Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107120 | XP_039688434.1 | 73.068 | 453 | 90 | 5 | 45 | 482 | 3 | 438 | 0.0 | 656 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107120 | sp|Q8L3W1|VRN1_ARATH | 26.347 | 334 | 199 | 11 | 51 | 340 | 6 | 336 | 1.21e-20 | 96.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107120 | A0A396JPN4 | 73.068 | 453 | 90 | 5 | 45 | 482 | 3 | 438 | 0.0 | 656 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0107120 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013670 | Msa0107120 | 0.852694 | 3.901293e-61 | -8.615850e-47 |
| Msa0017510 | Msa0107120 | 0.825693 | 4.079512e-54 | -8.615850e-47 |
| Msa0062600 | Msa0107120 | 0.945042 | 6.387369e-104 | -8.615850e-47 |
| Msa0067940 | Msa0107120 | 0.825116 | 5.585160e-54 | -8.615850e-47 |
| Msa0107020 | Msa0107120 | 0.945616 | 2.188841e-104 | -8.615850e-47 |
| Msa0107120 | Msa0107180 | 0.992845 | 8.412916e-196 | -8.615850e-47 |
| Msa0107120 | Msa0128020 | 0.807916 | 4.000374e-50 | -8.615850e-47 |
| Msa0107120 | Msa0157290 | 0.825531 | 4.456175e-54 | -8.615850e-47 |
| Msa0107120 | Msa0165220 | 0.806595 | 7.622831e-50 | -8.615850e-47 |
| Msa0107120 | Msa0200260 | 0.800413 | 1.458416e-48 | -8.615850e-47 |
| Msa0107120 | Msa0215680 | 0.984072 | 1.652688e-159 | -8.615850e-47 |
| Msa0107120 | Msa0222890 | 0.803621 | 3.194741e-49 | -8.615850e-47 |
| Msa0107120 | Msa0357340 | 0.803372 | 3.596994e-49 | -8.615850e-47 |
| Msa0107120 | Msa0502890 | 0.800659 | 1.298902e-48 | -8.615850e-47 |
| Msa0107120 | Msa0597330 | 0.804901 | 1.729039e-49 | -8.615850e-47 |
| Msa0107120 | Msa0602390 | 0.808229 | 3.431985e-50 | -8.615850e-47 |
| Msa0107120 | Msa0610430 | 0.802503 | 5.438733e-49 | -8.615850e-47 |
| Msa0107120 | Msa0657970 | 0.806314 | 8.737274e-50 | -8.615850e-47 |
| Msa0107120 | Msa0681270 | 0.805174 | 1.516267e-49 | -8.615850e-47 |
| Msa0107120 | Msa0691380 | 0.808792 | 2.602206e-50 | -8.615850e-47 |
| Msa0107120 | Msa0743720 | 0.823380 | 1.429398e-53 | -8.615850e-47 |
| Msa0107120 | Msa0796700 | 0.808256 | 3.386985e-50 | -8.615850e-47 |
| Msa0107120 | Msa0824680 | 0.801449 | 8.955691e-49 | -8.615850e-47 |
| Msa0107120 | Msa0880140 | 0.821816 | 3.301947e-53 | -8.615850e-47 |
| Msa0107120 | Msa0947660 | 0.805709 | 1.170851e-49 | -8.615850e-47 |
| Msa0107120 | Msa0959360 | 0.807077 | 6.028932e-50 | -8.615850e-47 |
| Msa0107120 | Msa0993290 | 0.814039 | 1.887433e-51 | -8.615850e-47 |
| Msa0107120 | Msa0993600 | 0.818304 | 2.102565e-52 | -8.615850e-47 |
| Msa0107120 | Msa1014540 | 0.828483 | 8.767326e-55 | -8.615850e-47 |
| Msa0107120 | Msa1082500 | 0.807019 | 6.202230e-50 | -8.615850e-47 |
| Msa0107120 | Msa1253020 | 0.801303 | 9.595698e-49 | -8.615850e-47 |
| Msa0107120 | Msa1269230 | 0.800916 | 1.151361e-48 | -8.615850e-47 |
| Msa0107120 | Msa1359040 | 0.803298 | 3.727443e-49 | -8.615850e-47 |
| Msa0107120 | Msa1466540 | 0.801329 | 9.478118e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107120 | MtrunA17_Chr1g0163181 | 73.068 | 453 | 90 | 5 | 45 | 482 | 3 | 438 | 0.0 | 656 |
| Msa0107120 | MtrunA17_Chr1g0163201 | 70.629 | 429 | 69 | 5 | 62 | 480 | 18 | 399 | 0.0 | 561 |
| Msa0107120 | MtrunA17_Chr1g0163251 | 51.831 | 355 | 120 | 4 | 50 | 387 | 8 | 328 | 4.41e-112 | 337 |
| Msa0107120 | MtrunA17_Chr1g0163251 | 58.824 | 51 | 21 | 0 | 1 | 51 | 243 | 293 | 2.11e-11 | 65.5 |
| Msa0107120 | MtrunA17_Chr1g0163151 | 66.135 | 251 | 53 | 2 | 227 | 474 | 1 | 222 | 4.53e-111 | 327 |
| Msa0107120 | MtrunA17_Chr1g0163151 | 32.593 | 135 | 74 | 4 | 3 | 124 | 79 | 209 | 5.36e-11 | 62.4 |
| Msa0107120 | MtrunA17_Chr1g0163111 | 65.476 | 252 | 62 | 5 | 227 | 475 | 1 | 230 | 2.38e-105 | 313 |
| Msa0107120 | MtrunA17_Chr1g0163231 | 44.872 | 312 | 125 | 8 | 45 | 342 | 3 | 281 | 4.87e-78 | 246 |
| Msa0107120 | MtrunA17_Chr1g0163261 | 43.564 | 303 | 134 | 4 | 56 | 349 | 18 | 292 | 7.95e-78 | 245 |
| Msa0107120 | MtrunA17_Chr1g0163191 | 73.596 | 178 | 27 | 2 | 44 | 221 | 2 | 159 | 1.34e-74 | 232 |
| Msa0107120 | MtrunA17_Chr1g0171611 | 44.409 | 313 | 113 | 8 | 45 | 342 | 3 | 269 | 1.44e-73 | 234 |
| Msa0107120 | MtrunA17_Chr1g0163241 | 59.091 | 176 | 36 | 3 | 44 | 218 | 8 | 148 | 2.24e-57 | 187 |
| Msa0107120 | MtrunA17_Chr6g0476171 | 34.191 | 272 | 132 | 6 | 220 | 473 | 3 | 245 | 4.61e-41 | 147 |
| Msa0107120 | MtrunA17_Chr6g0476171 | 45.600 | 125 | 50 | 5 | 1 | 111 | 98 | 218 | 3.42e-19 | 87.0 |
| Msa0107120 | MtrunA17_Chr1g0208771 | 27.155 | 464 | 266 | 15 | 62 | 472 | 12 | 456 | 3.69e-38 | 145 |
| Msa0107120 | MtrunA17_Chr1g0162151 | 35.458 | 251 | 110 | 6 | 227 | 471 | 1 | 205 | 2.16e-37 | 136 |
| Msa0107120 | MtrunA17_Chr1g0163131 | 32.990 | 291 | 177 | 9 | 56 | 339 | 27 | 306 | 1.21e-36 | 137 |
| Msa0107120 | MtrunA17_Chr1g0163131 | 37.500 | 160 | 83 | 6 | 331 | 475 | 151 | 308 | 2.12e-20 | 91.7 |
| Msa0107120 | MtrunA17_Chr8g0390841 | 25.553 | 497 | 288 | 17 | 45 | 472 | 33 | 516 | 1.27e-36 | 141 |
