Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0013670 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013670 | Msa0062600 | 0.847397 | 1.186912e-59 | -8.615850e-47 |
| Msa0013670 | Msa0107120 | 0.852694 | 3.901293e-61 | -8.615850e-47 |
| Msa0013670 | Msa0107180 | 0.844839 | 5.894405e-59 | -8.615850e-47 |
| Msa0013670 | Msa0215680 | 0.845637 | 3.587634e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013670 | MtrunA17_Chr1g0163201 | 63.446 | 383 | 80 | 5 | 18 | 341 | 17 | 398 | 9.38e-152 | 432 |
| Msa0013670 | MtrunA17_Chr1g0163181 | 57.177 | 418 | 82 | 7 | 19 | 341 | 20 | 435 | 2.45e-150 | 430 |
| Msa0013670 | MtrunA17_Chr1g0163251 | 49.828 | 291 | 107 | 5 | 19 | 288 | 20 | 292 | 2.53e-85 | 263 |
| Msa0013670 | MtrunA17_Chr1g0163151 | 57.658 | 222 | 42 | 2 | 167 | 336 | 1 | 222 | 5.31e-78 | 238 |
| Msa0013670 | MtrunA17_Chr1g0163111 | 53.648 | 233 | 43 | 6 | 167 | 337 | 1 | 230 | 2.82e-70 | 219 |
| Msa0013670 | MtrunA17_Chr1g0163231 | 43.706 | 286 | 129 | 9 | 8 | 277 | 12 | 281 | 1.37e-66 | 211 |
| Msa0013670 | MtrunA17_Chr1g0163261 | 40.816 | 294 | 132 | 6 | 14 | 284 | 18 | 292 | 1.73e-65 | 209 |
| Msa0013670 | MtrunA17_Chr1g0171611 | 44.406 | 286 | 113 | 10 | 9 | 277 | 13 | 269 | 8.96e-65 | 206 |
| Msa0013670 | MtrunA17_Chr1g0163191 | 71.724 | 145 | 34 | 2 | 19 | 161 | 20 | 159 | 1.06e-54 | 176 |
| Msa0013670 | MtrunA17_Chr1g0163241 | 63.194 | 144 | 34 | 3 | 18 | 158 | 21 | 148 | 8.64e-51 | 166 |
| Msa0013670 | MtrunA17_Chr1g0162151 | 37.073 | 205 | 91 | 5 | 167 | 333 | 1 | 205 | 2.08e-33 | 123 |
| Msa0013670 | MtrunA17_Chr6g0476171 | 30.342 | 234 | 96 | 5 | 169 | 335 | 12 | 245 | 3.18e-26 | 104 |
| Msa0013670 | MtrunA17_Chr1g0163091 | 33.333 | 180 | 94 | 5 | 167 | 336 | 1 | 164 | 8.10e-26 | 101 |
| Msa0013670 | MtrunA17_Chr1g0163131 | 31.769 | 277 | 157 | 11 | 9 | 262 | 22 | 289 | 3.16e-25 | 103 |
| Msa0013670 | MtrunA17_Chr7g0233561 | 28.707 | 317 | 177 | 11 | 5 | 285 | 19 | 322 | 2.46e-24 | 101 |
| Msa0013670 | MtrunA17_Chr3g0131891 | 30.662 | 287 | 165 | 12 | 13 | 275 | 27 | 303 | 4.41e-24 | 100 |
| Msa0013670 | MtrunA17_Chr7g0233541 | 29.348 | 276 | 165 | 9 | 20 | 271 | 2 | 271 | 1.10e-22 | 96.3 |
| Msa0013670 | MtrunA17_Chr7g0233521 | 29.658 | 263 | 164 | 9 | 20 | 271 | 2 | 254 | 2.25e-22 | 95.1 |
| Msa0013670 | MtrunA17_Chr1g0208771 | 27.393 | 303 | 170 | 11 | 13 | 279 | 6 | 294 | 6.30e-22 | 96.3 |
| Msa0013670 | MtrunA17_Chr1g0163101 | 36.170 | 141 | 84 | 3 | 20 | 156 | 33 | 171 | 8.75e-22 | 90.9 |
| Msa0013670 | MtrunA17_Chr1g0162161 | 33.803 | 142 | 81 | 3 | 20 | 160 | 4 | 133 | 1.96e-21 | 89.4 |
| Msa0013670 | MtrunA17_Chr3g0103171 | 26.374 | 273 | 170 | 9 | 19 | 273 | 5 | 264 | 1.33e-20 | 89.7 |
| Msa0013670 | MtrunA17_Chr1g0163121 | 40.741 | 108 | 63 | 1 | 20 | 127 | 11 | 117 | 1.66e-20 | 86.7 |
| Msa0013670 | MtrunA17_Chr7g0233531 | 30.798 | 263 | 161 | 10 | 20 | 271 | 2 | 254 | 1.65e-19 | 87.0 |
| Msa0013670 | MtrunA17_Chr1g0163221 | 25.490 | 357 | 197 | 12 | 20 | 334 | 27 | 356 | 2.44e-19 | 87.8 |
| Msa0013670 | MtrunA17_Chr1g0163081 | 34.074 | 135 | 77 | 3 | 20 | 154 | 6 | 128 | 1.07e-18 | 81.6 |
| Msa0013670 | MtrunA17_Chr6g0476181 | 37.500 | 120 | 61 | 3 | 20 | 126 | 2 | 120 | 2.95e-18 | 80.9 |
| Msa0013670 | MtrunA17_Chr1g0163071 | 22.006 | 309 | 175 | 9 | 20 | 280 | 2 | 292 | 3.39e-18 | 84.0 |
| Msa0013670 | MtrunA17_Chr7g0233571 | 32.821 | 195 | 111 | 6 | 20 | 197 | 26 | 217 | 5.69e-18 | 81.6 |
