Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0215680 | XP_039688434.1 | 73.068 | 453 | 90 | 5 | 45 | 482 | 3 | 438 | 0.0 | 656 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0215680 | sp|Q8L3W1|VRN1_ARATH | 26.347 | 334 | 199 | 11 | 51 | 340 | 6 | 336 | 1.21e-20 | 96.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0215680 | A0A396JPN4 | 73.068 | 453 | 90 | 5 | 45 | 482 | 3 | 438 | 0.0 | 656 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0215680 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013670 | Msa0215680 | 0.845637 | 3.587634e-59 | -8.615850e-47 |
| Msa0017510 | Msa0215680 | 0.821685 | 3.541210e-53 | -8.615850e-47 |
| Msa0062600 | Msa0215680 | 0.939805 | 6.840988e-100 | -8.615850e-47 |
| Msa0067940 | Msa0215680 | 0.835444 | 1.671680e-56 | -8.615850e-47 |
| Msa0107020 | Msa0215680 | 0.928143 | 4.380391e-92 | -8.615850e-47 |
| Msa0107120 | Msa0215680 | 0.984072 | 1.652688e-159 | -8.615850e-47 |
| Msa0107180 | Msa0215680 | 0.990221 | 1.283517e-181 | -8.615850e-47 |
| Msa0128020 | Msa0215680 | 0.811506 | 6.766604e-51 | -8.615850e-47 |
| Msa0139060 | Msa0215680 | 0.806586 | 7.656471e-50 | -8.615850e-47 |
| Msa0157290 | Msa0215680 | 0.821660 | 3.587851e-53 | -8.615850e-47 |
| Msa0165220 | Msa0215680 | 0.805102 | 1.569444e-49 | -8.615850e-47 |
| Msa0215680 | Msa0222890 | 0.812797 | 3.537794e-51 | -8.615850e-47 |
| Msa0215680 | Msa0357340 | 0.806498 | 7.989916e-50 | -8.615850e-47 |
| Msa0215680 | Msa0487800 | 0.806639 | 7.461093e-50 | -8.615850e-47 |
| Msa0215680 | Msa0530940 | 0.802463 | 5.544682e-49 | -8.615850e-47 |
| Msa0215680 | Msa0597330 | 0.809594 | 1.751359e-50 | -8.615850e-47 |
| Msa0215680 | Msa0602390 | 0.815342 | 9.712484e-52 | -8.615850e-47 |
| Msa0215680 | Msa0610430 | 0.820803 | 5.654816e-53 | -8.615850e-47 |
| Msa0215680 | Msa0621490 | 0.800925 | 1.146538e-48 | -8.615850e-47 |
| Msa0215680 | Msa0657970 | 0.808585 | 2.881604e-50 | -8.615850e-47 |
| Msa0215680 | Msa0669320 | 0.800825 | 1.201751e-48 | -8.615850e-47 |
| Msa0215680 | Msa0681270 | 0.812184 | 4.815738e-51 | -8.615850e-47 |
| Msa0215680 | Msa0691380 | 0.809090 | 2.247027e-50 | -8.615850e-47 |
| Msa0215680 | Msa0692950 | 0.811669 | 6.237769e-51 | -8.615850e-47 |
| Msa0215680 | Msa0743720 | 0.833820 | 4.280926e-56 | -8.615850e-47 |
| Msa0215680 | Msa0796700 | 0.809581 | 1.762821e-50 | -8.615850e-47 |
| Msa0215680 | Msa0822870 | 0.803817 | 2.908636e-49 | -8.615850e-47 |
| Msa0215680 | Msa0824680 | 0.801976 | 6.981385e-49 | -8.615850e-47 |
| Msa0215680 | Msa0844570 | 0.804058 | 2.592011e-49 | -8.615850e-47 |
| Msa0215680 | Msa0880140 | 0.817431 | 3.308840e-52 | -8.615850e-47 |
| Msa0215680 | Msa0947660 | 0.818747 | 1.668285e-52 | -8.615850e-47 |
| Msa0215680 | Msa0959360 | 0.816771 | 4.657745e-52 | -8.615850e-47 |
| Msa0215680 | Msa0969520 | 0.803318 | 3.692041e-49 | -8.615850e-47 |
| Msa0215680 | Msa0976670 | 0.814103 | 1.826624e-51 | -8.615850e-47 |
| Msa0215680 | Msa0993290 | 0.825641 | 4.196179e-54 | -8.615850e-47 |
| Msa0215680 | Msa0993600 | 0.824595 | 7.414681e-54 | -8.615850e-47 |
| Msa0215680 | Msa1014540 | 0.839813 | 1.265705e-57 | -8.615850e-47 |
| Msa0215680 | Msa1075540 | 0.802700 | 4.954979e-49 | -8.615850e-47 |
| Msa0215680 | Msa1082500 | 0.809105 | 2.230401e-50 | -8.615850e-47 |
| Msa0215680 | Msa1104090 | 0.812268 | 4.616940e-51 | -8.615850e-47 |
| Msa0215680 | Msa1124960 | 0.802908 | 4.486749e-49 | -8.615850e-47 |
| Msa0215680 | Msa1204090 | 0.804464 | 2.132947e-49 | -8.615850e-47 |
| Msa0215680 | Msa1242670 | 0.815850 | 7.483291e-52 | -8.615850e-47 |
| Msa0215680 | Msa1244250 | 0.810781 | 9.715578e-51 | -8.615850e-47 |
| Msa0215680 | Msa1253020 | 0.810422 | 1.161600e-50 | -8.615850e-47 |
| Msa0215680 | Msa1269230 | 0.813620 | 2.334737e-51 | -8.615850e-47 |
| Msa0215680 | Msa1277660 | 0.814896 | 1.219799e-51 | -8.615850e-47 |
| Msa0215680 | Msa1284680 | 0.801656 | 8.123579e-49 | -8.615850e-47 |
| Msa0215680 | Msa1287460 | 0.808906 | 2.460073e-50 | -8.615850e-47 |
| Msa0215680 | Msa1327680 | 0.803221 | 3.866426e-49 | -8.615850e-47 |
| Msa0215680 | Msa1336670 | 0.815038 | 1.134381e-51 | -8.615850e-47 |
| Msa0215680 | Msa1342840 | 0.800093 | 1.694401e-48 | -8.615850e-47 |
| Msa0215680 | Msa1359040 | 0.810712 | 1.005835e-50 | -8.615850e-47 |
| Msa0215680 | Msa1429150 | 0.801648 | 8.153969e-49 | -8.615850e-47 |
| Msa0215680 | Msa1466540 | 0.811384 | 7.191910e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0215680 | MtrunA17_Chr1g0163181 | 73.068 | 453 | 90 | 5 | 45 | 482 | 3 | 438 | 0.0 | 656 |
| Msa0215680 | MtrunA17_Chr1g0163201 | 70.629 | 429 | 69 | 5 | 62 | 480 | 18 | 399 | 0.0 | 561 |
| Msa0215680 | MtrunA17_Chr1g0163251 | 51.831 | 355 | 120 | 4 | 50 | 387 | 8 | 328 | 4.41e-112 | 337 |
| Msa0215680 | MtrunA17_Chr1g0163251 | 58.824 | 51 | 21 | 0 | 1 | 51 | 243 | 293 | 2.11e-11 | 65.5 |
| Msa0215680 | MtrunA17_Chr1g0163151 | 66.135 | 251 | 53 | 2 | 227 | 474 | 1 | 222 | 4.53e-111 | 327 |
| Msa0215680 | MtrunA17_Chr1g0163151 | 32.593 | 135 | 74 | 4 | 3 | 124 | 79 | 209 | 5.36e-11 | 62.4 |
| Msa0215680 | MtrunA17_Chr1g0163111 | 65.476 | 252 | 62 | 5 | 227 | 475 | 1 | 230 | 2.38e-105 | 313 |