| Msa0107120 | MtrunA17_Chr7g0233561 | 31.988 | 322 | 180 | 11 | 51 | 350 | 18 | 322 | 2.65e-34 | 131 |
| Msa0107120 | MtrunA17_Chr3g0131891 | 31.419 | 296 | 172 | 9 | 56 | 340 | 28 | 303 | 5.09e-32 | 125 |
| Msa0107120 | MtrunA17_Chr1g0163091 | 42.424 | 132 | 71 | 1 | 227 | 353 | 1 | 132 | 7.25e-31 | 117 |
| Msa0107120 | MtrunA17_Chr7g0233541 | 31.959 | 291 | 173 | 9 | 63 | 340 | 2 | 280 | 1.41e-30 | 120 |
| Msa0107120 | MtrunA17_Chr7g0233521 | 32.056 | 287 | 161 | 10 | 63 | 340 | 2 | 263 | 3.36e-30 | 119 |
| Msa0107120 | MtrunA17_Chr1g0163101 | 48.246 | 114 | 56 | 2 | 56 | 169 | 26 | 136 | 2.70e-28 | 110 |
| Msa0107120 | MtrunA17_Chr7g0233531 | 32.867 | 286 | 160 | 10 | 63 | 340 | 2 | 263 | 7.40e-27 | 109 |
| Msa0107120 | MtrunA17_Chr3g0103171 | 27.586 | 290 | 167 | 10 | 62 | 338 | 5 | 264 | 3.30e-25 | 104 |
| Msa0107120 | MtrunA17_Chr1g0162161 | 42.727 | 110 | 60 | 2 | 63 | 172 | 4 | 110 | 7.32e-25 | 100 |
| Msa0107120 | MtrunA17_Chr1g0163071 | 23.780 | 328 | 182 | 8 | 63 | 352 | 2 | 299 | 8.30e-25 | 104 |
| Msa0107120 | MtrunA17_Chr1g0163121 | 45.536 | 112 | 58 | 2 | 61 | 172 | 9 | 117 | 1.15e-24 | 99.4 |
| Msa0107120 | MtrunA17_Chr3g0103181 | 25.256 | 293 | 188 | 8 | 51 | 338 | 12 | 278 | 6.09e-24 | 101 |
| Msa0107120 | MtrunA17_Chr4g0067431 | 27.362 | 307 | 193 | 9 | 51 | 338 | 15 | 310 | 2.43e-23 | 100 |
| Msa0107120 | MtrunA17_Chr6g0476181 | 41.600 | 125 | 66 | 3 | 63 | 186 | 2 | 120 | 4.08e-23 | 95.9 |
| Msa0107120 | MtrunA17_Chr1g0163081 | 40.909 | 110 | 62 | 2 | 63 | 172 | 6 | 112 | 2.13e-22 | 93.2 |
| Msa0107120 | MtrunA17_Chr1g0163221 | 28.477 | 302 | 181 | 9 | 48 | 338 | 12 | 289 | 1.45e-21 | 95.9 |
| Msa0107120 | MtrunA17_Chr7g0233571 | 31.163 | 215 | 133 | 6 | 51 | 257 | 10 | 217 | 7.24e-21 | 91.3 |
| Msa0107120 | MtrunA17_Chr3g0103151 | 37.815 | 119 | 68 | 3 | 51 | 165 | 12 | 128 | 1.07e-19 | 86.3 |
| Msa0107120 | MtrunA17_Chr1g0163141 | 42.000 | 100 | 57 | 1 | 59 | 158 | 7 | 105 | 2.17e-19 | 85.9 |
| Msa0107120 | MtrunA17_Chr3g0103191 | 31.548 | 168 | 105 | 5 | 51 | 210 | 12 | 177 | 9.85e-19 | 85.9 |
| Msa0107120 | MtrunA17_Chr5g0419201 | 34.074 | 135 | 82 | 2 | 56 | 183 | 25 | 159 | 5.71e-18 | 82.0 |
| Msa0107120 | MtrunA17_Chr1g0163161 | 42.105 | 95 | 52 | 2 | 75 | 169 | 1 | 92 | 1.06e-17 | 79.7 |
| Msa0107120 | MtrunA17_Chr6g0467351 | 35.000 | 120 | 70 | 3 | 55 | 166 | 23 | 142 | 5.71e-15 | 74.3 |
| Msa0107120 | MtrunA17_Chr1g0154041 | 23.975 | 317 | 190 | 10 | 59 | 328 | 27 | 339 | 1.84e-14 | 75.9 |
| Msa0107120 | MtrunA17_Chr3g0077411 | 20.760 | 342 | 223 | 8 | 4 | 338 | 215 | 515 | 1.42e-12 | 69.7 |
| Msa0107120 | MtrunA17_Chr3g0077461 | 25.907 | 193 | 133 | 4 | 1 | 187 | 187 | 375 | 1.88e-12 | 69.3 |
| Msa0107120 | MtrunA17_Chr4g0033961 | 36.364 | 99 | 57 | 2 | 51 | 143 | 6 | 104 | 2.68e-12 | 68.6 |
| Msa0107120 | MtrunA17_Chr1g0162441 | 33.945 | 109 | 65 | 3 | 51 | 152 | 7 | 115 | 1.32e-11 | 66.6 |
| Msa0107120 | MtrunA17_Chr5g0419211 | 32.632 | 95 | 63 | 1 | 261 | 354 | 10 | 104 | 8.17e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107120 | AT3G18990.2 | 26.113 | 337 | 202 | 11 | 51 | 343 | 6 | 339 | 8.97e-22 | 97.1 |
| Msa0107120 | AT3G18990.1 | 26.347 | 334 | 199 | 11 | 51 | 340 | 6 | 336 | 1.23e-21 | 96.3 |
Find 101 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTAGCTGTGCTTCTTTA+AGG | 0.068553 | 1_3:+17137530 | Msa0107120:CDS |
| TTTGCAAAGCCTTTCAAATA+TGG | 0.180110 | 1_3:+17135321 | Msa0107120:CDS |
| AAATATCTTGGAGTTGAAAA+TGG | 0.201158 | 1_3:+17137331 | Msa0107120:CDS |
| ATAAATATCCAGCACTTTAA+AGG | 0.218530 | 1_3:-17137580 | None:intergenic |
| TATTTCTCCACATATTTCTT+TGG | 0.248757 | 1_3:-17135186 | None:intergenic |
| ATGCTGACACAATACTTCTT+AGG | 0.258399 | 1_3:-17137658 | None:intergenic |
| CATTAACATCTTCAGATCTT+AGG | 0.260861 | 1_3:-17136029 | None:intergenic |
| TTCATCAACTGATTTGATAT+TGG | 0.261684 | 1_3:-17135427 | None:intergenic |
| AGAAATATGTGGAGAAATAT+TGG | 0.281812 | 1_3:+17135190 | Msa0107120:CDS |
| TGGAGAGTAATGGTGATATT+TGG | 0.287546 | 1_3:+17135277 | Msa0107120:CDS |
| TTAATGGAACTACAACAATA+AGG | 0.294713 | 1_3:+17136222 | Msa0107120:CDS |
| GTGTTTGATGTTTCAATTGT+AGG | 0.300485 | 1_3:+17137500 | Msa0107120:CDS |
| CTCTTAACTTTCAAATTCAT+TGG | 0.314459 | 1_3:+17135348 | Msa0107120:CDS |
| TTAGGAAACTTAAGGAATAT+AGG | 0.318222 | 1_3:-17135228 | None:intergenic |
| ATAGTAACATTGAATGAAAT+TGG | 0.319993 | 1_3:-17136392 | None:intergenic |
| AGGCATGGTTCCTTTGTAGC+TGG | 0.320210 | 1_3:-17133907 | None:intergenic |
| AGAAAACCTAGTGATTTCTT+TGG | 0.323706 | 1_3:-17136440 | None:intergenic |
| AGAGCAATACCCTTTACTTT+TGG | 0.331691 | 1_3:-17136631 | None:intergenic |
| CCTAGTGATTTCTTTGGCTT+TGG | 0.332979 | 1_3:-17136434 | None:intergenic |
| AGAAGTATTGTGTCAGCATT+TGG | 0.339148 | 1_3:+17137662 | Msa0107120:three_prime_UTR |
| CTGGTCCTTTGAGTTTGCTT+TGG | 0.341746 | 1_3:-17135612 | None:intergenic |
| TAGGAAACTTAAGGAATATA+GGG | 0.346499 | 1_3:-17135227 | None:intergenic |