| Msa0013670 | MtrunA17_Chr8g0390841 | 25.392 | 319 | 190 | 10 | 8 | 291 | 42 | 347 | 2.26e-17 | 82.8 |
| Msa0013670 | MtrunA17_Chr4g0067431 | 25.091 | 275 | 183 | 8 | 9 | 261 | 19 | 292 | 4.57e-17 | 80.9 |
| Msa0013670 | MtrunA17_Chr3g0103181 | 24.638 | 276 | 186 | 10 | 8 | 273 | 15 | 278 | 7.91e-17 | 79.3 |
| Msa0013670 | MtrunA17_Chr3g0103151 | 33.043 | 115 | 74 | 2 | 8 | 120 | 15 | 128 | 3.11e-15 | 72.4 |
| Msa0013670 | MtrunA17_Chr1g0163141 | 31.757 | 148 | 84 | 3 | 20 | 166 | 11 | 142 | 3.50e-15 | 72.8 |
| Msa0013670 | MtrunA17_Chr1g0163161 | 37.113 | 97 | 59 | 2 | 32 | 127 | 1 | 96 | 1.91e-14 | 69.3 |
| Msa0013670 | MtrunA17_Chr5g0419201 | 29.448 | 163 | 100 | 3 | 20 | 180 | 32 | 181 | 2.45e-14 | 70.9 |
| Msa0013670 | MtrunA17_Chr3g0103191 | 33.043 | 115 | 70 | 2 | 19 | 131 | 25 | 134 | 3.17e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 54 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGTAAAGCCTTTCAAATA+TGG | 0.242052 | 1_1:-21082005 | Msa0013670:CDS |
| TATTTCTCCACATATTTCTT+TGG | 0.248757 | 1_1:+21082140 | None:intergenic |
| CATTAACATCTTCAGATCTT+AGG | 0.260861 | 1_1:+21081292 | None:intergenic |
| AGAAATATGTGGAGAAATAT+TGG | 0.281812 | 1_1:-21082136 | Msa0013670:CDS |
| TGGAGAGTAATGGTGATATT+TGG | 0.287546 | 1_1:-21082049 | Msa0013670:CDS |
| TTAATGGAACTACAACAATA+AGG | 0.294713 | 1_1:-21081099 | Msa0013670:CDS |
| GTGTTTGATGTTTCAATTGT+AGG | 0.300485 | 1_1:-21079820 | Msa0013670:CDS |
| CTCTTAACTTTCAAATTCAT+TGG | 0.314459 | 1_1:-21081978 | Msa0013670:CDS |
| TTAGGAAACTTAAGGAATAT+AGG | 0.318222 | 1_1:+21082098 | None:intergenic |
| ATAGTAACATTGAATGAAAT+TGG | 0.319993 | 1_1:+21080929 | None:intergenic |
| AGAAAACCTAGTGATTTCTT+TGG | 0.323706 | 1_1:+21080881 | None:intergenic |
| CCTAGTGATTTCTTTGGCTT+TGG | 0.332979 | 1_1:+21080887 | None:intergenic |
| CTGGTCCTTTGAGTTTGCTT+TGG | 0.341746 | 1_1:+21081714 | None:intergenic |
| TAGGAAACTTAAGGAATATA+GGG | 0.346499 | 1_1:+21082099 | None:intergenic |
| TGTTCTCTTGAAAACTCATT+TGG | 0.346666 | 1_1:+21081133 | None:intergenic |
| TAATGGAACTACAACAATAA+GGG | 0.368234 | 1_1:-21081098 | Msa0013670:CDS |
| ACTTTCTTCACCTTCTTCAA+TGG | 0.380996 | 1_1:+21081776 | None:intergenic |
| CAACACCGTTAGGAAACTTA+AGG | 0.403140 | 1_1:+21082090 | None:intergenic |
| CCTTAAAGAAGCACAGCTAA+TGG | 0.407485 | 1_1:+21079790 | None:intergenic |
| GTGGTGGATGGAAAATATTC+AGG | 0.420444 | 1_1:-21081009 | Msa0013670:CDS |
| AAAGAATGCAAAGTGGAGAT+TGG | 0.431700 | 1_1:-21079883 | Msa0013670:CDS |
| CAAACTCAAAGGACCAGAAA+TGG | 0.451853 | 1_1:-21081708 | Msa0013670:CDS |
| TTAACTTTCAAATTCATTGG+TGG | 0.475675 | 1_1:-21081975 | Msa0013670:CDS |
| CAAAGTGGCCATGGTAAAGA+AGG | 0.488314 | 1_1:-21081325 | Msa0013670:CDS |
| TGACATTATAACTTCAAAAG+AGG | 0.495408 | 1_1:+21081263 | None:intergenic |
| TGTGGCTGTAAGTTCGGTAA+AGG | 0.504977 | 1_1:-21079922 | Msa0013670:intron |
| GCTGTAAGTTCGGTAAAGGT+TGG | 0.518813 | 1_1:-21079918 | Msa0013670:intron |
| AAGAGATATCCATATTTGAA+AGG | 0.520085 | 1_1:+21081996 | None:intergenic |
| TGGTTGGAAGTCGTTTGTGC+AGG | 0.521812 | 1_1:-21083550 | Msa0013670:CDS |
| AATGGCAAGAGAAAATTCTC+AGG | 0.523324 | 1_1:-21081690 | Msa0013670:intron |
| GACATTATAACTTCAAAAGA+GGG | 0.525934 | 1_1:+21081264 | None:intergenic |
| GAAGGAGCACAAGACATTCA+AGG | 0.537945 | 1_1:-21080262 | Msa0013670:intron |
| GATGAGGAAGCCATTGAAGA+AGG | 0.544836 | 1_1:-21081786 | Msa0013670:CDS |
| CCAAAGCCAAAGAAATCACT+AGG | 0.556666 | 1_1:-21080887 | Msa0013670:intron |