| Msa0215680 | MtrunA17_Chr1g0163231 | 44.872 | 312 | 125 | 8 | 45 | 342 | 3 | 281 | 4.87e-78 | 246 |
| Msa0215680 | MtrunA17_Chr1g0163261 | 43.564 | 303 | 134 | 4 | 56 | 349 | 18 | 292 | 7.95e-78 | 245 |
| Msa0215680 | MtrunA17_Chr1g0163191 | 73.596 | 178 | 27 | 2 | 44 | 221 | 2 | 159 | 1.34e-74 | 232 |
| Msa0215680 | MtrunA17_Chr1g0171611 | 44.409 | 313 | 113 | 8 | 45 | 342 | 3 | 269 | 1.44e-73 | 234 |
| Msa0215680 | MtrunA17_Chr1g0163241 | 59.091 | 176 | 36 | 3 | 44 | 218 | 8 | 148 | 2.24e-57 | 187 |
| Msa0215680 | MtrunA17_Chr6g0476171 | 34.191 | 272 | 132 | 6 | 220 | 473 | 3 | 245 | 4.61e-41 | 147 |
| Msa0215680 | MtrunA17_Chr6g0476171 | 45.600 | 125 | 50 | 5 | 1 | 111 | 98 | 218 | 3.42e-19 | 87.0 |
| Msa0215680 | MtrunA17_Chr1g0208771 | 27.155 | 464 | 266 | 15 | 62 | 472 | 12 | 456 | 3.69e-38 | 145 |
| Msa0215680 | MtrunA17_Chr1g0162151 | 35.458 | 251 | 110 | 6 | 227 | 471 | 1 | 205 | 2.16e-37 | 136 |
| Msa0215680 | MtrunA17_Chr1g0163131 | 32.990 | 291 | 177 | 9 | 56 | 339 | 27 | 306 | 1.21e-36 | 137 |
| Msa0215680 | MtrunA17_Chr1g0163131 | 37.500 | 160 | 83 | 6 | 331 | 475 | 151 | 308 | 2.12e-20 | 91.7 |
| Msa0215680 | MtrunA17_Chr8g0390841 | 25.553 | 497 | 288 | 17 | 45 | 472 | 33 | 516 | 1.27e-36 | 141 |
| Msa0215680 | MtrunA17_Chr7g0233561 | 31.988 | 322 | 180 | 11 | 51 | 350 | 18 | 322 | 2.65e-34 | 131 |
| Msa0215680 | MtrunA17_Chr3g0131891 | 31.419 | 296 | 172 | 9 | 56 | 340 | 28 | 303 | 5.09e-32 | 125 |
| Msa0215680 | MtrunA17_Chr1g0163091 | 42.424 | 132 | 71 | 1 | 227 | 353 | 1 | 132 | 7.25e-31 | 117 |
| Msa0215680 | MtrunA17_Chr7g0233541 | 31.959 | 291 | 173 | 9 | 63 | 340 | 2 | 280 | 1.41e-30 | 120 |
| Msa0215680 | MtrunA17_Chr7g0233521 | 32.056 | 287 | 161 | 10 | 63 | 340 | 2 | 263 | 3.36e-30 | 119 |
| Msa0215680 | MtrunA17_Chr1g0163101 | 48.246 | 114 | 56 | 2 | 56 | 169 | 26 | 136 | 2.70e-28 | 110 |
| Msa0215680 | MtrunA17_Chr7g0233531 | 32.867 | 286 | 160 | 10 | 63 | 340 | 2 | 263 | 7.40e-27 | 109 |
| Msa0215680 | MtrunA17_Chr3g0103171 | 27.586 | 290 | 167 | 10 | 62 | 338 | 5 | 264 | 3.30e-25 | 104 |
| Msa0215680 | MtrunA17_Chr1g0162161 | 42.727 | 110 | 60 | 2 | 63 | 172 | 4 | 110 | 7.32e-25 | 100 |
| Msa0215680 | MtrunA17_Chr1g0163071 | 23.780 | 328 | 182 | 8 | 63 | 352 | 2 | 299 | 8.30e-25 | 104 |
| Msa0215680 | MtrunA17_Chr1g0163121 | 45.536 | 112 | 58 | 2 | 61 | 172 | 9 | 117 | 1.15e-24 | 99.4 |
| Msa0215680 | MtrunA17_Chr3g0103181 | 25.256 | 293 | 188 | 8 | 51 | 338 | 12 | 278 | 6.09e-24 | 101 |
| Msa0215680 | MtrunA17_Chr4g0067431 | 27.362 | 307 | 193 | 9 | 51 | 338 | 15 | 310 | 2.43e-23 | 100 |
| Msa0215680 | MtrunA17_Chr6g0476181 | 41.600 | 125 | 66 | 3 | 63 | 186 | 2 | 120 | 4.08e-23 | 95.9 |
| Msa0215680 | MtrunA17_Chr1g0163081 | 40.909 | 110 | 62 | 2 | 63 | 172 | 6 | 112 | 2.13e-22 | 93.2 |
| Msa0215680 | MtrunA17_Chr1g0163221 | 28.477 | 302 | 181 | 9 | 48 | 338 | 12 | 289 | 1.45e-21 | 95.9 |
| Msa0215680 | MtrunA17_Chr7g0233571 | 31.163 | 215 | 133 | 6 | 51 | 257 | 10 | 217 | 7.24e-21 | 91.3 |
| Msa0215680 | MtrunA17_Chr3g0103151 | 37.815 | 119 | 68 | 3 | 51 | 165 | 12 | 128 | 1.07e-19 | 86.3 |
| Msa0215680 | MtrunA17_Chr1g0163141 | 42.000 | 100 | 57 | 1 | 59 | 158 | 7 | 105 | 2.17e-19 | 85.9 |
| Msa0215680 | MtrunA17_Chr3g0103191 | 31.548 | 168 | 105 | 5 | 51 | 210 | 12 | 177 | 9.85e-19 | 85.9 |
| Msa0215680 | MtrunA17_Chr5g0419201 | 34.074 | 135 | 82 | 2 | 56 | 183 | 25 | 159 | 5.71e-18 | 82.0 |
| Msa0215680 | MtrunA17_Chr1g0163161 | 42.105 | 95 | 52 | 2 | 75 | 169 | 1 | 92 | 1.06e-17 | 79.7 |
| Msa0215680 | MtrunA17_Chr6g0467351 | 35.000 | 120 | 70 | 3 | 55 | 166 | 23 | 142 | 5.71e-15 | 74.3 |
| Msa0215680 | MtrunA17_Chr1g0154041 | 23.975 | 317 | 190 | 10 | 59 | 328 | 27 | 339 | 1.84e-14 | 75.9 |
| Msa0215680 | MtrunA17_Chr3g0077411 | 20.760 | 342 | 223 | 8 | 4 | 338 | 215 | 515 | 1.42e-12 | 69.7 |
| Msa0215680 | MtrunA17_Chr3g0077461 | 25.907 | 193 | 133 | 4 | 1 | 187 | 187 | 375 | 1.88e-12 | 69.3 |
| Msa0215680 | MtrunA17_Chr4g0033961 | 36.364 | 99 | 57 | 2 | 51 | 143 | 6 | 104 | 2.68e-12 | 68.6 |
| Msa0215680 | MtrunA17_Chr1g0162441 | 33.945 | 109 | 65 | 3 | 51 | 152 | 7 | 115 | 1.32e-11 | 66.6 |
| Msa0215680 | MtrunA17_Chr5g0419211 | 32.632 | 95 | 63 | 1 | 261 | 354 | 10 | 104 | 8.17e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0215680 | AT3G18990.2 | 26.113 | 337 | 202 | 11 | 51 | 343 | 6 | 339 | 8.97e-22 | 97.1 |
| Msa0215680 | AT3G18990.1 | 26.347 | 334 | 199 | 11 | 51 | 340 | 6 | 336 | 1.23e-21 | 96.3 |
Find 101 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTAGCTGTGCTTCTTTA+AGG | 0.068553 | 2_1:+61087158 | Msa0215680:CDS |
| TTTGCAAAGCCTTTCAAATA+TGG | 0.180110 | 2_1:+61084949 | Msa0215680:CDS |
| AAATATCTTGGAGTTGAAAA+TGG | 0.201158 | 2_1:+61086959 | Msa0215680:CDS |
| ATAAATATCCAGCACTTTAA+AGG | 0.218530 | 2_1:-61087208 | None:intergenic |
| TATTTCTCCACATATTTCTT+TGG | 0.248757 | 2_1:-61084814 | None:intergenic |
| ATGCTGACACAATACTTCTT+AGG | 0.258399 | 2_1:-61087286 | None:intergenic |
| CATTAACATCTTCAGATCTT+AGG | 0.260861 | 2_1:-61085657 | None:intergenic |
| TTCATCAACTGATTTGATAT+TGG | 0.261684 | 2_1:-61085055 | None:intergenic |
