AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1190100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1190100 MtrunA17_Chr4g0056771 97.193 285 8 0 1 285 1 285 0.0 576
Msa1190100 MtrunA17_Chr7g0270061 37.113 194 117 1 78 266 86 279 2.64e-41 144
Msa1190100 MtrunA17_Chr4g0038261 33.333 240 148 5 49 282 4 237 2.82e-40 140
Msa1190100 MtrunA17_Chr1g0194601 36.683 199 118 2 76 266 84 282 4.51e-40 141
Msa1190100 MtrunA17_Chr7g0251451 36.126 191 122 0 91 281 75 265 8.18e-39 137
Msa1190100 MtrunA17_Chr5g0409311 29.740 269 173 5 1 266 4 259 1.56e-36 132
Msa1190100 MtrunA17_Chr4g0015831 42.975 121 69 0 74 194 1 121 7.12e-36 125
Msa1190100 MtrunA17_CPg0492721 42.975 121 69 0 74 194 1 121 7.12e-36 125
Msa1190100 MtrunA17_Chr4g0034751 33.333 183 118 1 85 267 93 271 6.13e-32 119
Msa1190100 MtrunA17_Chr4g0055551 35.638 188 113 1 95 274 104 291 2.75e-27 107
Msa1190100 MtrunA17_Chr7g0272191 31.746 189 116 4 104 279 119 307 4.67e-21 90.9
Msa1190100 MtrunA17_Chr1g0207341 31.148 183 116 2 95 267 155 337 6.49e-21 91.3
Msa1190100 MtrunA17_Chr1g0184041 39.474 76 46 0 109 184 100 175 2.89e-16 75.1
Msa1190100 MtrunA17_Chr4g0016921 38.806 67 38 2 74 140 1 64 1.09e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1190100 AT1G12410.1 64.912 285 94 4 1 285 1 279 1.92e-135 384
Msa1190100 ATCG00670.1 41.451 193 112 1 74 265 1 193 4.87e-54 174
Msa1190100 AT5G23140.1 36.041 197 121 2 81 275 37 230 2.10e-42 145
Msa1190100 AT1G02560.1 41.916 167 97 0 100 266 119 285 7.73e-42 146
Msa1190100 AT5G45390.1 36.628 172 109 0 95 266 79 250 1.97e-36 132
Msa1190100 AT1G66670.1 34.031 191 111 4 82 266 75 256 4.98e-36 131
Msa1190100 AT4G17040.1 33.186 226 135 3 57 274 75 292 6.38e-36 130
Msa1190100 AT1G11750.1 34.682 173 113 0 94 266 95 267 2.04e-34 126
Msa1190100 AT1G11750.2 34.483 174 114 0 94 267 113 286 2.89e-34 126
Msa1190100 AT1G09130.2 32.787 183 112 2 95 266 121 303 4.45e-26 105
Msa1190100 AT1G09130.1 32.787 183 112 2 95 266 121 303 4.45e-26 105
Msa1190100 AT1G09130.3 32.787 183 112 2 95 266 121 303 1.20e-25 104
Msa1190100 AT1G49970.1 34.066 182 110 2 95 266 171 352 8.65e-23 97.1

Find 92 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATCAATGGGTTGATTTA+TGG 0.126424 8_1:-32979565 Msa1190100:CDS
TTTGTGCCCTTACTGGTTTC+TGG 0.139154 8_1:+32979645 None:intergenic
TTAACAAGGTTCTCAATTTC+AGG 0.184827 8_1:-32980357 Msa1190100:intron
TTTCAATCCGGAGTAGATTT+TGG 0.262983 8_1:+32980532 None:intergenic
TCATTTCCATAGTGAACTTT+TGG 0.263247 8_1:-32977333 Msa1190100:three_prime_UTR
GCACAAGAGGCCCTTGACTA+TGG 0.268943 8_1:-32977501 Msa1190100:CDS
ATCCGAATTTGTGCCCTTAC+TGG 0.280153 8_1:+32979638 None:intergenic
CCTTCACCAGGTGTTCTATA+GGG 0.283797 8_1:+32979590 None:intergenic
ATATTACTCAGTAATATAAA+TGG 0.306098 8_1:+32977381 None:intergenic
AAGCTCTACTTGTACATTAA+TGG 0.307990 8_1:-32979254 Msa1190100:CDS
CAAACTTTATGTATAATGTT+TGG 0.314043 8_1:-32977281 Msa1190100:intron
AGAATTTAGCAATCAAATAT+TGG 0.329049 8_1:-32979315 Msa1190100:CDS
AATGTACAAGTAGAGCTTCT+TGG 0.334034 8_1:+32979259 None:intergenic
TCCTTCACCAGGTGTTCTAT+AGG 0.343431 8_1:+32979589 None:intergenic
ATAGTGCTTTCAGTAAGAAT+TGG 0.349180 8_1:+32977226 None:intergenic
AAATGAAACGCGAAGCATTC+TGG 0.356766 8_1:+32977350 None:intergenic
CCTCGCAAGGATGCTGGCTC+AGG 0.377210 8_1:-32977432 Msa1190100:CDS
CCTATATGCACCCATTGTAT+AGG 0.399844 8_1:-32979058 Msa1190100:CDS
TCTGAGTTGGCTAACAAAAC+AGG 0.406372 8_1:-32978012 Msa1190100:CDS
GAGCAGCTCCTGCTGGAGAT+TGG 0.410929 8_1:+32978204 None:intergenic
GATGCACCTCGCAAGGATGC+TGG 0.413454 8_1:-32977438 Msa1190100:CDS
