AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0664060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0664060 MtrunA17_Chr4g0001991 97.510 522 10 2 1 521 1 520 0.0 1038
Msa0664060 MtrunA17_Chr3g0099901 36.253 491 275 13 53 518 8 485 2.00e-80 259
Msa0664060 MtrunA17_Chr3g0099891 38.889 396 209 9 129 518 86 454 3.10e-80 258
Msa0664060 MtrunA17_Chr2g0291201 39.409 406 214 16 132 518 59 451 9.44e-72 235
Msa0664060 MtrunA17_Chr7g0275731 36.804 413 221 10 121 518 97 484 4.39e-71 234
Msa0664060 MtrunA17_Chr1g0212321 35.714 406 229 10 124 518 102 486 1.44e-69 231
Msa0664060 MtrunA17_Chr1g0165201 35.616 365 213 6 163 518 118 469 1.01e-67 225
Msa0664060 MtrunA17_Chr3g0130931 36.000 400 219 14 135 518 70 448 4.57e-65 218
Msa0664060 MtrunA17_Chr6g0484901 33.253 415 243 9 120 518 95 491 6.94e-65 218
Msa0664060 MtrunA17_Chr1g0210201 35.878 393 225 8 135 518 93 467 4.33e-64 216
Msa0664060 MtrunA17_Chr3g0095891 34.286 385 225 12 156 518 80 458 1.52e-59 203
Msa0664060 MtrunA17_Chr5g0442921 33.673 392 229 12 152 519 170 554 2.89e-57 199
Msa0664060 MtrunA17_Chr5g0419291 33.611 360 206 13 174 518 87 428 6.42e-52 182
Msa0664060 MtrunA17_Chr5g0435871 31.781 365 215 13 174 521 90 437 1.05e-46 168
Msa0664060 MtrunA17_Chr8g0352671 33.243 367 205 14 174 519 90 437 1.10e-46 168
Msa0664060 MtrunA17_Chr2g0310831 31.829 421 241 14 121 519 45 441 2.48e-46 167
Msa0664060 MtrunA17_Chr8g0386441 33.056 360 211 14 174 519 87 430 1.14e-45 166
Msa0664060 MtrunA17_Chr5g0435971 31.781 365 215 13 174 521 87 434 1.45e-45 165
Msa0664060 MtrunA17_Chr5g0395911 31.807 415 235 15 129 519 24 414 1.74e-45 164
Msa0664060 MtrunA17_Chr5g0415951 31.956 363 214 13 174 519 89 435 3.40e-45 164
Msa0664060 MtrunA17_Chr2g0310821 29.124 491 285 17 40 519 5 443 2.19e-44 162
Msa0664060 MtrunA17_Chr8g0390761 31.389 360 221 9 156 505 99 442 4.80e-44 161
Msa0664060 MtrunA17_Chr2g0310801 31.010 416 245 14 121 519 44 434 2.18e-43 159
Msa0664060 MtrunA17_Chr2g0307991 32.258 403 216 17 145 519 32 405 2.39e-43 159
Msa0664060 MtrunA17_Chr2g0308001 31.075 428 249 18 116 519 4 409 5.88e-43 158
Msa0664060 MtrunA17_Chr2g0333991 32.520 369 221 15 164 517 79 434 1.14e-42 157
Msa0664060 MtrunA17_Chr2g0311451 32.884 371 221 15 164 519 79 436 8.59e-42 155
Msa0664060 MtrunA17_Chr8g0352661 32.075 371 211 15 174 521 87 439 1.32e-41 154
Msa0664060 MtrunA17_Chr1g0164401 32.626 377 210 14 161 519 79 429 2.46e-41 154
Msa0664060 MtrunA17_Chr3g0087851 30.220 364 220 13 174 519 90 437 2.49e-41 154
