA+AGG - chr1_2:72962141-72962160 None:intergenic 20.0%
!! AACGACATTTAAAAAGAAAT+CGG - chr1_2:72962372-72962391 None:intergenic 20.0%
!! TTATAAAAGTTGTCACAAAA+TGG - chr1_2:72962441-72962460 None:intergenic 20.0%
!! TGACAATTAAAAAAGAACAT+AGG + chr1_2:72962645-72962664 Msa0090870:intron 20.0%
!! AAAGTTGTTAAAATAACGTA+TGG + chr1_2:72963011-72963030 Msa0090870:intron 20.0%
!! GAGAAGTTTCTATATATAAT+TGG - chr1_2:72963109-72963128 None:intergenic 20.0%
!!! GTAATAAAGACAAACTTTTA+AGG + chr1_2:72963590-72963609 Msa0090870:intron 20.0%
!! AAATGAAAATCACACATAAA+TGG + chr1_2:72963819-72963838 Msa0090870:intron 20.0%
!! CTTAGTTTAAATCTTACATA+TGG - chr1_2:72964231-72964250 None:intergenic 20.0%
!! GTAAGATTTAAACTAAGTTT+AGG + chr1_2:72964234-72964253 Msa0090870:intron 20.0%
!!! CATTTTTAGAAAATGTAGTA+GGG - chr1_2:72964516-72964535 None:intergenic 20.0%
!!! TCATTTTTAGAAAATGTAGT+AGG - chr1_2:72964517-72964536 None:intergenic 20.0%
!!! TTTATATAACTGACTCTTTA+GGG - chr1_2:72964558-72964577 None:intergenic 20.0%
!!! TTTTATATAACTGACTCTTT+AGG - chr1_2:72964559-72964578 None:intergenic 20.0%
!!! TGCCTCTATTTTATTATATA+TGG + chr1_2:72964859-72964878 Msa0090870:intron 20.0%
!! CTTCATATCAAATTTAAGAA+CGG - chr1_2:72964909-72964928 None:intergenic 20.0%
!! TATTGGAAGAAATTTATTGT+TGG + chr1_2:72964982-72965001 Msa0090870:CDS 20.0%
!! ATTTGTATATGCAAAAGAAA+GGG - chr1_2:72965367-72965386 None:intergenic 20.0%
!! AATTTGTATATGCAAAAGAA+AGG - chr1_2:72965368-72965387 None:intergenic 20.0%
!! AAAATCAAATTAGAGAATGA+CGG + chr1_2:72965415-72965434 Msa0090870:intron 20.0%
!! TAAAAATAAAGAATGTCAAG+TGG + chr1_2:72965506-72965525 Msa0090870:intron 20.0%
!! CAACCAATCTAAATTATAAT+CGG + chr1_2:72965532-72965551 Msa0090870:intron 20.0%
!! AACCAATCTAAATTATAATC+GGG + chr1_2:72965533-72965552 Msa0090870:intron 20.0%
!! ATGAAATGTTTAACATCATT+TGG - chr1_2:72965708-72965727 None:intergenic 20.0%
!!! ATAATGGGAAATATTAGTAA+AGG + chr1_2:72965792-72965811 Msa0090870:three_prime_UTR 20.0%
!!! AAGAAATCTAATTTTGATTG+TGG + chr1_2:72966137-72966156 Msa0090870:three_prime_UTR 20.0%
! TGAAGAGAATAGAATTGAAA+AGG - chr1_2:72959923-72959942 None:intergenic 25.0%
! TACATATTCCTTATTATCGA+TGG + chr1_2:72960010-72960029 Msa0090870:intron 25.0%
! CATAAAGATGTATATGTTTG+TGG - chr1_2:72960162-72960181 None:intergenic 25.0%
! CACAAACATATACATCTTTA+TGG + chr1_2:72960160-72960179 Msa0090870:CDS 25.0%
!! TGAAACTAAAGTACTTGAAT+CGG + chr1_2:72960296-72960315 Msa0090870:intron 25.0%
!! AATTAGCAACTATGTCTTTT+AGG + chr1_2:72960357-72960376 Msa0090870:CDS 25.0%
!! ATTAGCAACTATGTCTTTTA+GGG + chr1_2:72960358-72960377 Msa0090870:CDS 25.0%
! AAAATACTACATCTTGTTGA+TGG + chr1_2:72960636-72960655 Msa0090870:CDS 25.0%
!!! GTAATTGAAAAGGTATTGAT+AGG + chr1_2:72960805-72960824 Msa0090870:intron 25.0%
! CTTAATACAAGCAACAAATA+AGG - chr1_2:72961108-72961127 None:intergenic 25.0%
! CAAAGAAACTTCTTAAAATG+TGG - chr1_2:72961474-72961493 None:intergenic 25.0%
! TTGATGAATTAACATGACAA+TGG - chr1_2:72961546-72961565 None:intergenic 25.0%
! ATGATAGATCTAACATTACT+TGG - chr1_2:72961651-72961670 None:intergenic 25.0%
!! ATAATGGGAAATATTAGCAA+AGG + chr1_2:72961735-72961754 Msa0090870:CDS 25.0%
! AAATACAAAAGAATTGAGGA+AGG + chr1_2:72961906-72961925 Msa0090870:CDS 25.0%
! AATACAAAAGAATTGAGGAA+GGG + chr1_2:72961907-72961926 Msa0090870:CDS 25.0%
! AATATGCAAATGAAAGAAGA+TGG + chr1_2:72961937-72961956 Msa0090870:CDS 25.0%
! TAGTGAAGAAAGAAAACTAT+TGG - chr1_2:72962222-72962241 None:intergenic 25.0%
! ACGACATTTAAAAAGAAATC+GGG - chr1_2:72962371-72962390 None:intergenic 25.0%
! AAGAAAAGTAGATATTGACA+TGG - chr1_2:72962505-72962524 None:intergenic 25.0%
! ACACACACAATTAAACTTTA+TGG - chr1_2:72962783-72962802 None:intergenic 25.0%
! ATGACATGGTATAAAATGAT+CGG - chr1_2:72962813-72962832 None:intergenic 25.0%
! AGTTACATAAAAACATGACA+TGG - chr1_2:72962827-72962846 None:intergenic 25.0%
! TCATGAAATGAAATTACTGT+TGG + chr1_2:72963041-72963060 Msa0090870:intron 25.0%
! TTCTATATATAATTGGGCAA+AGG - chr1_2:72963102-72963121 None:intergenic 25.0%
! TTATATATAGAAACTTCTCG+CGG + chr1_2:72963110-72963129 Msa0090870:intron 25.0%
! GAAAAAGATATTGTGATTGT+AGG + chr1_2:72963256-72963275 Msa0090870:intron 25.0%
!! AATATTTGGAATGATGAAAG+TGG + chr1_2:72963617-72963636 Msa0090870:intron 25.0%
!! ATATTTGGAATGATGAAAGT+GGG + chr1_2:72963618-72963637 Msa0090870:intron 25.0%