AGCAGGAGCTGCTCGTGGTC+GGG 0.415509 8_1:-32978195 Msa1190100:intron
AACCAGTAAGGGCACAAATT+CGG 0.415853 8_1:-32979640 Msa1190100:CDS
GTCATTTAAGGGAGATGTAA+TGG 0.417041 8_1:+32977120 None:intergenic
CATATTCCAAAAGTTCACTA+TGG 0.423619 8_1:+32977327 None:intergenic
CATTGTATAGGCCAAGCTTA+TGG 0.426540 8_1:-32979046 Msa1190100:CDS
CCTATACAATGGGTGCATAT+AGG 0.431234 8_1:+32979058 None:intergenic
AGATCACCGAAGACTTGAAA+AGG 0.434233 8_1:-32977539 Msa1190100:CDS
AGGCATTGGTTAAGAACTCT+TGG 0.435872 8_1:-32977412 Msa1190100:exon
TGGGAGACAAACAGCGGATA+GGG 0.447908 8_1:+32980728 None:intergenic
AAATGGGCACACGTGAAGAT+TGG 0.447978 8_1:+32980507 None:intergenic
CGACCACGAGCAGCTCCTGC+TGG 0.449924 8_1:+32978197 None:intergenic
CAGCAGGAGCTGCTCGTGGT+CGG 0.460713 8_1:-32978196 Msa1190100:CDS
TACTTGTACATTAATGGTCC+TGG 0.468494 8_1:-32979248 Msa1190100:CDS
GCAGCATTTCTACTTGCAGC+TGG 0.472807 8_1:-32979019 Msa1190100:CDS
AGTGAACTGACCTTCTCAAC+AGG 0.482520 8_1:+32977985 None:intergenic
GGGGTTGAAACGGTCGTGTA+GGG 0.483114 8_1:+32980667 None:intergenic
GTGAACGACGATGGAAGGAA+TGG 0.484679 8_1:+32980708 None:intergenic
AAGGATGCTGGCTCAGGCAT+TGG 0.507073 8_1:-32977426 Msa1190100:CDS
ATAAGCTTGGCCTATACAAT+GGG 0.511333 8_1:+32979048 None:intergenic
CTGGTGAAGGAACTTATCAA+TGG 0.511648 8_1:-32979577 Msa1190100:CDS
CTTCACCAGGTGTTCTATAG+GGG 0.512601 8_1:+32979591 None:intergenic
CACAAGAGGCCCTTGACTAT+GGG 0.513257 8_1:-32977500 Msa1190100:CDS
GGCTCATTGACAGAATTGTC+AGG 0.528948 8_1:-32977479 Msa1190100:CDS
TGAAGATTGGAGTTTCAATC+CGG 0.529739 8_1:+32980520 None:intergenic
CATAAGCTTGGCCTATACAA+TGG 0.531992 8_1:+32979047 None:intergenic
ATGGGAGACAAACAGCGGAT+AGG 0.535058 8_1:+32980727 None:intergenic
CAAATTCGGATGATGCCCAT+TGG 0.537610 8_1:-32979626 Msa1190100:CDS
AAAGTTGCAAGAGAAAATAG+AGG 0.538516 8_1:+32977169 None:intergenic
TGGTGAAGGAACTTATCAAT+GGG 0.547080 8_1:-32979576 Msa1190100:CDS
TGAACGACGATGGAAGGAAT+GGG 0.549143 8_1:+32980709 None:intergenic
AACAGGCCAGCCTGTTGAGA+AGG 0.549239 8_1:-32977995 Msa1190100:intron
ATGCTAACCAGAAACCAGTA+AGG 0.549654 8_1:-32979652 Msa1190100:CDS
GGTGTTCTATAGGGGACTCT+AGG 0.553085 8_1:+32979599 None:intergenic
CATTGATAAGTTCCTTCACC+AGG 0.553758 8_1:+32979578 None:intergenic
AAAAGCTGATGCACCTCGCA+AGG 0.558743 8_1:-32977445 Msa1190100:CDS
TTGAGGTGAACGACGATGGA+AGG 0.559153 8_1:+32980703 None:intergenic
CGAGAACGTGTTATCTTCAT+CGG 0.562508 8_1:-32979353 Msa1190100:CDS
AACTGACCTTCTCAACAGGC+TGG 0.565578 8_1:+32977989 None:intergenic
TCTACTTGCAGCTGGAGAGA+AGG 0.566048 8_1:-32979011 Msa1190100:intron
CCCGTGTTTATTCTCCTCCT+AGG 0.566421 8_1:-32980645 Msa1190100:intron
GATCACCGAAGACTTGAAAA+GGG 0.568998 8_1:-32977538 Msa1190100:CDS
TGTCAATGAGCCCATAGTCA+AGG 0.569550 8_1:+32977490 None:intergenic
CCCTATAGAACACCTGGTGA+AGG 0.570130 8_1:-32979590 Msa1190100:CDS
GGGGACTCTAGGAGTTCCAA+TGG 0.572526 8_1:+32979610 None:intergenic
ATGCTGCAAGACCATAAGCT+TGG 0.573039 8_1:+32979035 None:intergenic
CATGTTGAGGTGAACGACGA+TGG 0.577171 8_1:+32980699 None:intergenic
GTTTCCACCAAAATCTACTC+CGG 0.585864 8_1:-32980539 Msa1190100:CDS
TCTCCAGCAGGAGCTGCTCG+TGG 0.586081 8_1:-32978200 Msa1190100:CDS
TGGAGAACAATTCTTGCAAG+AGG 0.588103 8_1:+32978224 None:intergenic
GTCAATGAGCCCATAGTCAA+GGG 0.588285 8_1:+32977491 None:intergenic
TTGACAGAATTGTCAGGCCA+CGG 0.588957 8_1:-32977473 Msa1190100:CDS
ATTGTTCTCCAATCTCCAGC+AGG 0.591740 8_1:-32978212 Msa1190100:CDS
AGAGTCCCCTATAGAACACC+TGG 0.598970 8_1:-32979596 Msa1190100:CDS
TGTACATTAATGGTCCTGGT+GGG 0.599482 8_1:-32979244 Msa1190100:CDS
AGGAGTCTGCAAGCTTTGCA+TGG 0.619828 8_1:+32979078 None:intergenic
ATTGTGTGAGATTACCTAGG+AGG 0.620949 8_1:+32980631 None:intergenic