| GTAAATTTGAGATGATTCGA+CGG | 0.557247 | 1_1:-21080955 | Msa0013670:intron |
| CAATAAGGGTTGGTAATGAA+AGG | 0.558627 | 1_1:-21081084 | Msa0013670:CDS |
| TCCAGAAGGTCGTGATGTGA+AGG | 0.558641 | 1_1:-21080280 | Msa0013670:intron |
| AAGTGATGAATCAAGTGATG+AGG | 0.567308 | 1_1:-21081802 | Msa0013670:CDS |
| AGGTAGTAACAAAGTGGCCA+TGG | 0.577811 | 1_1:-21081334 | Msa0013670:CDS |
| ACTTACAAAGAAATAGCCAT+TGG | 0.583056 | 1_1:+21081230 | None:intergenic |
| AATATTGTATGGGTGGTGGA+TGG | 0.587908 | 1_1:-21081021 | Msa0013670:CDS |
| GGTGCTGAAGACACAGAAGA+AGG | 0.588176 | 1_1:-21081876 | Msa0013670:CDS |
| ATATTCCTTAAGTTTCCTAA+CGG | 0.590322 | 1_1:-21082095 | Msa0013670:CDS |
| GAGTAATGAGAGTTCAGATG+AGG | 0.591415 | 1_1:-21081745 | Msa0013670:CDS |
| GAGGGTTCCAAAGAAATATG+TGG | 0.594786 | 1_1:-21082147 | Msa0013670:CDS |
| GGAACTACAACAATAAGGGT+TGG | 0.596420 | 1_1:-21081094 | Msa0013670:CDS |
| ATGTCACAATCTTACGCCAA+TGG | 0.605717 | 1_1:-21081246 | Msa0013670:CDS |
| GGTTGGTAATGAAAGGAGTG+TGG | 0.605745 | 1_1:-21081077 | Msa0013670:CDS |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1_1:-21082131 | Msa0013670:CDS |
| CAGGAATATAACTTGCAAGC+TGG | 0.623587 | 1_1:-21083531 | Msa0013670:CDS |
| ATTCATGAAAGAATGCAAAG+TGG | 0.625279 | 1_1:-21079890 | Msa0013670:CDS |
| AAATACCAAAGCAAACTCAA+AGG | 0.654830 | 1_1:-21081719 | Msa0013670:CDS |
| GGAGTGTGGAAGTGAGTGTG+AGG | 0.659449 | 1_1:-21081063 | Msa0013670:CDS |
| CTTGGCAGGTAGTAACAAAG+TGG | 0.671173 | 1_1:-21081340 | Msa0013670:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAAAATGTGATTTTTTT+TGG | - | chr1_1:21081880-21081899 | Msa0013670:intron | 10.0% |
| !! | AACCAAATACTTATATATTA+TGG | + | chr1_1:21080096-21080115 | None:intergenic | 15.0% |
| !!! | ATTTAATCAATTTTGTTTGT+TGG | - | chr1_1:21080374-21080393 | Msa0013670:intron | 15.0% |
| !!! | ATTTTCTATCTAATTTTTTC+TGG | + | chr1_1:21080812-21080831 | None:intergenic | 15.0% |
| !!! | TAAAGATATTTTTTGTAGTA+TGG | + | chr1_1:21080889-21080908 | None:intergenic | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | - | chr1_1:21081290-21081309 | Msa0013670:CDS | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | - | chr1_1:21081328-21081347 | Msa0013670:CDS | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | - | chr1_1:21081329-21081348 | Msa0013670:CDS | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | - | chr1_1:21081414-21081433 | Msa0013670:intron | 15.0% |
| !!! | ATAGTTTATTTCTAAAGTAT+TGG | + | chr1_1:21081442-21081461 | None:intergenic | 15.0% |
| !!! | TTATTTTAAGAGTTATTGAA+TGG | - | chr1_1:21081779-21081798 | Msa0013670:CDS | 15.0% |
| !!! | TTCTTTCTTTCTTTTTTATT+TGG | - | chr1_1:21082500-21082519 | Msa0013670:intron | 15.0% |
| !!! | TTTAGATTTTATTATTGTAG+AGG | - | chr1_1:21082710-21082729 | Msa0013670:intron | 15.0% |
| !!! | TTAGATTTTATTATTGTAGA+GGG | - | chr1_1:21082711-21082730 | Msa0013670:intron | 15.0% |
| !! | AAACTTATGAATGATTTATA+AGG | - | chr1_1:21082803-21082822 | Msa0013670:intron | 15.0% |
| !! | TAAAAAATATTTCAATTCAC+AGG | + | chr1_1:21082879-21082898 | None:intergenic | 15.0% |
| !! | ATTTGAATAGATTTATAGTT+AGG | + | chr1_1:21082996-21083015 | None:intergenic | 15.0% |
| !!! | TCAAATGTATCTAAATTTTT+TGG | - | chr1_1:21083010-21083029 | Msa0013670:intron | 15.0% |
| !!! | CAAATGTATCTAAATTTTTT+GGG | - | chr1_1:21083011-21083030 | Msa0013670:intron | 15.0% |
| !! | TTTATGTAATTATATCTTAC+CGG | + | chr1_1:21083146-21083165 | None:intergenic | 15.0% |