Msa0664060 MtrunA17_Chr6g0487471 28.429 401 257 10 135 519 49 435 3.24e-41 153
Msa0664060 MtrunA17_Chr5g0395931 30.100 402 247 12 136 519 51 436 3.23e-39 148
Msa0664060 MtrunA17_Chr3g0133071 32.918 401 235 14 133 518 56 437 6.18e-39 147
Msa0664060 MtrunA17_Chr4g0061641 33.048 351 196 11 186 519 69 397 7.25e-39 146
Msa0664060 MtrunA17_Chr6g0486981 28.469 418 265 15 122 519 34 437 9.56e-39 147
Msa0664060 MtrunA17_Chr8g0353261 30.732 410 247 16 124 519 48 434 1.58e-38 146
Msa0664060 MtrunA17_Chr5g0395871 31.335 367 210 15 173 519 81 425 3.97e-36 139
Msa0664060 MtrunA17_Chr7g0267171 28.899 436 248 16 130 518 45 465 3.82e-35 137
Msa0664060 MtrunA17_Chr5g0399171 28.571 420 231 19 159 521 65 472 4.68e-35 137
Msa0664060 MtrunA17_Chr6g0457401 30.025 403 248 12 135 519 51 437 3.80e-34 134
Msa0664060 MtrunA17_Chr4g0056211 27.619 420 234 17 158 519 64 471 7.97e-32 128
Msa0664060 MtrunA17_Chr3g0112051 29.101 378 201 14 171 520 73 411 1.68e-31 126
Msa0664060 MtrunA17_Chr7g0249451 27.907 430 250 19 129 519 23 431 2.00e-31 127
Msa0664060 MtrunA17_Chr3g0082281 35.000 280 160 9 251 519 52 320 5.75e-31 122
Msa0664060 MtrunA17_Chr7g0239001 31.250 384 217 18 171 521 59 428 6.48e-31 124
Msa0664060 MtrunA17_Chr2g0307461 29.219 397 220 17 143 505 48 417 7.04e-31 124
Msa0664060 MtrunA17_Chr5g0401601 30.303 363 214 15 178 519 95 439 4.33e-30 124
Msa0664060 MtrunA17_Chr1g0189381 29.306 389 224 17 164 519 60 430 4.33e-30 123
Msa0664060 MtrunA17_Chr4g0023351 30.945 307 179 12 116 406 4 293 2.40e-29 117
Msa0664060 MtrunA17_Chr3g0110191 27.441 379 210 19 176 519 91 439 5.99e-29 119
Msa0664060 MtrunA17_Chr7g0221681 26.859 417 251 17 140 519 35 434 9.51e-29 119
Msa0664060 MtrunA17_Chr5g0434411 27.882 373 232 15 171 519 79 438 6.78e-27 113
Msa0664060 MtrunA17_Chr4g0053721 28.571 364 219 15 178 519 87 431 3.02e-26 112
Msa0664060 MtrunA17_Chr4g0027681 29.178 377 215 18 176 520 82 438 1.97e-25 109
Msa0664060 MtrunA17_Chr5g0395891 31.068 309 181 12 227 519 21 313 9.65e-24 102
Msa0664060 MtrunA17_Chr1g0179751 28.833 437 249 22 122 520 59 471 3.45e-23 102
Msa0664060 MtrunA17_Chr6g0484731 27.041 392 243 17 155 518 174 550 2.46e-22 100
Msa0664060 MtrunA17_Chr5g0419151 31.343 268 164 9 263 519 110 368 2.48e-22 98.6
Msa0664060 MtrunA17_Chr2g0312941 25.000 400 243 14 153 516 73 451 2.49e-22 99.8
Msa0664060 MtrunA17_Chr2g0320621 29.759 373 197 18 187 520 93 439 1.45e-21 97.8
Msa0664060 MtrunA17_Chr7g0265331 28.877 374 220 18 176 520 86 442 5.83e-21 95.9