AAAACGATTTGATGCACAAG+AGG 0.623503 8_1:-32977514 Msa1190100:CDS
GGGACTCTAGGAGTTCCAAT+GGG 0.623929 8_1:+32979611 None:intergenic
TTGTACATTAATGGTCCTGG+TGG 0.642823 8_1:-32979245 Msa1190100:CDS
GTACATTAATGGTCCTGGTG+GGG 0.651895 8_1:-32979243 Msa1190100:CDS
ACCTAGGAGGAGAATAAACA+CGG 0.655551 8_1:+32980644 None:intergenic
TCATTACTTACATCCCCACC+AGG 0.676936 8_1:+32979230 None:intergenic
TGCTAACCAGAAACCAGTAA+GGG 0.683549 8_1:-32979651 Msa1190100:CDS
CGTCGTTCACCTCAACATGA+CGG 0.689478 8_1:-32980695 Msa1190100:exon
CCTAGGAGGAGAATAAACAC+GGG 0.702649 8_1:+32980645 None:intergenic
AGGGTGCGACCGTCATGTTG+AGG 0.710339 8_1:+32980686 None:intergenic
GTATCGTAGAGAGACATGCA+TGG 0.715789 8_1:+32979100 None:intergenic
CTAGGAGGAGAATAAACACG+GGG 0.729198 8_1:+32980646 None:intergenic
AGGAGGAGAATAAACACGGG+GGG 0.747945 8_1:+32980648 None:intergenic
AAGGAATGGGAGACAAACAG+CGG 0.758063 8_1:+32980722 None:intergenic
TAGGAGGAGAATAAACACGG+GGG 0.826083 8_1:+32980647 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCGTTATTATTATTATTTT+CGG - chr8_1:32977729-32977748 Msa1190100:intron 10.0%
!! AATTGAAATGAAAAATTTGT+GGG + chr8_1:32977272-32977291 None:intergenic 15.0%
!! AAATTGAAATGAAAAATTTG+TGG + chr8_1:32977273-32977292 None:intergenic 15.0%
!! AAGAATGAAATTAAGAAAAT+GGG + chr8_1:32977387-32977406 None:intergenic 15.0%
!!! TATGATTGGTATTTTTTTTA+AGG - chr8_1:32977813-32977832 Msa1190100:intron 15.0%
!! CTATAAATATAATACATGTT+AGG + chr8_1:32979260-32979279 None:intergenic 15.0%
!! AAAAGTTCTTGAAAAATATT+TGG - chr8_1:32980099-32980118 Msa1190100:intron 15.0%
!! ATATTACTCAGTAATATAAA+TGG + chr8_1:32980497-32980516 None:intergenic 15.0%
!! GAAGAATGAAATTAAGAAAA+TGG + chr8_1:32977388-32977407 None:intergenic 20.0%
!!! TTTTTTTGTTAATTTCCTGT+TGG - chr8_1:32977654-32977673 Msa1190100:intron 20.0%
!! AATCATAATATTTAACACCA+CGG + chr8_1:32977800-32977819 None:intergenic 20.0%
!! TACCTAAAAACATAAAAGTT+TGG + chr8_1:32978204-32978223 None:intergenic 20.0%
!! AGAATTTAGCAATCAAATAT+TGG - chr8_1:32978560-32978579 Msa1190100:intron 20.0%
!! TAAGTAATGATTCTAATGTT+TGG - chr8_1:32978658-32978677 Msa1190100:intron 20.0%
!! AATATTAAACTAGAAACAAG+AGG + chr8_1:32978700-32978719 None:intergenic 20.0%
!! TAAAAAGATTTCCTACATTA+CGG - chr8_1:32978983-32979002 Msa1190100:intron 20.0%
!! TTATATATAACCACAAAAGA+AGG - chr8_1:32979192-32979211 Msa1190100:intron 20.0%
!! GTATGTTAAAATGAAAAAGT+TGG - chr8_1:32979334-32979353 Msa1190100:CDS 20.0%
!! TGTAATATTCTGTTGTATTA+AGG - chr8_1:32979611-32979630 Msa1190100:CDS 20.0%
!! GTAATATTCTGTTGTATTAA+GGG - chr8_1:32979612-32979631 Msa1190100:CDS 20.0%
!!! TCACTTTAAAATGAAATTCA+TGG - chr8_1:32979908-32979927 Msa1190100:intron 20.0%
!!! TTTGGAATATGTATAATGTT+TGG - chr8_1:32980560-32980579 Msa1190100:intron 20.0%
!! CAAACATTATACATAAAGTT+TGG + chr8_1:32980596-32980615 None:intergenic 20.0%
!! CAAACTTTATGTATAATGTT+TGG - chr8_1:32980594-32980613 Msa1190100:intron 20.0%
!! AAAGTACCTGAAATTGAAAA+TGG + chr8_1:32977448-32977467 None:intergenic 25.0%
!!! TTTTCAATTTCAGGTACTTT+TGG - chr8_1:32977448-32977467 Msa1190100:CDS 25.0%
!!! AATGTAAACTCTCAGTTTTT+TGG - chr8_1:32977490-32977509 Msa1190100:CDS 25.0%
!!! GTTTTTTGGTAAAGTTAACA+AGG - chr8_1:32977504-32977523 Msa1190100:CDS 25.0%
!!! ATTATTATTTTCGGATTAGC+AGG - chr8_1:32977738-32977757 Msa1190100:intron 25.0%
!! GTGGTGTTAAATATTATGAT+TGG - chr8_1:32977799-32977818 Msa1190100:intron 25.0%
!!! GTTTTAATCCATACTTTCAT+TGG + chr8_1:32978070-32978089 None:intergenic 25.0%
!! TGAAAGTATGGATTAAAACA+TGG - chr8_1:32978071-32978090 Msa1190100:CDS 25.0%
