Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435170 | RHN58267.1 | 100.000 | 189 | 0 | 0 | 1 | 189 | 1 | 189 | 1.60e-134 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435170 | sp|Q8VC52|RBPS2_MOUSE | 46.512 | 86 | 46 | 0 | 29 | 114 | 18 | 103 | 3.44e-17 | 79.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435170 | A0A396I608 | 100.000 | 189 | 0 | 0 | 1 | 189 | 1 | 189 | 7.66e-135 | 389 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010490 | Msa1435170 | -0.828224 | 1.012717e-54 | -8.615850e-47 |
| Msa0010500 | Msa1435170 | -0.835253 | 1.868400e-56 | -8.615850e-47 |
| Msa0010900 | Msa1435170 | 0.837869 | 4.029727e-57 | -8.615850e-47 |
| Msa0020390 | Msa1435170 | -0.808033 | 3.777616e-50 | -8.615850e-47 |
| Msa0033110 | Msa1435170 | -0.804807 | 1.809351e-49 | -8.615850e-47 |
| Msa0048180 | Msa1435170 | -0.825422 | 4.729489e-54 | -8.615850e-47 |
| Msa0052300 | Msa1435170 | 0.804399 | 2.201205e-49 | -8.615850e-47 |
| Msa0052350 | Msa1435170 | 0.811888 | 5.589786e-51 | -8.615850e-47 |
| Msa0068020 | Msa1435170 | -0.840509 | 8.332852e-58 | -8.615850e-47 |
| Msa0072420 | Msa1435170 | -0.811699 | 6.144878e-51 | -8.615850e-47 |
| Msa0090520 | Msa1435170 | -0.836870 | 7.262692e-57 | -8.615850e-47 |
| Msa0091410 | Msa1435170 | -0.801477 | 8.840462e-49 | -8.615850e-47 |
| Msa0093010 | Msa1435170 | -0.836288 | 1.021552e-56 | -8.615850e-47 |
| Msa0103790 | Msa1435170 | -0.815835 | 7.542783e-52 | -8.615850e-47 |
| Msa1352890 | Msa1435170 | -0.810268 | 1.254340e-50 | -8.615850e-47 |
| Msa1360980 | Msa1435170 | -0.801409 | 9.128703e-49 | -8.615850e-47 |
| Msa1364210 | Msa1435170 | -0.801881 | 7.303521e-49 | -8.615850e-47 |
| Msa1370590 | Msa1435170 | -0.817434 | 3.304161e-52 | -8.615850e-47 |
| Msa1384100 | Msa1435170 | -0.816558 | 5.199338e-52 | -8.615850e-47 |
| Msa1407190 | Msa1435170 | -0.810119 | 1.350206e-50 | -8.615850e-47 |
| Msa1410130 | Msa1435170 | 0.804778 | 1.834734e-49 | -8.615850e-47 |
| Msa1414510 | Msa1435170 | 0.851026 | 1.159839e-60 | -8.615850e-47 |
| Msa1418960 | Msa1435170 | 0.814031 | 1.894805e-51 | -8.615850e-47 |
| Msa1431560 | Msa1435170 | 0.811647 | 6.305857e-51 | -8.615850e-47 |
| Msa1435170 | Msa1437860 | -0.807593 | 4.686462e-50 | -8.615850e-47 |
| Msa1435170 | Msa1444120 | -0.816001 | 6.925259e-52 | -8.615850e-47 |
| Msa1435170 | Msa1454680 | -0.832927 | 7.149455e-56 | -8.615850e-47 |
| Msa1435170 | Msa1459960 | -0.802957 | 4.384509e-49 | -8.615850e-47 |
| Msa0603570 | Msa1435170 | -0.805007 | 1.643117e-49 | -8.615850e-47 |
| Msa0615580 | Msa1435170 | -0.818336 | 2.067326e-52 | -8.615850e-47 |
| Msa0642970 | Msa1435170 | -0.833407 | 5.430044e-56 | -8.615850e-47 |
| Msa0662630 | Msa1435170 | -0.822074 | 2.877540e-53 | -8.615850e-47 |
| Msa0666230 | Msa1435170 | -0.832132 | 1.125387e-55 | -8.615850e-47 |
| Msa0682680 | Msa1435170 | -0.817156 | 3.816743e-52 | -8.615850e-47 |
| Msa0693210 | Msa1435170 | -0.805586 | 1.242529e-49 | -8.615850e-47 |
| Msa0741440 | Msa1435170 | -0.816084 | 6.635508e-52 | -8.615850e-47 |
| Msa0794050 | Msa1435170 | -0.804007 | 2.655789e-49 | -8.615850e-47 |
| Msa0800370 | Msa1435170 | -0.839769 | 1.299388e-57 | -8.615850e-47 |
| Msa0808800 | Msa1435170 | -0.819797 | 9.617383e-53 | -8.615850e-47 |
| Msa0818770 | Msa1435170 | -0.816180 | 6.316671e-52 | -8.615850e-47 |
| Msa0822310 | Msa1435170 | 0.800285 | 1.548106e-48 | -8.615850e-47 |
| Msa0833190 | Msa1435170 | 0.816510 | 5.329264e-52 | -8.615850e-47 |
| Msa0838370 | Msa1435170 | -0.805793 | 1.124448e-49 | -8.615850e-47 |
| Msa0136120 | Msa1435170 | -0.821318 | 4.302649e-53 | -8.615850e-47 |
| Msa0137990 | Msa1435170 | -0.836170 | 1.094960e-56 | -8.615850e-47 |
| Msa0140820 | Msa1435170 | -0.807490 | 4.927343e-50 | -8.615850e-47 |
| Msa0171410 | Msa1435170 | -0.804424 | 2.174414e-49 | -8.615850e-47 |
| Msa0183870 | Msa1435170 | -0.800725 | 1.259577e-48 | -8.615850e-47 |
| Msa0183900 | Msa1435170 | -0.829832 | 4.128090e-55 | -8.615850e-47 |
| Msa0190590 | Msa1435170 | -0.811422 | 7.058882e-51 | -8.615850e-47 |
| Msa0191080 | Msa1435170 | -0.818747 | 1.667817e-52 | -8.615850e-47 |
| Msa0204960 | Msa1435170 | -0.829476 | 5.039781e-55 | -8.615850e-47 |
| Msa0206690 | Msa1435170 | -0.806020 | 1.007566e-49 | -8.615850e-47 |
| Msa0207670 | Msa1435170 | -0.825150 | 5.484826e-54 | -8.615850e-47 |
| Msa0209080 | Msa1435170 | -0.825730 | 3.996602e-54 | -8.615850e-47 |
| Msa0209350 | Msa1435170 | -0.809660 | 1.695829e-50 | -8.615850e-47 |
| Msa0209500 | Msa1435170 | -0.802125 | 6.505967e-49 | -8.615850e-47 |
