Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107180 | XP_039688434.1 | 73.068 | 453 | 90 | 5 | 45 | 482 | 3 | 438 | 0.0 | 656 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107180 | sp|Q8L3W1|VRN1_ARATH | 26.347 | 334 | 199 | 11 | 51 | 340 | 6 | 336 | 1.21e-20 | 96.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107180 | A0A396JPN4 | 73.068 | 453 | 90 | 5 | 45 | 482 | 3 | 438 | 0.0 | 656 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0107180 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013670 | Msa0107180 | 0.844839 | 5.894405e-59 | -8.615850e-47 |
| Msa0017510 | Msa0107180 | 0.830159 | 3.435565e-55 | -8.615850e-47 |
| Msa0062600 | Msa0107180 | 0.946901 | 1.899013e-105 | -8.615850e-47 |
| Msa0067940 | Msa0107180 | 0.831420 | 1.686660e-55 | -8.615850e-47 |
| Msa0107020 | Msa0107180 | 0.946294 | 6.074803e-105 | -8.615850e-47 |
| Msa0107120 | Msa0107180 | 0.992845 | 8.412916e-196 | -8.615850e-47 |
| Msa0107180 | Msa0128020 | 0.816193 | 6.272445e-52 | -8.615850e-47 |
| Msa0107180 | Msa0139060 | 0.804770 | 1.842069e-49 | -8.615850e-47 |
| Msa0107180 | Msa0157290 | 0.829898 | 3.978978e-55 | -8.615850e-47 |
| Msa0107180 | Msa0165220 | 0.810476 | 1.131323e-50 | -8.615850e-47 |
| Msa0107180 | Msa0200260 | 0.803672 | 3.117410e-49 | -8.615850e-47 |
| Msa0107180 | Msa0215680 | 0.990221 | 1.283517e-181 | -8.615850e-47 |
| Msa0107180 | Msa0222890 | 0.817088 | 3.952183e-52 | -8.615850e-47 |
| Msa0107180 | Msa0243100 | 0.800233 | 1.586564e-48 | -8.615850e-47 |
| Msa0107180 | Msa0357340 | 0.813292 | 2.755733e-51 | -8.615850e-47 |
| Msa0107180 | Msa0487800 | 0.810633 | 1.046191e-50 | -8.615850e-47 |
| Msa0107180 | Msa0498650 | 0.802063 | 6.701150e-49 | -8.615850e-47 |
| Msa0107180 | Msa0502890 | 0.800419 | 1.453919e-48 | -8.615850e-47 |
| Msa0107180 | Msa0530940 | 0.802028 | 6.814250e-49 | -8.615850e-47 |
| Msa0107180 | Msa0597330 | 0.816642 | 4.977732e-52 | -8.615850e-47 |
| Msa0107180 | Msa0601750 | 0.802470 | 5.524414e-49 | -8.615850e-47 |
| Msa0107180 | Msa0602390 | 0.817422 | 3.324253e-52 | -8.615850e-47 |
| Msa0107180 | Msa0610430 | 0.818226 | 2.189060e-52 | -8.615850e-47 |
| Msa0107180 | Msa0621490 | 0.801290 | 9.652871e-49 | -8.615850e-47 |
| Msa0107180 | Msa0648880 | 0.804492 | 2.105164e-49 | -8.615850e-47 |
| Msa0107180 | Msa0657970 | 0.814890 | 1.223253e-51 | -8.615850e-47 |
| Msa0107180 | Msa0669320 | 0.806117 | 9.610850e-50 | -8.615850e-47 |
| Msa0107180 | Msa0681270 | 0.814879 | 1.230650e-51 | -8.615850e-47 |
| Msa0107180 | Msa0691380 | 0.815665 | 8.227222e-52 | -8.615850e-47 |
| Msa0107180 | Msa0692950 | 0.810677 | 1.023448e-50 | -8.615850e-47 |
| Msa0107180 | Msa0693010 | -0.804299 | 2.308856e-49 | -8.615850e-47 |
| Msa0107180 | Msa0743720 | 0.836676 | 8.139644e-57 | -8.615850e-47 |
| Msa0107180 | Msa0769920 | 0.806326 | 8.683631e-50 | -8.615850e-47 |
| Msa0107180 | Msa0790510 | 0.801948 | 7.076611e-49 | -8.615850e-47 |
| Msa0107180 | Msa0796700 | 0.817113 | 3.902351e-52 | -8.615850e-47 |
| Msa0107180 | Msa0822870 | 0.805023 | 1.630237e-49 | -8.615850e-47 |
| Msa0107180 | Msa0824680 | 0.805659 | 1.199527e-49 | -8.615850e-47 |
| Msa0107180 | Msa0844570 | 0.802983 | 4.330200e-49 | -8.615850e-47 |
| Msa0107180 | Msa0880140 | 0.825674 | 4.120878e-54 | -8.615850e-47 |
| Msa0107180 | Msa0947660 | 0.820525 | 6.551550e-53 | -8.615850e-47 |
| Msa0107180 | Msa0959360 | 0.815819 | 7.602108e-52 | -8.615850e-47 |
| Msa0107180 | Msa0968680 | 0.802990 | 4.314665e-49 | -8.615850e-47 |
| Msa0107180 | Msa0969520 | 0.802514 | 5.411930e-49 | -8.615850e-47 |
| Msa0107180 | Msa0976670 | 0.811849 | 5.699395e-51 | -8.615850e-47 |
| Msa0107180 | Msa0993290 | 0.827412 | 1.586712e-54 | -8.615850e-47 |
| Msa0107180 | Msa0993600 | 0.829920 | 3.929329e-55 | -8.615850e-47 |
| Msa0107180 | Msa1005880 | 0.804146 | 2.484515e-49 | -8.615850e-47 |
| Msa0107180 | Msa1014540 | 0.843711 | 1.184452e-58 | -8.615850e-47 |
| Msa0107180 | Msa1075540 | 0.806720 | 7.170786e-50 | -8.615850e-47 |
| Msa0107180 | Msa1082500 | 0.810125 | 1.346416e-50 | -8.615850e-47 |
| Msa0107180 | Msa1104090 | 0.809062 | 2.278271e-50 | -8.615850e-47 |
| Msa0107180 | Msa1124960 | 0.804002 | 2.662179e-49 | -8.615850e-47 |
| Msa0107180 | Msa1189430 | 0.805006 | 1.643787e-49 | -8.615850e-47 |
| Msa0107180 | Msa1204090 | 0.811604 | 6.441493e-51 | -8.615850e-47 |
| Msa0107180 | Msa1242670 | 0.809897 | 1.507378e-50 | -8.615850e-47 |
| Msa0107180 | Msa1244250 | 0.811222 | 7.798013e-51 | -8.615850e-47 |
| Msa0107180 | Msa1253020 | 0.814669 | 1.369382e-51 | -8.615850e-47 |
| Msa0107180 | Msa1269230 | 0.811913 | 5.519714e-51 | -8.615850e-47 |
| Msa0107180 | Msa1277660 | 0.815073 | 1.114526e-51 | -8.615850e-47 |
| Msa0107180 | Msa1283860 | 0.805036 | 1.620108e-49 | -8.615850e-47 |
| Msa0107180 | Msa1284680 | 0.800252 | 1.572638e-48 | -8.615850e-47 |
| Msa0107180 | Msa1287460 | 0.803162 | 3.975974e-49 | -8.615850e-47 |
| Msa0107180 | Msa1327680 | 0.807850 | 4.132050e-50 | -8.615850e-47 |
| Msa0107180 | Msa1336670 | 0.807034 | 6.154872e-50 | -8.615850e-47 |
| Msa0107180 | Msa1342840 | 0.806626 | 7.507551e-50 | -8.615850e-47 |
| Msa0107180 | Msa1359040 | 0.811621 | 6.388592e-51 | -8.615850e-47 |
| Msa0107180 | Msa1429150 | 0.807303 | 5.399310e-50 | -8.615850e-47 |