!! TGCCAAACTTTTATGTTTTT+AGG - chr8_1:32978199-32978218 Msa1190100:CDS 25.0%
! AAAAAGATTTCCTACATTAC+GGG - chr8_1:32978984-32979003 Msa1190100:intron 25.0%
! TTGCATTCTCAATATAATCA+AGG - chr8_1:32979024-32979043 Msa1190100:CDS 25.0%
! ATTCTCAATATAATCAAGGA+TGG - chr8_1:32979028-32979047 Msa1190100:CDS 25.0%
! ATGATCCTTAATCATATTTG+TGG + chr8_1:32979119-32979138 None:intergenic 25.0%
! TTTCCATAATTTCAAACTAC+CGG + chr8_1:32979365-32979384 None:intergenic 25.0%
!! TATTTGGAATAAGATTGTGA+TGG + chr8_1:32979450-32979469 None:intergenic 25.0%
! TGTGACATTCATTTCTAAAT+TGG - chr8_1:32979498-32979517 Msa1190100:intron 25.0%
!! GAATTTAACTTCATCTACAA+AGG + chr8_1:32980129-32980148 None:intergenic 25.0%
!!! TCTTAGAGTTCATTTTTTCA+TGG - chr8_1:32980247-32980266 Msa1190100:intron 25.0%
!!! TCATAATGAGTTTTATTTGC+TGG - chr8_1:32980287-32980306 Msa1190100:intron 25.0%
! CATTCACCATTTTCAATTTC+AGG - chr8_1:32977439-32977458 Msa1190100:CDS 30.0%
TTAACAAGGTTCTCAATTTC+AGG - chr8_1:32977518-32977537 Msa1190100:CDS 30.0%
CAAGTAATTGATTATGTCAC+TGG - chr8_1:32977589-32977608 Msa1190100:intron 30.0%
! ATCACAAATGTAATTTTGCG+AGG - chr8_1:32978021-32978040 Msa1190100:CDS 30.0%
TTCTTTGACCAATGAAAGTA+TGG - chr8_1:32978059-32978078 Msa1190100:CDS 30.0%
AAAACATGGTTTATGTCACT+TGG - chr8_1:32978085-32978104 Msa1190100:intron 30.0%
! AAACATGGTTTATGTCACTT+GGG - chr8_1:32978086-32978105 Msa1190100:intron 30.0%
!! CTTATCAATGGGTTGATTTA+TGG - chr8_1:32978310-32978329 Msa1190100:intron 30.0%
CAAGATGTAACAACTTACAA+GGG + chr8_1:32978340-32978359 None:intergenic 30.0%
TCAAGATGTAACAACTTACA+AGG + chr8_1:32978341-32978360 None:intergenic 30.0%
AAAAGACGAAAATTAACTCG+AGG + chr8_1:32978457-32978476 None:intergenic 30.0%
AAGCTCTACTTGTACATTAA+TGG - chr8_1:32978621-32978640 Msa1190100:intron 30.0%
GTAATGATTCTAATGTTTGG+TGG - chr8_1:32978661-32978680 Msa1190100:intron 30.0%
TTAAATAGCTGATCGTCAAA+AGG + chr8_1:32978723-32978742 None:intergenic 30.0%
AAGTTGTATTAACAGACAGT+GGG + chr8_1:32978901-32978920 None:intergenic 30.0%
AAGTTAAACTTGTCATAGCA+CGG - chr8_1:32978925-32978944 Msa1190100:intron 30.0%
GTATAAAGTCCATTCAACAA+AGG + chr8_1:32979054-32979073 None:intergenic 30.0%
TACATAGATATCTCTTCTGT+AGG + chr8_1:32979080-32979099 None:intergenic 30.0%
TCCTTAATCATATTTGTGGT+GGG + chr8_1:32979115-32979134 None:intergenic 30.0%
ATCCTTAATCATATTTGTGG+TGG + chr8_1:32979116-32979135 None:intergenic 30.0%
! AAACTCATTTCCTTCTTTTG+TGG + chr8_1:32979205-32979224 None:intergenic 30.0%
ATGATCATTCATGACAGTTA+AGG + chr8_1:32979288-32979307 None:intergenic 30.0%
GTTAAAATGAAAAAGTTGGC+AGG - chr8_1:32979338-32979357 Msa1190100:CDS 30.0%
TGACATCTATCTCAGAAAAA+AGG + chr8_1:32979714-32979733 None:intergenic 30.0%
AACATTGTGAAAACTCTTTC+AGG - chr8_1:32979784-32979803 Msa1190100:intron 30.0%
! AGATTATCTTTTCTCTGAGT+TGG - chr8_1:32979850-32979869 Msa1190100:intron 30.0%
CATACAGAGAAGAAGTTATT+TGG + chr8_1:32980076-32980095 None:intergenic 30.0%
AATGAAGCTTAGATATCGAA+AGG + chr8_1:32980188-32980207 None:intergenic 30.0%
!! GAACTCTAAGATACACAAAA+TGG + chr8_1:32980238-32980257 None:intergenic 30.0%
!!! TTTTACCCTTTTCAAGTCTT+CGG + chr8_1:32980345-32980364 None:intergenic 30.0%
! TCATTTCCATAGTGAACTTT+TGG - chr8_1:32980542-32980561 Msa1190100:CDS 30.0%
CATATTCCAAAAGTTCACTA+TGG + chr8_1:32980551-32980570 None:intergenic 30.0%
ATAGTGCTTTCAGTAAGAAT+TGG + chr8_1:32980652-32980671 None:intergenic 30.0%
AAAGTTGCAAGAGAAAATAG+AGG + chr8_1:32980709-32980728 None:intergenic 30.0%
! TTTTGGTGGAAACACTGAAA+TGG + chr8_1:32977329-32977348 None:intergenic 35.0%
! TTTCAATCCGGAGTAGATTT+TGG + chr8_1:32977346-32977365 None:intergenic 35.0%