| AGAAATATGTGGAGAAATAT+TGG | 0.281812 | 2_1:+61084818 | Msa0215680:CDS |
| TGGAGAGTAATGGTGATATT+TGG | 0.287546 | 2_1:+61084905 | Msa0215680:CDS |
| TTAATGGAACTACAACAATA+AGG | 0.294713 | 2_1:+61085850 | Msa0215680:CDS |
| GTGTTTGATGTTTCAATTGT+AGG | 0.300485 | 2_1:+61087128 | Msa0215680:CDS |
| CTCTTAACTTTCAAATTCAT+TGG | 0.314459 | 2_1:+61084976 | Msa0215680:CDS |
| TTAGGAAACTTAAGGAATAT+AGG | 0.318222 | 2_1:-61084856 | None:intergenic |
| ATAGTAACATTGAATGAAAT+TGG | 0.319993 | 2_1:-61086020 | None:intergenic |
| AGGCATGGTTCCTTTGTAGC+TGG | 0.320210 | 2_1:-61083535 | None:intergenic |
| AGAAAACCTAGTGATTTCTT+TGG | 0.323706 | 2_1:-61086068 | None:intergenic |
| AGAGCAATACCCTTTACTTT+TGG | 0.331691 | 2_1:-61086259 | None:intergenic |
| CCTAGTGATTTCTTTGGCTT+TGG | 0.332979 | 2_1:-61086062 | None:intergenic |
| AGAAGTATTGTGTCAGCATT+TGG | 0.339148 | 2_1:+61087290 | Msa0215680:three_prime_UTR |
| CTGGTCCTTTGAGTTTGCTT+TGG | 0.341746 | 2_1:-61085240 | None:intergenic |
| TAGGAAACTTAAGGAATATA+GGG | 0.346499 | 2_1:-61084855 | None:intergenic |
| TGTTCTCTTGAAAACTCATT+TGG | 0.346666 | 2_1:-61085816 | None:intergenic |
| AATATCTTGGAGTTGAAAAT+GGG | 0.359463 | 2_1:+61086960 | Msa0215680:CDS |
| TGAAACAGAGGATACCTAAT+TGG | 0.359645 | 2_1:+61083284 | Msa0215680:intron |
| CGACGTTAAATTTCGATGAA+TGG | 0.363870 | 2_1:+61083386 | Msa0215680:five_prime_UTR |
| TAATGGAACTACAACAATAA+GGG | 0.368234 | 2_1:+61085851 | Msa0215680:CDS |
| TGCTTTGCCCTTTAAAGTGC+TGG | 0.375844 | 2_1:+61087200 | Msa0215680:three_prime_UTR |
| ACTTTCTTCACCTTCTTCAA+TGG | 0.380996 | 2_1:-61085178 | None:intergenic |
| TCATGATTCATAAACTCCTT+TGG | 0.383485 | 2_1:-61086936 | None:intergenic |
| TATGAATCATGAAAATATCT+TGG | 0.394934 | 2_1:+61086947 | Msa0215680:CDS |
| CAACACCGTTAGGAAACTTA+AGG | 0.403140 | 2_1:-61084864 | None:intergenic |
| ATAGTTTATTTCTAAAGTAT+TGG | 0.406626 | 2_1:-61085031 | None:intergenic |
| CCTTAAAGAAGCACAGCTAA+TGG | 0.407485 | 2_1:-61087158 | None:intergenic |
| AGCAGCTCTGCAAGAGGCTA+AGG | 0.411495 | 2_1:+61082980 | Msa0215680:five_prime_UTR |
| GTGGTGGATGGAAAATATTC+AGG | 0.420444 | 2_1:+61085940 | Msa0215680:CDS |
| TAAATATCCAGCACTTTAAA+GGG | 0.428813 | 2_1:-61087207 | None:intergenic |
| TTTAGGTTCTATGATATTTG+TGG | 0.430149 | 2_1:+61087350 | Msa0215680:intron |
| AAAGAATGCAAAGTGGAGAT+TGG | 0.431700 | 2_1:+61087065 | Msa0215680:CDS |
| AGCTACAAAGGAACCATGCC+TGG | 0.433161 | 2_1:+61083537 | Msa0215680:CDS |
| AAATATTATGAGAGTCTTTG+TGG | 0.437608 | 2_1:+61087008 | Msa0215680:CDS |
| ATAGTAATTGTGAATGAAAG+TGG | 0.438268 | 2_1:-61083508 | None:intergenic |
| AGTCTTTGTGGCTGTAAGTT+CGG | 0.438865 | 2_1:+61087020 | Msa0215680:CDS |
| CAAACTCAAAGGACCAGAAA+TGG | 0.451853 | 2_1:+61085246 | Msa0215680:CDS |
| GGCATGGTTCCTTTGTAGCT+GGG | 0.456521 | 2_1:-61083534 | None:intergenic |
| GATATTTGTTCTGTGATTGT+TGG | 0.466702 | 2_1:+61087312 | Msa0215680:three_prime_UTR |
| TTAACTTTCAAATTCATTGG+TGG | 0.475675 | 2_1:+61084979 | Msa0215680:CDS |
| AGGAGCCATCCAAAAGTAAA+GGG | 0.477165 | 2_1:+61086250 | Msa0215680:CDS |
| TAGGAGCCATCCAAAAGTAA+AGG | 0.478853 | 2_1:+61086249 | Msa0215680:CDS |
| CAAAGTGGCCATGGTAAAGA+AGG | 0.488314 | 2_1:+61085624 | Msa0215680:CDS |
| TGAAAATGGGGAGAAAATCA+TGG | 0.492046 | 2_1:+61086973 | Msa0215680:CDS |
| TGACATTATAACTTCAAAAG+AGG | 0.495408 | 2_1:-61085686 | None:intergenic |
| TGTGGCTGTAAGTTCGGTAA+AGG | 0.504977 | 2_1:+61087026 | Msa0215680:CDS |
| CCATGCCTGGAGCAGTTTCA+AGG | 0.511461 | 2_1:+61083550 | Msa0215680:CDS |
| GCTGTAAGTTCGGTAAAGGT+TGG | 0.518813 | 2_1:+61087030 | Msa0215680:CDS |
| AAATACCTTGAAACTGCTCC+AGG | 0.519839 | 2_1:-61083555 | None:intergenic |
| AAGAGATATCCATATTTGAA+AGG | 0.520085 | 2_1:-61084958 | None:intergenic |
| TGGTTGGAAGTCGTTTGTGC+AGG | 0.521812 | 2_1:+61083432 | Msa0215680:CDS |
| AATGGCAAGAGAAAATTCTC+AGG | 0.523324 | 2_1:+61085264 | Msa0215680:CDS |
| GACATTATAACTTCAAAAGA+GGG | 0.525934 | 2_1:-61085685 | None:intergenic |
| AAGACATTGGAGGAACATCT+AGG | 0.526190 | 2_1:+61086230 | Msa0215680:CDS |
| GTGACTGTTACTGAAGTGTT+AGG | 0.532912 | 2_1:+61082889 | None:intergenic |
| GAAGGAGCACAAGACATTCA+AGG | 0.537945 | 2_1:+61086685 | Msa0215680:CDS |
| AATATCAAATCAGTTGATGA+AGG | 0.540855 | 2_1:+61085057 | Msa0215680:CDS |
| GATGAGGAAGCCATTGAAGA+AGG | 0.544836 | 2_1:+61085168 | Msa0215680:CDS |
| GCAAGAGGCTAAGGCTCTGA+TGG | 0.545145 | 2_1:+61082989 | Msa0215680:five_prime_UTR |
| CCAAAGCCAAAGAAATCACT+AGG | 0.556666 | 2_1:+61086062 | Msa0215680:CDS |
| GTAAATTTGAGATGATTCGA+CGG | 0.557247 | 2_1:+61085994 | Msa0215680:CDS |
| GTTGTAAAGAAGCAAGACAT+TGG | 0.558494 | 2_1:+61086217 | Msa0215680:CDS |
| CAATAAGGGTTGGTAATGAA+AGG | 0.558627 | 2_1:+61085865 | Msa0215680:CDS |
| TCCAGAAGGTCGTGATGTGA+AGG | 0.558641 | 2_1:+61086667 | Msa0215680:intron |
| AAGTGATGAATCAAGTGATG+AGG | 0.567308 | 2_1:+61085152 | Msa0215680:CDS |
| TACATGAAAGAGTTGTTGCA+AGG | 0.571480 | 2_1:+61083319 | Msa0215680:five_prime_UTR |
| AGGTAGTAACAAAGTGGCCA+TGG | 0.577811 | 2_1:+61085615 | Msa0215680:intron |
| CCTTGAAACTGCTCCAGGCA+TGG | 0.579128 | 2_1:-61083550 | None:intergenic |
| ACTTACAAAGAAATAGCCAT+TGG | 0.583056 | 2_1:-61085719 | None:intergenic |