! AATGAGTGTAAATAATCAAG+TGG + chr1_2:72963689-72963708 Msa0090870:intron 25.0%
!! TGCACCTTAATAATTTTAGA+TGG + chr1_2:72963728-72963747 Msa0090870:intron 25.0%
!! GCACCTTAATAATTTTAGAT+GGG + chr1_2:72963729-72963748 Msa0090870:intron 25.0%
!! ACACCCATCTAAAATTATTA+AGG - chr1_2:72963735-72963754 None:intergenic 25.0%
! CAAAAATGATCGTAAATACT+TGG - chr1_2:72964130-72964149 None:intergenic 25.0%
! ATTACTATCAATCATATGCA+TGG - chr1_2:72964307-72964326 None:intergenic 25.0%
!! TAATATTGATGATTGCAGAT+TGG + chr1_2:72964323-72964342 Msa0090870:intron 25.0%
!! AATATTGATGATTGCAGATT+GGG + chr1_2:72964324-72964343 Msa0090870:intron 25.0%
! GATGTGAAAATGTTCATAAA+TGG - chr1_2:72964613-72964632 None:intergenic 25.0%
! TGAAACGAAATAACTTGAAT+TGG + chr1_2:72964685-72964704 Msa0090870:intron 25.0%
! ATACCATTGTTAATATGTAG+AGG + chr1_2:72964882-72964901 Msa0090870:intron 25.0%
! TAGCATAAAAACATACATCA+TGG - chr1_2:72964938-72964957 None:intergenic 25.0%
!!! TGTATGTTTTTATGCTATAG+TGG + chr1_2:72964941-72964960 Msa0090870:intron 25.0%
! AAAATACTACATCTTGTTGA+TGG + chr1_2:72960636-72960655 Msa0090870:CDS 25.0%
! GAACAAATTGAATCATGATT+AGG - chr1_2:72965449-72965468 None:intergenic 25.0%
!! CATGATTCAATTTGTTCAAA+CGG + chr1_2:72965452-72965471 Msa0090870:intron 25.0%
! ATCCCGATTATAATTTAGAT+TGG - chr1_2:72965538-72965557 None:intergenic 25.0%
! GATTAATAATCGGATTGAAT+CGG - chr1_2:72965581-72965600 None:intergenic 25.0%
!!! CATATTGTTTTAGTTTAGCA+GGG - chr1_2:72965662-72965681 None:intergenic 25.0%
!!! ACATATTGTTTTAGTTTAGC+AGG - chr1_2:72965663-72965682 None:intergenic 25.0%
! AAGAAGAAGAAGAATACAAA+AGG + chr1_2:72965952-72965971 Msa0090870:three_prime_UTR 25.0%
!!! TTATTTTGTTGGTTCTATTC+AGG + chr1_2:72966043-72966062 Msa0090870:three_prime_UTR 25.0%
! AAAATTGGTTAACTTCTTCA+GGG + chr1_2:72966076-72966095 Msa0090870:three_prime_UTR 25.0%
!! TGTGTCACTATTCTAATTAA+CGG - chr1_2:72966178-72966197 None:intergenic 25.0%
AATAGAATTGAAAAGGTAGG+TGG - chr1_2:72959916-72959935 None:intergenic 30.0%
GAGAATAGAATTGAAAAGGT+AGG - chr1_2:72959919-72959938 None:intergenic 30.0%
!! TGGATTTGCTTTAGGAATAT+GGG + chr1_2:72960087-72960106 Msa0090870:CDS 30.0%
AAAGATGTATATGTTTGTGG+CGG - chr1_2:72960159-72960178 None:intergenic 30.0%
! GAAACTAAAGTACTTGAATC+GGG + chr1_2:72960297-72960316 Msa0090870:intron 30.0%
TGTTAGAAGGAAGTTATTGT+TGG + chr1_2:72960533-72960552 Msa0090870:CDS 30.0%
! AACTTTTGACATGTACCTAA+TGG - chr1_2:72960589-72960608 None:intergenic 30.0%
!!! ATTGTTTACCTTGGTTTTGA+TGG - chr1_2:72960667-72960686 None:intergenic 30.0%
GTCACAAATATTGTTTACCT+TGG - chr1_2:72960676-72960695 None:intergenic 30.0%
AAAAAAAGGGAATTGACCTT+GGG - chr1_2:72961043-72961062 None:intergenic 30.0%
AAAAAAAAGGGAATTGACCT+TGG - chr1_2:72961044-72961063 None:intergenic 30.0%
GTACCAAATCGAACAAAATA+TGG + chr1_2:72961141-72961160 Msa0090870:intron 30.0%
! TGACCATATTTTGTTCGATT+TGG - chr1_2:72961147-72961166 None:intergenic 30.0%
! AAGTGTCTCTAGAAAAAAGA+AGG - chr1_2:72961186-72961205 None:intergenic 30.0%
ACTATCTTCGAATTTGGATT+TGG - chr1_2:72961248-72961267 None:intergenic 30.0%
TCTGATACTATCTTCGAATT+TGG - chr1_2:72961254-72961273 None:intergenic 30.0%
TTCAATAACATGTGCTTCAA+TGG - chr1_2:72961290-72961309 None:intergenic 30.0%
ATTGAGATATAGACATCCTT+GGG + chr1_2:72961707-72961726 Msa0090870:CDS 30.0%
!!! TTCTTCTTCCTTTGGTTTTT+TGG - chr1_2:72961877-72961896 None:intergenic 30.0%
GGAGAAATACAAAAGAATTG+AGG + chr1_2:72961902-72961921 Msa0090870:CDS 30.0%
ATTACTACAGCTTATATTGC+AGG + chr1_2:72961975-72961994 Msa0090870:CDS 30.0%
ACAACTCAAATTCATTACCA+CGG - chr1_2:72962182-72962201 None:intergenic 30.0%
GACATTTAAAAAGAAATCGG+GGG - chr1_2:72962369-72962388 None:intergenic 30.0%
CGACATTTAAAAAGAAATCG+GGG - chr1_2:72962370-72962389 None:intergenic 30.0%
! TAAATGTCGTTTGTAAGCAA+AGG + chr1_2:72962381-72962400 Msa0090870:intron 30.0%
TCATTTGTGAGACAATGTTT+AGG - chr1_2:72962545-72962564 None:intergenic 30.0%
!! TTAATCAAAGTTGGTGTTCA+TGG - chr1_2:72962703-72962722 None:intergenic 30.0%
AAATCAAAGGTGAACACAAA+CGG + chr1_2:72962754-72962773 Msa0090870:intron 30.0%
GACATATGCATTTACAGTAT+TGG + chr1_2:72962950-72962969 Msa0090870:intron 30.0%
GTGAGCTATATACTTAGTAA+TGG + chr1_2:72963222-72963241 Msa0090870:intron 30.0%
!! ACTTGCACCTTATTGTTTTT+AGG - chr1_2:72963764-72963783 None:intergenic 30.0%