| Msa1226610 | Msa1435170 | -0.810309 | 1.229132e-50 | -8.615850e-47 |
| Msa1254730 | Msa1435170 | -0.813256 | 2.807063e-51 | -8.615850e-47 |
| Msa1261680 | Msa1435170 | 0.816627 | 5.016812e-52 | -8.615850e-47 |
| Msa1262890 | Msa1435170 | -0.824491 | 7.843493e-54 | -8.615850e-47 |
| Msa1294820 | Msa1435170 | -0.800692 | 1.279254e-48 | -8.615850e-47 |
| Msa1296830 | Msa1435170 | -0.802045 | 6.759073e-49 | -8.615850e-47 |
| Msa1307180 | Msa1435170 | -0.821369 | 4.189018e-53 | -8.615850e-47 |
| Msa1316360 | Msa1435170 | -0.818399 | 2.000530e-52 | -8.615850e-47 |
| Msa1329540 | Msa1435170 | -0.805021 | 1.632192e-49 | -8.615850e-47 |
| Msa1336560 | Msa1435170 | -0.845363 | 4.256555e-59 | -8.615850e-47 |
| Msa1341060 | Msa1435170 | -0.816852 | 4.465511e-52 | -8.615850e-47 |
| Msa1343290 | Msa1435170 | -0.804908 | 1.723733e-49 | -8.615850e-47 |
| Msa0384660 | Msa1435170 | 0.806901 | 6.566661e-50 | -8.615850e-47 |
| Msa0385500 | Msa1435170 | -0.845348 | 4.296839e-59 | -8.615850e-47 |
| Msa0419720 | Msa1435170 | -0.803142 | 4.014591e-49 | -8.615850e-47 |
| Msa0423750 | Msa1435170 | -0.821045 | 4.974285e-53 | -8.615850e-47 |
| Msa0443390 | Msa1435170 | -0.826988 | 2.004605e-54 | -8.615850e-47 |
| Msa0980540 | Msa1435170 | -0.821320 | 4.299771e-53 | -8.615850e-47 |
| Msa1019240 | Msa1435170 | -0.805929 | 1.052815e-49 | -8.615850e-47 |
| Msa1019260 | Msa1435170 | -0.806414 | 8.322605e-50 | -8.615850e-47 |
| Msa1039900 | Msa1435170 | -0.835888 | 1.291046e-56 | -8.615850e-47 |
| Msa1089320 | Msa1435170 | -0.800903 | 1.158701e-48 | -8.615850e-47 |
| Msa1104210 | Msa1435170 | -0.804418 | 2.181340e-49 | -8.615850e-47 |
| Msa0244980 | Msa1435170 | -0.819427 | 1.168356e-52 | -8.615850e-47 |
| Msa0249580 | Msa1435170 | -0.817795 | 2.740257e-52 | -8.615850e-47 |
| Msa0257490 | Msa1435170 | -0.832962 | 7.006578e-56 | -8.615850e-47 |
| Msa0269470 | Msa1435170 | -0.840685 | 7.492568e-58 | -8.615850e-47 |
| Msa0275360 | Msa1435170 | -0.816568 | 5.170219e-52 | -8.615850e-47 |
| Msa0281530 | Msa1435170 | -0.831294 | 1.810640e-55 | -8.615850e-47 |
| Msa0289280 | Msa1435170 | 0.802027 | 6.815724e-49 | -8.615850e-47 |
| Msa0296790 | Msa1435170 | -0.825432 | 4.703583e-54 | -8.615850e-47 |
| Msa0320590 | Msa1435170 | -0.812777 | 3.574707e-51 | -8.615850e-47 |
| Msa0348830 | Msa1435170 | -0.818623 | 1.779595e-52 | -8.615850e-47 |
| Msa0357900 | Msa1435170 | -0.805740 | 1.153588e-49 | -8.615850e-47 |
| Msa1122310 | Msa1435170 | 0.831802 | 1.357712e-55 | -8.615850e-47 |
| Msa1124070 | Msa1435170 | -0.801882 | 7.298830e-49 | -8.615850e-47 |
| Msa1126830 | Msa1435170 | -0.844722 | 6.341491e-59 | -8.615850e-47 |
| Msa1135800 | Msa1435170 | 0.822666 | 2.096698e-53 | -8.615850e-47 |
| Msa1135810 | Msa1435170 | 0.800028 | 1.746050e-48 | -8.615850e-47 |
| Msa1158640 | Msa1435170 | 0.841965 | 3.450851e-58 | -8.615850e-47 |
| Msa1160740 | Msa1435170 | 0.811488 | 6.827109e-51 | -8.615850e-47 |
| Msa1165780 | Msa1435170 | -0.860259 | 2.339036e-63 | -8.615850e-47 |
| Msa1166870 | Msa1435170 | -0.819612 | 1.060211e-52 | -8.615850e-47 |
| Msa1206650 | Msa1435170 | -0.819405 | 1.181562e-52 | -8.615850e-47 |
| Msa1211830 | Msa1435170 | -0.800595 | 1.338704e-48 | -8.615850e-47 |
| Msa0482940 | Msa1435170 | -0.813437 | 2.561331e-51 | -8.615850e-47 |
| Msa0485710 | Msa1435170 | -0.803042 | 4.209468e-49 | -8.615850e-47 |
| Msa0509950 | Msa1435170 | 0.805022 | 1.631202e-49 | -8.615850e-47 |
| Msa0511770 | Msa1435170 | -0.823204 | 1.571304e-53 | -8.615850e-47 |
| Msa0527020 | Msa1435170 | -0.808435 | 3.101122e-50 | -8.615850e-47 |
| Msa0544840 | Msa1435170 | -0.811746 | 5.999307e-51 | -8.615850e-47 |
| Msa0547160 | Msa1435170 | -0.823260 | 1.523967e-53 | -8.615850e-47 |
| Msa0581110 | Msa1435170 | -0.842892 | 1.959460e-58 | -8.615850e-47 |
| Msa0600080 | Msa1435170 | -0.800736 | 1.252783e-48 | -8.615850e-47 |
| Msa0858440 | Msa1435170 | -0.813292 | 2.756056e-51 | -8.615850e-47 |
| Msa0865030 | Msa1435170 | -0.806744 | 7.089536e-50 | -8.615850e-47 |
| Msa0872250 | Msa1435170 | -0.807784 | 4.267556e-50 | -8.615850e-47 |
| Msa0897200 | Msa1435170 | -0.808225 | 3.438036e-50 | -8.615850e-47 |
| Msa0944200 | Msa1435170 | -0.820173 | 7.886819e-53 | -8.615850e-47 |
| Msa0958000 | Msa1435170 | -0.814127 | 1.804859e-51 | -8.615850e-47 |
| Msa0974950 | Msa1435170 | -0.802628 | 5.126278e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435170 | MtrunA17_Chr4g0000521 | 100.000 | 189 | 0 | 0 | 1 | 189 | 1 | 189 | 1.47e-138 | 389 |
| Msa1435170 | MtrunA17_Chr5g0401861 | 42.857 | 112 | 59 | 3 | 27 | 133 | 71 | 182 | 1.24e-19 | 84.7 |