TGAAGATTGGAGTTTCAATC+CGG + chr8_1:32977358-32977377 None:intergenic 35.0%
! AGGTTCTCAATTTCAGGTAA+TGG - chr8_1:32977524-32977543 Msa1190100:CDS 35.0%
! GGTTCTCAATTTCAGGTAAT+GGG - chr8_1:32977525-32977544 Msa1190100:CDS 35.0%
!! AATTTCAGGTAATGGGTTGT+GGG - chr8_1:32977532-32977551 Msa1190100:CDS 35.0%
! GATACATTTTTCCTAGATGC+TGG - chr8_1:32977701-32977720 Msa1190100:intron 35.0%
ATGATATTTGTCGCGAGAAA+TGG - chr8_1:32977839-32977858 Msa1190100:intron 35.0%
TGATATTTGTCGCGAGAAAT+GGG - chr8_1:32977840-32977859 Msa1190100:intron 35.0%
TAATTAGTTGCTTCCCAAGA+GGG - chr8_1:32977904-32977923 Msa1190100:intron 35.0%
TAACTGATTAAGATCTCTCC+TGG + chr8_1:32977938-32977957 None:intergenic 35.0%
!! CTTTAATTTGTGAGTCCTTC+AGG - chr8_1:32977959-32977978 Msa1190100:intron 35.0%
TGGTGAAGGAACTTATCAAT+GGG - chr8_1:32978299-32978318 Msa1190100:intron 35.0%
TTGTACGCTTATCTAAGAAC+TGG - chr8_1:32978377-32978396 Msa1190100:intron 35.0%
TGGTGAAGGAACATAGTAAT+GGG - chr8_1:32978397-32978416 Msa1190100:intron 35.0%
! GTTACTTTATGACGTAGTCA+TGG - chr8_1:32978419-32978438 Msa1190100:intron 35.0%
AATGTACAAGTAGAGCTTCT+TGG + chr8_1:32978619-32978638 None:intergenic 35.0%
TACTTGTACATTAATGGTCC+TGG - chr8_1:32978627-32978646 Msa1190100:intron 35.0%
ATAAGCTTGGCCTATACAAT+GGG + chr8_1:32978830-32978849 None:intergenic 35.0%
CAAGTTGTATTAACAGACAG+TGG + chr8_1:32978902-32978921 None:intergenic 35.0%
AGTTAAACTTGTCATAGCAC+GGG - chr8_1:32978926-32978945 Msa1190100:intron 35.0%
CCTTAATCATATTTGTGGTG+GGG + chr8_1:32979114-32979133 None:intergenic 35.0%
GGAGTACAAAGAGGAATATT+TGG + chr8_1:32979466-32979485 None:intergenic 35.0%
AATGTCACAACAAAGCAGAA+TGG + chr8_1:32979487-32979506 None:intergenic 35.0%
AGTCAAAGACTCAATACTAC+AGG + chr8_1:32979547-32979566 None:intergenic 35.0%
! TTGAGTCTTTGACTTCTCTA+AGG - chr8_1:32979553-32979572 Msa1190100:intron 35.0%
ATCTATCTCAGAAAAAAGGC+AGG + chr8_1:32979710-32979729 None:intergenic 35.0%
ACCAAATAACTTCTTCTCTG+TGG - chr8_1:32979990-32980009 Msa1190100:intron 35.0%
TCCACAGAGAAGAAGTTATT+TGG + chr8_1:32979994-32980013 None:intergenic 35.0%
!! CAATTGACTCTGCTTTTACA+AGG - chr8_1:32980148-32980167 Msa1190100:intron 35.0%
AAAACGATTTGATGCACAAG+AGG - chr8_1:32980361-32980380 Msa1190100:CDS 35.0%
ACCTAGGAGGAGAATAAACA+CGG + chr8_1:32977234-32977253 None:intergenic 40.0%
ATTGTGTGAGATTACCTAGG+AGG + chr8_1:32977247-32977266 None:intergenic 40.0%
GAGATTGTGTGAGATTACCT+AGG + chr8_1:32977250-32977269 None:intergenic 40.0%
GTTTCCACCAAAATCTACTC+CGG - chr8_1:32977336-32977355 Msa1190100:three_prime_UTR 40.0%
!! CAATTTCAGGTAATGGGTTG+TGG - chr8_1:32977531-32977550 Msa1190100:CDS 40.0%
! CAAAAGCATAAGTGGTAGCA+CGG - chr8_1:32977867-32977886 Msa1190100:intron 40.0%
CTAATTAGTTGCTTCCCAAG+AGG - chr8_1:32977903-32977922 Msa1190100:intron 40.0%
ATGCTAACCAGAAACCAGTA+AGG - chr8_1:32978223-32978242 Msa1190100:CDS 40.0%
TGCTAACCAGAAACCAGTAA+GGG - chr8_1:32978224-32978243 Msa1190100:CDS 40.0%
! AACCAGTAAGGGCACAAATT+CGG - chr8_1:32978235-32978254 Msa1190100:CDS 40.0%
CATTGATAAGTTCCTTCACC+AGG + chr8_1:32978300-32978319 None:intergenic 40.0%
CTGGTGAAGGAACTTATCAA+TGG - chr8_1:32978298-32978317 Msa1190100:intron 40.0%
GCTTATCTAAGAACTGGTGA+AGG - chr8_1:32978383-32978402 Msa1190100:intron 40.0%
CTGGTGAAGGAACATAGTAA+TGG - chr8_1:32978396-32978415 Msa1190100:intron 40.0%
CGAGAACGTGTTATCTTCAT+CGG - chr8_1:32978522-32978541 Msa1190100:intron 40.0%
TTGTACATTAATGGTCCTGG+TGG - chr8_1:32978630-32978649 Msa1190100:intron 40.0%
TGTACATTAATGGTCCTGGT+GGG - chr8_1:32978631-32978650 Msa1190100:intron 40.0%