| AATATTGTATGGGTGGTGGA+TGG | 0.587908 | 2_1:+61085928 | Msa0215680:CDS |
| GGTGCTGAAGACACAGAAGA+AGG | 0.588176 | 2_1:+61085078 | Msa0215680:CDS |
| ATATTCCTTAAGTTTCCTAA+CGG | 0.590322 | 2_1:+61084859 | Msa0215680:CDS |
| GAGTAATGAGAGTTCAGATG+AGG | 0.591415 | 2_1:+61085209 | Msa0215680:CDS |
| GAGGGTTCCAAAGAAATATG+TGG | 0.594786 | 2_1:+61084807 | Msa0215680:intron |
| AAGAGTAGCAGCTCTGCAAG+AGG | 0.595627 | 2_1:+61082974 | Msa0215680:five_prime_UTR |
| GGAACTACAACAATAAGGGT+TGG | 0.596420 | 2_1:+61085855 | Msa0215680:CDS |
| GTATCTGCAGTGTGTACCAA+AGG | 0.598126 | 2_1:+61086920 | Msa0215680:intron |
| GTAAAGAAGCAAGACATTGG+AGG | 0.602206 | 2_1:+61086220 | Msa0215680:CDS |
| ATGTCACAATCTTACGCCAA+TGG | 0.605717 | 2_1:+61085703 | Msa0215680:CDS |
| GGTTGGTAATGAAAGGAGTG+TGG | 0.605745 | 2_1:+61085872 | Msa0215680:CDS |
| TACTATTATCCCAGCTACAA+AGG | 0.605894 | 2_1:+61083525 | Msa0215680:CDS |
| ACATGAAAGAGTTGTTGCAA+GGG | 0.610644 | 2_1:+61083320 | Msa0215680:five_prime_UTR |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 2_1:+61084823 | Msa0215680:CDS |
| ATTCATGAAAGAATGCAAAG+TGG | 0.625279 | 2_1:+61087058 | Msa0215680:CDS |
| CAGGAACATAACTTGCAAGC+TGG | 0.628096 | 2_1:+61083451 | Msa0215680:CDS |
| TTTCGTGAAGAACAAAACCC+CGG | 0.628138 | 2_1:+61086709 | Msa0215680:CDS |
| ATATCTTGGAGTTGAAAATG+GGG | 0.639227 | 2_1:+61086961 | Msa0215680:CDS |
| AACGATTAGAAATGTTGATG+AGG | 0.639795 | 2_1:+61083348 | Msa0215680:five_prime_UTR |
| AAATACCAAAGCAAACTCAA+AGG | 0.654830 | 2_1:+61085235 | Msa0215680:CDS |
| GGAGTGTGGAAGTGAGTGTG+AGG | 0.659449 | 2_1:+61085886 | Msa0215680:CDS |
| TAGCTTTAAGCATTGCTCAG+AGG | 0.663605 | 2_1:+61082942 | Msa0215680:five_prime_UTR |
| CTTGGCAGGTAGTAACAAAG+TGG | 0.671173 | 2_1:+61085609 | Msa0215680:intron |
| GAAGTGTTAGGACCAGACAA+AGG | 0.713261 | 2_1:+61082901 | Msa0215680:five_prime_UTR |
| ATGTTGATGAGGACATGACA+TGG | 0.737782 | 2_1:+61083359 | Msa0215680:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAAAATGTGATTTTTTT+TGG | + | chr2_1:61085467-61085486 | Msa0215680:intron | 10.0% |
| !! | AACCAAATACTTATATATTA+TGG | - | chr2_1:61083714-61083733 | None:intergenic | 15.0% |
| !!! | ATTTAATCAATTTTGTTTGT+TGG | + | chr2_1:61083992-61084011 | Msa0215680:intron | 15.0% |
| !!! | ATTTTCTATCTAATTTTTTC+TGG | - | chr2_1:61084437-61084456 | None:intergenic | 15.0% |
| !!! | TAAAGATATTTTTTGTAGTA+TGG | - | chr2_1:61084514-61084533 | None:intergenic | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | + | chr2_1:61084882-61084901 | Msa0215680:CDS | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | + | chr2_1:61084920-61084939 | Msa0215680:CDS | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | + | chr2_1:61084921-61084940 | Msa0215680:CDS | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | + | chr2_1:61085006-61085025 | Msa0215680:CDS | 15.0% |
| !!! | ATAGTTTATTTCTAAAGTAT+TGG | - | chr2_1:61085034-61085053 | None:intergenic | 15.0% |
| !!! | TTATTTTAAGAGTTATTGAA+TGG | + | chr2_1:61085366-61085385 | Msa0215680:intron | 15.0% |
| !!! | TTCTTTCTTTCTTTTTTATT+TGG | + | chr2_1:61086087-61086106 | Msa0215680:intron | 15.0% |
| !!! | TTTAGATTTTATTATTGTAG+AGG | + | chr2_1:61086297-61086316 | Msa0215680:intron | 15.0% |
| !!! | TTAGATTTTATTATTGTAGA+GGG | + | chr2_1:61086298-61086317 | Msa0215680:intron | 15.0% |
| !! | AAACTTATGAATGATTTATA+AGG | + | chr2_1:61086388-61086407 | Msa0215680:intron | 15.0% |
| !! | TAAAAAATATTTCAATTCAC+AGG | - | chr2_1:61086464-61086483 | None:intergenic | 15.0% |
| !! | ATTTGAATAGATTTATAGTT+AGG | - | chr2_1:61086581-61086600 | None:intergenic | 15.0% |
| !!! | TCAAATGTATCTAAATTTTT+TGG | + | chr2_1:61086595-61086614 | Msa0215680:intron | 15.0% |
| !!! | CAAATGTATCTAAATTTTTT+GGG | + | chr2_1:61086596-61086615 | Msa0215680:intron | 15.0% |
| !! | TTTATGTAATTATATCTTAC+CGG | - | chr2_1:61086731-61086750 | None:intergenic | 15.0% |
| !! | ATTCATTAATCAAACGTATA+AGG | - | chr2_1:61083232-61083251 | None:intergenic | 20.0% |
| !!! | TATTCTTTTGAAATCCAATT+AGG | - | chr2_1:61083301-61083320 | None:intergenic | 20.0% |
| !!! | TCTTTCGTTATTATTGTTTT+TGG | + | chr2_1:61083577-61083596 | Msa0215680:intron | 20.0% |
| !! | CACCATAATATATAAGTATT+TGG | + | chr2_1:61083709-61083728 | Msa0215680:intron | 20.0% |
| !! | ATTATGCATGTATATATTAC+AGG | + | chr2_1:61083775-61083794 | Msa0215680:intron | 20.0% |
| !! | TTATGCATGTATATATTACA+GGG | + | chr2_1:61083776-61083795 | Msa0215680:intron | 20.0% |
| !!! | AATATATTCCAGATTTTCAT+AGG | + | chr2_1:61084642-61084661 | Msa0215680:intron | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | + | chr2_1:61084881-61084900 | Msa0215680:CDS | 20.0% |
| !!! | AAAATGTGATTTTTTTTGGT+AGG | + | chr2_1:61085471-61085490 | Msa0215680:intron | 20.0% |
| !! | ATAGTAACATTGAATGAAAT+TGG | - | chr2_1:61086023-61086042 | None:intergenic | 20.0% |
| !! | TTATGTAATTATATCTTACC+GGG | - | chr2_1:61086730-61086749 | None:intergenic | 20.0% |
| !! | AGGTTAAAAGTTAATAGAAT+GGG | - | chr2_1:61086843-61086862 | None:intergenic | 20.0% |
| !! | TACAAACAAAAATATTAGTG+AGG | - | chr2_1:61086903-61086922 | None:intergenic | 20.0% |
| !! | TATGAATCATGAAAATATCT+TGG | + | chr2_1:61086947-61086966 | Msa0215680:CDS | 20.0% |