| Msa1435170 | MtrunA17_Chr8g0341911 | 36.232 | 138 | 79 | 4 | 35 | 167 | 20 | 153 | 4.84e-18 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435170 | AT3G21215.3 | 59.259 | 189 | 54 | 1 | 1 | 166 | 1 | 189 | 2.92e-60 | 190 |
| Msa1435170 | AT3G21215.2 | 59.259 | 189 | 54 | 1 | 1 | 166 | 1 | 189 | 5.16e-60 | 190 |
| Msa1435170 | AT3G21215.1 | 59.259 | 189 | 54 | 1 | 1 | 166 | 1 | 189 | 5.16e-60 | 190 |
| Msa1435170 | AT3G21215.4 | 59.259 | 189 | 54 | 1 | 1 | 166 | 1 | 189 | 5.16e-60 | 190 |
| Msa1435170 | AT2G42240.4 | 39.024 | 123 | 72 | 2 | 24 | 145 | 38 | 158 | 5.36e-20 | 85.5 |
| Msa1435170 | AT2G42240.3 | 39.024 | 123 | 72 | 2 | 24 | 145 | 38 | 158 | 5.97e-20 | 85.1 |
| Msa1435170 | AT2G42240.1 | 39.024 | 123 | 72 | 2 | 24 | 145 | 38 | 158 | 6.48e-20 | 85.1 |
| Msa1435170 | AT3G13700.2 | 35.036 | 137 | 75 | 4 | 7 | 139 | 18 | 144 | 5.63e-16 | 74.3 |
| Msa1435170 | AT3G13700.1 | 30.968 | 155 | 75 | 4 | 7 | 139 | 18 | 162 | 2.10e-12 | 64.7 |
Find 70 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCCGCCACCACCTGTTT+GGG | 0.218443 | tig0027616:+58526 | Msa1435170:CDS |
| TCTCTCTCTTTAACATCTTC+TGG | 0.236900 | tig0027616:-57742 | None:intergenic |
| CCGGATTTACTTCAAAAGTT+AGG | 0.257743 | tig0027616:+57485 | Msa1435170:five_prime_UTR |
| TGGAAGACCCGTTATAAATA+TGG | 0.265459 | tig0027616:-57722 | None:intergenic |
| CGGCGGCGGGAGGCCATTGC+TGG | 0.265928 | tig0027616:-57574 | None:intergenic |
| ATCCTCCGCCACCACCTGTT+TGG | 0.292096 | tig0027616:+58525 | Msa1435170:CDS |
| GAAGGAATAGCGGTGGGTTG+AGG | 0.329734 | tig0027616:-57608 | None:intergenic |
| GGAGGAGGAGCGGCGGCGGG+AGG | 0.344741 | tig0027616:-57584 | None:intergenic |
| ATAGCGGTGGGTTGAGGAGG+AGG | 0.368075 | tig0027616:-57602 | None:intergenic |
| AGGAGGAGGAGGAGCGGCGG+CGG | 0.380056 | tig0027616:-57588 | None:intergenic |
| GGAGGCCATTGCTGGTGGTA+AGG | 0.381880 | tig0027616:-57566 | None:intergenic |
| TGCTGCTAAAGATATTCTTC+AGG | 0.389765 | tig0027616:+57873 | Msa1435170:CDS |
| GGCATTGGTACTTGTGCAAC+AGG | 0.393304 | tig0027616:-58911 | None:intergenic |
| TTACTTCAAAAGTTAGGGTT+AGG | 0.393352 | tig0027616:+57491 | Msa1435170:five_prime_UTR |
| CGGATTTACTTCAAAAGTTA+GGG | 0.402484 | tig0027616:+57486 | Msa1435170:five_prime_UTR |
| TACCCATGTGGTCCCCAAAC+AGG | 0.424369 | tig0027616:-58539 | None:intergenic |
| GGTTCGAACCATATTTATAA+CGG | 0.432197 | tig0027616:+57714 | Msa1435170:intron |
| TTTCAAAGCCGAAAAGCCTA+TGG | 0.434501 | tig0027616:+57816 | Msa1435170:CDS |
| GGAATAGCGGTGGGTTGAGG+AGG | 0.444814 | tig0027616:-57605 | None:intergenic |
| CCCCAAACAGGTGGTGGCGG+AGG | 0.452926 | tig0027616:-58527 | None:intergenic |
| GTTCGAACCATATTTATAAC+GGG | 0.455076 | tig0027616:+57715 | Msa1435170:CDS |
| GAGGCCATTGCTGGTGGTAA+GGG | 0.456679 | tig0027616:-57565 | None:intergenic |
| GGATCATACGGAGGAGGAGG+TGG | 0.460265 | tig0027616:-58875 | None:intergenic |
| GCCATTGCTGGTGGTAAGGG+TGG | 0.461353 | tig0027616:-57562 | None:intergenic |
| GGAGGAGGAGGAGCGGCGGC+GGG | 0.463504 | tig0027616:-57587 | None:intergenic |
| AACCTTTGTCGATGGTTACC+TGG | 0.465772 | tig0027616:+57772 | Msa1435170:CDS |
| TCATACGGAGGAGGAGGTGG+TGG | 0.465780 | tig0027616:-58872 | None:intergenic |
| GCTGGGGATTATAATCATAC+TGG | 0.472133 | tig0027616:+58479 | Msa1435170:CDS |
| AGTAAACGGTTACGAACAGC+TGG | 0.481756 | tig0027616:+58461 | Msa1435170:CDS |
| GCAACAGGATAGCCTGCATA+TGG | 0.482662 | tig0027616:-58896 | None:intergenic |
| GTGGTAAGGGTGGATGCCGT+TGG | 0.484200 | tig0027616:-57552 | None:intergenic |
| TTCTCAAGTTCAAGTTGAAG+TGG | 0.489189 | tig0027616:-57442 | None:intergenic |
| TGTGGTCCCCAAACAGGTGG+TGG | 0.492889 | tig0027616:-58533 | None:intergenic |
| GGTGGTGGCGGAGGATGAAA+AGG | 0.515482 | tig0027616:-58518 | None:intergenic |
| AGTACTACCTCTTCGGAAGA+AGG | 0.521807 | tig0027616:-57632 | None:intergenic |
| GCGGTGGGTTGAGGAGGAGG+AGG | 0.522344 | tig0027616:-57599 | None:intergenic |
| GGTCCCCAAACAGGTGGTGG+CGG | 0.523992 | tig0027616:-58530 | None:intergenic |
| CGGCGGGAGGCCATTGCTGG+TGG | 0.524594 | tig0027616:-57571 | None:intergenic |
| TGAAGGAAGTACTACCTCTT+CGG | 0.528081 | tig0027616:-57639 | None:intergenic |
| CCACCTGTTTGGGGACCACA+TGG | 0.534905 | tig0027616:+58536 | Msa1435170:CDS |
| TCCACCCTTACCACCAGCAA+TGG | 0.538447 | tig0027616:+57561 | Msa1435170:CDS |
| AACTTCAAAACCTTTGTCGA+TGG | 0.541598 | tig0027616:+57764 | Msa1435170:CDS |
| TGAAGAACAGATTTAGCCTC+GGG | 0.546026 | tig0027616:-57910 | None:intergenic |
| TCCTTCTCCTTCTTCCGAAG+AGG | 0.546449 | tig0027616:+57625 | Msa1435170:CDS |