| Msa0107180 | Msa1466540 | 0.813799 | 2.131571e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107180 | MtrunA17_Chr1g0163181 | 73.068 | 453 | 90 | 5 | 45 | 482 | 3 | 438 | 0.0 | 656 |
| Msa0107180 | MtrunA17_Chr1g0163201 | 70.629 | 429 | 69 | 5 | 62 | 480 | 18 | 399 | 0.0 | 561 |
| Msa0107180 | MtrunA17_Chr1g0163251 | 51.831 | 355 | 120 | 4 | 50 | 387 | 8 | 328 | 4.41e-112 | 337 |
| Msa0107180 | MtrunA17_Chr1g0163251 | 58.824 | 51 | 21 | 0 | 1 | 51 | 243 | 293 | 2.11e-11 | 65.5 |
| Msa0107180 | MtrunA17_Chr1g0163151 | 66.135 | 251 | 53 | 2 | 227 | 474 | 1 | 222 | 4.53e-111 | 327 |
| Msa0107180 | MtrunA17_Chr1g0163151 | 32.593 | 135 | 74 | 4 | 3 | 124 | 79 | 209 | 5.36e-11 | 62.4 |
| Msa0107180 | MtrunA17_Chr1g0163111 | 65.476 | 252 | 62 | 5 | 227 | 475 | 1 | 230 | 2.38e-105 | 313 |
| Msa0107180 | MtrunA17_Chr1g0163231 | 44.872 | 312 | 125 | 8 | 45 | 342 | 3 | 281 | 4.87e-78 | 246 |
| Msa0107180 | MtrunA17_Chr1g0163261 | 43.564 | 303 | 134 | 4 | 56 | 349 | 18 | 292 | 7.95e-78 | 245 |
| Msa0107180 | MtrunA17_Chr1g0163191 | 73.596 | 178 | 27 | 2 | 44 | 221 | 2 | 159 | 1.34e-74 | 232 |
| Msa0107180 | MtrunA17_Chr1g0171611 | 44.409 | 313 | 113 | 8 | 45 | 342 | 3 | 269 | 1.44e-73 | 234 |
| Msa0107180 | MtrunA17_Chr1g0163241 | 59.091 | 176 | 36 | 3 | 44 | 218 | 8 | 148 | 2.24e-57 | 187 |
| Msa0107180 | MtrunA17_Chr6g0476171 | 34.191 | 272 | 132 | 6 | 220 | 473 | 3 | 245 | 4.61e-41 | 147 |
| Msa0107180 | MtrunA17_Chr6g0476171 | 45.600 | 125 | 50 | 5 | 1 | 111 | 98 | 218 | 3.42e-19 | 87.0 |
| Msa0107180 | MtrunA17_Chr1g0208771 | 27.155 | 464 | 266 | 15 | 62 | 472 | 12 | 456 | 3.69e-38 | 145 |
| Msa0107180 | MtrunA17_Chr1g0162151 | 35.458 | 251 | 110 | 6 | 227 | 471 | 1 | 205 | 2.16e-37 | 136 |
| Msa0107180 | MtrunA17_Chr1g0163131 | 32.990 | 291 | 177 | 9 | 56 | 339 | 27 | 306 | 1.21e-36 | 137 |
| Msa0107180 | MtrunA17_Chr1g0163131 | 37.500 | 160 | 83 | 6 | 331 | 475 | 151 | 308 | 2.12e-20 | 91.7 |
| Msa0107180 | MtrunA17_Chr8g0390841 | 25.553 | 497 | 288 | 17 | 45 | 472 | 33 | 516 | 1.27e-36 | 141 |
| Msa0107180 | MtrunA17_Chr7g0233561 | 31.988 | 322 | 180 | 11 | 51 | 350 | 18 | 322 | 2.65e-34 | 131 |
| Msa0107180 | MtrunA17_Chr3g0131891 | 31.419 | 296 | 172 | 9 | 56 | 340 | 28 | 303 | 5.09e-32 | 125 |
| Msa0107180 | MtrunA17_Chr1g0163091 | 42.424 | 132 | 71 | 1 | 227 | 353 | 1 | 132 | 7.25e-31 | 117 |
| Msa0107180 | MtrunA17_Chr7g0233541 | 31.959 | 291 | 173 | 9 | 63 | 340 | 2 | 280 | 1.41e-30 | 120 |
| Msa0107180 | MtrunA17_Chr7g0233521 | 32.056 | 287 | 161 | 10 | 63 | 340 | 2 | 263 | 3.36e-30 | 119 |
| Msa0107180 | MtrunA17_Chr1g0163101 | 48.246 | 114 | 56 | 2 | 56 | 169 | 26 | 136 | 2.70e-28 | 110 |
| Msa0107180 | MtrunA17_Chr7g0233531 | 32.867 | 286 | 160 | 10 | 63 | 340 | 2 | 263 | 7.40e-27 | 109 |
| Msa0107180 | MtrunA17_Chr3g0103171 | 27.586 | 290 | 167 | 10 | 62 | 338 | 5 | 264 | 3.30e-25 | 104 |
| Msa0107180 | MtrunA17_Chr1g0162161 | 42.727 | 110 | 60 | 2 | 63 | 172 | 4 | 110 | 7.32e-25 | 100 |
| Msa0107180 | MtrunA17_Chr1g0163071 | 23.780 | 328 | 182 | 8 | 63 | 352 | 2 | 299 | 8.30e-25 | 104 |
| Msa0107180 | MtrunA17_Chr1g0163121 | 45.536 | 112 | 58 | 2 | 61 | 172 | 9 | 117 | 1.15e-24 | 99.4 |
| Msa0107180 | MtrunA17_Chr3g0103181 | 25.256 | 293 | 188 | 8 | 51 | 338 | 12 | 278 | 6.09e-24 | 101 |
| Msa0107180 | MtrunA17_Chr4g0067431 | 27.362 | 307 | 193 | 9 | 51 | 338 | 15 | 310 | 2.43e-23 | 100 |
| Msa0107180 | MtrunA17_Chr6g0476181 | 41.600 | 125 | 66 | 3 | 63 | 186 | 2 | 120 | 4.08e-23 | 95.9 |
| Msa0107180 | MtrunA17_Chr1g0163081 | 40.909 | 110 | 62 | 2 | 63 | 172 | 6 | 112 | 2.13e-22 | 93.2 |
| Msa0107180 | MtrunA17_Chr1g0163221 | 28.477 | 302 | 181 | 9 | 48 | 338 | 12 | 289 | 1.45e-21 | 95.9 |
| Msa0107180 | MtrunA17_Chr7g0233571 | 31.163 | 215 | 133 | 6 | 51 | 257 | 10 | 217 | 7.24e-21 | 91.3 |
| Msa0107180 | MtrunA17_Chr3g0103151 | 37.815 | 119 | 68 | 3 | 51 | 165 | 12 | 128 | 1.07e-19 | 86.3 |
| Msa0107180 | MtrunA17_Chr1g0163141 | 42.000 | 100 | 57 | 1 | 59 | 158 | 7 | 105 | 2.17e-19 | 85.9 |
| Msa0107180 | MtrunA17_Chr3g0103191 | 31.548 | 168 | 105 | 5 | 51 | 210 | 12 | 177 | 9.85e-19 | 85.9 |
| Msa0107180 | MtrunA17_Chr5g0419201 | 34.074 | 135 | 82 | 2 | 56 | 183 | 25 | 159 | 5.71e-18 | 82.0 |
| Msa0107180 | MtrunA17_Chr1g0163161 | 42.105 | 95 | 52 | 2 | 75 | 169 | 1 | 92 | 1.06e-17 | 79.7 |
| Msa0107180 | MtrunA17_Chr6g0467351 | 35.000 | 120 | 70 | 3 | 55 | 166 | 23 | 142 | 5.71e-15 | 74.3 |
| Msa0107180 | MtrunA17_Chr1g0154041 | 23.975 | 317 | 190 | 10 | 59 | 328 | 27 | 339 | 1.84e-14 | 75.9 |
| Msa0107180 | MtrunA17_Chr3g0077411 | 20.760 | 342 | 223 | 8 | 4 | 338 | 215 | 515 | 1.42e-12 | 69.7 |
| Msa0107180 | MtrunA17_Chr3g0077461 | 25.907 | 193 | 133 | 4 | 1 | 187 | 187 | 375 | 1.88e-12 | 69.3 |
| Msa0107180 | MtrunA17_Chr4g0033961 | 36.364 | 99 | 57 | 2 | 51 | 143 | 6 | 104 | 2.68e-12 | 68.6 |
| Msa0107180 | MtrunA17_Chr1g0162441 | 33.945 | 109 | 65 | 3 | 51 | 152 | 7 | 115 | 1.32e-11 | 66.6 |
| Msa0107180 | MtrunA17_Chr5g0419211 | 32.632 | 95 | 63 | 1 | 261 | 354 | 10 | 104 | 8.17e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107180 | AT3G18990.2 | 26.113 | 337 | 202 | 11 | 51 | 343 | 6 | 339 | 8.97e-22 | 97.1 |