| TGTTCTCTTGAAAACTCATT+TGG | 0.346666 | 1_3:-17136188 | None:intergenic |
| AATATCTTGGAGTTGAAAAT+GGG | 0.359463 | 1_3:+17137332 | Msa0107120:CDS |
| TGAAACAGAGGATACCTAAT+TGG | 0.359645 | 1_3:+17133656 | Msa0107120:intron |
| CGACGTTAAATTTCGATGAA+TGG | 0.363870 | 1_3:+17133758 | Msa0107120:five_prime_UTR |
| TAATGGAACTACAACAATAA+GGG | 0.368234 | 1_3:+17136223 | Msa0107120:CDS |
| TGCTTTGCCCTTTAAAGTGC+TGG | 0.375844 | 1_3:+17137572 | Msa0107120:three_prime_UTR |
| ACTTTCTTCACCTTCTTCAA+TGG | 0.380996 | 1_3:-17135550 | None:intergenic |
| TCATGATTCATAAACTCCTT+TGG | 0.383485 | 1_3:-17137308 | None:intergenic |
| TATGAATCATGAAAATATCT+TGG | 0.394934 | 1_3:+17137319 | Msa0107120:CDS |
| CAACACCGTTAGGAAACTTA+AGG | 0.403140 | 1_3:-17135236 | None:intergenic |
| ATAGTTTATTTCTAAAGTAT+TGG | 0.406626 | 1_3:-17135403 | None:intergenic |
| CCTTAAAGAAGCACAGCTAA+TGG | 0.407485 | 1_3:-17137530 | None:intergenic |
| AGCAGCTCTGCAAGAGGCTA+AGG | 0.411495 | 1_3:+17133352 | Msa0107120:five_prime_UTR |
| GTGGTGGATGGAAAATATTC+AGG | 0.420444 | 1_3:+17136312 | Msa0107120:CDS |
| TAAATATCCAGCACTTTAAA+GGG | 0.428813 | 1_3:-17137579 | None:intergenic |
| TTTAGGTTCTATGATATTTG+TGG | 0.430149 | 1_3:+17137722 | Msa0107120:intron |
| AAAGAATGCAAAGTGGAGAT+TGG | 0.431700 | 1_3:+17137437 | Msa0107120:CDS |
| AGCTACAAAGGAACCATGCC+TGG | 0.433161 | 1_3:+17133909 | Msa0107120:CDS |
| AAATATTATGAGAGTCTTTG+TGG | 0.437608 | 1_3:+17137380 | Msa0107120:CDS |
| ATAGTAATTGTGAATGAAAG+TGG | 0.438268 | 1_3:-17133880 | None:intergenic |
| AGTCTTTGTGGCTGTAAGTT+CGG | 0.438865 | 1_3:+17137392 | Msa0107120:CDS |
| CAAACTCAAAGGACCAGAAA+TGG | 0.451853 | 1_3:+17135618 | Msa0107120:CDS |
| GGCATGGTTCCTTTGTAGCT+GGG | 0.456521 | 1_3:-17133906 | None:intergenic |
| GATATTTGTTCTGTGATTGT+TGG | 0.466702 | 1_3:+17137684 | Msa0107120:three_prime_UTR |
| TTAACTTTCAAATTCATTGG+TGG | 0.475675 | 1_3:+17135351 | Msa0107120:CDS |
| AGGAGCCATCCAAAAGTAAA+GGG | 0.477165 | 1_3:+17136622 | Msa0107120:CDS |
| TAGGAGCCATCCAAAAGTAA+AGG | 0.478853 | 1_3:+17136621 | Msa0107120:CDS |
| CAAAGTGGCCATGGTAAAGA+AGG | 0.488314 | 1_3:+17135996 | Msa0107120:CDS |
| TGAAAATGGGGAGAAAATCA+TGG | 0.492046 | 1_3:+17137345 | Msa0107120:CDS |
| TGACATTATAACTTCAAAAG+AGG | 0.495408 | 1_3:-17136058 | None:intergenic |
| TGTGGCTGTAAGTTCGGTAA+AGG | 0.504977 | 1_3:+17137398 | Msa0107120:CDS |
| CCATGCCTGGAGCAGTTTCA+AGG | 0.511461 | 1_3:+17133922 | Msa0107120:CDS |
| GCTGTAAGTTCGGTAAAGGT+TGG | 0.518813 | 1_3:+17137402 | Msa0107120:CDS |
| AAATACCTTGAAACTGCTCC+AGG | 0.519839 | 1_3:-17133927 | None:intergenic |
| AAGAGATATCCATATTTGAA+AGG | 0.520085 | 1_3:-17135330 | None:intergenic |
| TGGTTGGAAGTCGTTTGTGC+AGG | 0.521812 | 1_3:+17133804 | Msa0107120:CDS |
| AATGGCAAGAGAAAATTCTC+AGG | 0.523324 | 1_3:+17135636 | Msa0107120:CDS |
| GACATTATAACTTCAAAAGA+GGG | 0.525934 | 1_3:-17136057 | None:intergenic |
| AAGACATTGGAGGAACATCT+AGG | 0.526190 | 1_3:+17136602 | Msa0107120:CDS |
| GTGACTGTTACTGAAGTGTT+AGG | 0.532912 | 1_3:+17133261 | None:intergenic |
| GAAGGAGCACAAGACATTCA+AGG | 0.537945 | 1_3:+17137057 | Msa0107120:CDS |
| AATATCAAATCAGTTGATGA+AGG | 0.540855 | 1_3:+17135429 | Msa0107120:CDS |
| GATGAGGAAGCCATTGAAGA+AGG | 0.544836 | 1_3:+17135540 | Msa0107120:CDS |
| GCAAGAGGCTAAGGCTCTGA+TGG | 0.545145 | 1_3:+17133361 | Msa0107120:five_prime_UTR |
| CCAAAGCCAAAGAAATCACT+AGG | 0.556666 | 1_3:+17136434 | Msa0107120:CDS |
| GTAAATTTGAGATGATTCGA+CGG | 0.557247 | 1_3:+17136366 | Msa0107120:CDS |
| GTTGTAAAGAAGCAAGACAT+TGG | 0.558494 | 1_3:+17136589 | Msa0107120:CDS |
| CAATAAGGGTTGGTAATGAA+AGG | 0.558627 | 1_3:+17136237 | Msa0107120:CDS |
| TCCAGAAGGTCGTGATGTGA+AGG | 0.558641 | 1_3:+17137039 | Msa0107120:intron |
| AAGTGATGAATCAAGTGATG+AGG | 0.567308 | 1_3:+17135524 | Msa0107120:CDS |
| TACATGAAAGAGTTGTTGCA+AGG | 0.571480 | 1_3:+17133691 | Msa0107120:five_prime_UTR |
| AGGTAGTAACAAAGTGGCCA+TGG | 0.577811 | 1_3:+17135987 | Msa0107120:intron |
| CCTTGAAACTGCTCCAGGCA+TGG | 0.579128 | 1_3:-17133922 | None:intergenic |
| ACTTACAAAGAAATAGCCAT+TGG | 0.583056 | 1_3:-17136091 | None:intergenic |
| AATATTGTATGGGTGGTGGA+TGG | 0.587908 | 1_3:+17136300 | Msa0107120:CDS |
| GGTGCTGAAGACACAGAAGA+AGG | 0.588176 | 1_3:+17135450 | Msa0107120:CDS |
| ATATTCCTTAAGTTTCCTAA+CGG | 0.590322 | 1_3:+17135231 | Msa0107120:CDS |
| GAGTAATGAGAGTTCAGATG+AGG | 0.591415 | 1_3:+17135581 | Msa0107120:CDS |
| GAGGGTTCCAAAGAAATATG+TGG | 0.594786 | 1_3:+17135179 | Msa0107120:intron |
| AAGAGTAGCAGCTCTGCAAG+AGG | 0.595627 | 1_3:+17133346 | Msa0107120:five_prime_UTR |
| GGAACTACAACAATAAGGGT+TGG | 0.596420 | 1_3:+17136227 | Msa0107120:CDS |
| GTATCTGCAGTGTGTACCAA+AGG | 0.598126 | 1_3:+17137292 | Msa0107120:intron |
| GTAAAGAAGCAAGACATTGG+AGG | 0.602206 | 1_3:+17136592 | Msa0107120:CDS |
| ATGTCACAATCTTACGCCAA+TGG | 0.605717 | 1_3:+17136075 | Msa0107120:CDS |
| GGTTGGTAATGAAAGGAGTG+TGG | 0.605745 | 1_3:+17136244 | Msa0107120:CDS |
| TACTATTATCCCAGCTACAA+AGG | 0.605894 | 1_3:+17133897 | Msa0107120:CDS |