CCTATACAATGGGTGCATAT+AGG + chr8_1:32978820-32978839 None:intergenic 40.0%
CCTATATGCACCCATTGTAT+AGG - chr8_1:32978817-32978836 Msa1190100:intron 40.0%
CATAAGCTTGGCCTATACAA+TGG + chr8_1:32978831-32978850 None:intergenic 40.0%
CATTGTATAGGCCAAGCTTA+TGG - chr8_1:32978829-32978848 Msa1190100:intron 40.0%
GTTAAACTTGTCATAGCACG+GGG - chr8_1:32978927-32978946 Msa1190100:intron 40.0%
CCCCACCACAAATATGATTA+AGG - chr8_1:32979111-32979130 Msa1190100:intron 40.0%
ACATGTTAGGTACTCACCTT+TGG + chr8_1:32979247-32979266 None:intergenic 40.0%
! CAATCGACAGTTGATATTGC+TGG + chr8_1:32979315-32979334 None:intergenic 40.0%
AATGAAAAAGTTGGCAGGTC+CGG - chr8_1:32979343-32979362 Msa1190100:CDS 40.0%
! GGTCCGGTAGTTTGAAATTA+TGG - chr8_1:32979359-32979378 Msa1190100:CDS 40.0%
AAGCAGAATGGAGTACAAAG+AGG + chr8_1:32979475-32979494 None:intergenic 40.0%
TGGAGAACAATTCTTGCAAG+AGG + chr8_1:32979654-32979673 None:intergenic 40.0%
! TCTGAGTTGGCTAACAAAAC+AGG - chr8_1:32979863-32979882 Msa1190100:intron 40.0%
TCTTCGGTGATCTGAAGATA+TGG + chr8_1:32980329-32980348 None:intergenic 40.0%
AGATCACCGAAGACTTGAAA+AGG - chr8_1:32980336-32980355 Msa1190100:intron 40.0%
GATCACCGAAGACTTGAAAA+GGG - chr8_1:32980337-32980356 Msa1190100:intron 40.0%
!! AGGCATTGGTTAAGAACTCT+TGG - chr8_1:32980463-32980482 Msa1190100:intron 40.0%
! AAATGAAACGCGAAGCATTC+TGG + chr8_1:32980528-32980547 None:intergenic 40.0%
AAGGAATGGGAGACAAACAG+CGG + chr8_1:32977156-32977175 None:intergenic 45.0%
TGAACGACGATGGAAGGAAT+GGG + chr8_1:32977169-32977188 None:intergenic 45.0%
ATAAACACGGGGGGTTGAAA+CGG + chr8_1:32977221-32977240 None:intergenic 45.0%
TAGGAGGAGAATAAACACGG+GGG + chr8_1:32977231-32977250 None:intergenic 45.0%
CTAGGAGGAGAATAAACACG+GGG + chr8_1:32977232-32977251 None:intergenic 45.0%
CCTAGGAGGAGAATAAACAC+GGG + chr8_1:32977233-32977252 None:intergenic 45.0%
! CAATCCGGAGTAGATTTTGG+TGG + chr8_1:32977343-32977362 None:intergenic 45.0%
AAATGGGCACACGTGAAGAT+TGG + chr8_1:32977371-32977390 None:intergenic 45.0%
CCATTGTGTTTGCATCCAAC+AGG + chr8_1:32977672-32977691 None:intergenic 45.0%
CCTGTTGGATGCAAACACAA+TGG - chr8_1:32977669-32977688 Msa1190100:intron 45.0%
AACGATTGCTTCCAGCATCT+AGG + chr8_1:32977715-32977734 None:intergenic 45.0%
! TGGGATCGCAAAAGCATAAG+TGG - chr8_1:32977859-32977878 Msa1190100:intron 45.0%
TGATTAAGATCTCTCCTGGC+CGG + chr8_1:32977934-32977953 None:intergenic 45.0%
!! TTTGTGCCCTTACTGGTTTC+TGG + chr8_1:32978233-32978252 None:intergenic 45.0%
ATCCGAATTTGTGCCCTTAC+TGG + chr8_1:32978240-32978259 None:intergenic 45.0%
CAAATTCGGATGATGCCCAT+TGG - chr8_1:32978249-32978268 Msa1190100:intron 45.0%
CTTCACCAGGTGTTCTATAG+GGG + chr8_1:32978287-32978306 None:intergenic 45.0%
CCTTCACCAGGTGTTCTATA+GGG + chr8_1:32978288-32978307 None:intergenic 45.0%
TCCTTCACCAGGTGTTCTAT+AGG + chr8_1:32978289-32978308 None:intergenic 45.0%
GTACATTAATGGTCCTGGTG+GGG - chr8_1:32978632-32978651 Msa1190100:intron 45.0%
TCATTACTTACATCCCCACC+AGG + chr8_1:32978648-32978667 None:intergenic 45.0%
GTATCGTAGAGAGACATGCA+TGG + chr8_1:32978778-32978797 None:intergenic 45.0%
ATGCTGCAAGACCATAAGCT+TGG + chr8_1:32978843-32978862 None:intergenic 45.0%
TTGTCATAGCACGGGGTTTA+AGG - chr8_1:32978934-32978953 Msa1190100:intron 45.0%
TCCTACATTACGGGACTGTA+CGG - chr8_1:32978993-32979012 Msa1190100:intron 45.0%
CAAGGATGGCCTTTGTTGAA+TGG - chr8_1:32979042-32979061 Msa1190100:CDS 45.0%
TTCTCTACTTCTGTCGCCAA+AGG - chr8_1:32979228-32979247 Msa1190100:intron 45.0%
ATTGTTCTCCAATCTCCAGC+AGG - chr8_1:32979663-32979682 Msa1190100:intron 45.0%
AGTGAACTGACCTTCTCAAC+AGG + chr8_1:32979893-32979912 None:intergenic 45.0%