Msa0664060 MtrunA17_Chr3g0124421 25.455 440 270 17 106 518 42 450 1.13e-20 95.1
Msa0664060 MtrunA17_Chr2g0309561 26.580 459 248 21 129 518 70 508 1.19e-20 95.1
Msa0664060 MtrunA17_Chr1g0179091 26.685 356 213 12 173 519 51 367 1.85e-20 93.2
Msa0664060 MtrunA17_Chr3g0130741 26.810 373 228 21 173 521 86 437 9.79e-20 92.0
Msa0664060 MtrunA17_Chr8g0371351 27.467 375 216 17 174 518 101 449 1.63e-17 85.5
Msa0664060 MtrunA17_Chr8g0352691 30.855 269 166 10 261 519 2 260 2.01e-17 82.4
Msa0664060 MtrunA17_Chr5g0434441 25.538 372 244 15 171 519 66 427 2.99e-17 84.3
Msa0664060 MtrunA17_Chr1g0159791 25.474 369 234 15 176 521 62 412 3.33e-17 84.0
Msa0664060 MtrunA17_Chr5g0425141 24.198 405 253 18 142 518 71 449 1.05e-16 82.8
Msa0664060 MtrunA17_Chr1g0185661 26.579 380 205 18 185 514 60 415 2.16e-16 82.8
Msa0664060 MtrunA17_Chr8g0352681 33.913 115 72 3 135 246 50 163 1.46e-15 74.7
Msa0664060 MtrunA17_Chr4g0065581 24.178 426 225 19 161 514 39 438 2.13e-15 78.6
Msa0664060 MtrunA17_Chr2g0287821 25.197 381 211 20 185 514 82 439 3.67e-14 74.7
Msa0664060 MtrunA17_Chr1g0185651 24.627 402 222 16 171 514 54 432 2.57e-12 68.9
Msa0664060 MtrunA17_Chr2g0287811 23.393 389 232 15 174 514 40 410 2.17e-11 65.9
Msa0664060 MtrunA17_Chr2g0287781 23.670 376 221 12 176 505 41 396 7.44e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0664060 AT1G79720.1 58.255 424 171 4 99 518 61 482 5.50e-171 492
Msa0664060 AT5G10770.1 43.467 398 207 10 129 519 88 474 5.03e-97 302
Msa0664060 AT5G10760.1 38.795 415 226 12 111 518 71 464 3.41e-76 248
Msa0664060 AT3G18490.1 34.633 436 245 12 106 518 82 500 1.35e-68 229
Msa0664060 AT3G61820.1 35.904 415 235 10 121 518 83 483 2.21e-68 228
Msa0664060 AT1G25510.1 37.028 424 234 12 107 518 81 483 5.34e-68 227
Msa0664060 AT3G20015.1 33.103 435 262 9 96 518 53 470 1.51e-67 225
Msa0664060 AT1G01300.1 35.990 414 230 13 121 519 92 485 2.52e-67 225
Msa0664060 AT3G59080.1 34.949 392 225 14 154 521 150 535 1.43e-56 197
Msa0664060 AT2G42980.1 34.856 416 234 16 137 521 118 527 2.95e-56 197
Msa0664060 AT2G03200.1 35.519 366 203 12 173 518 106 458 1.75e-55 193
Msa0664060 AT1G09750.1 34.584 373 214 12 161 518 91 448 4.60e-49 176
Msa0664060 AT3G54400.1 32.891 377 210 13 161 519 74 425 3.65e-47 170
Msa0664060 AT1G64830.1 33.795 361 207 14 174 519 86 429 9.60e-45 163
Msa0664060 AT3G59080.2 31.888 392 201 13 154 521 150 499 3.24e-44 163
Msa0664060 AT5G33340.1 31.566 396 245 11 135 519 55 435 3.85e-44 162