| ACATGAAAGAGTTGTTGCAA+GGG | 0.610644 | 1_3:+17133692 | Msa0107120:five_prime_UTR |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1_3:+17135195 | Msa0107120:CDS |
| ATTCATGAAAGAATGCAAAG+TGG | 0.625279 | 1_3:+17137430 | Msa0107120:CDS |
| CAGGAACATAACTTGCAAGC+TGG | 0.628096 | 1_3:+17133823 | Msa0107120:CDS |
| TTTCGTGAAGAACAAAACCC+CGG | 0.628138 | 1_3:+17137081 | Msa0107120:CDS |
| ATATCTTGGAGTTGAAAATG+GGG | 0.639227 | 1_3:+17137333 | Msa0107120:CDS |
| AACGATTAGAAATGTTGATG+AGG | 0.639795 | 1_3:+17133720 | Msa0107120:five_prime_UTR |
| AAATACCAAAGCAAACTCAA+AGG | 0.654830 | 1_3:+17135607 | Msa0107120:CDS |
| GGAGTGTGGAAGTGAGTGTG+AGG | 0.659449 | 1_3:+17136258 | Msa0107120:CDS |
| TAGCTTTAAGCATTGCTCAG+AGG | 0.663605 | 1_3:+17133314 | Msa0107120:five_prime_UTR |
| CTTGGCAGGTAGTAACAAAG+TGG | 0.671173 | 1_3:+17135981 | Msa0107120:intron |
| GAAGTGTTAGGACCAGACAA+AGG | 0.713261 | 1_3:+17133273 | Msa0107120:five_prime_UTR |
| ATGTTGATGAGGACATGACA+TGG | 0.737782 | 1_3:+17133731 | Msa0107120:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAAAATGTGATTTTTTT+TGG | + | chr1_3:17135839-17135858 | Msa0107120:intron | 10.0% |
| !! | AACCAAATACTTATATATTA+TGG | - | chr1_3:17134086-17134105 | None:intergenic | 15.0% |
| !!! | ATTTAATCAATTTTGTTTGT+TGG | + | chr1_3:17134364-17134383 | Msa0107120:intron | 15.0% |
| !!! | ATTTTCTATCTAATTTTTTC+TGG | - | chr1_3:17134809-17134828 | None:intergenic | 15.0% |
| !!! | TAAAGATATTTTTTGTAGTA+TGG | - | chr1_3:17134886-17134905 | None:intergenic | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | + | chr1_3:17135254-17135273 | Msa0107120:CDS | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | + | chr1_3:17135292-17135311 | Msa0107120:CDS | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | + | chr1_3:17135293-17135312 | Msa0107120:CDS | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | + | chr1_3:17135378-17135397 | Msa0107120:CDS | 15.0% |
| !!! | ATAGTTTATTTCTAAAGTAT+TGG | - | chr1_3:17135406-17135425 | None:intergenic | 15.0% |
| !!! | TTATTTTAAGAGTTATTGAA+TGG | + | chr1_3:17135738-17135757 | Msa0107120:intron | 15.0% |
| !!! | TTCTTTCTTTCTTTTTTATT+TGG | + | chr1_3:17136459-17136478 | Msa0107120:intron | 15.0% |
| !!! | TTTAGATTTTATTATTGTAG+AGG | + | chr1_3:17136669-17136688 | Msa0107120:intron | 15.0% |
| !!! | TTAGATTTTATTATTGTAGA+GGG | + | chr1_3:17136670-17136689 | Msa0107120:intron | 15.0% |
| !! | AAACTTATGAATGATTTATA+AGG | + | chr1_3:17136760-17136779 | Msa0107120:intron | 15.0% |
| !! | TAAAAAATATTTCAATTCAC+AGG | - | chr1_3:17136836-17136855 | None:intergenic | 15.0% |
| !! | ATTTGAATAGATTTATAGTT+AGG | - | chr1_3:17136953-17136972 | None:intergenic | 15.0% |
| !!! | TCAAATGTATCTAAATTTTT+TGG | + | chr1_3:17136967-17136986 | Msa0107120:intron | 15.0% |
| !!! | CAAATGTATCTAAATTTTTT+GGG | + | chr1_3:17136968-17136987 | Msa0107120:intron | 15.0% |
| !! | TTTATGTAATTATATCTTAC+CGG | - | chr1_3:17137103-17137122 | None:intergenic | 15.0% |
| !! | ATTCATTAATCAAACGTATA+AGG | - | chr1_3:17133604-17133623 | None:intergenic | 20.0% |
| !!! | TATTCTTTTGAAATCCAATT+AGG | - | chr1_3:17133673-17133692 | None:intergenic | 20.0% |
| !!! | TCTTTCGTTATTATTGTTTT+TGG | + | chr1_3:17133949-17133968 | Msa0107120:intron | 20.0% |
| !! | CACCATAATATATAAGTATT+TGG | + | chr1_3:17134081-17134100 | Msa0107120:intron | 20.0% |
| !! | ATTATGCATGTATATATTAC+AGG | + | chr1_3:17134147-17134166 | Msa0107120:intron | 20.0% |
| !! | TTATGCATGTATATATTACA+GGG | + | chr1_3:17134148-17134167 | Msa0107120:intron | 20.0% |
| !!! | AATATATTCCAGATTTTCAT+AGG | + | chr1_3:17135014-17135033 | Msa0107120:intron | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | + | chr1_3:17135253-17135272 | Msa0107120:CDS | 20.0% |
| !!! | AAAATGTGATTTTTTTTGGT+AGG | + | chr1_3:17135843-17135862 | Msa0107120:intron | 20.0% |
| !! | ATAGTAACATTGAATGAAAT+TGG | - | chr1_3:17136395-17136414 | None:intergenic | 20.0% |
| !! | TTATGTAATTATATCTTACC+GGG | - | chr1_3:17137102-17137121 | None:intergenic | 20.0% |
| !! | AGGTTAAAAGTTAATAGAAT+GGG | - | chr1_3:17137215-17137234 | None:intergenic | 20.0% |
| !! | TACAAACAAAAATATTAGTG+AGG | - | chr1_3:17137275-17137294 | None:intergenic | 20.0% |
| !! | TATGAATCATGAAAATATCT+TGG | + | chr1_3:17137319-17137338 | Msa0107120:CDS | 20.0% |
| !!! | ACAATTTTAAGCAATGTATT+TGG | + | chr1_3:17137607-17137626 | Msa0107120:three_prime_UTR | 20.0% |
| !!! | TATGTTGTTTTAGTTGAGTT+TGG | + | chr1_3:17133540-17133559 | Msa0107120:intron | 25.0% |
| ! | ACCTTATTACAACATATAAG+CGG | - | chr1_3:17133576-17133595 | None:intergenic | 25.0% |
| ! | TATATGTTGTAATAAGGTTC+AGG | + | chr1_3:17133578-17133597 | Msa0107120:intron | 25.0% |
| ! | ATAGTAATTGTGAATGAAAG+TGG | - | chr1_3:17133883-17133902 | None:intergenic | 25.0% |
| ! | TCAATCATATATGTTCATCA+TGG | + | chr1_3:17134052-17134071 | Msa0107120:intron | 25.0% |
| !!! | GGTTTTAGTCATTCTAATAT+TGG | + | chr1_3:17134102-17134121 | Msa0107120:intron | 25.0% |