| !!! | ACAATTTTAAGCAATGTATT+TGG | + | chr2_1:61087235-61087254 | Msa0215680:three_prime_UTR | 20.0% |
| !!! | TATGTTGTTTTAGTTGAGTT+TGG | + | chr2_1:61083168-61083187 | Msa0215680:intron | 25.0% |
| ! | ACCTTATTACAACATATAAG+CGG | - | chr2_1:61083204-61083223 | None:intergenic | 25.0% |
| ! | ATAGTAATTGTGAATGAAAG+TGG | - | chr2_1:61083511-61083530 | None:intergenic | 25.0% |
| ! | TCAATCATATATGTTCATCT+TGG | + | chr2_1:61083680-61083699 | Msa0215680:intron | 25.0% |
| !!! | GGTTTTAGTCATTCTAATAT+TGG | + | chr2_1:61083730-61083749 | Msa0215680:intron | 25.0% |
| !!! | AGTTTTTTTCCAAGTACTAA+AGG | + | chr2_1:61083883-61083902 | Msa0215680:intron | 25.0% |
| ! | TATATATCACCTTTAGTACT+TGG | - | chr2_1:61083895-61083914 | None:intergenic | 25.0% |
| !! | ACTTTATGATGACATAGTTT+TGG | - | chr2_1:61084042-61084061 | None:intergenic | 25.0% |
| !!! | TTTTTACATAAGGTACTGTA+GGG | - | chr2_1:61084250-61084269 | None:intergenic | 25.0% |
| !!! | ATTTTTACATAAGGTACTGT+AGG | - | chr2_1:61084251-61084270 | None:intergenic | 25.0% |
| ! | TACAGTACCTTATGTAAAAA+TGG | + | chr2_1:61084250-61084269 | Msa0215680:intron | 25.0% |
| !!! | ATATCTGCCATTTTTACATA+AGG | - | chr2_1:61084260-61084279 | None:intergenic | 25.0% |
| ! | TGTAAAAATGGCAGATATTA+AGG | + | chr2_1:61084262-61084281 | Msa0215680:intron | 25.0% |
| ! | GTAAAAATGGCAGATATTAA+GGG | + | chr2_1:61084263-61084282 | Msa0215680:intron | 25.0% |
| ! | GCATACATTAAAAAACACAA+TGG | - | chr2_1:61084295-61084314 | None:intergenic | 25.0% |
| !!! | CTTTTTTATCGTGTCATAAA+TGG | + | chr2_1:61084381-61084400 | Msa0215680:intron | 25.0% |
| ! | TATTTCTCCACATATTTCTT+TGG | - | chr2_1:61084817-61084836 | None:intergenic | 25.0% |
| ! | AGAAATATGTGGAGAAATAT+TGG | + | chr2_1:61084818-61084837 | Msa0215680:CDS | 25.0% |
| ! | TAGGAAACTTAAGGAATATA+GGG | - | chr2_1:61084858-61084877 | None:intergenic | 25.0% |
| ! | TTAGGAAACTTAAGGAATAT+AGG | - | chr2_1:61084859-61084878 | None:intergenic | 25.0% |
| ! | ATATTCCTTAAGTTTCCTAA+CGG | + | chr2_1:61084859-61084878 | Msa0215680:CDS | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | + | chr2_1:61084885-61084904 | Msa0215680:CDS | 25.0% |
| ! | AAGAGATATCCATATTTGAA+AGG | - | chr2_1:61084961-61084980 | None:intergenic | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | + | chr2_1:61084976-61084995 | Msa0215680:CDS | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | + | chr2_1:61084979-61084998 | Msa0215680:CDS | 25.0% |
| !!! | TTCATCAACTGATTTGATAT+TGG | - | chr2_1:61085058-61085077 | None:intergenic | 25.0% |
| !!! | AATATCAAATCAGTTGATGA+AGG | + | chr2_1:61085057-61085076 | Msa0215680:CDS | 25.0% |
| ! | AAATAGTTAATGCCTAAACT+TGG | + | chr2_1:61085591-61085610 | Msa0215680:intron | 25.0% |
| ! | GACATTATAACTTCAAAAGA+GGG | - | chr2_1:61085688-61085707 | None:intergenic | 25.0% |
| ! | TGACATTATAACTTCAAAAG+AGG | - | chr2_1:61085689-61085708 | None:intergenic | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+TGG | + | chr2_1:61085834-61085853 | Msa0215680:CDS | 25.0% |
| ! | TTAATGGAACTACAACAATA+AGG | + | chr2_1:61085850-61085869 | Msa0215680:CDS | 25.0% |
| ! | TAATGGAACTACAACAATAA+GGG | + | chr2_1:61085851-61085870 | Msa0215680:CDS | 25.0% |
| ! | TACCCAGAAAAAATATTGTA+TGG | + | chr2_1:61085917-61085936 | Msa0215680:CDS | 25.0% |
| ! | ACCCAGAAAAAATATTGTAT+GGG | + | chr2_1:61085918-61085937 | Msa0215680:CDS | 25.0% |
| !!! | ACCCATACAATATTTTTTCT+GGG | - | chr2_1:61085922-61085941 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTTATCCATGACA+AGG | + | chr2_1:61086163-61086182 | Msa0215680:intron | 25.0% |
| ! | CATGACAAGGTTATAAAAAA+GGG | + | chr2_1:61086176-61086195 | Msa0215680:intron | 25.0% |
| ! | ATGACAAGGTTATAAAAAAG+GGG | + | chr2_1:61086177-61086196 | Msa0215680:intron | 25.0% |
| ! | TGAATGATTTATAAGGTTCT+TGG | + | chr2_1:61086395-61086414 | Msa0215680:intron | 25.0% |
| ! | TAAAAGAAGAAACTGAAAAC+TGG | - | chr2_1:61086550-61086569 | None:intergenic | 25.0% |
| ! | TATGTAATTATATCTTACCG+GGG | - | chr2_1:61086729-61086748 | None:intergenic | 25.0% |
| ! | ATTGAACGAAAGTTAGTTAT+GGG | - | chr2_1:61086784-61086803 | None:intergenic | 25.0% |
| ! | AATTGAACGAAAGTTAGTTA+TGG | - | chr2_1:61086785-61086804 | None:intergenic | 25.0% |
| ! | GAGGTTAAAAGTTAATAGAA+TGG | - | chr2_1:61086844-61086863 | None:intergenic | 25.0% |
| !! | CTTTTAACCTCTAATGTATA+AGG | + | chr2_1:61086853-61086872 | Msa0215680:intron | 25.0% |
| ! | AAATATCTTGGAGTTGAAAA+TGG | + | chr2_1:61086959-61086978 | Msa0215680:CDS | 25.0% |
| ! | AATATCTTGGAGTTGAAAAT+GGG | + | chr2_1:61086960-61086979 | Msa0215680:CDS | 25.0% |
| ! | AAATATTATGAGAGTCTTTG+TGG | + | chr2_1:61087008-61087027 | Msa0215680:CDS | 25.0% |
| ! | TAAATATCCAGCACTTTAAA+GGG | - | chr2_1:61087210-61087229 | None:intergenic | 25.0% |
| ! | ATAAATATCCAGCACTTTAA+AGG | - | chr2_1:61087211-61087230 | None:intergenic | 25.0% |
| !! | TTTAGGTTCTATGATATTTG+TGG | + | chr2_1:61087350-61087369 | Msa0215680:intron | 25.0% |
| ! | TTCTGAATTTTTCCTTTGTC+TGG | - | chr2_1:61082916-61082935 | None:intergenic | 30.0% |
| CATGACAGTCAAACATATTT+GGG | - | chr2_1:61083073-61083092 | None:intergenic | 30.0% | |