GTCAATGAGCCCATAGTCAA+GGG + chr8_1:32980387-32980406 None:intergenic 45.0%
TGTCAATGAGCCCATAGTCA+AGG + chr8_1:32980388-32980407 None:intergenic 45.0%
GGCTCATTGACAGAATTGTC+AGG - chr8_1:32980396-32980415 Msa1190100:CDS 45.0%
TTGACAGAATTGTCAGGCCA+CGG - chr8_1:32980402-32980421 Msa1190100:CDS 45.0%
TGGGAGACAAACAGCGGATA+GGG + chr8_1:32977150-32977169 None:intergenic 50.0%
ATGGGAGACAAACAGCGGAT+AGG + chr8_1:32977151-32977170 None:intergenic 50.0%
GTGAACGACGATGGAAGGAA+TGG + chr8_1:32977170-32977189 None:intergenic 50.0%
TTGAGGTGAACGACGATGGA+AGG + chr8_1:32977175-32977194 None:intergenic 50.0%
CATGTTGAGGTGAACGACGA+TGG + chr8_1:32977179-32977198 None:intergenic 50.0%
CGTCGTTCACCTCAACATGA+CGG - chr8_1:32977180-32977199 Msa1190100:three_prime_UTR 50.0%
AGGAGGAGAATAAACACGGG+GGG + chr8_1:32977230-32977249 None:intergenic 50.0%
CCCGTGTTTATTCTCCTCCT+AGG - chr8_1:32977230-32977249 Msa1190100:three_prime_UTR 50.0%
AACCACGATCGTGTTCGTAG+AGG - chr8_1:32977769-32977788 Msa1190100:intron 50.0%
TGTTCGTAGAGGACAAACCG+TGG - chr8_1:32977780-32977799 Msa1190100:intron 50.0%
TGCTTCCCAAGAGGGATTTC+CGG - chr8_1:32977912-32977931 Msa1190100:intron 50.0%
CACGACAAACTGTCTCCTGA+AGG + chr8_1:32977977-32977996 None:intergenic 50.0%
! GGGACTCTAGGAGTTCCAAT+GGG + chr8_1:32978267-32978286 None:intergenic 50.0%
GGTGTTCTATAGGGGACTCT+AGG + chr8_1:32978279-32978298 None:intergenic 50.0%
AGAGTCCCCTATAGAACACC+TGG - chr8_1:32978279-32978298 Msa1190100:intron 50.0%
CCCTATAGAACACCTGGTGA+AGG - chr8_1:32978285-32978304 Msa1190100:intron 50.0%
AGGAGTCTGCAAGCTTTGCA+TGG + chr8_1:32978800-32978819 None:intergenic 50.0%
GCAGCATTTCTACTTGCAGC+TGG - chr8_1:32978856-32978875 Msa1190100:intron 50.0%
TCTACTTGCAGCTGGAGAGA+AGG - chr8_1:32978864-32978883 Msa1190100:intron 50.0%
ACCGTACAGTCCCGTAATGT+AGG + chr8_1:32978997-32979016 None:intergenic 50.0%
AACTGACCTTCTCAACAGGC+TGG + chr8_1:32979889-32979908 None:intergenic 50.0%
CACAAGAGGCCCTTGACTAT+GGG - chr8_1:32980375-32980394 Msa1190100:CDS 50.0%
AAAAGCTGATGCACCTCGCA+AGG - chr8_1:32980430-32980449 Msa1190100:intron 50.0%
GGGGTTGAAACGGTCGTGTA+GGG + chr8_1:32977211-32977230 None:intergenic 55.0%
GTCCTCTACGAACACGATCG+TGG + chr8_1:32977774-32977793 None:intergenic 55.0%
! GGGGACTCTAGGAGTTCCAA+TGG + chr8_1:32978268-32978287 None:intergenic 55.0%
AACAGGCCAGCCTGTTGAGA+AGG - chr8_1:32979880-32979899 Msa1190100:intron 55.0%
GCACAAGAGGCCCTTGACTA+TGG - chr8_1:32980374-32980393 Msa1190100:CDS 55.0%
! GCATCAGCTTTTATGCGCCG+TGG + chr8_1:32980422-32980441 None:intergenic 55.0%
!! AAGGATGCTGGCTCAGGCAT+TGG - chr8_1:32980449-32980468 Msa1190100:intron 55.0%
AGGGTGCGACCGTCATGTTG+AGG + chr8_1:32977192-32977211 None:intergenic 60.0%
GGGGGTTGAAACGGTCGTGT+AGG + chr8_1:32977212-32977231 None:intergenic 60.0%
CCTGGCCGGAAATCCCTCTT+GGG + chr8_1:32977920-32977939 None:intergenic 60.0%
TCCTGGCCGGAAATCCCTCT+TGG + chr8_1:32977921-32977940 None:intergenic 60.0%
GAGCAGCTCCTGCTGGAGAT+TGG + chr8_1:32979674-32979693 None:intergenic 60.0%
GATGCACCTCGCAAGGATGC+TGG - chr8_1:32980437-32980456 Msa1190100:intron 60.0%
CCCAAGAGGGATTTCCGGCC+AGG - chr8_1:32977917-32977936 Msa1190100:intron 65.0%
TCTCCAGCAGGAGCTGCTCG+TGG - chr8_1:32979675-32979694 Msa1190100:intron 65.0%
CAGCAGGAGCTGCTCGTGGT+CGG - chr8_1:32979679-32979698 Msa1190100:intron 65.0%
AGCAGGAGCTGCTCGTGGTC+GGG - chr8_1:32979680-32979699 Msa1190100:intron 65.0%
CCTGAGCCAGCATCCTTGCG+AGG + chr8_1:32980446-32980465 None:intergenic 65.0%
!! CCTCGCAAGGATGCTGGCTC+AGG - chr8_1:32980443-32980462 Msa1190100:intron 65.0%
CGACCACGAGCAGCTCCTGC+TGG + chr8_1:32979681-32979700 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 32977126 32980771 32977126 ID=Msa1190100;Name=Msa1190100