| Msa0107180 | AT3G18990.1 | 26.347 | 334 | 199 | 11 | 51 | 340 | 6 | 336 | 1.23e-21 | 96.3 |
Find 101 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTAGCTGTGCTTCTTTA+AGG | 0.068553 | 1_3:+17199642 | Msa0107180:CDS |
| TTTGCAAAGCCTTTCAAATA+TGG | 0.180110 | 1_3:+17197434 | Msa0107180:CDS |
| AAATATCTTGGAGTTGAAAA+TGG | 0.201158 | 1_3:+17199443 | Msa0107180:CDS |
| ATAAATATCCAGCACTTTAA+AGG | 0.218530 | 1_3:-17199692 | None:intergenic |
| TATTTCTCCACATATTTCTT+TGG | 0.248757 | 1_3:-17197299 | None:intergenic |
| ATGCTGACACAATACTTCTT+AGG | 0.258399 | 1_3:-17199770 | None:intergenic |
| CATTAACATCTTCAGATCTT+AGG | 0.260861 | 1_3:-17198142 | None:intergenic |
| TTCATCAACTGATTTGATAT+TGG | 0.261684 | 1_3:-17197540 | None:intergenic |
| AGAAATATGTGGAGAAATAT+TGG | 0.281812 | 1_3:+17197303 | Msa0107180:CDS |
| TGGAGAGTAATGGTGATATT+TGG | 0.287546 | 1_3:+17197390 | Msa0107180:CDS |
| TTAATGGAACTACAACAATA+AGG | 0.294713 | 1_3:+17198335 | Msa0107180:CDS |
| GTGTTTGATGTTTCAATTGT+AGG | 0.300485 | 1_3:+17199612 | Msa0107180:CDS |
| CTCTTAACTTTCAAATTCAT+TGG | 0.314459 | 1_3:+17197461 | Msa0107180:CDS |
| TTAGGAAACTTAAGGAATAT+AGG | 0.318222 | 1_3:-17197341 | None:intergenic |
| ATAGTAACATTGAATGAAAT+TGG | 0.319993 | 1_3:-17198505 | None:intergenic |
| AGGCATGGTTCCTTTGTAGC+TGG | 0.320210 | 1_3:-17196021 | None:intergenic |
| AGAAAACCTAGTGATTTCTT+TGG | 0.323706 | 1_3:-17198553 | None:intergenic |
| AGAGCAATACCCTTTACTTT+TGG | 0.331691 | 1_3:-17198744 | None:intergenic |
| CCTAGTGATTTCTTTGGCTT+TGG | 0.332979 | 1_3:-17198547 | None:intergenic |
| AGAAGTATTGTGTCAGCATT+TGG | 0.339148 | 1_3:+17199774 | Msa0107180:three_prime_UTR |
| CTGGTCCTTTGAGTTTGCTT+TGG | 0.341746 | 1_3:-17197725 | None:intergenic |
| TAGGAAACTTAAGGAATATA+GGG | 0.346499 | 1_3:-17197340 | None:intergenic |
| TGTTCTCTTGAAAACTCATT+TGG | 0.346666 | 1_3:-17198301 | None:intergenic |
| AATATCTTGGAGTTGAAAAT+GGG | 0.359463 | 1_3:+17199444 | Msa0107180:CDS |
| TGAAACAGAGGATACCTAAT+TGG | 0.359645 | 1_3:+17195770 | Msa0107180:intron |
| CGACGTTAAATTTCGATGAA+TGG | 0.363870 | 1_3:+17195872 | Msa0107180:five_prime_UTR |
| TAATGGAACTACAACAATAA+GGG | 0.368234 | 1_3:+17198336 | Msa0107180:CDS |
| TGCTTTGCCCTTTAAAGTGC+TGG | 0.375844 | 1_3:+17199684 | Msa0107180:three_prime_UTR |
| ACTTTCTTCACCTTCTTCAA+TGG | 0.380996 | 1_3:-17197663 | None:intergenic |
| TCATGATTCATAAACTCCTT+TGG | 0.383485 | 1_3:-17199420 | None:intergenic |
| TATGAATCATGAAAATATCT+TGG | 0.394934 | 1_3:+17199431 | Msa0107180:CDS |
| CAACACCGTTAGGAAACTTA+AGG | 0.403140 | 1_3:-17197349 | None:intergenic |
| ATAGTTTATTTCTAAAGTAT+TGG | 0.406626 | 1_3:-17197516 | None:intergenic |
| CCTTAAAGAAGCACAGCTAA+TGG | 0.407485 | 1_3:-17199642 | None:intergenic |
| AGCAGCTCTGCAAGAGGCTA+AGG | 0.411495 | 1_3:+17195466 | Msa0107180:five_prime_UTR |
| GTGGTGGATGGAAAATATTC+AGG | 0.420444 | 1_3:+17198425 | Msa0107180:CDS |
| TAAATATCCAGCACTTTAAA+GGG | 0.428813 | 1_3:-17199691 | None:intergenic |
| TTTAGGTTCTATGATATTTG+TGG | 0.430149 | 1_3:+17199834 | Msa0107180:intron |
| AAAGAATGCAAAGTGGAGAT+TGG | 0.431700 | 1_3:+17199549 | Msa0107180:CDS |
| AGCTACAAAGGAACCATGCC+TGG | 0.433161 | 1_3:+17196023 | Msa0107180:CDS |
| AAATATTATGAGAGTCTTTG+TGG | 0.437608 | 1_3:+17199492 | Msa0107180:CDS |
| ATAGTAATTGTGAATGAAAG+TGG | 0.438268 | 1_3:-17195994 | None:intergenic |
| AGTCTTTGTGGCTGTAAGTT+CGG | 0.438865 | 1_3:+17199504 | Msa0107180:CDS |
| CAAACTCAAAGGACCAGAAA+TGG | 0.451853 | 1_3:+17197731 | Msa0107180:CDS |
| GGCATGGTTCCTTTGTAGCT+GGG | 0.456521 | 1_3:-17196020 | None:intergenic |
| GATATTTGTTCTGTGATTGT+TGG | 0.466702 | 1_3:+17199796 | Msa0107180:three_prime_UTR |
| TTAACTTTCAAATTCATTGG+TGG | 0.475675 | 1_3:+17197464 | Msa0107180:CDS |
| AGGAGCCATCCAAAAGTAAA+GGG | 0.477165 | 1_3:+17198735 | Msa0107180:CDS |
| TAGGAGCCATCCAAAAGTAA+AGG | 0.478853 | 1_3:+17198734 | Msa0107180:CDS |
| CAAAGTGGCCATGGTAAAGA+AGG | 0.488314 | 1_3:+17198109 | Msa0107180:CDS |
| TGAAAATGGGGAGAAAATCA+TGG | 0.492046 | 1_3:+17199457 | Msa0107180:CDS |
| TGACATTATAACTTCAAAAG+AGG | 0.495408 | 1_3:-17198171 | None:intergenic |
| TGTGGCTGTAAGTTCGGTAA+AGG | 0.504977 | 1_3:+17199510 | Msa0107180:CDS |
| CCATGCCTGGAGCAGTTTCA+AGG | 0.511461 | 1_3:+17196036 | Msa0107180:CDS |
| GCTGTAAGTTCGGTAAAGGT+TGG | 0.518813 | 1_3:+17199514 | Msa0107180:CDS |
| AAATACCTTGAAACTGCTCC+AGG | 0.519839 | 1_3:-17196041 | None:intergenic |
| AAGAGATATCCATATTTGAA+AGG | 0.520085 | 1_3:-17197443 | None:intergenic |
| TGGTTGGAAGTCGTTTGTGC+AGG | 0.521812 | 1_3:+17195918 | Msa0107180:CDS |
| AATGGCAAGAGAAAATTCTC+AGG | 0.523324 | 1_3:+17197749 | Msa0107180:CDS |
| GACATTATAACTTCAAAAGA+GGG | 0.525934 | 1_3:-17198170 | None:intergenic |
| AAGACATTGGAGGAACATCT+AGG | 0.526190 | 1_3:+17198715 | Msa0107180:CDS |
| GTGACTGTTACTGAAGTGTT+AGG | 0.532912 | 1_3:+17195375 | None:intergenic |
| GAAGGAGCACAAGACATTCA+AGG | 0.537945 | 1_3:+17199169 | Msa0107180:CDS |
| AATATCAAATCAGTTGATGA+AGG | 0.540855 | 1_3:+17197542 | Msa0107180:CDS |
| GATGAGGAAGCCATTGAAGA+AGG | 0.544836 | 1_3:+17197653 | Msa0107180:CDS |
| GCAAGAGGCTAAGGCTCTGA+TGG | 0.545145 | 1_3:+17195475 | Msa0107180:five_prime_UTR |
| CCAAAGCCAAAGAAATCACT+AGG | 0.556666 | 1_3:+17198547 | Msa0107180:CDS |
| GTAAATTTGAGATGATTCGA+CGG | 0.557247 | 1_3:+17198479 | Msa0107180:CDS |