AAAAGACAATGACATGCTTA+AGG + chr1_2:72963557-72963576 Msa0090870:intron 30.0%
GTAAATAATCAAGTGGATGT+AGG + chr1_2:72963696-72963715 Msa0090870:intron 30.0%
TATCATCCAAAAAGACTTAG+CGG - chr1_2:72963869-72963888 None:intergenic 30.0%
ATGAGATATTACTCTGCTAT+TGG + chr1_2:72963924-72963943 Msa0090870:intron 30.0%
! ATTTTCACGACAAATTTAGC+TGG + chr1_2:72964160-72964179 Msa0090870:intron 30.0%
!! AGTTAGTGGATTTGCTTTAA+CGG + chr1_2:72964386-72964405 Msa0090870:CDS 30.0%
!! TTTTAGAAAATGTAGTAGGG+AGG - chr1_2:72964513-72964532 None:intergenic 30.0%
!!! AATCAATACCTTGGTTTTGA+TGG - chr1_2:72965116-72965135 None:intergenic 30.0%
!! ATCAAAACCAAGGTATTGAT+TGG + chr1_2:72965115-72965134 Msa0090870:CDS 30.0%
!! TCAAAACCAAGGTATTGATT+GGG + chr1_2:72965116-72965135 Msa0090870:CDS 30.0%
!!! GTGTTTATTGGTTTTTCACA+TGG + chr1_2:72965315-72965334 Msa0090870:three_prime_UTR 30.0%
TATTATTCACCTTGGTTGAT+AGG - chr1_2:72965344-72965363 None:intergenic 30.0%
CAAATTGAATCATGATTAGG+TGG - chr1_2:72965446-72965465 None:intergenic 30.0%
TAACTCTTTATCTGTAAGAC+AGG - chr1_2:72965631-72965650 None:intergenic 30.0%
AGAAGAATACAAAAGGATTG+AGG + chr1_2:72965959-72965978 Msa0090870:three_prime_UTR 30.0%
AGGTTTCAAGAAATATGCAA+AGG + chr1_2:72965983-72966002 Msa0090870:three_prime_UTR 30.0%
CAAAATTGGTTAACTTCTTC+AGG + chr1_2:72966075-72966094 Msa0090870:three_prime_UTR 30.0%
! CTTCTTCAGGGATAAAATTT+TGG + chr1_2:72966088-72966107 Msa0090870:three_prime_UTR 30.0%
TGAAGAAGATGTTGTGATTG+TGG + chr1_2:72959844-72959863 Msa0090870:CDS 35.0%
GAAGAAGATGTTGTGATTGT+GGG + chr1_2:72959845-72959864 Msa0090870:CDS 35.0%
TATTCCTTATTATCGATGGC+AGG + chr1_2:72960014-72960033 Msa0090870:intron 35.0%
AGGTGTAAGAAGTTTGGTAT+TGG + chr1_2:72960039-72960058 Msa0090870:CDS 35.0%
! AGAGTAACTGGATTTGCTTT+AGG + chr1_2:72960079-72960098 Msa0090870:CDS 35.0%
!! CTGGATTTGCTTTAGGAATA+TGG + chr1_2:72960086-72960105 Msa0090870:CDS 35.0%
TAGGAATATGGGAAAATGCT+TGG + chr1_2:72960098-72960117 Msa0090870:CDS 35.0%
GTGACTACTTCTTTGATTAC+AGG + chr1_2:72960329-72960348 Msa0090870:CDS 35.0%
!! ACTATGTCTTTTAGGGACAA+AGG + chr1_2:72960365-72960384 Msa0090870:CDS 35.0%
! GATTCTTGTTATGATGAGTG+TGG + chr1_2:72960480-72960499 Msa0090870:intron 35.0%
GTCAAAAGTTGTTGCTATAG+AGG + chr1_2:72960599-72960618 Msa0090870:CDS 35.0%
!! AAGGTATTGATAGGATGTGA+TGG + chr1_2:72960814-72960833 Msa0090870:intron 35.0%
TCCATATCTACCTGTATAAG+TGG - chr1_2:72960881-72960900 None:intergenic 35.0%
ATACAGGTAGATATGGAATC+AGG + chr1_2:72960884-72960903 Msa0090870:CDS 35.0%
TACAGGTAGATATGGAATCA+GGG + chr1_2:72960885-72960904 Msa0090870:CDS 35.0%
TAAACACCTTTCTCATGACA+AGG - chr1_2:72960994-72961013 None:intergenic 35.0%
!!! GTGTTTACTGGTTTTTCACT+TGG + chr1_2:72961007-72961026 Msa0090870:CDS 35.0%
TTCATTGTTTCGATCCAGAA+TGG + chr1_2:72961082-72961101 Msa0090870:intron 35.0%
!! CTCTAAAATGTTCAGTCCTA+AGG + chr1_2:72961324-72961343 Msa0090870:intron 35.0%
TAAAATGTTCAGTCCTAAGG+AGG + chr1_2:72961327-72961346 Msa0090870:intron 35.0%
CATATTGCTTCAGTTTAGCA+GGG - chr1_2:72961605-72961624 None:intergenic 35.0%
ACATATTGCTTCAGTTTAGC+AGG - chr1_2:72961606-72961625 None:intergenic 35.0%
TATATCTCAATGGAGCTGAA+TGG - chr1_2:72961698-72961717 None:intergenic 35.0%
CAAGGATGTCTATATCTCAA+TGG - chr1_2:72961708-72961727 None:intergenic 35.0%
CATTGAGATATAGACATCCT+TGG + chr1_2:72961706-72961725 Msa0090870:CDS 35.0%
AAAGGAAATGTTTGTGTTGC+TGG + chr1_2:72961753-72961772 Msa0090870:CDS 35.0%
!!! TTCCTTTGGTTTTTTGGACA+AGG - chr1_2:72961871-72961890 None:intergenic 35.0%
AAAACCAAAGGAAGAAGAAG+AGG + chr1_2:72961878-72961897 Msa0090870:CDS 35.0%
AATAGTTGACCAGCTAGTAA+TGG - chr1_2:72962059-72962078 None:intergenic 35.0%
!!! AAGAAGTCTGGTTTTGATTG+TGG + chr1_2:72962080-72962099 Msa0090870:CDS 35.0%
CTCAATTAGCCCTTAATTAG+TGG + chr1_2:72962107-72962126 Msa0090870:intron 35.0%
! GTAAGTGTGCCACTAATTAA+GGG - chr1_2:72962119-72962138 None:intergenic 35.0%
! ATGATGATGATGAGCAAAGT+TGG + chr1_2:72962249-72962268 Msa0090870:intron 35.0%
GATGTGTAAGGTTGTAATCA+AGG + chr1_2:72962271-72962290 Msa0090870:intron 35.0%
TTGGCACTATGATATATCAG+TGG + chr1_2:72963060-72963079 Msa0090870:intron 35.0%
ATATAATTGGGCAAAGGTCA+AGG - chr1_2:72963096-72963115 None:intergenic 35.0%
ACACCCACCTAAAAACAATA+AGG + chr1_2:72963407-72963426 Msa0090870:intron 35.0%
!!! GCACCTTATTGTTTTTAGGT+GGG - chr1_2:72963768-72963787 None:intergenic 35.0%