Msa0664060 AT1G31450.1 30.958 407 245 14 137 519 48 442 3.72e-43 159
Msa0664060 AT2G35615.1 32.452 416 237 16 130 519 47 444 1.43e-42 157
Msa0664060 AT3G25700.1 30.077 389 239 13 159 520 69 451 3.97e-42 157
Msa0664060 AT5G07030.1 29.647 425 243 16 115 519 67 455 1.97e-41 155
Msa0664060 AT4G30030.1 29.742 427 217 18 144 521 30 422 1.89e-38 146
Msa0664060 AT2G28040.2 29.144 374 223 12 157 519 40 382 2.15e-36 139
Msa0664060 AT2G28040.1 28.608 388 235 12 143 519 35 391 2.39e-36 139
Msa0664060 AT5G36260.1 27.990 418 240 18 140 519 40 434 3.48e-36 140
Msa0664060 AT2G28010.1 29.692 357 211 9 174 519 65 392 2.11e-35 137
Msa0664060 AT4G30040.1 27.896 423 239 17 121 513 41 427 2.27e-35 137
Msa0664060 AT5G02190.1 31.733 375 201 19 183 518 84 442 4.15e-34 134
Msa0664060 AT2G28030.1 30.294 340 199 9 189 519 78 388 5.54e-34 133
Msa0664060 AT3G02740.1 30.332 422 237 21 131 519 43 440 2.41e-32 130
Msa0664060 AT3G52500.1 30.102 392 215 13 174 519 90 468 3.08e-32 129
Msa0664060 AT2G28225.1 30.411 365 202 14 174 519 67 398 1.47e-31 126
Msa0664060 AT5G45120.1 30.070 429 231 21 153 518 56 478 1.22e-30 125
Msa0664060 AT3G02740.2 30.423 378 209 18 174 519 10 365 6.06e-30 122
Msa0664060 AT2G23945.1 27.384 409 246 16 135 518 66 448 9.77e-30 122
Msa0664060 AT2G28220.1 29.396 364 207 12 174 519 67 398 1.93e-29 120
Msa0664060 AT5G43100.2 29.006 362 216 13 178 521 82 420 3.61e-29 120
Msa0664060 AT5G43100.1 29.006 362 216 13 178 521 82 420 4.80e-29 121
Msa0664060 AT2G39710.1 28.307 378 222 16 171 514 64 426 1.44e-28 118
Msa0664060 AT1G65240.1 25.926 405 242 17 150 519 46 427 3.50e-28 117
Msa0664060 AT1G66180.1 26.862 376 223 15 176 521 76 429 2.80e-27 114
Msa0664060 AT1G05840.1 26.353 425 252 17 136 519 35 439 2.83e-27 115
Msa0664060 AT3G12700.1 26.603 421 254 18 127 519 68 461 6.06e-27 114
Msa0664060 AT3G50050.1 28.611 360 218 16 178 519 99 437 1.29e-26 114
Msa0664060 AT5G37540.1 28.075 374 225 16 176 521 84 441 1.49e-26 112
Msa0664060 AT2G36670.2 26.573 429 263 18 124 519 49 458 6.94e-24 105
Msa0664060 AT2G36670.1 26.559 433 261 18 125 519 50 463 9.67e-24 105
Msa0664060 AT1G49050.2 27.019 359 221 17 189 518 49 395 2.62e-23 102
Msa0664060 AT2G36670.4 28.075 374 220 16 176 519 38 392 1.14e-22 101
Msa0664060 AT2G36670.3 28.075 374 220 16 176 519 38 392 1.14e-22 101
Msa0664060 AT1G49050.1 27.019 359 221 17 189 518 222 568 1.39e-22 102
Msa0664060 AT1G08210.3 29.600 375 214 16 176 520 136 490 3.39e-22 100
Msa0664060 AT1G08210.4 29.600 375 214 16 176 520 122 476 3.69e-22 100