| !!! | AGTTTTTTTCCAAGTACTAA+AGG | + | chr1_3:17134255-17134274 | Msa0107120:intron | 25.0% |
| ! | TATATATCACCTTTAGTACT+TGG | - | chr1_3:17134267-17134286 | None:intergenic | 25.0% |
| !! | ACTTTATGATGACATAGTTT+TGG | - | chr1_3:17134414-17134433 | None:intergenic | 25.0% |
| !!! | TTTTTACATAAGGTACTGTA+GGG | - | chr1_3:17134622-17134641 | None:intergenic | 25.0% |
| !!! | ATTTTTACATAAGGTACTGT+AGG | - | chr1_3:17134623-17134642 | None:intergenic | 25.0% |
| ! | TACAGTACCTTATGTAAAAA+TGG | + | chr1_3:17134622-17134641 | Msa0107120:intron | 25.0% |
| !!! | ATATCTGCCATTTTTACATA+AGG | - | chr1_3:17134632-17134651 | None:intergenic | 25.0% |
| ! | TGTAAAAATGGCAGATATTA+AGG | + | chr1_3:17134634-17134653 | Msa0107120:intron | 25.0% |
| ! | GTAAAAATGGCAGATATTAA+GGG | + | chr1_3:17134635-17134654 | Msa0107120:intron | 25.0% |
| ! | GCATACATTAAAAAACACAA+TGG | - | chr1_3:17134667-17134686 | None:intergenic | 25.0% |
| !!! | CTTTTTTATCGTGTCATAAA+TGG | + | chr1_3:17134753-17134772 | Msa0107120:intron | 25.0% |
| ! | TATTTCTCCACATATTTCTT+TGG | - | chr1_3:17135189-17135208 | None:intergenic | 25.0% |
| ! | AGAAATATGTGGAGAAATAT+TGG | + | chr1_3:17135190-17135209 | Msa0107120:CDS | 25.0% |
| ! | TAGGAAACTTAAGGAATATA+GGG | - | chr1_3:17135230-17135249 | None:intergenic | 25.0% |
| ! | TTAGGAAACTTAAGGAATAT+AGG | - | chr1_3:17135231-17135250 | None:intergenic | 25.0% |
| ! | ATATTCCTTAAGTTTCCTAA+CGG | + | chr1_3:17135231-17135250 | Msa0107120:CDS | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | + | chr1_3:17135257-17135276 | Msa0107120:CDS | 25.0% |
| ! | AAGAGATATCCATATTTGAA+AGG | - | chr1_3:17135333-17135352 | None:intergenic | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | + | chr1_3:17135348-17135367 | Msa0107120:CDS | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | + | chr1_3:17135351-17135370 | Msa0107120:CDS | 25.0% |
| !!! | TTCATCAACTGATTTGATAT+TGG | - | chr1_3:17135430-17135449 | None:intergenic | 25.0% |
| !!! | AATATCAAATCAGTTGATGA+AGG | + | chr1_3:17135429-17135448 | Msa0107120:CDS | 25.0% |
| ! | AAATAGTTAATGCCTAAACT+TGG | + | chr1_3:17135963-17135982 | Msa0107120:intron | 25.0% |
| ! | GACATTATAACTTCAAAAGA+GGG | - | chr1_3:17136060-17136079 | None:intergenic | 25.0% |
| ! | TGACATTATAACTTCAAAAG+AGG | - | chr1_3:17136061-17136080 | None:intergenic | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+TGG | + | chr1_3:17136206-17136225 | Msa0107120:CDS | 25.0% |
| ! | TTAATGGAACTACAACAATA+AGG | + | chr1_3:17136222-17136241 | Msa0107120:CDS | 25.0% |
| ! | TAATGGAACTACAACAATAA+GGG | + | chr1_3:17136223-17136242 | Msa0107120:CDS | 25.0% |
| ! | TACCCAGAAAAAATATTGTA+TGG | + | chr1_3:17136289-17136308 | Msa0107120:CDS | 25.0% |
| ! | ACCCAGAAAAAATATTGTAT+GGG | + | chr1_3:17136290-17136309 | Msa0107120:CDS | 25.0% |
| !!! | ACCCATACAATATTTTTTCT+GGG | - | chr1_3:17136294-17136313 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTTATCCATGACA+AGG | + | chr1_3:17136535-17136554 | Msa0107120:intron | 25.0% |
| ! | CATGACAAGGTTATAAAAAA+GGG | + | chr1_3:17136548-17136567 | Msa0107120:intron | 25.0% |
| ! | ATGACAAGGTTATAAAAAAG+GGG | + | chr1_3:17136549-17136568 | Msa0107120:intron | 25.0% |
| ! | TGAATGATTTATAAGGTTCT+TGG | + | chr1_3:17136767-17136786 | Msa0107120:intron | 25.0% |
| ! | TAAAAGAAGAAACTGAAAAC+TGG | - | chr1_3:17136922-17136941 | None:intergenic | 25.0% |
| ! | TATGTAATTATATCTTACCG+GGG | - | chr1_3:17137101-17137120 | None:intergenic | 25.0% |
| ! | ATTGAACGAAAGTTAGTTAT+GGG | - | chr1_3:17137156-17137175 | None:intergenic | 25.0% |
| ! | AATTGAACGAAAGTTAGTTA+TGG | - | chr1_3:17137157-17137176 | None:intergenic | 25.0% |
| ! | GAGGTTAAAAGTTAATAGAA+TGG | - | chr1_3:17137216-17137235 | None:intergenic | 25.0% |
| !! | CTTTTAACCTCTAATGTATA+AGG | + | chr1_3:17137225-17137244 | Msa0107120:intron | 25.0% |
| ! | AAATATCTTGGAGTTGAAAA+TGG | + | chr1_3:17137331-17137350 | Msa0107120:CDS | 25.0% |
| ! | AATATCTTGGAGTTGAAAAT+GGG | + | chr1_3:17137332-17137351 | Msa0107120:CDS | 25.0% |
| ! | AAATATTATGAGAGTCTTTG+TGG | + | chr1_3:17137380-17137399 | Msa0107120:CDS | 25.0% |
| ! | TAAATATCCAGCACTTTAAA+GGG | - | chr1_3:17137582-17137601 | None:intergenic | 25.0% |
| ! | ATAAATATCCAGCACTTTAA+AGG | - | chr1_3:17137583-17137602 | None:intergenic | 25.0% |
| !! | TTTAGGTTCTATGATATTTG+TGG | + | chr1_3:17137722-17137741 | Msa0107120:intron | 25.0% |
| ! | TTCTGAATTTTTCCTTTGTC+TGG | - | chr1_3:17133288-17133307 | None:intergenic | 30.0% |
| CATGACAGTCAAACATATTT+GGG | - | chr1_3:17133445-17133464 | None:intergenic | 30.0% | |
| TCATGACAGTCAAACATATT+TGG | - | chr1_3:17133446-17133465 | None:intergenic | 30.0% | |
| AACGATTAGAAATGTTGATG+AGG | + | chr1_3:17133720-17133739 | Msa0107120:five_prime_UTR | 30.0% | |
| !!! | TTTGGCTCAAATCACTTTTT+AGG | - | chr1_3:17134396-17134415 | None:intergenic | 30.0% |
| GAATGAAACATTCAATGACT+CGG | + | chr1_3:17134471-17134490 | Msa0107120:intron | 30.0% | |