!!! TGCACCTTATTGTTTTTAGG+TGG - chr1_2:72963767-72963786 None:intergenic 35.0%
AAGTGGGTGTAAATTAGTGA+AGG + chr1_2:72963634-72963653 Msa0090870:intron 35.0%
GAAAATCACACATAAATGGC+AGG + chr1_2:72963823-72963842 Msa0090870:intron 35.0%
TGCTATTGGTGCAAGTATTT+AGG + chr1_2:72963938-72963957 Msa0090870:intron 35.0%
! AAGTATTTAGGACTCCACTT+TGG + chr1_2:72963950-72963969 Msa0090870:intron 35.0%
!!! ATTTAGCTGGCTAGTTTTAG+TGG + chr1_2:72964173-72964192 Msa0090870:intron 35.0%
!!! TTTAGCTGGCTAGTTTTAGT+GGG + chr1_2:72964174-72964193 Msa0090870:intron 35.0%
TCAGATAGTTTGAGAGTTAG+TGG + chr1_2:72964372-72964391 Msa0090870:CDS 35.0%
! TGGATTTGCTTTAACGGTAT+GGG + chr1_2:72964392-72964411 Msa0090870:CDS 35.0%
ACCAACATCTACAACTTCAT+GGG + chr1_2:72964466-72964485 Msa0090870:CDS 35.0%
TCAGGTCATCTTAAAGAATG+AGG - chr1_2:72964652-72964671 None:intergenic 35.0%
AATAACTTGAATTGGAGTGC+AGG + chr1_2:72964693-72964712 Msa0090870:intron 35.0%
TGTGACTACTTCTTTGGTTA+TGG + chr1_2:72964718-72964737 Msa0090870:CDS 35.0%
GTGACTACTTCTTTGGTTAT+GGG + chr1_2:72964719-72964738 Msa0090870:CDS 35.0%
TGACTACTTCTTTGGTTATG+GGG + chr1_2:72964720-72964739 Msa0090870:CDS 35.0%
ACGTCTTTCATAGACAACAA+AGG + chr1_2:72964758-72964777 Msa0090870:CDS 35.0%
GGTCCTCTACATATTAACAA+TGG - chr1_2:72964888-72964907 None:intergenic 35.0%
AACCTTTGACATGTACCTAA+TGG - chr1_2:72965038-72965057 None:intergenic 35.0%
! AGTACTTTGGCAAAGGTTTT+AGG + chr1_2:72965264-72965283 Msa0090870:three_prime_UTR 35.0%
! GTACTTTGGCAAAGGTTTTA+GGG + chr1_2:72965265-72965284 Msa0090870:three_prime_UTR 35.0%
TAAACACCATTGTCATCACA+TGG - chr1_2:72965302-72965321 None:intergenic 35.0%
GTGATGACAATGGTGTTTAT+TGG + chr1_2:72965303-72965322 Msa0090870:three_prime_UTR 35.0%
!! AGAAAGGGTATTATTCACCT+TGG - chr1_2:72965352-72965371 None:intergenic 35.0%
ATTGAGACATAGACATCCTT+GGG + chr1_2:72965764-72965783 Msa0090870:three_prime_UTR 35.0%
!!! GGCTTTTTTGAAGAAACCAA+AGG + chr1_2:72965923-72965942 Msa0090870:three_prime_UTR 35.0%
TCTTCTTCTTCTTCTTCCTT+TGG - chr1_2:72965942-72965961 None:intergenic 35.0%
GAATACAAAAGGATTGAGGA+AGG + chr1_2:72965963-72965982 Msa0090870:three_prime_UTR 35.0%
AATATGCAAAGGAGAGAAGA+TGG + chr1_2:72965994-72966013 Msa0090870:three_prime_UTR 35.0%
TCAGGAAAGTGGTTCAAAAT+TGG + chr1_2:72966061-72966080 Msa0090870:three_prime_UTR 35.0%
CTAACCTGCCATCGATAATA+AGG - chr1_2:72960021-72960040 None:intergenic 40.0%
CTTATTATCGATGGCAGGTT+AGG + chr1_2:72960019-72960038 Msa0090870:intron 40.0%
CAGGTTAGGTGTAAGAAGTT+TGG + chr1_2:72960033-72960052 Msa0090870:intron 40.0%
GTGAACTACGTAGTGTTAGA+AGG + chr1_2:72960520-72960539 Msa0090870:intron 40.0%
ATTCGGAAGTTCATTGGCAA+GGG - chr1_2:72960562-72960581 None:intergenic 40.0%
!! ATGTACCTAATGGTGCCATT+CGG - chr1_2:72960579-72960598 None:intergenic 40.0%
GTTGTTGCTATAGAGGAATC+TGG + chr1_2:72960606-72960625 Msa0090870:CDS 40.0%
TGGAACAACCATCAAAACCA+AGG + chr1_2:72960656-72960675 Msa0090870:CDS 40.0%
! ATGTGATGGAATCAACTCTG+TGG + chr1_2:72960828-72960847 Msa0090870:CDS 40.0%
GCCACTTATACAGGTAGATA+TGG + chr1_2:72960877-72960896 Msa0090870:CDS 40.0%
ACAGGTAGATATGGAATCAG+GGG + chr1_2:72960886-72960905 Msa0090870:CDS 40.0%
CCATAGAACTGCATAAGCAT+AGG - chr1_2:72960946-72960965 None:intergenic 40.0%
CCTATGCTTATGCAGTTCTA+TGG + chr1_2:72960943-72960962 Msa0090870:CDS 40.0%
CTTATGCAGTTCTATGGCAA+AGG + chr1_2:72960949-72960968 Msa0090870:CDS 40.0%
!!! TATGGCAAAGGTTTTAGAGC+TGG + chr1_2:72960961-72960980 Msa0090870:CDS 40.0%
GTTGTTCCTTGTCATGAGAA+AGG + chr1_2:72960985-72961004 Msa0090870:CDS 40.0%
!! GTCATGAGAAAGGTGTTTAC+TGG + chr1_2:72960995-72961014 Msa0090870:CDS 40.0%
AGCAACAAATAAGGCCATTC+TGG - chr1_2:72961099-72961118 None:intergenic 40.0%
ACATGTGCTTCAATGGATCT+TGG - chr1_2:72961283-72961302 None:intergenic 40.0%
!! CTTGACTTGTGTTGCAGATA+AGG + chr1_2:72961566-72961585 Msa0090870:intron 40.0%
TGTTGCAGATAAGGAGCTAA+TGG + chr1_2:72961575-72961594 Msa0090870:intron 40.0%
! AGCCTTGTCCAAAAAACCAA+AGG + chr1_2:72961866-72961885 Msa0090870:CDS 40.0%
!! TATTGCAGGTGTTATTCAGC+AGG + chr1_2:72961989-72962008 Msa0090870:CDS 40.0%
! TCAGCAGGCTGATTCAAAAT+TGG + chr1_2:72962004-72962023 Msa0090870:CDS 40.0%
!!! ATTTTGGCTCCATTACTAGC+TGG + chr1_2:72962047-72962066 Msa0090870:CDS 40.0%
GGTCAACTATTCAAGAAGTC+TGG + chr1_2:72962068-72962087 Msa0090870:CDS 40.0%
! GGTAAGTGTGCCACTAATTA+AGG - chr1_2:72962120-72962139 None:intergenic 40.0%