| TCATGACAGTCAAACATATT+TGG | - | chr2_1:61083074-61083093 | None:intergenic | 30.0% | |
| TATATGTTGTAATAAGGTCC+AGG | + | chr2_1:61083206-61083225 | Msa0215680:intron | 30.0% | |
| AACGATTAGAAATGTTGATG+AGG | + | chr2_1:61083348-61083367 | Msa0215680:five_prime_UTR | 30.0% | |
| !!! | TTTGGCTCAAATCACTTTTT+AGG | - | chr2_1:61084024-61084043 | None:intergenic | 30.0% |
| GAATGAAACATTCAATGACT+CGG | + | chr2_1:61084099-61084118 | Msa0215680:intron | 30.0% | |
| !! | ACAAAACAAATCCACTTTTG+TGG | + | chr2_1:61084169-61084188 | Msa0215680:intron | 30.0% |
| !!! | CTTTTAATTTGCCACAAAAG+TGG | - | chr2_1:61084183-61084202 | None:intergenic | 30.0% |
| !!! | TTTTTCTGGTGTTACTACTT+TGG | - | chr2_1:61084423-61084442 | None:intergenic | 30.0% |
| AAGATGATCCTATGAAAATC+TGG | - | chr2_1:61084653-61084672 | None:intergenic | 30.0% | |
| TTTGAATTTCTTTGTTGCAG+AGG | + | chr2_1:61084788-61084807 | Msa0215680:intron | 30.0% | |
| TTGAATTTCTTTGTTGCAGA+GGG | + | chr2_1:61084789-61084808 | Msa0215680:intron | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | + | chr2_1:61084823-61084842 | Msa0215680:CDS | 30.0% | |
| !!! | ATTTTTTGTTCAACACCGTT+AGG | - | chr2_1:61084877-61084896 | None:intergenic | 30.0% |
| TTTGCAAAGCCTTTCAAATA+TGG | + | chr2_1:61084949-61084968 | Msa0215680:CDS | 30.0% | |
| !! | CATTGGTGGATCATATTTTA+AGG | + | chr2_1:61084993-61085012 | Msa0215680:CDS | 30.0% |
| AAATACCAAAGCAAACTCAA+AGG | + | chr2_1:61085235-61085254 | Msa0215680:CDS | 30.0% | |
| !!! | ATTCTCAGGTTGATCTTTTT+TGG | + | chr2_1:61085278-61085297 | Msa0215680:intron | 30.0% |
| !!! | TTCTCAGGTTGATCTTTTTT+GGG | + | chr2_1:61085279-61085298 | Msa0215680:intron | 30.0% |
| !!! | GATCTTTTTTGGGTAGATTT+AGG | + | chr2_1:61085289-61085308 | Msa0215680:intron | 30.0% |
| ! | AGAGTTATTGAATGGTTTGT+TGG | + | chr2_1:61085374-61085393 | Msa0215680:intron | 30.0% |
| ! | GTTGGAATTTTATGTCTGAA+AGG | + | chr2_1:61085392-61085411 | Msa0215680:intron | 30.0% |
| CATTAACATCTTCAGATCTT+AGG | - | chr2_1:61085660-61085679 | None:intergenic | 30.0% | |
| ACTTACAAAGAAATAGCCAT+TGG | - | chr2_1:61085722-61085741 | None:intergenic | 30.0% | |
| TAAACCATTACTTGAAACAG+TGG | + | chr2_1:61085790-61085809 | Msa0215680:intron | 30.0% | |
| TGTTCTCTTGAAAACTCATT+TGG | - | chr2_1:61085819-61085838 | None:intergenic | 30.0% | |
| !!! | CACCCATACAATATTTTTTC+TGG | - | chr2_1:61085923-61085942 | None:intergenic | 30.0% |
| CAGAAAAAATATTGTATGGG+TGG | + | chr2_1:61085921-61085940 | Msa0215680:CDS | 30.0% | |
| AAAAAATATTGTATGGGTGG+TGG | + | chr2_1:61085924-61085943 | Msa0215680:CDS | 30.0% | |
| ! | GTAAATTTGAGATGATTCGA+CGG | + | chr2_1:61085994-61086013 | Msa0215680:CDS | 30.0% |
| AGAAAACCTAGTGATTTCTT+TGG | - | chr2_1:61086071-61086090 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTATAACCTTGTCA+TGG | - | chr2_1:61086178-61086197 | None:intergenic | 30.0% |
| CCATGACAAGGTTATAAAAA+AGG | + | chr2_1:61086175-61086194 | Msa0215680:intron | 30.0% | |
| ! | AATGGGATTAACTTGACTAA+CGG | - | chr2_1:61086826-61086845 | None:intergenic | 30.0% |
| TTAACCTCTAATGTATAAGG+TGG | + | chr2_1:61086856-61086875 | Msa0215680:intron | 30.0% | |
| TCATGATTCATAAACTCCTT+TGG | - | chr2_1:61086939-61086958 | None:intergenic | 30.0% | |
| ATATCTTGGAGTTGAAAATG+GGG | + | chr2_1:61086961-61086980 | Msa0215680:CDS | 30.0% | |
| ATTCATGAAAGAATGCAAAG+TGG | + | chr2_1:61087058-61087077 | Msa0215680:CDS | 30.0% | |
| GTGTTTGATGTTTCAATTGT+AGG | + | chr2_1:61087128-61087147 | Msa0215680:CDS | 30.0% | |
| GATATTTGTTCTGTGATTGT+TGG | + | chr2_1:61087312-61087331 | Msa0215680:three_prime_UTR | 30.0% | |
| ! | GGTAATGTGCTTTAAACTTT+AGG | + | chr2_1:61087333-61087352 | Msa0215680:intron | 30.0% |
| ATCCAAACTCGTTCCAAAAA+GGG | + | chr2_1:61083031-61083050 | Msa0215680:intron | 35.0% | |
| !! | GCTTTTGATTACACCCTTTT+TGG | - | chr2_1:61083047-61083066 | None:intergenic | 35.0% |
| ATGCAAAGAAGCAAATCAAC+TGG | - | chr2_1:61083147-61083166 | None:intergenic | 35.0% | |
| GCCGCTTATATGTTGTAATA+AGG | + | chr2_1:61083200-61083219 | Msa0215680:intron | 35.0% | |
| TTAATCAAACGTATAAGGCC+TGG | - | chr2_1:61083227-61083246 | None:intergenic | 35.0% | |
| ! | TAAACCATGATCTGAAACAG+AGG | + | chr2_1:61083272-61083291 | Msa0215680:intron | 35.0% |
| TGAAACAGAGGATACCTAAT+TGG | + | chr2_1:61083284-61083303 | Msa0215680:intron | 35.0% | |
| TACATGAAAGAGTTGTTGCA+AGG | + | chr2_1:61083319-61083338 | Msa0215680:five_prime_UTR | 35.0% | |
| ACATGAAAGAGTTGTTGCAA+GGG | + | chr2_1:61083320-61083339 | Msa0215680:five_prime_UTR | 35.0% | |
| CGACGTTAAATTTCGATGAA+TGG | + | chr2_1:61083386-61083405 | Msa0215680:five_prime_UTR | 35.0% | |
| TACTATTATCCCAGCTACAA+AGG | + | chr2_1:61083525-61083544 | Msa0215680:CDS | 35.0% | |
| GTGATGATACACACACAAAT+AGG | + | chr2_1:61084146-61084165 | Msa0215680:intron | 35.0% | |
| ACTTTATTACTGTCCAGTAC+AGG | - | chr2_1:61084479-61084498 | None:intergenic | 35.0% | |
| ACTGGACAGTAATAAAGTCT+TGG | + | chr2_1:61084481-61084500 | Msa0215680:intron | 35.0% | |
| !! | GGTGAAAGATTTTGAGTGTT+AGG | - | chr2_1:61084570-61084589 | None:intergenic | 35.0% |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | + | chr2_1:61084895-61084914 | Msa0215680:CDS | 35.0% |