| TAGCCTGCATATGGATCATA+CGG | 0.548541 | tig0027616:-58887 | None:intergenic |
| CCTCCGCCACCACCTGTTTG+GGG | 0.555676 | tig0027616:+58527 | Msa1435170:CDS |
| AACTGAGAAGCTTCAAAACC+AGG | 0.556577 | tig0027616:-57790 | None:intergenic |
| TTCAAAGCCGAAAAGCCTAT+GGG | 0.558458 | tig0027616:+57817 | Msa1435170:CDS |
| CCTCCGTATGATCCATATGC+AGG | 0.559113 | tig0027616:+58882 | Msa1435170:CDS |
| ATCTGTTCTTCATACTGAGA+TGG | 0.561919 | tig0027616:+57921 | Msa1435170:CDS |
| GAAGGAGAAGGAATAGCGGT+GGG | 0.564113 | tig0027616:-57614 | None:intergenic |
| GATTCATTCATGGCAGCCAA+CGG | 0.570409 | tig0027616:+57536 | Msa1435170:exon |
| ATGAAGAACAGATTTAGCCT+CGG | 0.577945 | tig0027616:-57911 | None:intergenic |
| TATGGATCATACGGAGGAGG+AGG | 0.580137 | tig0027616:-58878 | None:intergenic |
| ATAGACACAGGAGCAGGCAT+TGG | 0.580929 | tig0027616:-58926 | None:intergenic |
| GGCGGAGGATGAAAAGGAGA+CGG | 0.593468 | tig0027616:-58512 | None:intergenic |
| ACCTCTTCGGAAGAAGGAGA+AGG | 0.602484 | tig0027616:-57626 | None:intergenic |
| GCATATGGATCATACGGAGG+AGG | 0.606969 | tig0027616:-58881 | None:intergenic |
| TTGAAGAGAGCAAAACCCAT+AGG | 0.622823 | tig0027616:-57832 | None:intergenic |
| TTAGCAGCAATAGCTTGATG+AGG | 0.625830 | tig0027616:-57859 | None:intergenic |
| AGAAGGAGAAGGAATAGCGG+TGG | 0.646815 | tig0027616:-57615 | None:intergenic |
| CCATGTGGTCCCCAAACAGG+TGG | 0.654893 | tig0027616:-58536 | None:intergenic |
| CACCTGTTTGGGGACCACAT+GGG | 0.665991 | tig0027616:+58537 | Msa1435170:CDS |
| TGTTTAGAGTAAAACGACAC+CGG | 0.666550 | tig0027616:+57466 | Msa1435170:five_prime_UTR |
| AACCAGGTAACCATCGACAA+AGG | 0.666576 | tig0027616:-57774 | None:intergenic |
| TTTGTGTTAGTTTACCCATG+TGG | 0.672879 | tig0027616:-58551 | None:intergenic |
| GTAAACGGTTACGAACAGCT+GGG | 0.684153 | tig0027616:+58462 | Msa1435170:CDS |
| TAAACGGTTACGAACAGCTG+GGG | 0.691927 | tig0027616:+58463 | Msa1435170:CDS |
| GGAAGAAGGAGAAGGAATAG+CGG | 0.729192 | tig0027616:-57618 | None:intergenic |
| CCTGCATATGGATCATACGG+AGG | 0.734736 | tig0027616:-58884 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAATTTTTATTCAATTATG+TGG | + | tig0027616:57999-58018 | Msa1435170:intron | 15.0% |
| !!! | CTTATTTTGATTTTTTTTGT+AGG | + | tig0027616:58407-58426 | Msa1435170:intron | 15.0% |
| !!! | TCAATTTTTATTCAATTATG+TGG | + | tig0027616:57999-58018 | Msa1435170:intron | 15.0% |
| !!! | CTTATTTTGATTTTTTTTGT+AGG | + | tig0027616:58407-58426 | Msa1435170:intron | 15.0% |
| !!! | CAATTCAATTATACTTTTTC+AGG | + | tig0027616:57693-57712 | Msa1435170:intron | 20.0% |
| !!! | TTTAAAATAATCACATGTGT+CGG | - | tig0027616:58126-58145 | None:intergenic | 20.0% |
| !! | TTTAGACTAAATTATGGTAT+TGG | + | tig0027616:58253-58272 | Msa1435170:intron | 20.0% |
| !!! | TTGATTTTTTTTGTAGGAAT+AGG | + | tig0027616:58413-58432 | Msa1435170:intron | 20.0% |
| !! | CAAACTTTCAGTTAATAATA+TGG | - | tig0027616:58822-58841 | None:intergenic | 20.0% |
| !!! | TGAAAGTTTGTTTGTTTTTA+TGG | + | tig0027616:58832-58851 | Msa1435170:intron | 20.0% |
| !!! | CAATTCAATTATACTTTTTC+AGG | + | tig0027616:57693-57712 | Msa1435170:intron | 20.0% |
| !!! | TTTAAAATAATCACATGTGT+CGG | - | tig0027616:58126-58145 | None:intergenic | 20.0% |
| !! | TTTAGACTAAATTATGGTAT+TGG | + | tig0027616:58253-58272 | Msa1435170:intron | 20.0% |
| !!! | TTGATTTTTTTTGTAGGAAT+AGG | + | tig0027616:58413-58432 | Msa1435170:intron | 20.0% |
| !! | CAAACTTTCAGTTAATAATA+TGG | - | tig0027616:58822-58841 | None:intergenic | 20.0% |
| !!! | TGAAAGTTTGTTTGTTTTTA+TGG | + | tig0027616:58832-58851 | Msa1435170:intron | 20.0% |
| ! | GAAAAAAAGAAAAAGAAGAG+AGG | + | tig0027616:57411-57430 | Msa1435170:five_prime_UTR | 25.0% |
| !!! | TGTGAATTTTGATTCATTCA+TGG | + | tig0027616:57526-57545 | Msa1435170:exon | 25.0% |
| ! | AAATAATAGAAGAAGAGTGA+AGG | - | tig0027616:57659-57678 | None:intergenic | 25.0% |
| ! | AAAAATCTCTTTGTTAAACG+AGG | + | tig0027616:57949-57968 | Msa1435170:CDS | 25.0% |
| !!! | TTGCTTTTGATCAAAGTAAA+CGG | + | tig0027616:58447-58466 | Msa1435170:CDS | 25.0% |
| ! | AAAACAATGTTGTCAAATAG+TGG | + | tig0027616:58613-58632 | Msa1435170:intron | 25.0% |
| !! | GTTTTTATGGTCTAGATATA+TGG | + | tig0027616:58845-58864 | Msa1435170:intron | 25.0% |
| ! | GAAAAAAAGAAAAAGAAGAG+AGG | + | tig0027616:57411-57430 | Msa1435170:five_prime_UTR | 25.0% |
| !!! | TGTGAATTTTGATTCATTCA+TGG | + | tig0027616:57526-57545 | Msa1435170:exon | 25.0% |
| ! | AAATAATAGAAGAAGAGTGA+AGG | - | tig0027616:57659-57678 | None:intergenic | 25.0% |
| ! | AAAAATCTCTTTGTTAAACG+AGG | + | tig0027616:57949-57968 | Msa1435170:CDS | 25.0% |