| GTTGTAAAGAAGCAAGACAT+TGG | 0.558494 | 1_3:+17198702 | Msa0107180:CDS |
| CAATAAGGGTTGGTAATGAA+AGG | 0.558627 | 1_3:+17198350 | Msa0107180:CDS |
| TCCAGAAGGTCGTGATGTGA+AGG | 0.558641 | 1_3:+17199151 | Msa0107180:intron |
| AAGTGATGAATCAAGTGATG+AGG | 0.567308 | 1_3:+17197637 | Msa0107180:CDS |
| TACATGAAAGAGTTGTTGCA+AGG | 0.571480 | 1_3:+17195805 | Msa0107180:five_prime_UTR |
| AGGTAGTAACAAAGTGGCCA+TGG | 0.577811 | 1_3:+17198100 | Msa0107180:intron |
| CCTTGAAACTGCTCCAGGCA+TGG | 0.579128 | 1_3:-17196036 | None:intergenic |
| ACTTACAAAGAAATAGCCAT+TGG | 0.583056 | 1_3:-17198204 | None:intergenic |
| AATATTGTATGGGTGGTGGA+TGG | 0.587908 | 1_3:+17198413 | Msa0107180:CDS |
| GGTGCTGAAGACACAGAAGA+AGG | 0.588176 | 1_3:+17197563 | Msa0107180:CDS |
| ATATTCCTTAAGTTTCCTAA+CGG | 0.590322 | 1_3:+17197344 | Msa0107180:CDS |
| GAGTAATGAGAGTTCAGATG+AGG | 0.591415 | 1_3:+17197694 | Msa0107180:CDS |
| GAGGGTTCCAAAGAAATATG+TGG | 0.594786 | 1_3:+17197292 | Msa0107180:intron |
| AAGAGTAGCAGCTCTGCAAG+AGG | 0.595627 | 1_3:+17195460 | Msa0107180:five_prime_UTR |
| GGAACTACAACAATAAGGGT+TGG | 0.596420 | 1_3:+17198340 | Msa0107180:CDS |
| GTATCTGCAGTGTGTACCAA+AGG | 0.598126 | 1_3:+17199404 | Msa0107180:intron |
| GTAAAGAAGCAAGACATTGG+AGG | 0.602206 | 1_3:+17198705 | Msa0107180:CDS |
| ATGTCACAATCTTACGCCAA+TGG | 0.605717 | 1_3:+17198188 | Msa0107180:CDS |
| GGTTGGTAATGAAAGGAGTG+TGG | 0.605745 | 1_3:+17198357 | Msa0107180:CDS |
| TACTATTATCCCAGCTACAA+AGG | 0.605894 | 1_3:+17196011 | Msa0107180:CDS |
| ACATGAAAGAGTTGTTGCAA+GGG | 0.610644 | 1_3:+17195806 | Msa0107180:five_prime_UTR |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1_3:+17197308 | Msa0107180:CDS |
| ATTCATGAAAGAATGCAAAG+TGG | 0.625279 | 1_3:+17199542 | Msa0107180:CDS |
| CAGGAACATAACTTGCAAGC+TGG | 0.628096 | 1_3:+17195937 | Msa0107180:CDS |
| TTTCGTGAAGAACAAAACCC+CGG | 0.628138 | 1_3:+17199193 | Msa0107180:CDS |
| ATATCTTGGAGTTGAAAATG+GGG | 0.639227 | 1_3:+17199445 | Msa0107180:CDS |
| AACGATTAGAAATGTTGATG+AGG | 0.639795 | 1_3:+17195834 | Msa0107180:five_prime_UTR |
| AAATACCAAAGCAAACTCAA+AGG | 0.654830 | 1_3:+17197720 | Msa0107180:CDS |
| GGAGTGTGGAAGTGAGTGTG+AGG | 0.659449 | 1_3:+17198371 | Msa0107180:CDS |
| TAGCTTTAAGCATTGCTCAG+AGG | 0.663605 | 1_3:+17195428 | Msa0107180:five_prime_UTR |
| CTTGGCAGGTAGTAACAAAG+TGG | 0.671173 | 1_3:+17198094 | Msa0107180:intron |
| GAAGTGTTAGGACCAGACAA+AGG | 0.713261 | 1_3:+17195387 | Msa0107180:five_prime_UTR |
| ATGTTGATGAGGACATGACA+TGG | 0.737782 | 1_3:+17195845 | Msa0107180:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAAAATGTGATTTTTTT+TGG | + | chr1_3:17197952-17197971 | Msa0107180:intron | 10.0% |
| !! | AACCAAATACTTATATATTA+TGG | - | chr1_3:17196199-17196218 | None:intergenic | 15.0% |
| !!! | ATTTAATCAATTTTGTTTGT+TGG | + | chr1_3:17196477-17196496 | Msa0107180:intron | 15.0% |
| !!! | ATTTTCTATCTAATTTTTTC+TGG | - | chr1_3:17196922-17196941 | None:intergenic | 15.0% |
| !!! | TAAAGATATTTTTTGTAGTA+TGG | - | chr1_3:17196999-17197018 | None:intergenic | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | + | chr1_3:17197367-17197386 | Msa0107180:CDS | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | + | chr1_3:17197405-17197424 | Msa0107180:CDS | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | + | chr1_3:17197406-17197425 | Msa0107180:CDS | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | + | chr1_3:17197491-17197510 | Msa0107180:CDS | 15.0% |
| !!! | ATAGTTTATTTCTAAAGTAT+TGG | - | chr1_3:17197519-17197538 | None:intergenic | 15.0% |
| !!! | TTATTTTAAGAGTTATTGAA+TGG | + | chr1_3:17197851-17197870 | Msa0107180:intron | 15.0% |
| !!! | TTCTTTCTTTCTTTTTTATT+TGG | + | chr1_3:17198572-17198591 | Msa0107180:intron | 15.0% |
| !!! | TTTAGATTTTATTATTGTAG+AGG | + | chr1_3:17198781-17198800 | Msa0107180:intron | 15.0% |
| !!! | TTAGATTTTATTATTGTAGA+GGG | + | chr1_3:17198782-17198801 | Msa0107180:intron | 15.0% |
| !! | AAACTTATGAATGATTTATA+AGG | + | chr1_3:17198872-17198891 | Msa0107180:intron | 15.0% |
| !! | TAAAAAATATTTCAATTCAC+AGG | - | chr1_3:17198948-17198967 | None:intergenic | 15.0% |
| !! | ATTTGAATAGATTTATAGTT+AGG | - | chr1_3:17199065-17199084 | None:intergenic | 15.0% |
| !!! | TCAAATGTATCTAAATTTTT+TGG | + | chr1_3:17199079-17199098 | Msa0107180:intron | 15.0% |
| !!! | CAAATGTATCTAAATTTTTT+GGG | + | chr1_3:17199080-17199099 | Msa0107180:intron | 15.0% |
| !! | TTTATGTAATTATATCTTAC+CGG | - | chr1_3:17199215-17199234 | None:intergenic | 15.0% |
| !! | ATTCATTAATCAAACGTATA+AGG | - | chr1_3:17195718-17195737 | None:intergenic | 20.0% |
| !!! | TATTCTTTTGAAATCCAATT+AGG | - | chr1_3:17195787-17195806 | None:intergenic | 20.0% |
| !!! | TCTTTCGTTATTATTGTTTT+TGG | + | chr1_3:17196063-17196082 | Msa0107180:intron | 20.0% |
| !! | CACCATAATATATAAGTATT+TGG | + | chr1_3:17196194-17196213 | Msa0107180:intron | 20.0% |
| !! | ATTATGCATGTATATATTAC+AGG | + | chr1_3:17196260-17196279 | Msa0107180:intron | 20.0% |
| !! | TTATGCATGTATATATTACA+GGG | + | chr1_3:17196261-17196280 | Msa0107180:intron | 20.0% |
| !!! | AATATATTCCAGATTTTCAT+AGG | + | chr1_3:17197127-17197146 | Msa0107180:intron | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | + | chr1_3:17197366-17197385 | Msa0107180:CDS | 20.0% |