| !!! | TCTTTCGTTATTATTGTTTT+TGG | - | chr1_1:21079957-21079976 | Msa0013670:intron | 20.0% |
| !! | CACCATAATATATAAGTATT+TGG | - | chr1_1:21080091-21080110 | Msa0013670:intron | 20.0% |
| !! | ATTATGCATGTATATATTAC+AGG | - | chr1_1:21080157-21080176 | Msa0013670:intron | 20.0% |
| !! | TTATGCATGTATATATTACA+GGG | - | chr1_1:21080158-21080177 | Msa0013670:intron | 20.0% |
| !!! | AATATATTCCAGATTTTCAT+AGG | - | chr1_1:21081017-21081036 | Msa0013670:CDS | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | - | chr1_1:21081289-21081308 | Msa0013670:CDS | 20.0% |
| !!! | AAAATGTGATTTTTTTTGGT+AGG | - | chr1_1:21081884-21081903 | Msa0013670:intron | 20.0% |
| !! | ATAGTAACATTGAATGAAAT+TGG | + | chr1_1:21082436-21082455 | None:intergenic | 20.0% |
| !! | TTATGTAATTATATCTTACC+GGG | + | chr1_1:21083145-21083164 | None:intergenic | 20.0% |
| !! | TACAAACAAAAATATTAGTG+AGG | + | chr1_1:21083317-21083336 | None:intergenic | 20.0% |
| !! | TATGAATCATGAAAATATCT+TGG | - | chr1_1:21083361-21083380 | Msa0013670:intron | 20.0% |
| ! | ATAGTAATTGTGAATGAAAG+TGG | + | chr1_1:21079891-21079910 | None:intergenic | 25.0% |
| ! | TCAATCATATATGTTCATCA+TGG | - | chr1_1:21080062-21080081 | Msa0013670:intron | 25.0% |
| !!! | GGTTTTAGTCATTCTAATAT+TGG | - | chr1_1:21080112-21080131 | Msa0013670:intron | 25.0% |
| !!! | AGTTTTTTTCCAAGTACTAA+AGG | - | chr1_1:21080265-21080284 | Msa0013670:CDS | 25.0% |
| ! | TATATATCACCTTTAGTACT+TGG | + | chr1_1:21080277-21080296 | None:intergenic | 25.0% |
| !! | ACTTTATGATGACATAGTTT+TGG | + | chr1_1:21080424-21080443 | None:intergenic | 25.0% |
| !!! | TTTTTACATAAGGTACTGTA+GGG | + | chr1_1:21080632-21080651 | None:intergenic | 25.0% |
| !!! | ATTTTTACATAAGGTACTGT+AGG | + | chr1_1:21080633-21080652 | None:intergenic | 25.0% |
| ! | TACAGTACCTTATGTAAAAA+TGG | - | chr1_1:21080632-21080651 | Msa0013670:intron | 25.0% |
| !!! | ATATCTGCCATTTTTACATA+AGG | + | chr1_1:21080642-21080661 | None:intergenic | 25.0% |
| ! | TGTAAAAATGGCAGATATTA+AGG | - | chr1_1:21080644-21080663 | Msa0013670:intron | 25.0% |
| ! | GTAAAAATGGCAGATATTAA+GGG | - | chr1_1:21080645-21080664 | Msa0013670:intron | 25.0% |
| !!! | CTTTTTTATCGTGTCATAAA+TGG | - | chr1_1:21080756-21080775 | Msa0013670:intron | 25.0% |
| ! | TATTTCTCCACATATTTCTT+TGG | + | chr1_1:21081225-21081244 | None:intergenic | 25.0% |
| ! | AGAAATATGTGGAGAAATAT+TGG | - | chr1_1:21081226-21081245 | Msa0013670:intron | 25.0% |
| ! | TAGGAAACTTAAGGAATATA+GGG | + | chr1_1:21081266-21081285 | None:intergenic | 25.0% |
| ! | TTAGGAAACTTAAGGAATAT+AGG | + | chr1_1:21081267-21081286 | None:intergenic | 25.0% |
| ! | ATATTCCTTAAGTTTCCTAA+CGG | - | chr1_1:21081267-21081286 | Msa0013670:CDS | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | - | chr1_1:21081293-21081312 | Msa0013670:CDS | 25.0% |
| ! | TTTGTAAAGCCTTTCAAATA+TGG | - | chr1_1:21081357-21081376 | Msa0013670:intron | 25.0% |
| ! | AAGAGATATCCATATTTGAA+AGG | + | chr1_1:21081369-21081388 | None:intergenic | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | - | chr1_1:21081384-21081403 | Msa0013670:intron | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | - | chr1_1:21081387-21081406 | Msa0013670:intron | 25.0% |
| !!! | TTCATCAACTGATTTGATAT+TGG | + | chr1_1:21081466-21081485 | None:intergenic | 25.0% |
| !!! | AATATCAAATCAGTTGATGA+AGG | - | chr1_1:21081465-21081484 | Msa0013670:intron | 25.0% |
| ! | AAATAGTTAATGCCTAAACT+TGG | - | chr1_1:21082004-21082023 | Msa0013670:CDS | 25.0% |