Msa0664060 AT4G12920.1 25.722 381 246 12 150 518 32 387 4.94e-22 98.6
Msa0664060 AT1G08210.1 29.600 375 214 16 176 520 88 442 5.84e-22 99.4
Msa0664060 AT5G22850.1 27.614 373 221 15 178 519 87 441 1.55e-20 95.1
Msa0664060 AT5G10080.1 26.620 432 257 21 116 518 53 453 2.60e-20 94.7
Msa0664060 AT5G24820.1 31.429 245 150 10 281 518 166 399 6.80e-20 92.4
Msa0664060 AT3G51360.9 27.873 409 242 22 137 518 63 445 2.30e-19 91.7
Msa0664060 AT3G51360.1 27.873 409 242 22 137 518 53 435 2.60e-19 91.3
Msa0664060 AT1G08210.2 27.930 401 214 16 176 520 88 469 1.08e-18 89.7
Msa0664060 AT4G16563.1 26.949 449 239 18 145 519 59 492 1.20e-18 89.4
Msa0664060 AT1G77480.2 26.330 376 223 19 174 518 67 419 2.56e-18 87.8
Msa0664060 AT4G35880.1 27.027 370 220 17 174 518 107 451 3.86e-18 87.8
Msa0664060 AT1G49050.3 30.380 237 141 13 189 412 222 447 4.02e-18 87.4
Msa0664060 AT1G77480.1 26.330 376 223 19 174 518 67 419 4.69e-18 87.4
Msa0664060 AT3G51360.7 29.032 372 217 21 171 518 3 351 9.26e-18 85.9
Msa0664060 AT2G17760.1 25.424 413 244 21 134 518 73 449 1.40e-17 86.3
Msa0664060 AT3G42550.1 26.810 373 205 17 165 520 70 391 2.75e-17 84.7
Msa0664060 AT3G51360.6 27.676 383 226 20 137 493 63 420 4.73e-15 77.8
Msa0664060 AT3G51360.10 27.676 383 226 20 137 493 53 410 7.26e-15 77.4
Msa0664060 AT4G35880.2 27.577 359 204 18 174 501 107 440 8.76e-15 77.0
Msa0664060 AT3G51340.1 25.390 449 249 24 125 518 42 459 5.24e-14 75.1
Msa0664060 AT3G51360.5 27.348 362 213 19 137 473 63 399 5.76e-14 74.3
Msa0664060 AT3G51360.4 27.348 362 213 19 137 473 53 389 7.83e-14 73.9
Msa0664060 AT1G03220.1 26.190 378 209 17 186 514 58 414 2.50e-13 72.4
Msa0664060 AT1G44130.1 24.747 396 235 20 157 518 33 399 2.78e-13 72.0
Msa0664060 AT3G51340.3 26.462 359 193 20 125 439 42 373 6.69e-13 70.9
Msa0664060 AT3G51360.2 29.766 299 162 17 137 412 63 336 8.30e-13 70.1
Msa0664060 AT3G51340.4 26.536 358 192 20 125 438 42 372 8.37e-13 70.5
Msa0664060 AT3G25700.2 31.429 140 86 4 159 289 69 207 1.13e-12 69.7
Msa0664060 AT3G51350.1 26.316 304 176 16 176 453 106 387 1.55e-11 67.0
Msa0664060 AT3G51360.3 27.812 320 194 18 213 518 13 309 1.90e-11 66.2
Msa0664060 AT3G51360.8 27.812 320 194 18 213 518 13 309 1.90e-11 66.2
Msa0664060 AT5G48430.1 25.641 234 152 9 298 514 161 389 5.78e-11 65.1

Find 131 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCACCAGCGCTTTCAATTT+TGG 0.116640 4_4:+3033961 Msa0664060:CDS
TTCCCTTGCAAATCCAATTT+TGG 0.138834 4_4:-3034212 None:intergenic