| !!! | AAAATGTGATTTTTTTTGGT+AGG | + | chr1_3:17197956-17197975 | Msa0107180:intron | 20.0% |
| !! | ATAGTAACATTGAATGAAAT+TGG | - | chr1_3:17198508-17198527 | None:intergenic | 20.0% |
| !! | TTATGTAATTATATCTTACC+GGG | - | chr1_3:17199214-17199233 | None:intergenic | 20.0% |
| !! | AGGTTAAAAGTTAATAGAAT+GGG | - | chr1_3:17199327-17199346 | None:intergenic | 20.0% |
| !! | TACAAACAAAAATATTAGTG+AGG | - | chr1_3:17199387-17199406 | None:intergenic | 20.0% |
| !! | TATGAATCATGAAAATATCT+TGG | + | chr1_3:17199431-17199450 | Msa0107180:CDS | 20.0% |
| !!! | ACAATTTTAAGCAATGTATT+TGG | + | chr1_3:17199719-17199738 | Msa0107180:three_prime_UTR | 20.0% |
| !!! | TATGTTGTTTTAGTTGAGTT+TGG | + | chr1_3:17195654-17195673 | Msa0107180:intron | 25.0% |
| ! | ACCTTATTACAACATATAAG+CGG | - | chr1_3:17195690-17195709 | None:intergenic | 25.0% |
| ! | TATATGTTGTAATAAGGTTC+AGG | + | chr1_3:17195692-17195711 | Msa0107180:intron | 25.0% |
| ! | ATAGTAATTGTGAATGAAAG+TGG | - | chr1_3:17195997-17196016 | None:intergenic | 25.0% |
| ! | TCAATCATATATGTTCATCA+TGG | + | chr1_3:17196165-17196184 | Msa0107180:intron | 25.0% |
| !!! | GGTTTTAGTCATTCTAATAT+TGG | + | chr1_3:17196215-17196234 | Msa0107180:intron | 25.0% |
| !!! | AGTTTTTTTCCAAGTACTAA+AGG | + | chr1_3:17196368-17196387 | Msa0107180:intron | 25.0% |
| ! | TATATATCACCTTTAGTACT+TGG | - | chr1_3:17196380-17196399 | None:intergenic | 25.0% |
| !! | ACTTTATGATGACATAGTTT+TGG | - | chr1_3:17196527-17196546 | None:intergenic | 25.0% |
| !!! | TTTTTACATAAGGTACTGTA+GGG | - | chr1_3:17196735-17196754 | None:intergenic | 25.0% |
| !!! | ATTTTTACATAAGGTACTGT+AGG | - | chr1_3:17196736-17196755 | None:intergenic | 25.0% |
| ! | TACAGTACCTTATGTAAAAA+TGG | + | chr1_3:17196735-17196754 | Msa0107180:intron | 25.0% |
| !!! | ATATCTGCCATTTTTACATA+AGG | - | chr1_3:17196745-17196764 | None:intergenic | 25.0% |
| ! | TGTAAAAATGGCAGATATTA+AGG | + | chr1_3:17196747-17196766 | Msa0107180:intron | 25.0% |
| ! | GTAAAAATGGCAGATATTAA+GGG | + | chr1_3:17196748-17196767 | Msa0107180:intron | 25.0% |
| ! | GCATACATTAAAAAACACAA+TGG | - | chr1_3:17196780-17196799 | None:intergenic | 25.0% |
| !!! | CTTTTTTATCGTGTCATAAA+TGG | + | chr1_3:17196866-17196885 | Msa0107180:intron | 25.0% |
| ! | TATTTCTCCACATATTTCTT+TGG | - | chr1_3:17197302-17197321 | None:intergenic | 25.0% |
| ! | AGAAATATGTGGAGAAATAT+TGG | + | chr1_3:17197303-17197322 | Msa0107180:CDS | 25.0% |
| ! | TAGGAAACTTAAGGAATATA+GGG | - | chr1_3:17197343-17197362 | None:intergenic | 25.0% |
| ! | TTAGGAAACTTAAGGAATAT+AGG | - | chr1_3:17197344-17197363 | None:intergenic | 25.0% |
| ! | ATATTCCTTAAGTTTCCTAA+CGG | + | chr1_3:17197344-17197363 | Msa0107180:CDS | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | + | chr1_3:17197370-17197389 | Msa0107180:CDS | 25.0% |
| ! | AAGAGATATCCATATTTGAA+AGG | - | chr1_3:17197446-17197465 | None:intergenic | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | + | chr1_3:17197461-17197480 | Msa0107180:CDS | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | + | chr1_3:17197464-17197483 | Msa0107180:CDS | 25.0% |
| !!! | TTCATCAACTGATTTGATAT+TGG | - | chr1_3:17197543-17197562 | None:intergenic | 25.0% |
| !!! | AATATCAAATCAGTTGATGA+AGG | + | chr1_3:17197542-17197561 | Msa0107180:CDS | 25.0% |
| ! | AAATAGTTAATGCCTAAACT+TGG | + | chr1_3:17198076-17198095 | Msa0107180:intron | 25.0% |
| ! | GACATTATAACTTCAAAAGA+GGG | - | chr1_3:17198173-17198192 | None:intergenic | 25.0% |
| ! | TGACATTATAACTTCAAAAG+AGG | - | chr1_3:17198174-17198193 | None:intergenic | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+TGG | + | chr1_3:17198319-17198338 | Msa0107180:CDS | 25.0% |
| ! | TTAATGGAACTACAACAATA+AGG | + | chr1_3:17198335-17198354 | Msa0107180:CDS | 25.0% |
| ! | TAATGGAACTACAACAATAA+GGG | + | chr1_3:17198336-17198355 | Msa0107180:CDS | 25.0% |
| ! | TACCCAGAAAAAATATTGTA+TGG | + | chr1_3:17198402-17198421 | Msa0107180:CDS | 25.0% |
| ! | ACCCAGAAAAAATATTGTAT+GGG | + | chr1_3:17198403-17198422 | Msa0107180:CDS | 25.0% |
| !!! | ACCCATACAATATTTTTTCT+GGG | - | chr1_3:17198407-17198426 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTTATCCATGACA+AGG | + | chr1_3:17198648-17198667 | Msa0107180:intron | 25.0% |
| ! | CATGACAAGGTTATAAAAAA+GGG | + | chr1_3:17198661-17198680 | Msa0107180:intron | 25.0% |
| ! | ATGACAAGGTTATAAAAAAG+GGG | + | chr1_3:17198662-17198681 | Msa0107180:intron | 25.0% |
| ! | TGAATGATTTATAAGGTTCT+TGG | + | chr1_3:17198879-17198898 | Msa0107180:intron | 25.0% |
| ! | TAAAAGAAGAAACTGAAAAC+TGG | - | chr1_3:17199034-17199053 | None:intergenic | 25.0% |
| ! | TATGTAATTATATCTTACCG+GGG | - | chr1_3:17199213-17199232 | None:intergenic | 25.0% |
| ! | ATTGAACGAAAGTTAGTTAT+GGG | - | chr1_3:17199268-17199287 | None:intergenic | 25.0% |
| ! | AATTGAACGAAAGTTAGTTA+TGG | - | chr1_3:17199269-17199288 | None:intergenic | 25.0% |
| ! | GAGGTTAAAAGTTAATAGAA+TGG | - | chr1_3:17199328-17199347 | None:intergenic | 25.0% |
| !! | CTTTTAACCTCTAATGTATA+AGG | + | chr1_3:17199337-17199356 | Msa0107180:intron | 25.0% |
| ! | AAATATCTTGGAGTTGAAAA+TGG | + | chr1_3:17199443-17199462 | Msa0107180:CDS | 25.0% |
| ! | AATATCTTGGAGTTGAAAAT+GGG | + | chr1_3:17199444-17199463 | Msa0107180:CDS | 25.0% |