TGAGCAAAGTTGGATGTGTA+AGG + chr1_2:72962259-72962278 Msa0090870:intron 40.0%
GCTATAGGTAAGGATGATGA+TGG - chr1_2:72963150-72963169 None:intergenic 40.0%
!! ACAGAAGCTTGCTATAGGTA+AGG - chr1_2:72963160-72963179 None:intergenic 40.0%
!! AATGGACAGAAGCTTGCTAT+AGG - chr1_2:72963165-72963184 None:intergenic 40.0%
GATATTGTGATTGTAGGAGC+TGG + chr1_2:72963262-72963281 Msa0090870:intron 40.0%
ACACATAAATGGCAGGTAAG+CGG + chr1_2:72963830-72963849 Msa0090870:intron 40.0%
TCTCGTGAACACGACATTTA+TGG + chr1_2:72963897-72963916 Msa0090870:intron 40.0%
ATACTTCAGTGCCATAGCAA+TGG - chr1_2:72964104-72964123 None:intergenic 40.0%
!! CAGATTGGGCATTGAAAGTT+TGG + chr1_2:72964338-72964357 Msa0090870:intron 40.0%
! GTGGATTTGCTTTAACGGTA+TGG + chr1_2:72964391-72964410 Msa0090870:CDS 40.0%
TAACGGTATGGGAAAATGCT+TGG + chr1_2:72964403-72964422 Msa0090870:CDS 40.0%
CATGAAGTTGTAGATGTTGG+TGG - chr1_2:72964467-72964486 None:intergenic 40.0%
CACCAACATCTACAACTTCA+TGG + chr1_2:72964465-72964484 Msa0090870:CDS 40.0%
ACCCATGAAGTTGTAGATGT+TGG - chr1_2:72964470-72964489 None:intergenic 40.0%
TATTTCGTTTCAGCCTCTCT+TGG - chr1_2:72964677-72964696 None:intergenic 40.0%
CAGGAATGTGACTACTTCTT+TGG + chr1_2:72960322-72960341 Msa0090870:intron 40.0%
TTCCAATACACCGAACTTCA+CGG - chr1_2:72964970-72964989 None:intergenic 40.0%
CACCATTAGGTACATGTCAA+AGG + chr1_2:72960584-72960603 Msa0090870:CDS 40.0%
! GTCAAAGGTTGTTGCTATTC+AGG + chr1_2:72965048-72965067 Msa0090870:CDS 40.0%
! GTTGTTGCTATTCAGGAATC+TGG + chr1_2:72965055-72965074 Msa0090870:CDS 40.0%
TGGAACAACCATCAAAACCA+AGG + chr1_2:72960656-72960675 Msa0090870:CDS 40.0%
ATCACACCCAATCAATACCT+TGG - chr1_2:72965125-72965144 None:intergenic 40.0%
!! AAGGTATTGATTGGGTGTGA+TGG + chr1_2:72965124-72965143 Msa0090870:CDS 40.0%
!! CCAAAGTACTGCATGAACAT+TGG - chr1_2:72965254-72965273 None:intergenic 40.0%
CCAATGTTCATGCAGTACTT+TGG + chr1_2:72965251-72965270 Msa0090870:three_prime_UTR 40.0%
TTCATGCAGTACTTTGGCAA+AGG + chr1_2:72965257-72965276 Msa0090870:three_prime_UTR 40.0%
GCTATTCCATGTGATGACAA+TGG + chr1_2:72965293-72965312 Msa0090870:three_prime_UTR 40.0%
GATCAAATCAACTAGTGAGC+TGG + chr1_2:72965555-72965574 Msa0090870:intron 40.0%
CAAGGATGTCTATGTCTCAA+TGG - chr1_2:72965765-72965784 None:intergenic 40.0%
CATTGAGACATAGACATCCT+TGG + chr1_2:72965763-72965782 Msa0090870:three_prime_UTR 40.0%
ACATCCTTGGGAGCTAATAA+TGG + chr1_2:72965776-72965795 Msa0090870:three_prime_UTR 40.0%
CATCCTTGGGAGCTAATAAT+GGG + chr1_2:72965777-72965796 Msa0090870:three_prime_UTR 40.0%
TTTCCCATTATTAGCTCCCA+AGG - chr1_2:72965783-72965802 None:intergenic 40.0%
AAAGGCAATGTTTGTGTTGC+TGG + chr1_2:72965810-72965829 Msa0090870:three_prime_UTR 40.0%
! GGTGTTGTGCATTAGAAGAT+GGG + chr1_2:72965874-72965893 Msa0090870:three_prime_UTR 40.0%
GTGTTGTGCATTAGAAGATG+GGG + chr1_2:72965875-72965894 Msa0090870:three_prime_UTR 40.0%
!! GTTGGTTCTATTCAGGAAAG+TGG + chr1_2:72966050-72966069 Msa0090870:three_prime_UTR 40.0%
GAAGTCCTAAGGCAGTAGTA+AGG - chr1_2:72959886-72959905 None:intergenic 45.0%
TCAGACGCATTGAGAGTAAC+TGG + chr1_2:72960067-72960086 Msa0090870:CDS 45.0%
GGAAAATGCTTGGAAAGCCT+TGG + chr1_2:72960108-72960127 Msa0090870:CDS 45.0%
GATGTATATGTTTGTGGCGG+AGG - chr1_2:72960156-72960175 None:intergenic 45.0%
! AAAGTACTTGAATCGGGTGC+AGG + chr1_2:72960303-72960322 Msa0090870:intron 45.0%
CATTCGGAAGTTCATTGGCA+AGG - chr1_2:72960563-72960582 None:intergenic 45.0%
CTTGCCAATGAACTTCCGAA+TGG + chr1_2:72960561-72960580 Msa0090870:CDS 45.0%
AACTTCCGAATGGCACCATT+AGG + chr1_2:72960571-72960590 Msa0090870:CDS 45.0%
TCAACTCTGTGGTTGCAAAG+TGG + chr1_2:72960839-72960858 Msa0090870:CDS 45.0%
TCTGTGGTTGCAAAGTGGTT+AGG + chr1_2:72960844-72960863 Msa0090870:CDS 45.0%
TGCAAAGTGGTTAGGCTTCA+AGG + chr1_2:72960852-72960871 Msa0090870:CDS 45.0%
AAAGTGGTTAGGCTTCAAGG+AGG + chr1_2:72960855-72960874 Msa0090870:CDS 45.0%
TTCAAGGAGGCCACTTATAC+AGG + chr1_2:72960868-72960887 Msa0090870:CDS 45.0%
! AATCAGGGGTTTTGCAGAGT+TGG + chr1_2:72960900-72960919 Msa0090870:CDS 45.0%
AAAAGGGAATTGACCTTGGG+TGG - chr1_2:72961040-72961059 None:intergenic 45.0%
AATGTTCAGTCCTAAGGAGG+TGG + chr1_2:72961330-72961349 Msa0090870:intron 45.0%
ACATCCTTGGGAGCTCATAA+TGG + chr1_2:72961719-72961738 Msa0090870:CDS 45.0%
CATCCTTGGGAGCTCATAAT+GGG + chr1_2:72961720-72961739 Msa0090870:CDS 45.0%