| ! | GACATTATAACTTCAAAAGA+GGG | + | chr1_1:21082101-21082120 | None:intergenic | 25.0% |
| ! | TGACATTATAACTTCAAAAG+AGG | + | chr1_1:21082102-21082121 | None:intergenic | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+TGG | - | chr1_1:21082247-21082266 | Msa0013670:intron | 25.0% |
| ! | TTAATGGAACTACAACAATA+AGG | - | chr1_1:21082263-21082282 | Msa0013670:intron | 25.0% |
| ! | TAATGGAACTACAACAATAA+GGG | - | chr1_1:21082264-21082283 | Msa0013670:intron | 25.0% |
| ! | TACCCAGAAAAAATATTGTA+TGG | - | chr1_1:21082330-21082349 | Msa0013670:intron | 25.0% |
| ! | ACCCAGAAAAAATATTGTAT+GGG | - | chr1_1:21082331-21082350 | Msa0013670:intron | 25.0% |
| !!! | ACCCATACAATATTTTTTCT+GGG | + | chr1_1:21082335-21082354 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTTATCCATGACA+AGG | - | chr1_1:21082576-21082595 | Msa0013670:intron | 25.0% |
| ! | CATGACAAGGTTATAAAAAA+GGG | - | chr1_1:21082589-21082608 | Msa0013670:intron | 25.0% |
| ! | ATGACAAGGTTATAAAAAAG+GGG | - | chr1_1:21082590-21082609 | Msa0013670:intron | 25.0% |
| ! | TGAATGATTTATAAGGTTCT+TGG | - | chr1_1:21082810-21082829 | Msa0013670:intron | 25.0% |
| ! | TAAAAGAAGAAACTGAAAAC+TGG | + | chr1_1:21082965-21082984 | None:intergenic | 25.0% |
| ! | TATGTAATTATATCTTACCG+GGG | + | chr1_1:21083144-21083163 | None:intergenic | 25.0% |
| ! | ATTGAACGAAAGTTAGTTAT+GGG | + | chr1_1:21083199-21083218 | None:intergenic | 25.0% |
| ! | AATTGAACGAAAGTTAGTTA+TGG | + | chr1_1:21083200-21083219 | None:intergenic | 25.0% |
| ! | GAGGTTAAAGTTAATAGAAT+GGG | + | chr1_1:21083258-21083277 | None:intergenic | 25.0% |
| ! | AGAGGTTAAAGTTAATAGAA+TGG | + | chr1_1:21083259-21083278 | None:intergenic | 25.0% |
| ! | ACTTTAACCTCTAATGTATA+AGG | - | chr1_1:21083267-21083286 | Msa0013670:intron | 25.0% |
| ! | AAATATCTTGGAGTTGAAAA+TGG | - | chr1_1:21083373-21083392 | Msa0013670:intron | 25.0% |
| ! | AATATCTTGGAGTTGAAAAT+GGG | - | chr1_1:21083374-21083393 | Msa0013670:intron | 25.0% |
| ! | AAATATTATGAGAGTCTTTG+TGG | - | chr1_1:21083422-21083441 | Msa0013670:intron | 25.0% |
| !!! | TTTGGCTCAAATCACTTTTT+AGG | + | chr1_1:21080406-21080425 | None:intergenic | 30.0% |
| GAATGAAACATTCAATGACT+CGG | - | chr1_1:21080481-21080500 | Msa0013670:intron | 30.0% | |
| !!! | CTTTTAATTTGCCACAAAAG+TGG | + | chr1_1:21080565-21080584 | None:intergenic | 30.0% |
| GCATACATCAAAAAACACAA+TGG | + | chr1_1:21080677-21080696 | None:intergenic | 30.0% | |
| !!! | TTTTTCTGGTGTTACTACTT+TGG | + | chr1_1:21080798-21080817 | None:intergenic | 30.0% |
| AAGATGATCCTATGAAAATC+TGG | + | chr1_1:21081028-21081047 | None:intergenic | 30.0% | |
| TTTGAATTTCTTTGTTGCAG+AGG | - | chr1_1:21081196-21081215 | Msa0013670:intron | 30.0% | |
| TTGAATTTCTTTGTTGCAGA+GGG | - | chr1_1:21081197-21081216 | Msa0013670:intron | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | - | chr1_1:21081231-21081250 | Msa0013670:intron | 30.0% | |
| !!! | ATTTTTTGTTCAACACCGTT+AGG | + | chr1_1:21081285-21081304 | None:intergenic | 30.0% |
| !! | CATTGGTGGATCATATTTTA+AGG | - | chr1_1:21081401-21081420 | Msa0013670:intron | 30.0% |
| AAATACCAAAGCAAACTCAA+AGG | - | chr1_1:21081643-21081662 | Msa0013670:intron | 30.0% | |
| !!! | AGGTGAGTTTGATCTTTTTT+GGG | - | chr1_1:21081692-21081711 | Msa0013670:CDS | 30.0% |
| !!! | GATCTTTTTTGGGTAGATTT+AGG | - | chr1_1:21081702-21081721 | Msa0013670:CDS | 30.0% |
| ! | AGAGTTATTGAATGGTTTGT+TGG | - | chr1_1:21081787-21081806 | Msa0013670:CDS | 30.0% |