| !!! | TTGCTTTTGATCAAAGTAAA+CGG | + | tig0027616:58447-58466 | Msa1435170:CDS | 25.0% |
| ! | AAAACAATGTTGTCAAATAG+TGG | + | tig0027616:58613-58632 | Msa1435170:intron | 25.0% |
| !! | GTTTTTATGGTCTAGATATA+TGG | + | tig0027616:58845-58864 | Msa1435170:intron | 25.0% |
| !!! | CCTAACTTTTGAAGTAAATC+CGG | - | tig0027616:57488-57507 | None:intergenic | 30.0% |
| CGGATTTACTTCAAAAGTTA+GGG | + | tig0027616:57486-57505 | Msa1435170:five_prime_UTR | 30.0% | |
| TTACTTCAAAAGTTAGGGTT+AGG | + | tig0027616:57491-57510 | Msa1435170:five_prime_UTR | 30.0% | |
| GGTTCGAACCATATTTATAA+CGG | + | tig0027616:57714-57733 | Msa1435170:intron | 30.0% | |
| GTTCGAACCATATTTATAAC+GGG | + | tig0027616:57715-57734 | Msa1435170:CDS | 30.0% | |
| CGGTGATTTAGACTAAATTA+TGG | + | tig0027616:58247-58266 | Msa1435170:intron | 30.0% | |
| TTTGAATTCGGAGTTAAGTT+TGG | - | tig0027616:58348-58367 | None:intergenic | 30.0% | |
| TGTTGTGAAATAGTTGCTAT+AGG | + | tig0027616:58698-58717 | Msa1435170:intron | 30.0% | |
| GTTGTGAAATAGTTGCTATA+GGG | + | tig0027616:58699-58718 | Msa1435170:intron | 30.0% | |
| TTGTGAAATAGTTGCTATAG+GGG | + | tig0027616:58700-58719 | Msa1435170:intron | 30.0% | |
| !!! | CCTAACTTTTGAAGTAAATC+CGG | - | tig0027616:57488-57507 | None:intergenic | 30.0% |
| CGGATTTACTTCAAAAGTTA+GGG | + | tig0027616:57486-57505 | Msa1435170:five_prime_UTR | 30.0% | |
| TTACTTCAAAAGTTAGGGTT+AGG | + | tig0027616:57491-57510 | Msa1435170:five_prime_UTR | 30.0% | |
| GGTTCGAACCATATTTATAA+CGG | + | tig0027616:57714-57733 | Msa1435170:intron | 30.0% | |
| GTTCGAACCATATTTATAAC+GGG | + | tig0027616:57715-57734 | Msa1435170:CDS | 30.0% | |
| CGGTGATTTAGACTAAATTA+TGG | + | tig0027616:58247-58266 | Msa1435170:intron | 30.0% | |
| TTTGAATTCGGAGTTAAGTT+TGG | - | tig0027616:58348-58367 | None:intergenic | 30.0% | |
| TGTTGTGAAATAGTTGCTAT+AGG | + | tig0027616:58698-58717 | Msa1435170:intron | 30.0% | |
| GTTGTGAAATAGTTGCTATA+GGG | + | tig0027616:58699-58718 | Msa1435170:intron | 30.0% | |
| TTGTGAAATAGTTGCTATAG+GGG | + | tig0027616:58700-58719 | Msa1435170:intron | 30.0% | |
| !! | TTCTCAAGTTCAAGTTGAAG+TGG | - | tig0027616:57445-57464 | None:intergenic | 35.0% |
| ! | TGTTTAGAGTAAAACGACAC+CGG | + | tig0027616:57466-57485 | Msa1435170:five_prime_UTR | 35.0% |
| CCGGATTTACTTCAAAAGTT+AGG | + | tig0027616:57485-57504 | Msa1435170:five_prime_UTR | 35.0% | |
| TGGAAGACCCGTTATAAATA+TGG | - | tig0027616:57725-57744 | None:intergenic | 35.0% | |
| TCTCTCTCTTTAACATCTTC+TGG | - | tig0027616:57745-57764 | None:intergenic | 35.0% | |
| AACTTCAAAACCTTTGTCGA+TGG | + | tig0027616:57764-57783 | Msa1435170:CDS | 35.0% | |
| TGCTGCTAAAGATATTCTTC+AGG | + | tig0027616:57873-57892 | Msa1435170:CDS | 35.0% | |
| ATGAAGAACAGATTTAGCCT+CGG | - | tig0027616:57914-57933 | None:intergenic | 35.0% | |
| ATCTGTTCTTCATACTGAGA+TGG | + | tig0027616:57921-57940 | Msa1435170:CDS | 35.0% | |
| TTATGTGTCTGTGTCATGTT+TGG | + | tig0027616:58169-58188 | Msa1435170:intron | 35.0% | |
| TCAACTATGAATCACGTACA+AGG | - | tig0027616:58198-58217 | None:intergenic | 35.0% | |
| TCTCACAATAAGTGCATGTT+TGG | + | tig0027616:58219-58238 | Msa1435170:intron | 35.0% | |
| ! | TAAGTGCATGTTTGGAATGA+CGG | + | tig0027616:58227-58246 | Msa1435170:intron | 35.0% |
| !! | TGTGATTTGTTGAAACTCCA+AGG | + | tig0027616:58282-58301 | Msa1435170:intron | 35.0% |
| ATTTGAACAAACCTCTACCT+TGG | - | tig0027616:58302-58321 | None:intergenic | 35.0% | |
| ! | GTAGAGGTTTGTTCAAATCA+TGG | + | tig0027616:58304-58323 | Msa1435170:intron | 35.0% |
| TCTTAGTGCGTGTTTGAATT+CGG | - | tig0027616:58360-58379 | None:intergenic | 35.0% | |
| ! | TTTGTGTTAGTTTACCCATG+TGG | - | tig0027616:58554-58573 | None:intergenic | 35.0% |
| CTAATTGCACTGAACAATAG+TGG | - | tig0027616:58732-58751 | None:intergenic | 35.0% | |
| ! | AGAAAAACCGATATTTTCCG+CGG | + | tig0027616:58750-58769 | Msa1435170:intron | 35.0% |
| AGTCGAGCACAACAATTAAT+AGG | - | tig0027616:57378-57397 | None:intergenic | 35.0% | |
| !! | TTCTCAAGTTCAAGTTGAAG+TGG | - | tig0027616:57445-57464 | None:intergenic | 35.0% |
| ! | TGTTTAGAGTAAAACGACAC+CGG | + | tig0027616:57466-57485 | Msa1435170:five_prime_UTR | 35.0% |
| CCGGATTTACTTCAAAAGTT+AGG | + | tig0027616:57485-57504 | Msa1435170:five_prime_UTR | 35.0% | |
| TGGAAGACCCGTTATAAATA+TGG | - | tig0027616:57725-57744 | None:intergenic | 35.0% | |
| TCTCTCTCTTTAACATCTTC+TGG | - | tig0027616:57745-57764 | None:intergenic | 35.0% | |
| AACTTCAAAACCTTTGTCGA+TGG | + | tig0027616:57764-57783 | Msa1435170:CDS | 35.0% | |