chr8_1 mRNA 32977126 32980771 32977126 ID=Msa1190100-mRNA-1;Parent=Msa1190100;Name=Msa1190100-mRNA-1;_AED=0.17;_eAED=0.17;_QI=70|1|1|1|0.88|0.8|10|262|285
chr8_1 exon 32977126 32977293 32977126 ID=Msa1190100-mRNA-1:exon:11111;Parent=Msa1190100-mRNA-1
chr8_1 exon 32977328 32977559 32977328 ID=Msa1190100-mRNA-1:exon:11110;Parent=Msa1190100-mRNA-1
chr8_1 exon 32977996 32978091 32977996 ID=Msa1190100-mRNA-1:exon:11109;Parent=Msa1190100-mRNA-1
chr8_1 exon 32978196 32978264 32978196 ID=Msa1190100-mRNA-1:exon:11108;Parent=Msa1190100-mRNA-1
chr8_1 exon 32979012 32979128 32979012 ID=Msa1190100-mRNA-1:exon:11107;Parent=Msa1190100-mRNA-1
chr8_1 exon 32979241 32979378 32979241 ID=Msa1190100-mRNA-1:exon:11106;Parent=Msa1190100-mRNA-1
chr8_1 exon 32979556 32979676 32979556 ID=Msa1190100-mRNA-1:exon:11105;Parent=Msa1190100-mRNA-1
chr8_1 exon 32980358 32980436 32980358 ID=Msa1190100-mRNA-1:exon:11104;Parent=Msa1190100-mRNA-1
chr8_1 exon 32980519 32980562 32980519 ID=Msa1190100-mRNA-1:exon:11103;Parent=Msa1190100-mRNA-1
chr8_1 exon 32980646 32980771 32980646 ID=Msa1190100-mRNA-1:exon:11102;Parent=Msa1190100-mRNA-1
chr8_1 five_prime_UTR 32980702 32980771 32980702 ID=Msa1190100-mRNA-1:five_prime_utr;Parent=Msa1190100-mRNA-1
chr8_1 CDS 32980646 32980701 32980646 ID=Msa1190100-mRNA-1:cds;Parent=Msa1190100-mRNA-1
chr8_1 CDS 32980519 32980562 32980519 ID=Msa1190100-mRNA-1:cds;Parent=Msa1190100-mRNA-1
chr8_1 CDS 32980358 32980436 32980358 ID=Msa1190100-mRNA-1:cds;Parent=Msa1190100-mRNA-1
chr8_1 CDS 32979556 32979676 32979556 ID=Msa1190100-mRNA-1:cds;Parent=Msa1190100-mRNA-1
chr8_1 CDS 32979241 32979378 32979241 ID=Msa1190100-mRNA-1:cds;Parent=Msa1190100-mRNA-1
chr8_1 CDS 32979012 32979128 32979012 ID=Msa1190100-mRNA-1:cds;Parent=Msa1190100-mRNA-1
chr8_1 CDS 32978196 32978264 32978196 ID=Msa1190100-mRNA-1:cds;Parent=Msa1190100-mRNA-1
chr8_1 CDS 32977996 32978091 32977996 ID=Msa1190100-mRNA-1:cds;Parent=Msa1190100-mRNA-1
chr8_1 CDS 32977422 32977559 32977422 ID=Msa1190100-mRNA-1:cds;Parent=Msa1190100-mRNA-1
chr8_1 three_prime_UTR 32977328 32977421 32977328 ID=Msa1190100-mRNA-1:three_prime_utr;Parent=Msa1190100-mRNA-1
chr8_1 three_prime_UTR 32977126 32977293 32977126 ID=Msa1190100-mRNA-1:three_prime_utr;Parent=Msa1190100-mRNA-1
Gene Sequence

>Msa1190100

ATGACGGTCGCACCCTACACGACCGTTTCAACCCCCCGTGTTTATTCTCCTCCTAGTGTTTCCACCAAAATCTACTCCGGATTGAAACTCCAATCTTCACGTACTTTTGGAGCGTCTTCAATTTCATCTAATGTAAACTCTCAGTTTTTTGGTAAAGTTAACAAGGTTCTCAATTTCAGGTATGCTAACCAGAAACCAGTAAGGGCACAAATTCGGATGATGCCCATTGGAACTCCTAGAGTCCCCTATAGAACACCTGGTGAAGGAACTTATCAATGGGTTGATTTATGGAATGCCCTTTATCGAGAACGTGTTATCTTCATCGGACAAGAGATAGATGAAGAATTTAGCAATCAAATATTGGCAACGTTGCTGTATCTTGACAGTGTAGATAACTCCAAGAAGCTCTACTTGTACATTAATGGTCCTGGTGGGGATCTTACGCCATGCATGTCTCTCTACGATACCATGCAAAGCTTGCAGACTCCTATATGCACCCATTGTATAGGCCAAGCTTATGGTCTTGCAGCATTTCTACTTGCAGCTGGAGAGAAGGGAAATCGTACTGCAATGCCTCTTGCAAGAATTGTTCTCCAATCTCCAGCAGGAGCTGCTCGTGGTCGGGCTGATGACATACAAAATGAAGCAACTGAACTTCTTAGAATCAGAGATTATCTTTTCTCTGAGTTGGCTAACAAAACAGGCCAGCCTGTTGAGAAGATCACCGAAGACTTGAAAAGGGTAAAACGATTTGATGCACAAGAGGCCCTTGACTATGGGCTCATTGACAGAATTGTCAGGCCACGGCGCATAAAAGCTGATGCACCTCGCAAGGATGCTGGCTCAGGCATTGGTTAA

Protein sequence

>Msa1190100

MTVAPYTTVSTPRVYSPPSVSTKIYSGLKLQSSRTFGASSISSNVNSQFFGKVNKVLNFRYANQKPVRAQIRMMPIGTPRVPYRTPGEGTYQWVDLWNALYRERVIFIGQEIDEEFSNQILATLLYLDSVDNSKKLYLYINGPGGDLTPCMSLYDTMQSLQTPICTHCIGQAYGLAAFLLAAGEKGNRTAMPLARIVLQSPAGAARGRADDIQNEATELLRIRDYLFSELANKTGQPVEKITEDLKRVKRFDAQEALDYGLIDRIVRPRRIKADAPRKDAGSGIG*