| TGGAGAGTAATGGTGATATT+TGG | + | chr2_1:61084905-61084924 | Msa0215680:CDS | 35.0% | |
| AAGTGATGAATCAAGTGATG+AGG | + | chr2_1:61085152-61085171 | Msa0215680:CDS | 35.0% | |
| ACTTTCTTCACCTTCTTCAA+TGG | - | chr2_1:61085181-61085200 | None:intergenic | 35.0% | |
| !! | GAATTTTCTCTTGCCATTTC+TGG | - | chr2_1:61085262-61085281 | None:intergenic | 35.0% |
| AATGGCAAGAGAAAATTCTC+AGG | + | chr2_1:61085264-61085283 | Msa0215680:CDS | 35.0% | |
| !! | TTTTCTAGCCTTCTTTACCA+TGG | - | chr2_1:61085635-61085654 | None:intergenic | 35.0% |
| ! | GTATCCACTGTTTCAAGTAA+TGG | - | chr2_1:61085797-61085816 | None:intergenic | 35.0% |
| !! | CAATAAGGGTTGGTAATGAA+AGG | + | chr2_1:61085865-61085884 | Msa0215680:CDS | 35.0% |
| TATAAAAAAGGGGTCTCTTG+TGG | + | chr2_1:61086187-61086206 | Msa0215680:CDS | 35.0% | |
| GTTGTAAAGAAGCAAGACAT+TGG | + | chr2_1:61086217-61086236 | Msa0215680:CDS | 35.0% | |
| !! | CAATACCCTTTACTTTTGGA+TGG | - | chr2_1:61086258-61086277 | None:intergenic | 35.0% |
| ! | AGAGCAATACCCTTTACTTT+TGG | - | chr2_1:61086262-61086281 | None:intergenic | 35.0% |
| TGAAAATGGGGAGAAAATCA+TGG | + | chr2_1:61086973-61086992 | Msa0215680:CDS | 35.0% | |
| AAAGAATGCAAAGTGGAGAT+TGG | + | chr2_1:61087065-61087084 | Msa0215680:CDS | 35.0% | |
| ATGCTGACACAATACTTCTT+AGG | - | chr2_1:61087289-61087308 | None:intergenic | 35.0% | |
| !! | AGAAGTATTGTGTCAGCATT+TGG | + | chr2_1:61087290-61087309 | Msa0215680:three_prime_UTR | 35.0% |
| !! | TAGCTTTAAGCATTGCTCAG+AGG | + | chr2_1:61082942-61082961 | Msa0215680:five_prime_UTR | 40.0% |
| CATCCAAACTCGTTCCAAAA+AGG | + | chr2_1:61083030-61083049 | Msa0215680:intron | 40.0% | |
| GTATCCTCTGTTTCAGATCA+TGG | - | chr2_1:61083279-61083298 | None:intergenic | 40.0% | |
| ! | ATGTTGATGAGGACATGACA+TGG | + | chr2_1:61083359-61083378 | Msa0215680:five_prime_UTR | 40.0% |
| !! | TGAAATTTTGCTATGCGAGC+TGG | + | chr2_1:61083412-61083431 | Msa0215680:exon | 40.0% |
| AAATACCTTGAAACTGCTCC+AGG | - | chr2_1:61083558-61083577 | None:intergenic | 40.0% | |
| !! | CAAGCACTGAAACAGAACAA+TGG | + | chr2_1:61083825-61083844 | Msa0215680:intron | 40.0% |
| CATTGTGAGCTCATGTGAAA+TGG | + | chr2_1:61084223-61084242 | Msa0215680:intron | 40.0% | |
| !! | TGGTGTTACTACTTTGGTGT+TGG | - | chr2_1:61084417-61084436 | None:intergenic | 40.0% |
| TTTCTCTACATGACCTGTAC+TGG | + | chr2_1:61084463-61084482 | Msa0215680:intron | 40.0% | |
| !! | AGTGAGTGAGTATTGAGCTA+AGG | - | chr2_1:61084606-61084625 | None:intergenic | 40.0% |
| GAGGGTTCCAAAGAAATATG+TGG | + | chr2_1:61084807-61084826 | Msa0215680:intron | 40.0% | |
| CAACACCGTTAGGAAACTTA+AGG | - | chr2_1:61084867-61084886 | None:intergenic | 40.0% | |
| GAGTAATGAGAGTTCAGATG+AGG | + | chr2_1:61085209-61085228 | Msa0215680:CDS | 40.0% | |
| CAAACTCAAAGGACCAGAAA+TGG | + | chr2_1:61085246-61085265 | Msa0215680:CDS | 40.0% | |
| AGTTAATGCCTAAACTTGGC+AGG | + | chr2_1:61085595-61085614 | Msa0215680:intron | 40.0% | |
| TGTTACTACCTGCCAAGTTT+AGG | - | chr2_1:61085606-61085625 | None:intergenic | 40.0% | |
| ATGTCACAATCTTACGCCAA+TGG | + | chr2_1:61085703-61085722 | Msa0215680:CDS | 40.0% | |
| GGAACTACAACAATAAGGGT+TGG | + | chr2_1:61085855-61085874 | Msa0215680:CDS | 40.0% | |
| !! | AATATTGTATGGGTGGTGGA+TGG | + | chr2_1:61085928-61085947 | Msa0215680:CDS | 40.0% |
| !! | GTGGTGGATGGAAAATATTC+AGG | + | chr2_1:61085940-61085959 | Msa0215680:CDS | 40.0% |
| !!! | CTTTGGCTTTGGTTCGTTTT+TGG | - | chr2_1:61086054-61086073 | None:intergenic | 40.0% |
| ! | CCTAGTGATTTCTTTGGCTT+TGG | - | chr2_1:61086065-61086084 | None:intergenic | 40.0% |
| CCAAAGCCAAAGAAATCACT+AGG | + | chr2_1:61086062-61086081 | Msa0215680:CDS | 40.0% | |
| GTAAAGAAGCAAGACATTGG+AGG | + | chr2_1:61086220-61086239 | Msa0215680:CDS | 40.0% | |
| AAGACATTGGAGGAACATCT+AGG | + | chr2_1:61086230-61086249 | Msa0215680:CDS | 40.0% | |
| TAGGAGCCATCCAAAAGTAA+AGG | + | chr2_1:61086249-61086268 | Msa0215680:CDS | 40.0% | |
| AGGAGCCATCCAAAAGTAAA+GGG | + | chr2_1:61086250-61086269 | Msa0215680:CDS | 40.0% | |
| TGTGTTTATGCATGTCCAGA+AGG | + | chr2_1:61086653-61086672 | Msa0215680:intron | 40.0% | |
| TTTCGTGAAGAACAAAACCC+CGG | + | chr2_1:61086709-61086728 | Msa0215680:CDS | 40.0% | |
| GTGTCCACCTTATACATTAG+AGG | - | chr2_1:61086863-61086882 | None:intergenic | 40.0% | |
| AGTCTTTGTGGCTGTAAGTT+CGG | + | chr2_1:61087020-61087039 | Msa0215680:CDS | 40.0% | |
| ! | CCTTAAAGAAGCACAGCTAA+TGG | - | chr2_1:61087161-61087180 | None:intergenic | 40.0% |
| CCATTAGCTGTGCTTCTTTA+AGG | + | chr2_1:61087158-61087177 | Msa0215680:CDS | 40.0% | |
| ! | GAAGTGTTAGGACCAGACAA+AGG | + | chr2_1:61082901-61082920 | Msa0215680:five_prime_UTR | 45.0% |
| !!! | CACCCTTTTTGGAACGAGTT+TGG | - | chr2_1:61083036-61083055 | None:intergenic | 45.0% |
| !! | ATTTTGCTATGCGAGCTGGT+TGG | + | chr2_1:61083416-61083435 | Msa0215680:exon | 45.0% |
| ! | CAGGAACATAACTTGCAAGC+TGG | + | chr2_1:61083451-61083470 | Msa0215680:CDS | 45.0% |
| TGTATGCAGTGTGAGACTGT+TGG | + | chr2_1:61084308-61084327 | Msa0215680:intron | 45.0% | |
| AGCTAAGGCTTAGAGAAGTG+AGG | - | chr2_1:61084591-61084610 | None:intergenic | 45.0% | |