| TGCTGCTAAAGATATTCTTC+AGG | + | tig0027616:57873-57892 | Msa1435170:CDS | 35.0% | |
| ATGAAGAACAGATTTAGCCT+CGG | - | tig0027616:57914-57933 | None:intergenic | 35.0% | |
| ATCTGTTCTTCATACTGAGA+TGG | + | tig0027616:57921-57940 | Msa1435170:CDS | 35.0% | |
| TTATGTGTCTGTGTCATGTT+TGG | + | tig0027616:58169-58188 | Msa1435170:intron | 35.0% | |
| TCAACTATGAATCACGTACA+AGG | - | tig0027616:58198-58217 | None:intergenic | 35.0% | |
| TCTCACAATAAGTGCATGTT+TGG | + | tig0027616:58219-58238 | Msa1435170:intron | 35.0% | |
| ! | TAAGTGCATGTTTGGAATGA+CGG | + | tig0027616:58227-58246 | Msa1435170:intron | 35.0% |
| !! | TGTGATTTGTTGAAACTCCA+AGG | + | tig0027616:58282-58301 | Msa1435170:intron | 35.0% |
| ATTTGAACAAACCTCTACCT+TGG | - | tig0027616:58302-58321 | None:intergenic | 35.0% | |
| ! | GTAGAGGTTTGTTCAAATCA+TGG | + | tig0027616:58304-58323 | Msa1435170:intron | 35.0% |
| TCTTAGTGCGTGTTTGAATT+CGG | - | tig0027616:58360-58379 | None:intergenic | 35.0% | |
| ! | TTTGTGTTAGTTTACCCATG+TGG | - | tig0027616:58554-58573 | None:intergenic | 35.0% |
| CTAATTGCACTGAACAATAG+TGG | - | tig0027616:58732-58751 | None:intergenic | 35.0% | |
| ! | AGAAAAACCGATATTTTCCG+CGG | + | tig0027616:58750-58769 | Msa1435170:intron | 35.0% |
| !! | TGAAGGAAGTACTACCTCTT+CGG | - | tig0027616:57642-57661 | None:intergenic | 40.0% |
| AACTGAGAAGCTTCAAAACC+AGG | - | tig0027616:57793-57812 | None:intergenic | 40.0% | |
| TTTCAAAGCCGAAAAGCCTA+TGG | + | tig0027616:57816-57835 | Msa1435170:CDS | 40.0% | |
| TTCAAAGCCGAAAAGCCTAT+GGG | + | tig0027616:57817-57836 | Msa1435170:CDS | 40.0% | |
| ! | AGCAAAACCCATAGGCTTTT+CGG | - | tig0027616:57827-57846 | None:intergenic | 40.0% |
| TTGAAGAGAGCAAAACCCAT+AGG | - | tig0027616:57835-57854 | None:intergenic | 40.0% | |
| TTAGCAGCAATAGCTTGATG+AGG | - | tig0027616:57862-57881 | None:intergenic | 40.0% | |
| TGAAGAACAGATTTAGCCTC+GGG | - | tig0027616:57913-57932 | None:intergenic | 40.0% | |
| !! | ATCAGCAGAAGTGTCAATGT+CGG | - | tig0027616:58081-58100 | None:intergenic | 40.0% |
| TTGTTGAAACTCCAAGGTAG+AGG | + | tig0027616:58288-58307 | Msa1435170:intron | 40.0% | |
| GCTGGGGATTATAATCATAC+TGG | + | tig0027616:58479-58498 | Msa1435170:CDS | 40.0% | |
| TAGCCTGCATATGGATCATA+CGG | - | tig0027616:58888-58907 | None:intergenic | 40.0% | |
| !! | TGAAGGAAGTACTACCTCTT+CGG | - | tig0027616:57642-57661 | None:intergenic | 40.0% |
| AACTGAGAAGCTTCAAAACC+AGG | - | tig0027616:57793-57812 | None:intergenic | 40.0% | |
| TTTCAAAGCCGAAAAGCCTA+TGG | + | tig0027616:57816-57835 | Msa1435170:CDS | 40.0% | |
| TTCAAAGCCGAAAAGCCTAT+GGG | + | tig0027616:57817-57836 | Msa1435170:CDS | 40.0% | |
| ! | AGCAAAACCCATAGGCTTTT+CGG | - | tig0027616:57827-57846 | None:intergenic | 40.0% |
| TTGAAGAGAGCAAAACCCAT+AGG | - | tig0027616:57835-57854 | None:intergenic | 40.0% | |
| TTAGCAGCAATAGCTTGATG+AGG | - | tig0027616:57862-57881 | None:intergenic | 40.0% | |
| TGAAGAACAGATTTAGCCTC+GGG | - | tig0027616:57913-57932 | None:intergenic | 40.0% | |
| !! | ATCAGCAGAAGTGTCAATGT+CGG | - | tig0027616:58081-58100 | None:intergenic | 40.0% |
| TTGTTGAAACTCCAAGGTAG+AGG | + | tig0027616:58288-58307 | Msa1435170:intron | 40.0% | |
| GCTGGGGATTATAATCATAC+TGG | + | tig0027616:58479-58498 | Msa1435170:CDS | 40.0% | |
| TAGCCTGCATATGGATCATA+CGG | - | tig0027616:58888-58907 | None:intergenic | 40.0% | |
| GATTCATTCATGGCAGCCAA+CGG | + | tig0027616:57536-57555 | Msa1435170:exon | 45.0% | |
| GGAAGAAGGAGAAGGAATAG+CGG | - | tig0027616:57621-57640 | None:intergenic | 45.0% | |
| AGTACTACCTCTTCGGAAGA+AGG | - | tig0027616:57635-57654 | None:intergenic | 45.0% | |
| AACCTTTGTCGATGGTTACC+TGG | + | tig0027616:57772-57791 | Msa1435170:CDS | 45.0% | |
| AACCAGGTAACCATCGACAA+AGG | - | tig0027616:57777-57796 | None:intergenic | 45.0% | |
| !! | GGATATGCTTTTTGATCCCG+AGG | + | tig0027616:57894-57913 | Msa1435170:CDS | 45.0% |
| GACATTGACACTTCTGCTGA+TGG | + | tig0027616:58080-58099 | Msa1435170:intron | 45.0% | |
| AGTAAACGGTTACGAACAGC+TGG | + | tig0027616:58461-58480 | Msa1435170:CDS | 45.0% | |
| GTAAACGGTTACGAACAGCT+GGG | + | tig0027616:58462-58481 | Msa1435170:CDS | 45.0% | |
| TAAACGGTTACGAACAGCTG+GGG | + | tig0027616:58463-58482 | Msa1435170:CDS | 45.0% | |
| TTGCAGACCGCGGAAAATAT+CGG | - | tig0027616:58760-58779 | None:intergenic | 45.0% | |
| ATGTTGACAATTGCAGACCG+CGG | - | tig0027616:58770-58789 | None:intergenic | 45.0% | |
| GATTCATTCATGGCAGCCAA+CGG | + | tig0027616:57536-57555 | Msa1435170:exon | 45.0% | |
| GGAAGAAGGAGAAGGAATAG+CGG | - | tig0027616:57621-57640 | None:intergenic | 45.0% | |