TTTCCCATTATGAGCTCCCA+AGG - chr1_2:72961726-72961745 None:intergenic 45.0%
! TGACCAAGATCAGGTGTCAT+GGG - chr1_2:72961792-72961811 None:intergenic 45.0%
TTGACCAAGATCAGGTGTCA+TGG - chr1_2:72961793-72961812 None:intergenic 45.0%
ATGACACCTGATCTTGGTCA+AGG + chr1_2:72961792-72961811 Msa0090870:CDS 45.0%
TGACACCTGATCTTGGTCAA+GGG + chr1_2:72961793-72961812 Msa0090870:CDS 45.0%
!! GGTGTTGTGCTTTAGAGGAT+GGG + chr1_2:72961817-72961836 Msa0090870:intron 45.0%
!! GTGTTGTGCTTTAGAGGATG+GGG + chr1_2:72961818-72961837 Msa0090870:intron 45.0%
ACCAAAGGAAGAAGAAGAGG+AGG + chr1_2:72961881-72961900 Msa0090870:CDS 45.0%
TCCTCCTCTTCTTCTTCCTT+TGG - chr1_2:72961885-72961904 None:intergenic 45.0%
!!! TGTCGCTTTTCTTTTTGCCG+TGG + chr1_2:72962162-72962181 Msa0090870:intron 45.0%
ATTGTAGGAGCTGGAATTGC+TGG + chr1_2:72963271-72963290 Msa0090870:intron 45.0%
! GTTTCGCCGCTAAGTCTTTT+TGG + chr1_2:72963860-72963879 Msa0090870:intron 45.0%
!! CTCCACTTTGGTGCCATTAA+TGG + chr1_2:72963962-72963981 Msa0090870:intron 45.0%
TGCCATTAATGGCACCAAAG+TGG - chr1_2:72963967-72963986 None:intergenic 45.0%
!! ATGCAATGGTATGGTGCCAT+TGG - chr1_2:72963990-72964009 None:intergenic 45.0%
TTGATGTGTGTGGATGTGTG+TGG - chr1_2:72964049-72964068 None:intergenic 45.0%
CACACATCCACACACATCAA+CGG + chr1_2:72964049-72964068 Msa0090870:intron 45.0%
CACCAATGACACCATTGCTA+TGG + chr1_2:72964090-72964109 Msa0090870:intron 45.0%
!! TGCCATAGCAATGGTGTCAT+TGG - chr1_2:72964095-72964114 None:intergenic 45.0%
GGTATGGGAAAATGCTTGGA+AGG + chr1_2:72964407-72964426 Msa0090870:CDS 45.0%
! GAAGTTGTAGATGTTGGTGG+CGG - chr1_2:72964464-72964483 None:intergenic 45.0%
TCCAATACACCGAACTTCAC+GGG - chr1_2:72964969-72964988 None:intergenic 45.0%
ACTAGGAAGCTCATTGGCAA+GGG - chr1_2:72965011-72965030 None:intergenic 45.0%
!! ATGTACCTAATGGTGCCACT+AGG - chr1_2:72965028-72965047 None:intergenic 45.0%
! TGTGATGGAGTAAACTCTGG+TGG + chr1_2:72965139-72965158 Msa0090870:CDS 45.0%
AGTAAACTCTGGTGGCAAAG+TGG + chr1_2:72965147-72965166 Msa0090870:CDS 45.0%
TTCAACGAAGCCTCATACAC+AGG + chr1_2:72965176-72965195 Msa0090870:CDS 45.0%
TCAACGAAGCCTCATACACA+GGG + chr1_2:72965177-72965196 Msa0090870:CDS 45.0%
TGCATATCTCCCTGTGTATG+AGG - chr1_2:72965189-72965208 None:intergenic 45.0%
!! CATTGGTTCAAGCTTGTGAG+TGG - chr1_2:72965237-72965256 None:intergenic 45.0%
!!! TTTGGCAAAGGTTTTAGGGC+TGG + chr1_2:72965269-72965288 Msa0090870:three_prime_UTR 45.0%
ACATGGACTCCTATCAACCA+AGG + chr1_2:72965332-72965351 Msa0090870:three_prime_UTR 45.0%
! GGGTGTTGTGCATTAGAAGA+TGG + chr1_2:72965873-72965892 Msa0090870:three_prime_UTR 45.0%
TTGTGCATTAGAAGATGGGG+TGG + chr1_2:72965878-72965897 Msa0090870:three_prime_UTR 45.0%
! TTTAGCGAGGTGTTTAGCTG+AGG + chr1_2:72965902-72965921 Msa0090870:three_prime_UTR 45.0%
!! AAAATAATTAAAAAAATCAA+AGG + chr1_2:72962741-72962760 Msa0090870:intron 5.0%
!!! ATTTTCATTTATATAAATAT+GGG - chr1_2:72963809-72963828 None:intergenic 5.0%
GATGTTGTGATTGTGGGAGC+TGG + chr1_2:72959851-72959870 Msa0090870:CDS 50.0%
ATTGTGGGAGCTGGAATTGC+TGG + chr1_2:72959860-72959879 Msa0090870:CDS 50.0%
CTACTGCCTTAGGACTTCAC+AGG + chr1_2:72959888-72959907 Msa0090870:CDS 50.0%
GTGGTACCTGTGAAGTCCTA+AGG - chr1_2:72959897-72959916 None:intergenic 50.0%
TGGAAAGCCTTGGATGCTGT+TGG + chr1_2:72960118-72960137 Msa0090870:CDS 50.0%
TCCAACACCAACAGCATCCA+AGG - chr1_2:72960128-72960147 None:intergenic 50.0%
!! GGTGCCATTCGGAAGTTCAT+TGG - chr1_2:72960568-72960587 None:intergenic 50.0%
TCTTAGCACACCACCTCCTT+AGG - chr1_2:72961343-72961362 None:intergenic 50.0%
! GACCAAGATCAGGTGTCATG+GGG - chr1_2:72961791-72961810 None:intergenic 50.0%
GACACCTGATCTTGGTCAAG+GGG + chr1_2:72961794-72961813 Msa0090870:CDS 50.0%
ACACCTGATCTTGGTCAAGG+GGG + chr1_2:72961795-72961814 Msa0090870:CDS 50.0%
!! GGGTGTTGTGCTTTAGAGGA+TGG + chr1_2:72961816-72961835 Msa0090870:intron 50.0%
!! TTGTGCTTTAGAGGATGGGG+TGG + chr1_2:72961821-72961840 Msa0090870:intron 50.0%
!!! AGGATGGGGTGGTTTTAGCA+AGG + chr1_2:72961832-72961851 Msa0090870:intron 50.0%
GAAGTCCCAAGGATGTTGTG+AGG - chr1_2:72963297-72963316 None:intergenic 50.0%
CAACATCCTTGGGACTTCAC+AGG + chr1_2:72963299-72963318 Msa0090870:CDS 50.0%
! AGAGTACCTGTGAAGTCCCA+AGG - chr1_2:72963308-72963327 None:intergenic 50.0%
!! GGTGCCATTAATGGCACCAA+TGG + chr1_2:72963971-72963990 Msa0090870:intron 50.0%
!! GGTGCCATTGGTGCCATTAA+TGG - chr1_2:72963978-72963997 None:intergenic 50.0%