| ! | AAATATTATGAGAGTCTTTG+TGG | + | chr1_3:17199492-17199511 | Msa0107180:CDS | 25.0% |
| ! | TAAATATCCAGCACTTTAAA+GGG | - | chr1_3:17199694-17199713 | None:intergenic | 25.0% |
| ! | ATAAATATCCAGCACTTTAA+AGG | - | chr1_3:17199695-17199714 | None:intergenic | 25.0% |
| !! | TTTAGGTTCTATGATATTTG+TGG | + | chr1_3:17199834-17199853 | Msa0107180:intron | 25.0% |
| ! | TTCTGAATTTTTCCTTTGTC+TGG | - | chr1_3:17195402-17195421 | None:intergenic | 30.0% |
| CATGACAGTCAAACATATTT+GGG | - | chr1_3:17195559-17195578 | None:intergenic | 30.0% | |
| TCATGACAGTCAAACATATT+TGG | - | chr1_3:17195560-17195579 | None:intergenic | 30.0% | |
| AACGATTAGAAATGTTGATG+AGG | + | chr1_3:17195834-17195853 | Msa0107180:five_prime_UTR | 30.0% | |
| !!! | TTTGGCTCAAATCACTTTTT+AGG | - | chr1_3:17196509-17196528 | None:intergenic | 30.0% |
| GAATGAAACATTCAATGACT+CGG | + | chr1_3:17196584-17196603 | Msa0107180:intron | 30.0% | |
| !!! | CTTTTAATTTGCCACAAAAG+TGG | - | chr1_3:17196668-17196687 | None:intergenic | 30.0% |
| !!! | TTTTTCTGGTGTTACTACTT+TGG | - | chr1_3:17196908-17196927 | None:intergenic | 30.0% |
| AAGATGATCCTATGAAAATC+TGG | - | chr1_3:17197138-17197157 | None:intergenic | 30.0% | |
| TTTGAATTTCTTTGTTGCAG+AGG | + | chr1_3:17197273-17197292 | Msa0107180:intron | 30.0% | |
| TTGAATTTCTTTGTTGCAGA+GGG | + | chr1_3:17197274-17197293 | Msa0107180:intron | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | + | chr1_3:17197308-17197327 | Msa0107180:CDS | 30.0% | |
| !!! | ATTTTTTGTTCAACACCGTT+AGG | - | chr1_3:17197362-17197381 | None:intergenic | 30.0% |
| TTTGCAAAGCCTTTCAAATA+TGG | + | chr1_3:17197434-17197453 | Msa0107180:CDS | 30.0% | |
| !! | CATTGGTGGATCATATTTTA+AGG | + | chr1_3:17197478-17197497 | Msa0107180:CDS | 30.0% |
| AAATACCAAAGCAAACTCAA+AGG | + | chr1_3:17197720-17197739 | Msa0107180:CDS | 30.0% | |
| !!! | ATTCTCAGGTTGATCTTTTT+TGG | + | chr1_3:17197763-17197782 | Msa0107180:intron | 30.0% |
| !!! | TTCTCAGGTTGATCTTTTTT+GGG | + | chr1_3:17197764-17197783 | Msa0107180:intron | 30.0% |
| !!! | GATCTTTTTTGGGTAGATTT+AGG | + | chr1_3:17197774-17197793 | Msa0107180:intron | 30.0% |
| ! | AGAGTTATTGAATGGTTTGT+TGG | + | chr1_3:17197859-17197878 | Msa0107180:intron | 30.0% |
| ! | GTTGGAATTTTATGTCTGAA+AGG | + | chr1_3:17197877-17197896 | Msa0107180:intron | 30.0% |
| CATTAACATCTTCAGATCTT+AGG | - | chr1_3:17198145-17198164 | None:intergenic | 30.0% | |
| ACTTACAAAGAAATAGCCAT+TGG | - | chr1_3:17198207-17198226 | None:intergenic | 30.0% | |
| TAAACCATTACTTGAAACAG+TGG | + | chr1_3:17198275-17198294 | Msa0107180:intron | 30.0% | |
| TGTTCTCTTGAAAACTCATT+TGG | - | chr1_3:17198304-17198323 | None:intergenic | 30.0% | |
| !!! | CACCCATACAATATTTTTTC+TGG | - | chr1_3:17198408-17198427 | None:intergenic | 30.0% |
| CAGAAAAAATATTGTATGGG+TGG | + | chr1_3:17198406-17198425 | Msa0107180:CDS | 30.0% | |
| AAAAAATATTGTATGGGTGG+TGG | + | chr1_3:17198409-17198428 | Msa0107180:CDS | 30.0% | |
| ! | GTAAATTTGAGATGATTCGA+CGG | + | chr1_3:17198479-17198498 | Msa0107180:CDS | 30.0% |
| AGAAAACCTAGTGATTTCTT+TGG | - | chr1_3:17198556-17198575 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTATAACCTTGTCA+TGG | - | chr1_3:17198663-17198682 | None:intergenic | 30.0% |
| CCATGACAAGGTTATAAAAA+AGG | + | chr1_3:17198660-17198679 | Msa0107180:intron | 30.0% | |
| ! | AATGGGATTAACTTGACTAA+CGG | - | chr1_3:17199310-17199329 | None:intergenic | 30.0% |
| TTAACCTCTAATGTATAAGG+TGG | + | chr1_3:17199340-17199359 | Msa0107180:intron | 30.0% | |
| TCATGATTCATAAACTCCTT+TGG | - | chr1_3:17199423-17199442 | None:intergenic | 30.0% | |
| ATATCTTGGAGTTGAAAATG+GGG | + | chr1_3:17199445-17199464 | Msa0107180:CDS | 30.0% | |
| ATTCATGAAAGAATGCAAAG+TGG | + | chr1_3:17199542-17199561 | Msa0107180:CDS | 30.0% | |
| GTGTTTGATGTTTCAATTGT+AGG | + | chr1_3:17199612-17199631 | Msa0107180:CDS | 30.0% | |
| GATATTTGTTCTGTGATTGT+TGG | + | chr1_3:17199796-17199815 | Msa0107180:three_prime_UTR | 30.0% | |
| ! | GGTAATGTGCTTTAAACTTT+AGG | + | chr1_3:17199817-17199836 | Msa0107180:intron | 30.0% |
| ATCCAAACTCGTTCCAAAAA+GGG | + | chr1_3:17195517-17195536 | Msa0107180:intron | 35.0% | |
| !! | GCTTTTGATTACACCCTTTT+TGG | - | chr1_3:17195533-17195552 | None:intergenic | 35.0% |
| ATGCAAAGAAGCAAATCAAC+TGG | - | chr1_3:17195633-17195652 | None:intergenic | 35.0% | |
| GCCGCTTATATGTTGTAATA+AGG | + | chr1_3:17195686-17195705 | Msa0107180:intron | 35.0% | |
| ! | TAAACCATGATCTGAAACAG+AGG | + | chr1_3:17195758-17195777 | Msa0107180:intron | 35.0% |
| TGAAACAGAGGATACCTAAT+TGG | + | chr1_3:17195770-17195789 | Msa0107180:intron | 35.0% | |
| TACATGAAAGAGTTGTTGCA+AGG | + | chr1_3:17195805-17195824 | Msa0107180:five_prime_UTR | 35.0% | |
| ACATGAAAGAGTTGTTGCAA+GGG | + | chr1_3:17195806-17195825 | Msa0107180:five_prime_UTR | 35.0% | |
| CGACGTTAAATTTCGATGAA+TGG | + | chr1_3:17195872-17195891 | Msa0107180:five_prime_UTR | 35.0% | |
| TACTATTATCCCAGCTACAA+AGG | + | chr1_3:17196011-17196030 | Msa0107180:CDS | 35.0% | |
| GTGATGATACACACACAAAT+AGG | + | chr1_3:17196631-17196650 | Msa0107180:intron | 35.0% | |
| !! | ACAAAGCAAATCCACTTTTG+TGG | + | chr1_3:17196654-17196673 | Msa0107180:intron | 35.0% |
| ACTTTATTACTGTCCAGTAC+AGG | - | chr1_3:17196964-17196983 | None:intergenic | 35.0% | |