| ! | GTTGGAATTTTATGTCTGAA+AGG | - | chr1_1:21081805-21081824 | Msa0013670:CDS | 30.0% |
| CATTAACATCTTCAGATCTT+AGG | + | chr1_1:21082073-21082092 | None:intergenic | 30.0% | |
| ACTTACAAAGAAATAGCCAT+TGG | + | chr1_1:21082135-21082154 | None:intergenic | 30.0% | |
| TAAACCATTACTTGAAACAG+TGG | - | chr1_1:21082203-21082222 | Msa0013670:intron | 30.0% | |
| TGTTCTCTTGAAAACTCATT+TGG | + | chr1_1:21082232-21082251 | None:intergenic | 30.0% | |
| !!! | CACCCATACAATATTTTTTC+TGG | + | chr1_1:21082336-21082355 | None:intergenic | 30.0% |
| CAGAAAAAATATTGTATGGG+TGG | - | chr1_1:21082334-21082353 | Msa0013670:intron | 30.0% | |
| AAAAAATATTGTATGGGTGG+TGG | - | chr1_1:21082337-21082356 | Msa0013670:intron | 30.0% | |
| ! | GTAAATTTGAGATGATTCGA+CGG | - | chr1_1:21082407-21082426 | Msa0013670:intron | 30.0% |
| AGAAAACCTAGTGATTTCTT+TGG | + | chr1_1:21082484-21082503 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTATAACCTTGTCA+TGG | + | chr1_1:21082591-21082610 | None:intergenic | 30.0% |
| CCATGACAAGGTTATAAAAA+AGG | - | chr1_1:21082588-21082607 | Msa0013670:intron | 30.0% | |
| ! | AATGGGATTAACTTGACTAA+CGG | + | chr1_1:21083241-21083260 | None:intergenic | 30.0% |
| TTAACCTCTAATGTATAAGG+TGG | - | chr1_1:21083270-21083289 | Msa0013670:intron | 30.0% | |
| TCATGATTCATAAACTCCTT+TGG | + | chr1_1:21083353-21083372 | None:intergenic | 30.0% | |
| ATATCTTGGAGTTGAAAATG+GGG | - | chr1_1:21083375-21083394 | Msa0013670:intron | 30.0% | |
| ATTCATGAAAGAATGCAAAG+TGG | - | chr1_1:21083472-21083491 | Msa0013670:intron | 30.0% | |
| GTGTTTGATGTTTCAATTGT+AGG | - | chr1_1:21083542-21083561 | Msa0013670:CDS | 30.0% | |
| TACTATTATCCCAGCTACAA+AGG | - | chr1_1:21079905-21079924 | Msa0013670:CDS | 35.0% | |
| GTGATGATACACACACAAAT+AGG | - | chr1_1:21080528-21080547 | Msa0013670:intron | 35.0% | |
| !! | ACAAAGCAAATCCACTTTTG+TGG | - | chr1_1:21080551-21080570 | Msa0013670:intron | 35.0% |
| ACTTTATTACTGTCCAGTAC+AGG | + | chr1_1:21080854-21080873 | None:intergenic | 35.0% | |
| ACTGGACAGTAATAAAGTCT+TGG | - | chr1_1:21080856-21080875 | Msa0013670:intron | 35.0% | |
| !! | GGTGAAAGATTTTGAGTGTT+AGG | + | chr1_1:21080945-21080964 | None:intergenic | 35.0% |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | - | chr1_1:21081303-21081322 | Msa0013670:CDS | 35.0% |
| TGGAGAGTAATGGTGATATT+TGG | - | chr1_1:21081313-21081332 | Msa0013670:CDS | 35.0% | |
| AAGTGATGAATCAAGTGATG+AGG | - | chr1_1:21081560-21081579 | Msa0013670:intron | 35.0% | |
| ACTTTCTTCACCTTCTTCAA+TGG | + | chr1_1:21081589-21081608 | None:intergenic | 35.0% | |
| !! | GAATTTTCTCTTGCCATTTC+TGG | + | chr1_1:21081670-21081689 | None:intergenic | 35.0% |
| AATGGCAAGAGAAAATTCTC+AGG | - | chr1_1:21081672-21081691 | Msa0013670:intron | 35.0% | |
| !!! | CAGGTGAGTTTGATCTTTTT+TGG | - | chr1_1:21081691-21081710 | Msa0013670:CDS | 35.0% |
| !! | TTTTCTAGCCTTCTTTACCA+TGG | + | chr1_1:21082048-21082067 | None:intergenic | 35.0% |
| ! | GTATCCACTGTTTCAAGTAA+TGG | + | chr1_1:21082210-21082229 | None:intergenic | 35.0% |
| !! | CAATAAGGGTTGGTAATGAA+AGG | - | chr1_1:21082278-21082297 | Msa0013670:intron | 35.0% |
| TATAAAAAAGGGGTCTCTTG+TGG | - | chr1_1:21082600-21082619 | Msa0013670:intron | 35.0% | |
| GTTGTAAAGAAGCAAGACAT+TGG | - | chr1_1:21082630-21082649 | Msa0013670:intron | 35.0% | |
| !! | CAATACCCTTTACTTTTGGA+TGG | + | chr1_1:21082671-21082690 | None:intergenic | 35.0% |
| ! | AGAGCAATACCCTTTACTTT+TGG | + | chr1_1:21082675-21082694 | None:intergenic | 35.0% |