! GTGGTGGAGATGCAATGGTA+TGG - chr1_2:72963999-72964018 None:intergenic 50.0%
! TGTGTGTGGTGGAGATGCAA+TGG - chr1_2:72964004-72964023 None:intergenic 50.0%
TGATGTGTGTGTGTGTGTGG+TGG - chr1_2:72964015-72964034 None:intergenic 50.0%
GTGTGATGTGTGTGTGTGTG+TGG - chr1_2:72964018-72964037 None:intergenic 50.0%
!! AACGGCCAGGATTGGTTCTA+TGG + chr1_2:72964067-72964086 Msa0090870:intron 50.0%
!! TGGTGCCATAGAACCAATCC+TGG - chr1_2:72964075-72964094 None:intergenic 50.0%
! GGAAAATGCTTGGAAGGCGT+TGG + chr1_2:72964413-72964432 Msa0090870:CDS 50.0%
AGATGACCTGATGCCAAGAG+AGG + chr1_2:72964661-72964680 Msa0090870:intron 50.0%
TTTCAGCCTCTCTTGGCATC+AGG - chr1_2:72964670-72964689 None:intergenic 50.0%
! ATAGTGGAGCCCGTGAAGTT+CGG + chr1_2:72964957-72964976 Msa0090870:intron 50.0%
CACTAGGAAGCTCATTGGCA+AGG - chr1_2:72965012-72965031 None:intergenic 50.0%
CTTGCCAATGAGCTTCCTAG+TGG + chr1_2:72965010-72965029 Msa0090870:CDS 50.0%
AGCTTCCTAGTGGCACCATT+AGG + chr1_2:72965020-72965039 Msa0090870:CDS 50.0%
! GGGTGTGATGGAGTAAACTC+TGG + chr1_2:72965136-72965155 Msa0090870:CDS 50.0%
ACACAGGGAGATATGCAACG+AGG + chr1_2:72965192-72965211 Msa0090870:CDS 50.0%
CACAGGGAGATATGCAACGA+GGG + chr1_2:72965193-72965212 Msa0090870:CDS 50.0%
ACAGGGAGATATGCAACGAG+GGG + chr1_2:72965194-72965213 Msa0090870:CDS 50.0%
CACCCTATGATGCCTGATCT+TGG + chr1_2:72965843-72965862 Msa0090870:three_prime_UTR 50.0%
GGCCAAGATCAGGCATCATA+GGG - chr1_2:72965848-72965867 None:intergenic 50.0%
TGGCCAAGATCAGGCATCAT+AGG - chr1_2:72965849-72965868 None:intergenic 50.0%
ATGATGCCTGATCTTGGCCA+AGG + chr1_2:72965849-72965868 Msa0090870:three_prime_UTR 50.0%
CTAATGCACAACACCCTCCT+TGG - chr1_2:72965869-72965888 None:intergenic 50.0%
!!! AAGATGGGGTGGTTTTAGCG+AGG + chr1_2:72965889-72965908 Msa0090870:three_prime_UTR 50.0%
!! GCTGGCCTTACTACTGCCTT+AGG + chr1_2:72959878-72959897 Msa0090870:CDS 55.0%
GCCTTGGATGCTGTTGGTGT+TGG + chr1_2:72960124-72960143 Msa0090870:CDS 55.0%
ACTTGGACTCCTACCACCCA+AGG + chr1_2:72961024-72961043 Msa0090870:CDS 55.0%
GGGAATTGACCTTGGGTGGT+AGG - chr1_2:72961036-72961055 None:intergenic 55.0%
CACCCCATGACACCTGATCT+TGG + chr1_2:72961786-72961805 Msa0090870:CDS 55.0%
CACCTGATCTTGGTCAAGGG+GGG + chr1_2:72961796-72961815 Msa0090870:CDS 55.0%
!! AGGGGGGTGTTGTGCTTTAG+AGG + chr1_2:72961812-72961831 Msa0090870:intron 55.0%
! TGCTGGCCTCACAACATCCT+TGG + chr1_2:72963288-72963307 Msa0090870:CDS 55.0%
! GCTGGCCTCACAACATCCTT+GGG + chr1_2:72963289-72963308 Msa0090870:CDS 55.0%
ATCCACACACATCAACGGCC+AGG + chr1_2:72964054-72964073 Msa0090870:intron 55.0%
ATCCTGGCCGTTGATGTGTG+TGG - chr1_2:72964059-72964078 None:intergenic 55.0%
CACACATCAACGGCCAGGAT+TGG + chr1_2:72964059-72964078 Msa0090870:intron 55.0%
!! TGGAAGGCGTTGGATGTCGT+TGG + chr1_2:72964423-72964442 Msa0090870:CDS 55.0%
GCGTTGGATGTCGTTGGTGT+TGG + chr1_2:72964429-72964448 Msa0090870:CDS 55.0%
!! GTTGTAGATGTTGGTGGCGG+AGG - chr1_2:72964461-72964480 None:intergenic 55.0%
!! GCCCGTGAAGTTCGGTGTAT+TGG + chr1_2:72964965-72964984 Msa0090870:CDS 55.0%
!! GGTGCCACTAGGAAGCTCAT+TGG - chr1_2:72965017-72965036 None:intergenic 55.0%
ACTCTGGTGGCAAAGTGGCT+AGG + chr1_2:72965152-72965171 Msa0090870:CDS 55.0%
ATGCCTGATCTTGGCCAAGG+AGG + chr1_2:72965852-72965871 Msa0090870:three_prime_UTR 55.0%
TGCCTGATCTTGGCCAAGGA+GGG + chr1_2:72965853-72965872 Msa0090870:three_prime_UTR 55.0%
CACCCCCCTTGACCAAGATC+AGG - chr1_2:72961801-72961820 None:intergenic 60.0%
CACCCTCCTTGGCCAAGATC+AGG - chr1_2:72965858-72965877 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 72959783 72966229 72959783 ID=Msa0090870;Name=Msa0090870
chr1_2 mRNA 72959783 72966229 72959783 ID=Msa0090870-mRNA-1;Parent=Msa0090870;Name=Msa0090870-mRNA-1;_AED=0.17;_eAED=0.17;_QI=41|0.72|0.66|1|0.81|0.66|12|694|572
chr1_2 exon 72959783 72959909 72959783 ID=Msa0090870-mRNA-1:exon:25354;Parent=Msa0090870-mRNA-1
chr1_2 exon 72960036 72960182 72960036 ID=Msa0090870-mRNA-1:exon:25355;Parent=Msa0090870-mRNA-1
chr1_2 exon 72960325 72960393 72960325 ID=Msa0090870-mRNA-1:exon:25356;Parent=Msa0090870-mRNA-1
chr1_2 exon 72960521 72960677 72960521 ID=Msa0090870-mRNA-1:exon:25357;Parent=Msa0090870-mRNA-1
chr1_2 exon 72960817 72961045 72960817 ID=Msa0090870-mRNA-1:exon:25358;Parent=Msa0090870-mRNA-1
chr1_2 exon 72961583 72961817 72961583 ID=Msa0090870-mRNA-1:exon:25359;Parent=Msa0090870-mRNA-1