| !!! | CTTTTAATTTGCCACAAAAG+TGG | - | chr1_3:17134555-17134574 | None:intergenic | 30.0% |
| !!! | TTTTTCTGGTGTTACTACTT+TGG | - | chr1_3:17134795-17134814 | None:intergenic | 30.0% |
| AAGATGATCCTATGAAAATC+TGG | - | chr1_3:17135025-17135044 | None:intergenic | 30.0% | |
| TTTGAATTTCTTTGTTGCAG+AGG | + | chr1_3:17135160-17135179 | Msa0107120:intron | 30.0% | |
| TTGAATTTCTTTGTTGCAGA+GGG | + | chr1_3:17135161-17135180 | Msa0107120:intron | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | + | chr1_3:17135195-17135214 | Msa0107120:CDS | 30.0% | |
| !!! | ATTTTTTGTTCAACACCGTT+AGG | - | chr1_3:17135249-17135268 | None:intergenic | 30.0% |
| TTTGCAAAGCCTTTCAAATA+TGG | + | chr1_3:17135321-17135340 | Msa0107120:CDS | 30.0% | |
| !! | CATTGGTGGATCATATTTTA+AGG | + | chr1_3:17135365-17135384 | Msa0107120:CDS | 30.0% |
| AAATACCAAAGCAAACTCAA+AGG | + | chr1_3:17135607-17135626 | Msa0107120:CDS | 30.0% | |
| !!! | ATTCTCAGGTTGATCTTTTT+TGG | + | chr1_3:17135650-17135669 | Msa0107120:intron | 30.0% |
| !!! | TTCTCAGGTTGATCTTTTTT+GGG | + | chr1_3:17135651-17135670 | Msa0107120:intron | 30.0% |
| !!! | GATCTTTTTTGGGTAGATTT+AGG | + | chr1_3:17135661-17135680 | Msa0107120:intron | 30.0% |
| ! | AGAGTTATTGAATGGTTTGT+TGG | + | chr1_3:17135746-17135765 | Msa0107120:intron | 30.0% |
| ! | GTTGGAATTTTATGTCTGAA+AGG | + | chr1_3:17135764-17135783 | Msa0107120:intron | 30.0% |
| CATTAACATCTTCAGATCTT+AGG | - | chr1_3:17136032-17136051 | None:intergenic | 30.0% | |
| ACTTACAAAGAAATAGCCAT+TGG | - | chr1_3:17136094-17136113 | None:intergenic | 30.0% | |
| TAAACCATTACTTGAAACAG+TGG | + | chr1_3:17136162-17136181 | Msa0107120:intron | 30.0% | |
| TGTTCTCTTGAAAACTCATT+TGG | - | chr1_3:17136191-17136210 | None:intergenic | 30.0% | |
| !!! | CACCCATACAATATTTTTTC+TGG | - | chr1_3:17136295-17136314 | None:intergenic | 30.0% |
| CAGAAAAAATATTGTATGGG+TGG | + | chr1_3:17136293-17136312 | Msa0107120:CDS | 30.0% | |
| AAAAAATATTGTATGGGTGG+TGG | + | chr1_3:17136296-17136315 | Msa0107120:CDS | 30.0% | |
| ! | GTAAATTTGAGATGATTCGA+CGG | + | chr1_3:17136366-17136385 | Msa0107120:CDS | 30.0% |
| AGAAAACCTAGTGATTTCTT+TGG | - | chr1_3:17136443-17136462 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTATAACCTTGTCA+TGG | - | chr1_3:17136550-17136569 | None:intergenic | 30.0% |
| CCATGACAAGGTTATAAAAA+AGG | + | chr1_3:17136547-17136566 | Msa0107120:intron | 30.0% | |
| ! | AATGGGATTAACTTGACTAA+CGG | - | chr1_3:17137198-17137217 | None:intergenic | 30.0% |
| TTAACCTCTAATGTATAAGG+TGG | + | chr1_3:17137228-17137247 | Msa0107120:intron | 30.0% | |
| TCATGATTCATAAACTCCTT+TGG | - | chr1_3:17137311-17137330 | None:intergenic | 30.0% | |
| ATATCTTGGAGTTGAAAATG+GGG | + | chr1_3:17137333-17137352 | Msa0107120:CDS | 30.0% | |
| ATTCATGAAAGAATGCAAAG+TGG | + | chr1_3:17137430-17137449 | Msa0107120:CDS | 30.0% | |
| GTGTTTGATGTTTCAATTGT+AGG | + | chr1_3:17137500-17137519 | Msa0107120:CDS | 30.0% | |
| GATATTTGTTCTGTGATTGT+TGG | + | chr1_3:17137684-17137703 | Msa0107120:three_prime_UTR | 30.0% | |
| ! | GGTAATGTGCTTTAAACTTT+AGG | + | chr1_3:17137705-17137724 | Msa0107120:intron | 30.0% |
| ATCCAAACTCGTTCCAAAAA+GGG | + | chr1_3:17133403-17133422 | Msa0107120:intron | 35.0% | |
| !! | GCTTTTGATTACACCCTTTT+TGG | - | chr1_3:17133419-17133438 | None:intergenic | 35.0% |
| ATGCAAAGAAGCAAATCAAC+TGG | - | chr1_3:17133519-17133538 | None:intergenic | 35.0% | |
| GCCGCTTATATGTTGTAATA+AGG | + | chr1_3:17133572-17133591 | Msa0107120:intron | 35.0% | |
| ! | TAAACCATGATCTGAAACAG+AGG | + | chr1_3:17133644-17133663 | Msa0107120:intron | 35.0% |
| TGAAACAGAGGATACCTAAT+TGG | + | chr1_3:17133656-17133675 | Msa0107120:intron | 35.0% | |
| TACATGAAAGAGTTGTTGCA+AGG | + | chr1_3:17133691-17133710 | Msa0107120:five_prime_UTR | 35.0% | |
| ACATGAAAGAGTTGTTGCAA+GGG | + | chr1_3:17133692-17133711 | Msa0107120:five_prime_UTR | 35.0% | |
| CGACGTTAAATTTCGATGAA+TGG | + | chr1_3:17133758-17133777 | Msa0107120:five_prime_UTR | 35.0% | |
| TACTATTATCCCAGCTACAA+AGG | + | chr1_3:17133897-17133916 | Msa0107120:CDS | 35.0% | |
| GTGATGATACACACACAAAT+AGG | + | chr1_3:17134518-17134537 | Msa0107120:intron | 35.0% | |
| !! | ACAAAGCAAATCCACTTTTG+TGG | + | chr1_3:17134541-17134560 | Msa0107120:intron | 35.0% |
| ACTTTATTACTGTCCAGTAC+AGG | - | chr1_3:17134851-17134870 | None:intergenic | 35.0% | |
| ACTGGACAGTAATAAAGTCT+TGG | + | chr1_3:17134853-17134872 | Msa0107120:intron | 35.0% | |
| !! | GGTGAAAGATTTTGAGTGTT+AGG | - | chr1_3:17134942-17134961 | None:intergenic | 35.0% |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | + | chr1_3:17135267-17135286 | Msa0107120:CDS | 35.0% |
| TGGAGAGTAATGGTGATATT+TGG | + | chr1_3:17135277-17135296 | Msa0107120:CDS | 35.0% | |
| AAGTGATGAATCAAGTGATG+AGG | + | chr1_3:17135524-17135543 | Msa0107120:CDS | 35.0% | |
| ACTTTCTTCACCTTCTTCAA+TGG | - | chr1_3:17135553-17135572 | None:intergenic | 35.0% | |
| !! | GAATTTTCTCTTGCCATTTC+TGG | - | chr1_3:17135634-17135653 | None:intergenic | 35.0% |