| GATGAGGAAGCCATTGAAGA+AGG | + | chr2_1:61085168-61085187 | Msa0215680:CDS | 45.0% | |
| ! | CTGGTCCTTTGAGTTTGCTT+TGG | - | chr2_1:61085243-61085262 | None:intergenic | 45.0% |
| CTTGGCAGGTAGTAACAAAG+TGG | + | chr2_1:61085609-61085628 | Msa0215680:intron | 45.0% | |
| AGGTAGTAACAAAGTGGCCA+TGG | + | chr2_1:61085615-61085634 | Msa0215680:intron | 45.0% | |
| CAAAGTGGCCATGGTAAAGA+AGG | + | chr2_1:61085624-61085643 | Msa0215680:CDS | 45.0% | |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | + | chr2_1:61085872-61085891 | Msa0215680:CDS | 45.0% |
| ! | GAAGGAGCACAAGACATTCA+AGG | + | chr2_1:61086685-61086704 | Msa0215680:CDS | 45.0% |
| GTATCTGCAGTGTGTACCAA+AGG | + | chr2_1:61086920-61086939 | Msa0215680:intron | 45.0% | |
| TGTGGCTGTAAGTTCGGTAA+AGG | + | chr2_1:61087026-61087045 | Msa0215680:CDS | 45.0% | |
| GCTGTAAGTTCGGTAAAGGT+TGG | + | chr2_1:61087030-61087049 | Msa0215680:CDS | 45.0% | |
| !! | TGCTTTGCCCTTTAAAGTGC+TGG | + | chr2_1:61087200-61087219 | Msa0215680:three_prime_UTR | 45.0% |
| !! | ATAAATAATAAATACTTAAT+TGG | + | chr2_1:61085522-61085541 | Msa0215680:intron | 5.0% |
| !! | ATTATATATATTTCTTAATT+TGG | + | chr2_1:61086360-61086379 | Msa0215680:intron | 5.0% |
| AAGAGTAGCAGCTCTGCAAG+AGG | + | chr2_1:61082974-61082993 | Msa0215680:five_prime_UTR | 50.0% | |
| TGGTTGGAAGTCGTTTGTGC+AGG | + | chr2_1:61083432-61083451 | Msa0215680:CDS | 50.0% | |
| GGCATGGTTCCTTTGTAGCT+GGG | - | chr2_1:61083537-61083556 | None:intergenic | 50.0% | |
| AGGCATGGTTCCTTTGTAGC+TGG | - | chr2_1:61083538-61083557 | None:intergenic | 50.0% | |
| AGCTACAAAGGAACCATGCC+TGG | + | chr2_1:61083537-61083556 | Msa0215680:CDS | 50.0% | |
| ! | GGTGCTGAAGACACAGAAGA+AGG | + | chr2_1:61085078-61085097 | Msa0215680:CDS | 50.0% |
| TCCAGAAGGTCGTGATGTGA+AGG | + | chr2_1:61086667-61086686 | Msa0215680:intron | 50.0% | |
| TCCTTCACATCACGACCTTC+TGG | - | chr2_1:61086671-61086690 | None:intergenic | 50.0% | |
| AGCAGCTCTGCAAGAGGCTA+AGG | + | chr2_1:61082980-61082999 | Msa0215680:five_prime_UTR | 55.0% | |
| ! | GCAAGAGGCTAAGGCTCTGA+TGG | + | chr2_1:61082989-61083008 | Msa0215680:five_prime_UTR | 55.0% |
| CCTTGAAACTGCTCCAGGCA+TGG | - | chr2_1:61083553-61083572 | None:intergenic | 55.0% | |
| CCATGCCTGGAGCAGTTTCA+AGG | + | chr2_1:61083550-61083569 | Msa0215680:CDS | 55.0% | |
| GGAGTGTGGAAGTGAGTGTG+AGG | + | chr2_1:61085886-61085905 | Msa0215680:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 61082892 | 61087433 | 61082892 | ID=Msa0215680;Name=Msa0215680 |
| chr2_1 | mRNA | 61082892 | 61087433 | 61082892 | ID=Msa0215680-mRNA-1;Parent=Msa0215680;Name=Msa0215680-mRNA-1;_AED=0.04;_eAED=0.04;_QI=263|0.55|0.6|0.9|0.77|0.6|10|234|482 |
| chr2_1 | exon | 61082892 | 61083022 | 61082892 | ID=Msa0215680-mRNA-1:exon:16816;Parent=Msa0215680-mRNA-1 |
| chr2_1 | exon | 61083292 | 61083571 | 61083292 | ID=Msa0215680-mRNA-1:exon:16817;Parent=Msa0215680-mRNA-1 |
| chr2_1 | exon | 61084654 | 61084688 | 61084654 | ID=Msa0215680-mRNA-1:exon:16818;Parent=Msa0215680-mRNA-1 |
| chr2_1 | exon | 61084808 | 61085285 | 61084808 | ID=Msa0215680-mRNA-1:exon:16819;Parent=Msa0215680-mRNA-1 |
| chr2_1 | exon | 61085617 | 61085735 | 61085617 | ID=Msa0215680-mRNA-1:exon:16820;Parent=Msa0215680-mRNA-1 |
| chr2_1 | exon | 61085810 | 61086083 | 61085810 | ID=Msa0215680-mRNA-1:exon:16821;Parent=Msa0215680-mRNA-1 |
| chr2_1 | exon | 61086185 | 61086271 | 61086185 | ID=Msa0215680-mRNA-1:exon:16822;Parent=Msa0215680-mRNA-1 |
| chr2_1 | exon | 61086672 | 61086730 | 61086672 | ID=Msa0215680-mRNA-1:exon:16823;Parent=Msa0215680-mRNA-1 |
| chr2_1 | exon | 61086930 | 61087333 | 61086930 | ID=Msa0215680-mRNA-1:exon:16824;Parent=Msa0215680-mRNA-1 |
| chr2_1 | exon | 61087355 | 61087433 | 61087355 | ID=Msa0215680-mRNA-1:exon:16825;Parent=Msa0215680-mRNA-1 |
| chr2_1 | five_prime_UTR | 61082892 | 61083022 | 61082892 | ID=Msa0215680-mRNA-1:five_prime_utr;Parent=Msa0215680-mRNA-1 |
| chr2_1 | five_prime_UTR | 61083292 | 61083423 | 61083292 | ID=Msa0215680-mRNA-1:five_prime_utr;Parent=Msa0215680-mRNA-1 |
| chr2_1 | CDS | 61083424 | 61083571 | 61083424 | ID=Msa0215680-mRNA-1:cds;Parent=Msa0215680-mRNA-1 |
| chr2_1 | CDS | 61084654 | 61084688 | 61084654 | ID=Msa0215680-mRNA-1:cds;Parent=Msa0215680-mRNA-1 |
| chr2_1 | CDS | 61084808 | 61085285 | 61084808 | ID=Msa0215680-mRNA-1:cds;Parent=Msa0215680-mRNA-1 |
| chr2_1 | CDS | 61085617 | 61085735 | 61085617 | ID=Msa0215680-mRNA-1:cds;Parent=Msa0215680-mRNA-1 |
| chr2_1 | CDS | 61085810 | 61086083 | 61085810 | ID=Msa0215680-mRNA-1:cds;Parent=Msa0215680-mRNA-1 |
| chr2_1 | CDS | 61086185 | 61086271 | 61086185 | ID=Msa0215680-mRNA-1:cds;Parent=Msa0215680-mRNA-1 |
| chr2_1 | CDS | 61086672 | 61086730 | 61086672 | ID=Msa0215680-mRNA-1:cds;Parent=Msa0215680-mRNA-1 |
| chr2_1 | CDS | 61086930 | 61087178 | 61086930 | ID=Msa0215680-mRNA-1:cds;Parent=Msa0215680-mRNA-1 |
| chr2_1 | three_prime_UTR | 61087179 | 61087333 | 61087179 | ID=Msa0215680-mRNA-1:three_prime_utr;Parent=Msa0215680-mRNA-1 |
| chr2_1 | three_prime_UTR | 61087355 | 61087433 | 61087355 | ID=Msa0215680-mRNA-1:three_prime_utr;Parent=Msa0215680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