| ACTGGACAGTAATAAAGTCT+TGG | + | chr1_3:17196966-17196985 | Msa0107180:intron | 35.0% | |
| !! | GGTGAAAGATTTTGAGTGTT+AGG | - | chr1_3:17197055-17197074 | None:intergenic | 35.0% |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | + | chr1_3:17197380-17197399 | Msa0107180:CDS | 35.0% |
| TGGAGAGTAATGGTGATATT+TGG | + | chr1_3:17197390-17197409 | Msa0107180:CDS | 35.0% | |
| AAGTGATGAATCAAGTGATG+AGG | + | chr1_3:17197637-17197656 | Msa0107180:CDS | 35.0% | |
| ACTTTCTTCACCTTCTTCAA+TGG | - | chr1_3:17197666-17197685 | None:intergenic | 35.0% | |
| !! | GAATTTTCTCTTGCCATTTC+TGG | - | chr1_3:17197747-17197766 | None:intergenic | 35.0% |
| AATGGCAAGAGAAAATTCTC+AGG | + | chr1_3:17197749-17197768 | Msa0107180:CDS | 35.0% | |
| !! | TTTTCTAGCCTTCTTTACCA+TGG | - | chr1_3:17198120-17198139 | None:intergenic | 35.0% |
| ! | GTATCCACTGTTTCAAGTAA+TGG | - | chr1_3:17198282-17198301 | None:intergenic | 35.0% |
| !! | CAATAAGGGTTGGTAATGAA+AGG | + | chr1_3:17198350-17198369 | Msa0107180:CDS | 35.0% |
| TATAAAAAAGGGGTCTCTTG+TGG | + | chr1_3:17198672-17198691 | Msa0107180:CDS | 35.0% | |
| GTTGTAAAGAAGCAAGACAT+TGG | + | chr1_3:17198702-17198721 | Msa0107180:CDS | 35.0% | |
| !! | CAATACCCTTTACTTTTGGA+TGG | - | chr1_3:17198743-17198762 | None:intergenic | 35.0% |
| ! | AGAGCAATACCCTTTACTTT+TGG | - | chr1_3:17198747-17198766 | None:intergenic | 35.0% |
| TGAAAATGGGGAGAAAATCA+TGG | + | chr1_3:17199457-17199476 | Msa0107180:CDS | 35.0% | |
| AAAGAATGCAAAGTGGAGAT+TGG | + | chr1_3:17199549-17199568 | Msa0107180:CDS | 35.0% | |
| ATGCTGACACAATACTTCTT+AGG | - | chr1_3:17199773-17199792 | None:intergenic | 35.0% | |
| !! | AGAAGTATTGTGTCAGCATT+TGG | + | chr1_3:17199774-17199793 | Msa0107180:three_prime_UTR | 35.0% |
| !! | TAGCTTTAAGCATTGCTCAG+AGG | + | chr1_3:17195428-17195447 | Msa0107180:five_prime_UTR | 40.0% |
| CATCCAAACTCGTTCCAAAA+AGG | + | chr1_3:17195516-17195535 | Msa0107180:intron | 40.0% | |
| GTATCCTCTGTTTCAGATCA+TGG | - | chr1_3:17195765-17195784 | None:intergenic | 40.0% | |
| ! | ATGTTGATGAGGACATGACA+TGG | + | chr1_3:17195845-17195864 | Msa0107180:five_prime_UTR | 40.0% |
| !! | TGAAATTTTGCTATGCGAGC+TGG | + | chr1_3:17195898-17195917 | Msa0107180:exon | 40.0% |
| AAATACCTTGAAACTGCTCC+AGG | - | chr1_3:17196044-17196063 | None:intergenic | 40.0% | |
| !! | CAAGCACTGAAACAGAACAA+TGG | + | chr1_3:17196310-17196329 | Msa0107180:intron | 40.0% |
| CATTGTGAGCTCATGTGAAA+TGG | + | chr1_3:17196708-17196727 | Msa0107180:intron | 40.0% | |
| !! | TGGTGTTACTACTTTGGTGT+TGG | - | chr1_3:17196902-17196921 | None:intergenic | 40.0% |
| TTTCTCTACATGACCTGTAC+TGG | + | chr1_3:17196948-17196967 | Msa0107180:intron | 40.0% | |
| !! | AGTGAGTGAGTATTGAGCTA+AGG | - | chr1_3:17197091-17197110 | None:intergenic | 40.0% |
| GAGGGTTCCAAAGAAATATG+TGG | + | chr1_3:17197292-17197311 | Msa0107180:intron | 40.0% | |
| CAACACCGTTAGGAAACTTA+AGG | - | chr1_3:17197352-17197371 | None:intergenic | 40.0% | |
| GAGTAATGAGAGTTCAGATG+AGG | + | chr1_3:17197694-17197713 | Msa0107180:CDS | 40.0% | |
| CAAACTCAAAGGACCAGAAA+TGG | + | chr1_3:17197731-17197750 | Msa0107180:CDS | 40.0% | |
| AGTTAATGCCTAAACTTGGC+AGG | + | chr1_3:17198080-17198099 | Msa0107180:intron | 40.0% | |
| TGTTACTACCTGCCAAGTTT+AGG | - | chr1_3:17198091-17198110 | None:intergenic | 40.0% | |
| ATGTCACAATCTTACGCCAA+TGG | + | chr1_3:17198188-17198207 | Msa0107180:CDS | 40.0% | |
| GGAACTACAACAATAAGGGT+TGG | + | chr1_3:17198340-17198359 | Msa0107180:CDS | 40.0% | |
| !! | AATATTGTATGGGTGGTGGA+TGG | + | chr1_3:17198413-17198432 | Msa0107180:CDS | 40.0% |
| !! | GTGGTGGATGGAAAATATTC+AGG | + | chr1_3:17198425-17198444 | Msa0107180:CDS | 40.0% |
| !!! | CTTTGGCTTTGGTTCGTTTT+TGG | - | chr1_3:17198539-17198558 | None:intergenic | 40.0% |
| ! | CCTAGTGATTTCTTTGGCTT+TGG | - | chr1_3:17198550-17198569 | None:intergenic | 40.0% |
| CCAAAGCCAAAGAAATCACT+AGG | + | chr1_3:17198547-17198566 | Msa0107180:CDS | 40.0% | |
| GTAAAGAAGCAAGACATTGG+AGG | + | chr1_3:17198705-17198724 | Msa0107180:CDS | 40.0% | |
| AAGACATTGGAGGAACATCT+AGG | + | chr1_3:17198715-17198734 | Msa0107180:CDS | 40.0% | |
| TAGGAGCCATCCAAAAGTAA+AGG | + | chr1_3:17198734-17198753 | Msa0107180:CDS | 40.0% | |
| AGGAGCCATCCAAAAGTAAA+GGG | + | chr1_3:17198735-17198754 | Msa0107180:CDS | 40.0% | |
| TGTGTTTATGCATGTCCAGA+AGG | + | chr1_3:17199137-17199156 | Msa0107180:intron | 40.0% | |
| TTTCGTGAAGAACAAAACCC+CGG | + | chr1_3:17199193-17199212 | Msa0107180:CDS | 40.0% | |
| GTGTCCACCTTATACATTAG+AGG | - | chr1_3:17199347-17199366 | None:intergenic | 40.0% | |
| AGTCTTTGTGGCTGTAAGTT+CGG | + | chr1_3:17199504-17199523 | Msa0107180:CDS | 40.0% | |
| ! | CCTTAAAGAAGCACAGCTAA+TGG | - | chr1_3:17199645-17199664 | None:intergenic | 40.0% |
| CCATTAGCTGTGCTTCTTTA+AGG | + | chr1_3:17199642-17199661 | Msa0107180:CDS | 40.0% | |
| ! | GAAGTGTTAGGACCAGACAA+AGG | + | chr1_3:17195387-17195406 | Msa0107180:five_prime_UTR | 45.0% |
| !!! | CACCCTTTTTGGAACGAGTT+TGG | - | chr1_3:17195522-17195541 | None:intergenic | 45.0% |
| !! | ATTTTGCTATGCGAGCTGGT+TGG | + | chr1_3:17195902-17195921 | Msa0107180:exon | 45.0% |
| ! | CAGGAACATAACTTGCAAGC+TGG | + | chr1_3:17195937-17195956 | Msa0107180:CDS | 45.0% |
| TGTATGCAGTGTGAGACTGT+TGG | + | chr1_3:17196793-17196812 | Msa0107180:intron | 45.0% | |