| AATGGCAAGAGAAAATTCTC+AGG | + | chr1_3:17135636-17135655 | Msa0107120:CDS | 35.0% | |
| !! | TTTTCTAGCCTTCTTTACCA+TGG | - | chr1_3:17136007-17136026 | None:intergenic | 35.0% |
| ! | GTATCCACTGTTTCAAGTAA+TGG | - | chr1_3:17136169-17136188 | None:intergenic | 35.0% |
| !! | CAATAAGGGTTGGTAATGAA+AGG | + | chr1_3:17136237-17136256 | Msa0107120:CDS | 35.0% |
| TATAAAAAAGGGGTCTCTTG+TGG | + | chr1_3:17136559-17136578 | Msa0107120:CDS | 35.0% | |
| GTTGTAAAGAAGCAAGACAT+TGG | + | chr1_3:17136589-17136608 | Msa0107120:CDS | 35.0% | |
| !! | CAATACCCTTTACTTTTGGA+TGG | - | chr1_3:17136630-17136649 | None:intergenic | 35.0% |
| ! | AGAGCAATACCCTTTACTTT+TGG | - | chr1_3:17136634-17136653 | None:intergenic | 35.0% |
| TGAAAATGGGGAGAAAATCA+TGG | + | chr1_3:17137345-17137364 | Msa0107120:CDS | 35.0% | |
| AAAGAATGCAAAGTGGAGAT+TGG | + | chr1_3:17137437-17137456 | Msa0107120:CDS | 35.0% | |
| ATGCTGACACAATACTTCTT+AGG | - | chr1_3:17137661-17137680 | None:intergenic | 35.0% | |
| !! | AGAAGTATTGTGTCAGCATT+TGG | + | chr1_3:17137662-17137681 | Msa0107120:three_prime_UTR | 35.0% |
| !! | TAGCTTTAAGCATTGCTCAG+AGG | + | chr1_3:17133314-17133333 | Msa0107120:five_prime_UTR | 40.0% |
| CATCCAAACTCGTTCCAAAA+AGG | + | chr1_3:17133402-17133421 | Msa0107120:intron | 40.0% | |
| GTATCCTCTGTTTCAGATCA+TGG | - | chr1_3:17133651-17133670 | None:intergenic | 40.0% | |
| ! | ATGTTGATGAGGACATGACA+TGG | + | chr1_3:17133731-17133750 | Msa0107120:five_prime_UTR | 40.0% |
| !! | TGAAATTTTGCTATGCGAGC+TGG | + | chr1_3:17133784-17133803 | Msa0107120:exon | 40.0% |
| AAATACCTTGAAACTGCTCC+AGG | - | chr1_3:17133930-17133949 | None:intergenic | 40.0% | |
| !! | CAAGCACTGAAACAGAACAA+TGG | + | chr1_3:17134197-17134216 | Msa0107120:intron | 40.0% |
| CATTGTGAGCTCATGTGAAA+TGG | + | chr1_3:17134595-17134614 | Msa0107120:intron | 40.0% | |
| !! | TGGTGTTACTACTTTGGTGT+TGG | - | chr1_3:17134789-17134808 | None:intergenic | 40.0% |
| TTTCTCTACATGACCTGTAC+TGG | + | chr1_3:17134835-17134854 | Msa0107120:intron | 40.0% | |
| !! | AGTGAGTGAGTATTGAGCTA+AGG | - | chr1_3:17134978-17134997 | None:intergenic | 40.0% |
| GAGGGTTCCAAAGAAATATG+TGG | + | chr1_3:17135179-17135198 | Msa0107120:intron | 40.0% | |
| CAACACCGTTAGGAAACTTA+AGG | - | chr1_3:17135239-17135258 | None:intergenic | 40.0% | |
| GAGTAATGAGAGTTCAGATG+AGG | + | chr1_3:17135581-17135600 | Msa0107120:CDS | 40.0% | |
| CAAACTCAAAGGACCAGAAA+TGG | + | chr1_3:17135618-17135637 | Msa0107120:CDS | 40.0% | |
| AGTTAATGCCTAAACTTGGC+AGG | + | chr1_3:17135967-17135986 | Msa0107120:intron | 40.0% | |
| TGTTACTACCTGCCAAGTTT+AGG | - | chr1_3:17135978-17135997 | None:intergenic | 40.0% | |
| ATGTCACAATCTTACGCCAA+TGG | + | chr1_3:17136075-17136094 | Msa0107120:CDS | 40.0% | |
| GGAACTACAACAATAAGGGT+TGG | + | chr1_3:17136227-17136246 | Msa0107120:CDS | 40.0% | |
| !! | AATATTGTATGGGTGGTGGA+TGG | + | chr1_3:17136300-17136319 | Msa0107120:CDS | 40.0% |
| !! | GTGGTGGATGGAAAATATTC+AGG | + | chr1_3:17136312-17136331 | Msa0107120:CDS | 40.0% |
| !!! | CTTTGGCTTTGGTTCGTTTT+TGG | - | chr1_3:17136426-17136445 | None:intergenic | 40.0% |
| ! | CCTAGTGATTTCTTTGGCTT+TGG | - | chr1_3:17136437-17136456 | None:intergenic | 40.0% |
| CCAAAGCCAAAGAAATCACT+AGG | + | chr1_3:17136434-17136453 | Msa0107120:CDS | 40.0% | |
| GTAAAGAAGCAAGACATTGG+AGG | + | chr1_3:17136592-17136611 | Msa0107120:CDS | 40.0% | |
| AAGACATTGGAGGAACATCT+AGG | + | chr1_3:17136602-17136621 | Msa0107120:CDS | 40.0% | |
| TAGGAGCCATCCAAAAGTAA+AGG | + | chr1_3:17136621-17136640 | Msa0107120:CDS | 40.0% | |
| AGGAGCCATCCAAAAGTAAA+GGG | + | chr1_3:17136622-17136641 | Msa0107120:CDS | 40.0% | |
| TGTGTTTATGCATGTCCAGA+AGG | + | chr1_3:17137025-17137044 | Msa0107120:intron | 40.0% | |
| TTTCGTGAAGAACAAAACCC+CGG | + | chr1_3:17137081-17137100 | Msa0107120:CDS | 40.0% | |
| GTGTCCACCTTATACATTAG+AGG | - | chr1_3:17137235-17137254 | None:intergenic | 40.0% | |
| AGTCTTTGTGGCTGTAAGTT+CGG | + | chr1_3:17137392-17137411 | Msa0107120:CDS | 40.0% | |
| ! | CCTTAAAGAAGCACAGCTAA+TGG | - | chr1_3:17137533-17137552 | None:intergenic | 40.0% |
| CCATTAGCTGTGCTTCTTTA+AGG | + | chr1_3:17137530-17137549 | Msa0107120:CDS | 40.0% | |
| ! | GAAGTGTTAGGACCAGACAA+AGG | + | chr1_3:17133273-17133292 | Msa0107120:five_prime_UTR | 45.0% |
| !!! | CACCCTTTTTGGAACGAGTT+TGG | - | chr1_3:17133408-17133427 | None:intergenic | 45.0% |
| !! | ATTTTGCTATGCGAGCTGGT+TGG | + | chr1_3:17133788-17133807 | Msa0107120:exon | 45.0% |
| ! | CAGGAACATAACTTGCAAGC+TGG | + | chr1_3:17133823-17133842 | Msa0107120:CDS | 45.0% |
| TGTATGCAGTGTGAGACTGT+TGG | + | chr1_3:17134680-17134699 | Msa0107120:intron | 45.0% | |
| AGCTAAGGCTTAGAGAAGTG+AGG | - | chr1_3:17134963-17134982 | None:intergenic | 45.0% | |
| GATGAGGAAGCCATTGAAGA+AGG | + | chr1_3:17135540-17135559 | Msa0107120:CDS | 45.0% | |
| ! | CTGGTCCTTTGAGTTTGCTT+TGG | - | chr1_3:17135615-17135634 | None:intergenic | 45.0% |