chr1_2 exon 72961854 72962101 72961854 ID=Msa0090870-mRNA-1:exon:25360;Parent=Msa0090870-mRNA-1
chr1_2 exon 72963278 72963320 72963278 ID=Msa0090870-mRNA-1:exon:25361;Parent=Msa0090870-mRNA-1
chr1_2 exon 72964341 72964487 72964341 ID=Msa0090870-mRNA-1:exon:25362;Parent=Msa0090870-mRNA-1
chr1_2 exon 72964715 72964783 72964715 ID=Msa0090870-mRNA-1:exon:25363;Parent=Msa0090870-mRNA-1
chr1_2 exon 72964961 72965353 72964961 ID=Msa0090870-mRNA-1:exon:25364;Parent=Msa0090870-mRNA-1
chr1_2 exon 72965640 72966229 72965640 ID=Msa0090870-mRNA-1:exon:25365;Parent=Msa0090870-mRNA-1
chr1_2 five_prime_UTR 72959783 72959823 72959783 ID=Msa0090870-mRNA-1:five_prime_utr;Parent=Msa0090870-mRNA-1
chr1_2 CDS 72959824 72959909 72959824 ID=Msa0090870-mRNA-1:cds;Parent=Msa0090870-mRNA-1
chr1_2 CDS 72960036 72960182 72960036 ID=Msa0090870-mRNA-1:cds;Parent=Msa0090870-mRNA-1
chr1_2 CDS 72960325 72960393 72960325 ID=Msa0090870-mRNA-1:cds;Parent=Msa0090870-mRNA-1
chr1_2 CDS 72960521 72960677 72960521 ID=Msa0090870-mRNA-1:cds;Parent=Msa0090870-mRNA-1
chr1_2 CDS 72960817 72961045 72960817 ID=Msa0090870-mRNA-1:cds;Parent=Msa0090870-mRNA-1
chr1_2 CDS 72961583 72961817 72961583 ID=Msa0090870-mRNA-1:cds;Parent=Msa0090870-mRNA-1
chr1_2 CDS 72961854 72962101 72961854 ID=Msa0090870-mRNA-1:cds;Parent=Msa0090870-mRNA-1
chr1_2 CDS 72963278 72963320 72963278 ID=Msa0090870-mRNA-1:cds;Parent=Msa0090870-mRNA-1
chr1_2 CDS 72964341 72964487 72964341 ID=Msa0090870-mRNA-1:cds;Parent=Msa0090870-mRNA-1
chr1_2 CDS 72964715 72964783 72964715 ID=Msa0090870-mRNA-1:cds;Parent=Msa0090870-mRNA-1
chr1_2 CDS 72964961 72965249 72964961 ID=Msa0090870-mRNA-1:cds;Parent=Msa0090870-mRNA-1
chr1_2 three_prime_UTR 72965250 72965353 72965250 ID=Msa0090870-mRNA-1:three_prime_utr;Parent=Msa0090870-mRNA-1
chr1_2 three_prime_UTR 72965640 72966229 72965640 ID=Msa0090870-mRNA-1:three_prime_utr;Parent=Msa0090870-mRNA-1
Gene Sequence

>Msa0090870

ATGGAAACAACAAAAATAGTTGAAGAAGATGTTGTGATTGTGGGAGCTGGAATTGCTGGCCTTACTACTGCCTTAGGACTTCACAGGTTAGGTGTAAGAAGTTTGGTATTGGAATCTTCAGACGCATTGAGAGTAACTGGATTTGCTTTAGGAATATGGGAAAATGCTTGGAAAGCCTTGGATGCTGTTGGTGTTGGAGATATCCTCCGCCACAAACATATACATCTTTATGGGAATGTGACTACTTCTTTGATTACAGGACATCAATTAGCAACTATGTCTTTTAGGGACAAAGGAAAGCTTGAACTACGTAGTGTTAGAAGGAAGTTATTGTTGGAAGCCCTTGCCAATGAACTTCCGAATGGCACCATTAGGTACATGTCAAAAGTTGTTGCTATAGAGGAATCTGGATTCTTTAAAATACTACATCTTGTTGATGGAACAACCATCAAAACCAAGGTATTGATAGGATGTGATGGAATCAACTCTGTGGTTGCAAAGTGGTTAGGCTTCAAGGAGGCCACTTATACAGGTAGATATGGAATCAGGGGTTTTGCAGAGTTGGAAAACAATCACAGTTTTGAGCCTATGCTTATGCAGTTCTATGGCAAAGGTTTTAGAGCTGGAGTTGTTCCTTGTCATGAGAAAGGTGTTTACTGGTTTTTCACTTGGACTCCTACCACCCAAGATAAGGAGCTAATGGAGAACCCTGCTAAACTGAAGCAATATGTGTTAAACAAGCTAGAGAATATGCCAAGTAATGTTAGATCTATCATAGAAAAAACAGAGATAGATGCTTTCCATTCAGCTCCATTGAGATATAGACATCCTTGGGAGCTCATAATGGGAAATATTAGCAAAGGAAATGTTTGTGTTGCTGGTGATGCTTTACACCCCATGACACCTGATCTTGGTCAAGGGGGGTGTCTAGCTGAAGCCTTGTCCAAAAAACCAAAGGAAGAAGAAGAGGAGGAGAAATACAAAAGAATTGAGGAAGGGTTGAAGAAATATGCAAATGAAAGAAGATGGAGATGCATTGATCTTATTACTACAGCTTATATTGCAGGTGTTATTCAGCAGGCTGATTCAAAATTGGTTACATTTTTTAGGGACAAAATTTTGGCTCCATTACTAGCTGGTCAACTATTCAAGAAGTCTGGTTTTGATTGTGGAGCTGGAATTGCTGGCCTCACAACATCCTTGGGACTTCACAGATTGGGCATTGAAAGTTTGGTGTTAGAATCTTCAGATAGTTTGAGAGTTAGTGGATTTGCTTTAACGGTATGGGAAAATGCTTGGAAGGCGTTGGATGTCGTTGGTGTTGGAGACATCCTCCGCCACCAACATCTACAACTTCATGGGAATGTGACTACTTCTTTGGTTATGGGGCAACAAACATCATCTACGTCTTTCATAGACAACAAAGGAAATGGAGCCCGTGAAGTTCGGTGTATTGGAAGAAATTTATTGTTGGAAGCCCTTGCCAATGAGCTTCCTAGTGGCACCATTAGGTACATGTCAAAGGTTGTTGCTATTCAGGAATCTGGCTTCTCTAAAATACTACATCTTGTTGATGGAACAACCATCAAAACCAAGGTATTGATTGGGTGTGATGGAGTAAACTCTGGTGGCAAAGTGGCTAGGCTTCAACGAAGCCTCATACACAGGGAGATATGCAACGAGGGGTTATGCAGAGTTGAAGACCACTCACAAGCTTGA
Protein sequence

>Msa0090870

METTKIVEEDVVIVGAGIAGLTTALGLHRLGVRSLVLESSDALRVTGFALGIWENAWKALDAVGVGDILRHKHIHLYGNVTTSLITGHQLATMSFRDKGKLELRSVRRKLLLEALANELPNGTIRYMSKVVAIEESGFFKILHLVDGTTIKTKVLIGCDGINSVVAKWLGFKEATYTGRYGIRGFAELENNHSFEPMLMQFYGKGFRAGVVPCHEKGVYWFFTWTPTTQDKELMENPAKLKQYVLNKLENMPSNVRSIIEKTEIDAFHSAPLRYRHPWELIMGNISKGNVCVAGDALHPMTPDLGQGGCLAEALSKKPKEEEEEEKYKRIEEGLKKYANERRWRCIDLITTAYIAGVIQQADSKLVTFFRDKILAPLLAGQLFKKSGFDCGAGIAGLTTSLGLHRLGIESLVLESSDSLRVSGFALTVWENAWKALDVVGVGDILRHQHLQLHGNVTTSLVMGQQTSSTSFIDNKGNGAREVRCIGRNLLLEALANELPSGTIRYMSKVVAIQESGFSKILHLVDGTTIKTKVLIGCDGVNSGGKVARLQRSLIHREICNEGLCRVEDHSQA*