ATTAGCTTCTGGTATAAATT+TGG 0.167225 4_4:+3033172 Msa0664060:CDS
GGTTTATTTGGCGGAGTTTC+CGG 0.173823 4_4:+3033566 Msa0664060:CDS
TACCAGAAGCTAATGGAATT+TGG 0.188959 4_4:-3033163 None:intergenic
CTGCTAAACTCACTTGATTC+TGG 0.197254 4_4:-3032405 None:intergenic
GCTCAAAGAGGAAAATTAAT+TGG 0.217816 4_4:+3033027 Msa0664060:CDS
CTGTAGTAAATTGAAGATTT+TGG 0.227131 4_4:-3033382 None:intergenic
ATCACTCTACAATGCTTTAA+AGG 0.230293 4_4:+3033904 Msa0664060:CDS
ACTTGTGCATGAGGAATTAT+TGG 0.230427 4_4:-3032064 None:intergenic
AGATTCTGAGTGGTGGAATT+TGG 0.234300 4_4:-3032126 None:intergenic
AGGAACAACAAAGGTTTATT+TGG 0.239871 4_4:+3033554 Msa0664060:CDS
CAAACTTGTGAAACATCTTT+TGG 0.244817 4_4:-3034094 None:intergenic
GCTTCTGGTTCGTTAGTTAT+AGG 0.255179 4_4:+3033689 Msa0664060:CDS
TTGCAAAGGAACCATCAATT+TGG 0.275677 4_4:+3032363 Msa0664060:CDS
GATGCCAAACAGTCCAAAAT+TGG 0.277573 4_4:+3034199 Msa0664060:CDS
TGTAACTACACTGTTAATTA+TGG 0.278665 4_4:+3033443 Msa0664060:CDS
GCATAAGAATGGCATTTATC+AGG 0.289129 4_4:+3034405 Msa0664060:three_prime_UTR
TTATAGGAAGAGGAGTTAGA+AGG 0.297373 4_4:-3033332 None:intergenic
ATTGCATAGTAATGAGTTAT+AGG 0.299729 4_4:-3033348 None:intergenic
TATGCTAGTACCATGTTATA+AGG 0.302392 4_4:-3034387 None:intergenic
TGGCGGAGTTTCCGGTATAA+TGG 0.306505 4_4:+3033574 Msa0664060:CDS
AACCTCTATCCTTCATTTCC+AGG 0.323356 4_4:-3033001 None:intergenic
TCCAATTGCTTACACCAGTA+TGG 0.324069 4_4:+3033742 Msa0664060:CDS
CTTGTGCATGAGGAATTATT+GGG 0.332740 4_4:-3032063 None:intergenic
TTAAACTACATTGTGACAAT+AGG 0.336630 4_4:+3033200 Msa0664060:CDS
CTTTACTTTATCATTGCAAA+TGG 0.351371 4_4:+3032300 Msa0664060:CDS
GGCGGCATTCTAATTGATTC+GGG 0.357040 4_4:+3033857 Msa0664060:CDS
GGCGGAGTTTCCGGTATAAT+GGG 0.359276 4_4:+3033575 Msa0664060:CDS
GGTGTTGAACACCTTAGTTT+TGG 0.364925 4_4:+3033494 Msa0664060:CDS
AACCCTTTGAACCAAATTGA+TGG 0.374016 4_4:-3032374 None:intergenic
GTTTCCGGTATAATGGGATT+AGG 0.374940 4_4:+3033581 Msa0664060:CDS
TCTCAAACCAATACTACATT+TGG 0.375336 4_4:+3033626 Msa0664060:CDS
ATCCAAATTCCATTAGCTTC+TGG 0.382267 4_4:+3033161 Msa0664060:CDS
AGATGTTTCACAAGTTTGTT+TGG 0.383515 4_4:+3034099 Msa0664060:CDS
CGGCGGCATTCTAATTGATT+CGG 0.391462 4_4:+3033856 Msa0664060:CDS
GTTCTCAAAATGCATACTTA+AGG 0.391586 4_4:-3034029 None:intergenic
TCCTAGGTATATTGTTGTGT+TGG 0.394898 4_4:+3034431 Msa0664060:three_prime_UTR
AACCATCAATTTGGTTCAAA+GGG 0.397366 4_4:+3032372 Msa0664060:CDS
TTTACTTTATCATTGCAAAT+GGG 0.400260 4_4:+3032301 Msa0664060:CDS
GCGTTCGTTCAATGCAAAAC+AGG 0.405597 4_4:+3033090 Msa0664060:CDS