| AGCTAAGGCTTAGAGAAGTG+AGG | - | chr1_3:17197076-17197095 | None:intergenic | 45.0% | |
| GATGAGGAAGCCATTGAAGA+AGG | + | chr1_3:17197653-17197672 | Msa0107180:CDS | 45.0% | |
| ! | CTGGTCCTTTGAGTTTGCTT+TGG | - | chr1_3:17197728-17197747 | None:intergenic | 45.0% |
| CTTGGCAGGTAGTAACAAAG+TGG | + | chr1_3:17198094-17198113 | Msa0107180:intron | 45.0% | |
| AGGTAGTAACAAAGTGGCCA+TGG | + | chr1_3:17198100-17198119 | Msa0107180:intron | 45.0% | |
| CAAAGTGGCCATGGTAAAGA+AGG | + | chr1_3:17198109-17198128 | Msa0107180:CDS | 45.0% | |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | + | chr1_3:17198357-17198376 | Msa0107180:CDS | 45.0% |
| ! | GAAGGAGCACAAGACATTCA+AGG | + | chr1_3:17199169-17199188 | Msa0107180:CDS | 45.0% |
| GTATCTGCAGTGTGTACCAA+AGG | + | chr1_3:17199404-17199423 | Msa0107180:intron | 45.0% | |
| TGTGGCTGTAAGTTCGGTAA+AGG | + | chr1_3:17199510-17199529 | Msa0107180:CDS | 45.0% | |
| GCTGTAAGTTCGGTAAAGGT+TGG | + | chr1_3:17199514-17199533 | Msa0107180:CDS | 45.0% | |
| !! | TGCTTTGCCCTTTAAAGTGC+TGG | + | chr1_3:17199684-17199703 | Msa0107180:three_prime_UTR | 45.0% |
| !! | ATAAATAATAAATACTTAAT+TGG | + | chr1_3:17198007-17198026 | Msa0107180:intron | 5.0% |
| !! | ATTATATATATTTCTTAATT+TGG | + | chr1_3:17198844-17198863 | Msa0107180:intron | 5.0% |
| AAGAGTAGCAGCTCTGCAAG+AGG | + | chr1_3:17195460-17195479 | Msa0107180:five_prime_UTR | 50.0% | |
| TGGTTGGAAGTCGTTTGTGC+AGG | + | chr1_3:17195918-17195937 | Msa0107180:CDS | 50.0% | |
| GGCATGGTTCCTTTGTAGCT+GGG | - | chr1_3:17196023-17196042 | None:intergenic | 50.0% | |
| AGGCATGGTTCCTTTGTAGC+TGG | - | chr1_3:17196024-17196043 | None:intergenic | 50.0% | |
| AGCTACAAAGGAACCATGCC+TGG | + | chr1_3:17196023-17196042 | Msa0107180:CDS | 50.0% | |
| ! | GGTGCTGAAGACACAGAAGA+AGG | + | chr1_3:17197563-17197582 | Msa0107180:CDS | 50.0% |
| TCCAGAAGGTCGTGATGTGA+AGG | + | chr1_3:17199151-17199170 | Msa0107180:intron | 50.0% | |
| TCCTTCACATCACGACCTTC+TGG | - | chr1_3:17199155-17199174 | None:intergenic | 50.0% | |
| AGCAGCTCTGCAAGAGGCTA+AGG | + | chr1_3:17195466-17195485 | Msa0107180:five_prime_UTR | 55.0% | |
| ! | GCAAGAGGCTAAGGCTCTGA+TGG | + | chr1_3:17195475-17195494 | Msa0107180:five_prime_UTR | 55.0% |
| CCTTGAAACTGCTCCAGGCA+TGG | - | chr1_3:17196039-17196058 | None:intergenic | 55.0% | |
| CCATGCCTGGAGCAGTTTCA+AGG | + | chr1_3:17196036-17196055 | Msa0107180:CDS | 55.0% | |
| GGAGTGTGGAAGTGAGTGTG+AGG | + | chr1_3:17198371-17198390 | Msa0107180:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 17195378 | 17199917 | 17195378 | ID=Msa0107180;Name=Msa0107180 |
| chr1_3 | mRNA | 17195378 | 17199917 | 17195378 | ID=Msa0107180-mRNA-1;Parent=Msa0107180;Name=Msa0107180-mRNA-1;_AED=0.04;_eAED=0.04;_QI=263|0.55|0.6|0.9|0.77|0.6|10|234|482 |
| chr1_3 | exon | 17195378 | 17195508 | 17195378 | ID=Msa0107180-mRNA-1:exon:6504;Parent=Msa0107180-mRNA-1 |
| chr1_3 | exon | 17195778 | 17196057 | 17195778 | ID=Msa0107180-mRNA-1:exon:6505;Parent=Msa0107180-mRNA-1 |
| chr1_3 | exon | 17197139 | 17197173 | 17197139 | ID=Msa0107180-mRNA-1:exon:6506;Parent=Msa0107180-mRNA-1 |
| chr1_3 | exon | 17197293 | 17197770 | 17197293 | ID=Msa0107180-mRNA-1:exon:6507;Parent=Msa0107180-mRNA-1 |
| chr1_3 | exon | 17198102 | 17198220 | 17198102 | ID=Msa0107180-mRNA-1:exon:6508;Parent=Msa0107180-mRNA-1 |
| chr1_3 | exon | 17198295 | 17198568 | 17198295 | ID=Msa0107180-mRNA-1:exon:6509;Parent=Msa0107180-mRNA-1 |
| chr1_3 | exon | 17198670 | 17198756 | 17198670 | ID=Msa0107180-mRNA-1:exon:6510;Parent=Msa0107180-mRNA-1 |
| chr1_3 | exon | 17199156 | 17199214 | 17199156 | ID=Msa0107180-mRNA-1:exon:6511;Parent=Msa0107180-mRNA-1 |
| chr1_3 | exon | 17199414 | 17199817 | 17199414 | ID=Msa0107180-mRNA-1:exon:6512;Parent=Msa0107180-mRNA-1 |
| chr1_3 | exon | 17199839 | 17199917 | 17199839 | ID=Msa0107180-mRNA-1:exon:6513;Parent=Msa0107180-mRNA-1 |
| chr1_3 | five_prime_UTR | 17195378 | 17195508 | 17195378 | ID=Msa0107180-mRNA-1:five_prime_utr;Parent=Msa0107180-mRNA-1 |
| chr1_3 | five_prime_UTR | 17195778 | 17195909 | 17195778 | ID=Msa0107180-mRNA-1:five_prime_utr;Parent=Msa0107180-mRNA-1 |
| chr1_3 | CDS | 17195910 | 17196057 | 17195910 | ID=Msa0107180-mRNA-1:cds;Parent=Msa0107180-mRNA-1 |
| chr1_3 | CDS | 17197139 | 17197173 | 17197139 | ID=Msa0107180-mRNA-1:cds;Parent=Msa0107180-mRNA-1 |
| chr1_3 | CDS | 17197293 | 17197770 | 17197293 | ID=Msa0107180-mRNA-1:cds;Parent=Msa0107180-mRNA-1 |
| chr1_3 | CDS | 17198102 | 17198220 | 17198102 | ID=Msa0107180-mRNA-1:cds;Parent=Msa0107180-mRNA-1 |
| chr1_3 | CDS | 17198295 | 17198568 | 17198295 | ID=Msa0107180-mRNA-1:cds;Parent=Msa0107180-mRNA-1 |
| chr1_3 | CDS | 17198670 | 17198756 | 17198670 | ID=Msa0107180-mRNA-1:cds;Parent=Msa0107180-mRNA-1 |
| chr1_3 | CDS | 17199156 | 17199214 | 17199156 | ID=Msa0107180-mRNA-1:cds;Parent=Msa0107180-mRNA-1 |
| chr1_3 | CDS | 17199414 | 17199662 | 17199414 | ID=Msa0107180-mRNA-1:cds;Parent=Msa0107180-mRNA-1 |
| chr1_3 | three_prime_UTR | 17199663 | 17199817 | 17199663 | ID=Msa0107180-mRNA-1:three_prime_utr;Parent=Msa0107180-mRNA-1 |
| chr1_3 | three_prime_UTR | 17199839 | 17199917 | 17199839 | ID=Msa0107180-mRNA-1:three_prime_utr;Parent=Msa0107180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