| AGTACTACCTCTTCGGAAGA+AGG | - | tig0027616:57635-57654 | None:intergenic | 45.0% | |
| AACCTTTGTCGATGGTTACC+TGG | + | tig0027616:57772-57791 | Msa1435170:CDS | 45.0% | |
| AACCAGGTAACCATCGACAA+AGG | - | tig0027616:57777-57796 | None:intergenic | 45.0% | |
| !! | GGATATGCTTTTTGATCCCG+AGG | + | tig0027616:57894-57913 | Msa1435170:CDS | 45.0% |
| GACATTGACACTTCTGCTGA+TGG | + | tig0027616:58080-58099 | Msa1435170:intron | 45.0% | |
| AGTAAACGGTTACGAACAGC+TGG | + | tig0027616:58461-58480 | Msa1435170:CDS | 45.0% | |
| GTAAACGGTTACGAACAGCT+GGG | + | tig0027616:58462-58481 | Msa1435170:CDS | 45.0% | |
| TAAACGGTTACGAACAGCTG+GGG | + | tig0027616:58463-58482 | Msa1435170:CDS | 45.0% | |
| TTGCAGACCGCGGAAAATAT+CGG | - | tig0027616:58760-58779 | None:intergenic | 45.0% | |
| ATGTTGACAATTGCAGACCG+CGG | - | tig0027616:58770-58789 | None:intergenic | 45.0% | |
| GAAGGAGAAGGAATAGCGGT+GGG | - | tig0027616:57617-57636 | None:intergenic | 50.0% | |
| AGAAGGAGAAGGAATAGCGG+TGG | - | tig0027616:57618-57637 | None:intergenic | 50.0% | |
| TCCTTCTCCTTCTTCCGAAG+AGG | + | tig0027616:57625-57644 | Msa1435170:CDS | 50.0% | |
| ACCTCTTCGGAAGAAGGAGA+AGG | - | tig0027616:57629-57648 | None:intergenic | 50.0% | |
| TATGGATCATACGGAGGAGG+AGG | - | tig0027616:58879-58898 | None:intergenic | 50.0% | |
| GCATATGGATCATACGGAGG+AGG | - | tig0027616:58882-58901 | None:intergenic | 50.0% | |
| CCTGCATATGGATCATACGG+AGG | - | tig0027616:58885-58904 | None:intergenic | 50.0% | |
| CCTCCGTATGATCCATATGC+AGG | + | tig0027616:58882-58901 | Msa1435170:CDS | 50.0% | |
| GCAACAGGATAGCCTGCATA+TGG | - | tig0027616:58897-58916 | None:intergenic | 50.0% | |
| !! | GGCATTGGTACTTGTGCAAC+AGG | - | tig0027616:58912-58931 | None:intergenic | 50.0% |
| GAAGGAGAAGGAATAGCGGT+GGG | - | tig0027616:57617-57636 | None:intergenic | 50.0% | |
| AGAAGGAGAAGGAATAGCGG+TGG | - | tig0027616:57618-57637 | None:intergenic | 50.0% | |
| TCCTTCTCCTTCTTCCGAAG+AGG | + | tig0027616:57625-57644 | Msa1435170:CDS | 50.0% | |
| ACCTCTTCGGAAGAAGGAGA+AGG | - | tig0027616:57629-57648 | None:intergenic | 50.0% | |
| TATGGATCATACGGAGGAGG+AGG | - | tig0027616:58879-58898 | None:intergenic | 50.0% | |
| GCATATGGATCATACGGAGG+AGG | - | tig0027616:58882-58901 | None:intergenic | 50.0% | |
| CCTGCATATGGATCATACGG+AGG | - | tig0027616:58885-58904 | None:intergenic | 50.0% | |
| CCTCCGTATGATCCATATGC+AGG | + | tig0027616:58882-58901 | Msa1435170:CDS | 50.0% | |
| GCAACAGGATAGCCTGCATA+TGG | - | tig0027616:58897-58916 | None:intergenic | 50.0% | |
| !! | GGCATTGGTACTTGTGCAAC+AGG | - | tig0027616:58912-58931 | None:intergenic | 50.0% |
| TCCACCCTTACCACCAGCAA+TGG | + | tig0027616:57561-57580 | Msa1435170:CDS | 55.0% | |
| GAGGCCATTGCTGGTGGTAA+GGG | - | tig0027616:57568-57587 | None:intergenic | 55.0% | |
| !! | GAAGGAATAGCGGTGGGTTG+AGG | - | tig0027616:57611-57630 | None:intergenic | 55.0% |
| GGCGGAGGATGAAAAGGAGA+CGG | - | tig0027616:58515-58534 | None:intergenic | 55.0% | |
| CACCTGTTTGGGGACCACAT+GGG | + | tig0027616:58537-58556 | Msa1435170:CDS | 55.0% | |
| TACCCATGTGGTCCCCAAAC+AGG | - | tig0027616:58542-58561 | None:intergenic | 55.0% | |
| TCCACCCTTACCACCAGCAA+TGG | + | tig0027616:57561-57580 | Msa1435170:CDS | 55.0% | |
| GAGGCCATTGCTGGTGGTAA+GGG | - | tig0027616:57568-57587 | None:intergenic | 55.0% | |
| !! | GAAGGAATAGCGGTGGGTTG+AGG | - | tig0027616:57611-57630 | None:intergenic | 55.0% |
| GGCGGAGGATGAAAAGGAGA+CGG | - | tig0027616:58515-58534 | None:intergenic | 55.0% | |
| CACCTGTTTGGGGACCACAT+GGG | + | tig0027616:58537-58556 | Msa1435170:CDS | 55.0% | |
| TACCCATGTGGTCCCCAAAC+AGG | - | tig0027616:58542-58561 | None:intergenic | 55.0% | |
| GTGGTAAGGGTGGATGCCGT+TGG | - | tig0027616:57555-57574 | None:intergenic | 60.0% | |
| GCCATTGCTGGTGGTAAGGG+TGG | - | tig0027616:57565-57584 | None:intergenic | 60.0% | |
| GGAGGCCATTGCTGGTGGTA+AGG | - | tig0027616:57569-57588 | None:intergenic | 60.0% | |
| !! | ATAGCGGTGGGTTGAGGAGG+AGG | - | tig0027616:57605-57624 | None:intergenic | 60.0% |
| !! | GGAATAGCGGTGGGTTGAGG+AGG | - | tig0027616:57608-57627 | None:intergenic | 60.0% |
| !! | GGTGGTGGCGGAGGATGAAA+AGG | - | tig0027616:58521-58540 | None:intergenic | 60.0% |
| ATCCTCCGCCACCACCTGTT+TGG | + | tig0027616:58525-58544 | Msa1435170:CDS | 60.0% | |
| TCCTCCGCCACCACCTGTTT+GGG | + | tig0027616:58526-58545 | Msa1435170:CDS | 60.0% | |
| TGTGGTCCCCAAACAGGTGG+TGG | - | tig0027616:58536-58555 | None:intergenic | 60.0% | |
| CCATGTGGTCCCCAAACAGG+TGG | - | tig0027616:58539-58558 | None:intergenic | 60.0% | |