| TGAAAATGGGGAGAAAATCA+TGG | - | chr1_1:21083387-21083406 | Msa0013670:intron | 35.0% | |
| AAAGAATGCAAAGTGGAGAT+TGG | - | chr1_1:21083479-21083498 | Msa0013670:intron | 35.0% | |
| ! | CAGGAATATAACTTGCAAGC+TGG | - | chr1_1:21079831-21079850 | Msa0013670:CDS | 40.0% |
| AAATACCTTGAAACTGCTCC+AGG | + | chr1_1:21079938-21079957 | None:intergenic | 40.0% | |
| !! | CAAGCACTGAAACAGAACAA+TGG | - | chr1_1:21080207-21080226 | Msa0013670:intron | 40.0% |
| CATTGTGAGCTCATGTGAAA+TGG | - | chr1_1:21080605-21080624 | Msa0013670:intron | 40.0% | |
| !! | TGGTGTTACTACTTTGGTGT+TGG | + | chr1_1:21080792-21080811 | None:intergenic | 40.0% |
| TTTCTCTACATGACCTGTAC+TGG | - | chr1_1:21080838-21080857 | Msa0013670:intron | 40.0% | |
| !! | AGTGAGTGAGTATTGAGCTA+AGG | + | chr1_1:21080981-21081000 | None:intergenic | 40.0% |
| GAGGGTTCCAAAGAAATATG+TGG | - | chr1_1:21081215-21081234 | Msa0013670:intron | 40.0% | |
| CAACACCGTTAGGAAACTTA+AGG | + | chr1_1:21081275-21081294 | None:intergenic | 40.0% | |
| GAGTAATGAGAGTTCAGATG+AGG | - | chr1_1:21081617-21081636 | Msa0013670:intron | 40.0% | |
| CAAACTCAAAGGACCAGAAA+TGG | - | chr1_1:21081654-21081673 | Msa0013670:intron | 40.0% | |
| AGTTAATGCCTAAACTTGGC+AGG | - | chr1_1:21082008-21082027 | Msa0013670:CDS | 40.0% | |
| TGTTACTACCTGCCAAGTTT+AGG | + | chr1_1:21082019-21082038 | None:intergenic | 40.0% | |
| ATGTCACAATCTTACGCCAA+TGG | - | chr1_1:21082116-21082135 | Msa0013670:CDS | 40.0% | |
| GGAACTACAACAATAAGGGT+TGG | - | chr1_1:21082268-21082287 | Msa0013670:intron | 40.0% | |
| !! | AATATTGTATGGGTGGTGGA+TGG | - | chr1_1:21082341-21082360 | Msa0013670:intron | 40.0% |
| !! | GTGGTGGATGGAAAATATTC+AGG | - | chr1_1:21082353-21082372 | Msa0013670:intron | 40.0% |
| !!! | CTTTGGCTTTGGTTCGTTTT+TGG | + | chr1_1:21082467-21082486 | None:intergenic | 40.0% |
| ! | CCTAGTGATTTCTTTGGCTT+TGG | + | chr1_1:21082478-21082497 | None:intergenic | 40.0% |
| CCAAAGCCAAAGAAATCACT+AGG | - | chr1_1:21082475-21082494 | Msa0013670:intron | 40.0% | |
| GTAAAGAAGCAAGACATTGG+AGG | - | chr1_1:21082633-21082652 | Msa0013670:intron | 40.0% | |
| AAGACATTGGAGGAACATCT+AGG | - | chr1_1:21082643-21082662 | Msa0013670:intron | 40.0% | |
| TAGGAGCCATCCAAAAGTAA+AGG | - | chr1_1:21082662-21082681 | Msa0013670:intron | 40.0% | |
| AGGAGCCATCCAAAAGTAAA+GGG | - | chr1_1:21082663-21082682 | Msa0013670:intron | 40.0% | |
| TGTGTTTATGCATGTCCAGA+AGG | - | chr1_1:21083068-21083087 | Msa0013670:intron | 40.0% | |
| TTTCGTGAAGAACAAAACCC+CGG | - | chr1_1:21083124-21083143 | Msa0013670:intron | 40.0% | |
| GTGTCCACCTTATACATTAG+AGG | + | chr1_1:21083277-21083296 | None:intergenic | 40.0% | |
| AGTCTTTGTGGCTGTAAGTT+CGG | - | chr1_1:21083434-21083453 | Msa0013670:intron | 40.0% | |
| AGCTAAGGCTTAGAGAAGTG+AGG | + | chr1_1:21080966-21080985 | None:intergenic | 45.0% | |
| GATGAGGAAGCCATTGAAGA+AGG | - | chr1_1:21081576-21081595 | Msa0013670:intron | 45.0% | |
| ! | CTGGTCCTTTGAGTTTGCTT+TGG | + | chr1_1:21081651-21081670 | None:intergenic | 45.0% |
| CTTGGCAGGTAGTAACAAAG+TGG | - | chr1_1:21082022-21082041 | Msa0013670:CDS | 45.0% | |
| AGGTAGTAACAAAGTGGCCA+TGG | - | chr1_1:21082028-21082047 | Msa0013670:CDS | 45.0% | |
| CAAAGTGGCCATGGTAAAGA+AGG | - | chr1_1:21082037-21082056 | Msa0013670:CDS | 45.0% | |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | - | chr1_1:21082285-21082304 | Msa0013670:intron | 45.0% |