| CTTGGCAGGTAGTAACAAAG+TGG | + | chr1_3:17135981-17136000 | Msa0107120:intron | 45.0% | |
| AGGTAGTAACAAAGTGGCCA+TGG | + | chr1_3:17135987-17136006 | Msa0107120:intron | 45.0% | |
| CAAAGTGGCCATGGTAAAGA+AGG | + | chr1_3:17135996-17136015 | Msa0107120:CDS | 45.0% | |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | + | chr1_3:17136244-17136263 | Msa0107120:CDS | 45.0% |
| ! | GAAGGAGCACAAGACATTCA+AGG | + | chr1_3:17137057-17137076 | Msa0107120:CDS | 45.0% |
| GTATCTGCAGTGTGTACCAA+AGG | + | chr1_3:17137292-17137311 | Msa0107120:intron | 45.0% | |
| TGTGGCTGTAAGTTCGGTAA+AGG | + | chr1_3:17137398-17137417 | Msa0107120:CDS | 45.0% | |
| GCTGTAAGTTCGGTAAAGGT+TGG | + | chr1_3:17137402-17137421 | Msa0107120:CDS | 45.0% | |
| !! | TGCTTTGCCCTTTAAAGTGC+TGG | + | chr1_3:17137572-17137591 | Msa0107120:three_prime_UTR | 45.0% |
| !! | ATAAATAATAAATACTTAAT+TGG | + | chr1_3:17135894-17135913 | Msa0107120:intron | 5.0% |
| !! | ATTATATATATTTCTTAATT+TGG | + | chr1_3:17136732-17136751 | Msa0107120:intron | 5.0% |
| AAGAGTAGCAGCTCTGCAAG+AGG | + | chr1_3:17133346-17133365 | Msa0107120:five_prime_UTR | 50.0% | |
| TGGTTGGAAGTCGTTTGTGC+AGG | + | chr1_3:17133804-17133823 | Msa0107120:CDS | 50.0% | |
| GGCATGGTTCCTTTGTAGCT+GGG | - | chr1_3:17133909-17133928 | None:intergenic | 50.0% | |
| AGGCATGGTTCCTTTGTAGC+TGG | - | chr1_3:17133910-17133929 | None:intergenic | 50.0% | |
| AGCTACAAAGGAACCATGCC+TGG | + | chr1_3:17133909-17133928 | Msa0107120:CDS | 50.0% | |
| ! | GGTGCTGAAGACACAGAAGA+AGG | + | chr1_3:17135450-17135469 | Msa0107120:CDS | 50.0% |
| TCCAGAAGGTCGTGATGTGA+AGG | + | chr1_3:17137039-17137058 | Msa0107120:intron | 50.0% | |
| TCCTTCACATCACGACCTTC+TGG | - | chr1_3:17137043-17137062 | None:intergenic | 50.0% | |
| AGCAGCTCTGCAAGAGGCTA+AGG | + | chr1_3:17133352-17133371 | Msa0107120:five_prime_UTR | 55.0% | |
| ! | GCAAGAGGCTAAGGCTCTGA+TGG | + | chr1_3:17133361-17133380 | Msa0107120:five_prime_UTR | 55.0% |
| CCTTGAAACTGCTCCAGGCA+TGG | - | chr1_3:17133925-17133944 | None:intergenic | 55.0% | |
| CCATGCCTGGAGCAGTTTCA+AGG | + | chr1_3:17133922-17133941 | Msa0107120:CDS | 55.0% | |
| GGAGTGTGGAAGTGAGTGTG+AGG | + | chr1_3:17136258-17136277 | Msa0107120:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 17133264 | 17137805 | 17133264 | ID=Msa0107120;Name=Msa0107120 |
| chr1_3 | mRNA | 17133264 | 17137805 | 17133264 | ID=Msa0107120-mRNA-1;Parent=Msa0107120;Name=Msa0107120-mRNA-1;_AED=0.04;_eAED=0.04;_QI=263|0.55|0.6|0.9|0.77|0.6|10|234|482 |
| chr1_3 | exon | 17133264 | 17133394 | 17133264 | ID=Msa0107120-mRNA-1:exon:6451;Parent=Msa0107120-mRNA-1 |
| chr1_3 | exon | 17133664 | 17133943 | 17133664 | ID=Msa0107120-mRNA-1:exon:6452;Parent=Msa0107120-mRNA-1 |
| chr1_3 | exon | 17135026 | 17135060 | 17135026 | ID=Msa0107120-mRNA-1:exon:6453;Parent=Msa0107120-mRNA-1 |
| chr1_3 | exon | 17135180 | 17135657 | 17135180 | ID=Msa0107120-mRNA-1:exon:6454;Parent=Msa0107120-mRNA-1 |
| chr1_3 | exon | 17135989 | 17136107 | 17135989 | ID=Msa0107120-mRNA-1:exon:6455;Parent=Msa0107120-mRNA-1 |
| chr1_3 | exon | 17136182 | 17136455 | 17136182 | ID=Msa0107120-mRNA-1:exon:6456;Parent=Msa0107120-mRNA-1 |
| chr1_3 | exon | 17136557 | 17136643 | 17136557 | ID=Msa0107120-mRNA-1:exon:6457;Parent=Msa0107120-mRNA-1 |
| chr1_3 | exon | 17137044 | 17137102 | 17137044 | ID=Msa0107120-mRNA-1:exon:6458;Parent=Msa0107120-mRNA-1 |
| chr1_3 | exon | 17137302 | 17137705 | 17137302 | ID=Msa0107120-mRNA-1:exon:6459;Parent=Msa0107120-mRNA-1 |
| chr1_3 | exon | 17137727 | 17137805 | 17137727 | ID=Msa0107120-mRNA-1:exon:6460;Parent=Msa0107120-mRNA-1 |
| chr1_3 | five_prime_UTR | 17133264 | 17133394 | 17133264 | ID=Msa0107120-mRNA-1:five_prime_utr;Parent=Msa0107120-mRNA-1 |
| chr1_3 | five_prime_UTR | 17133664 | 17133795 | 17133664 | ID=Msa0107120-mRNA-1:five_prime_utr;Parent=Msa0107120-mRNA-1 |
| chr1_3 | CDS | 17133796 | 17133943 | 17133796 | ID=Msa0107120-mRNA-1:cds;Parent=Msa0107120-mRNA-1 |
| chr1_3 | CDS | 17135026 | 17135060 | 17135026 | ID=Msa0107120-mRNA-1:cds;Parent=Msa0107120-mRNA-1 |
| chr1_3 | CDS | 17135180 | 17135657 | 17135180 | ID=Msa0107120-mRNA-1:cds;Parent=Msa0107120-mRNA-1 |
| chr1_3 | CDS | 17135989 | 17136107 | 17135989 | ID=Msa0107120-mRNA-1:cds;Parent=Msa0107120-mRNA-1 |
| chr1_3 | CDS | 17136182 | 17136455 | 17136182 | ID=Msa0107120-mRNA-1:cds;Parent=Msa0107120-mRNA-1 |
| chr1_3 | CDS | 17136557 | 17136643 | 17136557 | ID=Msa0107120-mRNA-1:cds;Parent=Msa0107120-mRNA-1 |
| chr1_3 | CDS | 17137044 | 17137102 | 17137044 | ID=Msa0107120-mRNA-1:cds;Parent=Msa0107120-mRNA-1 |
| chr1_3 | CDS | 17137302 | 17137550 | 17137302 | ID=Msa0107120-mRNA-1:cds;Parent=Msa0107120-mRNA-1 |
| chr1_3 | three_prime_UTR | 17137551 | 17137705 | 17137551 | ID=Msa0107120-mRNA-1:three_prime_utr;Parent=Msa0107120-mRNA-1 |
| chr1_3 | three_prime_UTR | 17137727 | 17137805 | 17137727 | ID=Msa0107120-mRNA-1:three_prime_utr;Parent=Msa0107120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