| CCACCTGTTTGGGGACCACA+TGG | + | tig0027616:58536-58555 | Msa1435170:CDS | 60.0% | |
| TCATACGGAGGAGGAGGTGG+TGG | - | tig0027616:58873-58892 | None:intergenic | 60.0% | |
| GGATCATACGGAGGAGGAGG+TGG | - | tig0027616:58876-58895 | None:intergenic | 60.0% | |
| GTGGTAAGGGTGGATGCCGT+TGG | - | tig0027616:57555-57574 | None:intergenic | 60.0% | |
| GCCATTGCTGGTGGTAAGGG+TGG | - | tig0027616:57565-57584 | None:intergenic | 60.0% | |
| GGAGGCCATTGCTGGTGGTA+AGG | - | tig0027616:57569-57588 | None:intergenic | 60.0% | |
| !! | ATAGCGGTGGGTTGAGGAGG+AGG | - | tig0027616:57605-57624 | None:intergenic | 60.0% |
| !! | GGAATAGCGGTGGGTTGAGG+AGG | - | tig0027616:57608-57627 | None:intergenic | 60.0% |
| !! | GGTGGTGGCGGAGGATGAAA+AGG | - | tig0027616:58521-58540 | None:intergenic | 60.0% |
| ATCCTCCGCCACCACCTGTT+TGG | + | tig0027616:58525-58544 | Msa1435170:CDS | 60.0% | |
| TCCTCCGCCACCACCTGTTT+GGG | + | tig0027616:58526-58545 | Msa1435170:CDS | 60.0% | |
| TGTGGTCCCCAAACAGGTGG+TGG | - | tig0027616:58536-58555 | None:intergenic | 60.0% | |
| CCATGTGGTCCCCAAACAGG+TGG | - | tig0027616:58539-58558 | None:intergenic | 60.0% | |
| CCACCTGTTTGGGGACCACA+TGG | + | tig0027616:58536-58555 | Msa1435170:CDS | 60.0% | |
| TCATACGGAGGAGGAGGTGG+TGG | - | tig0027616:58873-58892 | None:intergenic | 60.0% | |
| GGATCATACGGAGGAGGAGG+TGG | - | tig0027616:58876-58895 | None:intergenic | 60.0% | |
| TTGAGGAGGAGGAGGAGCGG+CGG | - | tig0027616:57594-57613 | None:intergenic | 65.0% | |
| GGGTTGAGGAGGAGGAGGAG+CGG | - | tig0027616:57597-57616 | None:intergenic | 65.0% | |
| CCTCCGCCACCACCTGTTTG+GGG | + | tig0027616:58527-58546 | Msa1435170:CDS | 65.0% | |
| ! | GGTCCCCAAACAGGTGGTGG+CGG | - | tig0027616:58533-58552 | None:intergenic | 65.0% |
| TTGAGGAGGAGGAGGAGCGG+CGG | - | tig0027616:57594-57613 | None:intergenic | 65.0% | |
| GGGTTGAGGAGGAGGAGGAG+CGG | - | tig0027616:57597-57616 | None:intergenic | 65.0% | |
| CCTCCGCCACCACCTGTTTG+GGG | + | tig0027616:58527-58546 | Msa1435170:CDS | 65.0% | |
| ! | GGTCCCCAAACAGGTGGTGG+CGG | - | tig0027616:58533-58552 | None:intergenic | 65.0% |
| !! | GCGGTGGGTTGAGGAGGAGG+AGG | - | tig0027616:57602-57621 | None:intergenic | 70.0% |
| !! | CCCCAAACAGGTGGTGGCGG+AGG | - | tig0027616:58530-58549 | None:intergenic | 70.0% |
| !! | GCGGTGGGTTGAGGAGGAGG+AGG | - | tig0027616:57602-57621 | None:intergenic | 70.0% |
| !! | CCCCAAACAGGTGGTGGCGG+AGG | - | tig0027616:58530-58549 | None:intergenic | 70.0% |
| CGGCGGGAGGCCATTGCTGG+TGG | - | tig0027616:57574-57593 | None:intergenic | 75.0% | |
| AGGAGGAGGAGGAGCGGCGG+CGG | - | tig0027616:57591-57610 | None:intergenic | 75.0% | |
| CGGCGGGAGGCCATTGCTGG+TGG | - | tig0027616:57574-57593 | None:intergenic | 75.0% | |
| AGGAGGAGGAGGAGCGGCGG+CGG | - | tig0027616:57591-57610 | None:intergenic | 75.0% | |
| ! | CGGCGGCGGGAGGCCATTGC+TGG | - | tig0027616:57577-57596 | None:intergenic | 80.0% |
| ! | GGAGGAGGAGGAGCGGCGGC+GGG | - | tig0027616:57590-57609 | None:intergenic | 80.0% |
| ! | CGGCGGCGGGAGGCCATTGC+TGG | - | tig0027616:57577-57596 | None:intergenic | 80.0% |
| ! | GGAGGAGGAGGAGCGGCGGC+GGG | - | tig0027616:57590-57609 | None:intergenic | 80.0% |
| ! | GGAGGAGGAGCGGCGGCGGG+AGG | - | tig0027616:57587-57606 | None:intergenic | 85.0% |
| ! | GGAGGAGGAGCGGCGGCGGG+AGG | - | tig0027616:57587-57606 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027616 | gene | 57378 | 58938 | 57378 | ID=Msa1435170;Name=Msa1435170 |
| tig0027616 | mRNA | 57378 | 58938 | 57378 | ID=Msa1435170-mRNA-1;Parent=Msa1435170;Name=Msa1435170-mRNA-1;_AED=0.03;_eAED=0.03;_QI=167|0.66|0.5|1|1|1|4|0|189 |
| tig0027616 | exon | 57378 | 57646 | 57378 | ID=Msa1435170-mRNA-1:exon:9520;Parent=Msa1435170-mRNA-1 |
| tig0027616 | exon | 57715 | 57970 | 57715 | ID=Msa1435170-mRNA-1:exon:9521;Parent=Msa1435170-mRNA-1 |
| tig0027616 | exon | 58429 | 58558 | 58429 | ID=Msa1435170-mRNA-1:exon:9522;Parent=Msa1435170-mRNA-1 |
| tig0027616 | exon | 58860 | 58938 | 58860 | ID=Msa1435170-mRNA-1:exon:9523;Parent=Msa1435170-mRNA-1 |
| tig0027616 | five_prime_UTR | 57378 | 57544 | 57378 | ID=Msa1435170-mRNA-1:five_prime_utr;Parent=Msa1435170-mRNA-1 |
| tig0027616 | CDS | 57545 | 57646 | 57545 | ID=Msa1435170-mRNA-1:cds;Parent=Msa1435170-mRNA-1 |
| tig0027616 | CDS | 57715 | 57970 | 57715 | ID=Msa1435170-mRNA-1:cds;Parent=Msa1435170-mRNA-1 |
| tig0027616 | CDS | 58429 | 58558 | 58429 | ID=Msa1435170-mRNA-1:cds;Parent=Msa1435170-mRNA-1 |
| tig0027616 | CDS | 58860 | 58938 | 58860 | ID=Msa1435170-mRNA-1:cds;Parent=Msa1435170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