| ! | GAAGGAGCACAAGACATTCA+AGG | - | chr1_1:21083100-21083119 | Msa0013670:intron | 45.0% |
| GTATCTGCAGTGTGTACCAA+AGG | - | chr1_1:21083334-21083353 | Msa0013670:intron | 45.0% | |
| TGTGGCTGTAAGTTCGGTAA+AGG | - | chr1_1:21083440-21083459 | Msa0013670:intron | 45.0% | |
| GCTGTAAGTTCGGTAAAGGT+TGG | - | chr1_1:21083444-21083463 | Msa0013670:intron | 45.0% | |
| !! | AAAAATAATAAATACTTAAT+TGG | - | chr1_1:21081935-21081954 | Msa0013670:intron | 5.0% |
| !! | TATATATATATTTCTTAATT+TGG | - | chr1_1:21082775-21082794 | Msa0013670:intron | 5.0% |
| TGGTTGGAAGTCGTTTGTGC+AGG | - | chr1_1:21079812-21079831 | Msa0013670:CDS | 50.0% | |
| GGCATGGTTCCTTTGTAGCT+GGG | + | chr1_1:21079917-21079936 | None:intergenic | 50.0% | |
| AGGCATGGTTCCTTTGTAGC+TGG | + | chr1_1:21079918-21079937 | None:intergenic | 50.0% | |
| AGCTACAAAGGAACCATGCC+TGG | - | chr1_1:21079917-21079936 | Msa0013670:intron | 50.0% | |
| ! | GGTGCTGAAGACACAGAAGA+AGG | - | chr1_1:21081486-21081505 | Msa0013670:intron | 50.0% |
| TCCAGAAGGTCGTGATGTGA+AGG | - | chr1_1:21083082-21083101 | Msa0013670:intron | 50.0% | |
| TCCTTCACATCACGACCTTC+TGG | + | chr1_1:21083086-21083105 | None:intergenic | 50.0% | |
| CCTTGAAACTGCTCCAGGCA+TGG | + | chr1_1:21079933-21079952 | None:intergenic | 55.0% | |
| CCATGCCTGGAGCAGTTTCA+AGG | - | chr1_1:21079930-21079949 | Msa0013670:intron | 55.0% | |
| GGAGTGTGGAAGTGAGTGTG+AGG | - | chr1_1:21082299-21082318 | Msa0013670:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 21079804 | 21083580 | 21079804 | ID=Msa0013670;Name=Msa0013670 |
| chr1_1 | mRNA | 21079804 | 21083580 | 21079804 | ID=Msa0013670-mRNA-1;Parent=Msa0013670;Name=Msa0013670-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|1|0.28|0.12|8|0|341 |
| chr1_1 | exon | 21083527 | 21083580 | 21083527 | ID=Msa0013670-mRNA-1:exon:7489;Parent=Msa0013670-mRNA-1 |
| chr1_1 | exon | 21081949 | 21082168 | 21081949 | ID=Msa0013670-mRNA-1:exon:7488;Parent=Msa0013670-mRNA-1 |
| chr1_1 | exon | 21081691 | 21081897 | 21081691 | ID=Msa0013670-mRNA-1:exon:7487;Parent=Msa0013670-mRNA-1 |
| chr1_1 | exon | 21081236 | 21081354 | 21081236 | ID=Msa0013670-mRNA-1:exon:7486;Parent=Msa0013670-mRNA-1 |
| chr1_1 | exon | 21080982 | 21081161 | 21080982 | ID=Msa0013670-mRNA-1:exon:7485;Parent=Msa0013670-mRNA-1 |
| chr1_1 | exon | 21080888 | 21080966 | 21080888 | ID=Msa0013670-mRNA-1:exon:7484;Parent=Msa0013670-mRNA-1 |
| chr1_1 | exon | 21080263 | 21080297 | 21080263 | ID=Msa0013670-mRNA-1:exon:7483;Parent=Msa0013670-mRNA-1 |
| chr1_1 | exon | 21079804 | 21079932 | 21079804 | ID=Msa0013670-mRNA-1:exon:7482;Parent=Msa0013670-mRNA-1 |
| chr1_1 | CDS | 21083527 | 21083580 | 21083527 | ID=Msa0013670-mRNA-1:cds;Parent=Msa0013670-mRNA-1 |
| chr1_1 | CDS | 21081949 | 21082168 | 21081949 | ID=Msa0013670-mRNA-1:cds;Parent=Msa0013670-mRNA-1 |
| chr1_1 | CDS | 21081691 | 21081897 | 21081691 | ID=Msa0013670-mRNA-1:cds;Parent=Msa0013670-mRNA-1 |
| chr1_1 | CDS | 21081236 | 21081354 | 21081236 | ID=Msa0013670-mRNA-1:cds;Parent=Msa0013670-mRNA-1 |
| chr1_1 | CDS | 21080982 | 21081161 | 21080982 | ID=Msa0013670-mRNA-1:cds;Parent=Msa0013670-mRNA-1 |
| chr1_1 | CDS | 21080888 | 21080966 | 21080888 | ID=Msa0013670-mRNA-1:cds;Parent=Msa0013670-mRNA-1 |
| chr1_1 | CDS | 21080263 | 21080297 | 21080263 | ID=Msa0013670-mRNA-1:cds;Parent=Msa0013670-mRNA-1 |
| chr1_1 | CDS | 21079804 | 21079932 | 21079804 | ID=Msa0013670-mRNA-1:cds;Parent=Msa0013670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