GACCCATGTTAAGTCACTTC+CGG 0.405924 4_4:-3033258 None:intergenic
ACAACAGATAGTGGAGCTTC+TGG 0.413420 4_4:+3033674 Msa0664060:CDS
ACAGTGTAGTTACAACTAGA+TGG 0.419587 4_4:-3033434 None:intergenic
TGCTAAACTCACTTGATTCT+GGG 0.420600 4_4:-3032404 None:intergenic
GATACATGTTTCAATCTGAC+TGG 0.429219 4_4:+3033983 Msa0664060:CDS
ACCATACTGGTGTAAGCAAT+TGG 0.433713 4_4:-3033743 None:intergenic
TACATTCTAACGACTAATGA+AGG 0.435890 4_4:-3034524 None:intergenic
AACTCCTCCAAATGTAGTAT+TGG 0.435957 4_4:-3033633 None:intergenic
TATAGGAAGAGGAGTTAGAA+GGG 0.438177 4_4:-3033331 None:intergenic
CAAAATCTTCAATTTACTAC+AGG 0.450090 4_4:+3033383 Msa0664060:CDS
TGGTTTGAGATATCATTGAT+AGG 0.450378 4_4:-3033613 None:intergenic
GAAAATGACATGGCCATCAT+TGG 0.451254 4_4:+3034142 Msa0664060:CDS
AAATTTATACCAGAAGCTAA+TGG 0.452517 4_4:-3033170 None:intergenic
GAGTTAGAAGGGTTGAAAAC+AGG 0.454527 4_4:-3033320 None:intergenic
GAACCATCAATTTGGTTCAA+AGG 0.454718 4_4:+3032371 Msa0664060:CDS
TTTCAATCTGACTGGGATTG+AGG 0.457854 4_4:+3033991 Msa0664060:CDS
ATTGAAAGCGCTGGTGCAGT+AGG 0.468332 4_4:-3033956 None:intergenic
TGCTATCATCCTGGAAATGA+AGG 0.473597 4_4:+3032992 Msa0664060:CDS
CTACATTGTGACAATAGGAT+TGG 0.476581 4_4:+3033205 Msa0664060:CDS
CTGAAATACCTCCAAAACTA+AGG 0.477800 4_4:-3033505 None:intergenic
TTTGAGAGTGAGAGTGAGAG+AGG 0.478223 4_4:-3032160 None:intergenic
GAAGCTCCACTATCTGTTGT+TGG 0.483250 4_4:-3033671 None:intergenic
TGTTTACCAACAACAGATAG+TGG 0.485285 4_4:+3033665 Msa0664060:CDS
TTGCTGATAATTCCCAATGA+TGG 0.485574 4_4:-3034155 None:intergenic
AACAACAAAGGTTTATTTGG+CGG 0.485648 4_4:+3033557 Msa0664060:CDS
TAGTAATGAGTTATAGGAAG+AGG 0.486105 4_4:-3033342 None:intergenic
GCTATACAAGATACAAGCTT+TGG 0.488883 4_4:+3033830 Msa0664060:CDS
AATAATTCCTCATGCACAAG+TGG 0.503365 4_4:+3032066 Msa0664060:five_prime_UTR
CTGTGGATTCGAAACCATAC+TGG 0.504481 4_4:-3033756 None:intergenic
AAAATGACATGGCCATCATT+GGG 0.506693 4_4:+3034143 Msa0664060:CDS
TACATTGTGACAATAGGATT+GGG 0.507768 4_4:+3033206 Msa0664060:CDS
TACACTGTTAATTATGGTGA+TGG 0.513189 4_4:+3033449 Msa0664060:CDS
TCTTCCTAATCCCATTATAC+CGG 0.514997 4_4:-3033585 None:intergenic
TTTAAAGCATTGTAGAGTGA+TGG 0.518382 4_4:-3033902 None:intergenic
AGTCCAAAATTGGATTTGCA+AGG 0.526949 4_4:+3034209 Msa0664060:CDS
AGAGAGGAGATTCTGAGTGG+TGG 0.529729 4_4:-3032133 None:intergenic
GGAGAAAGGTGCTATCATCC+TGG 0.532708 4_4:+3032983 Msa0664060:CDS
CAAACCAATACTACATTTGG+AGG 0.533626 4_4:+3033629 Msa0664060:CDS
TCATTTACTGATGGAGAGCT+AGG 0.535270 4_4:+3033473 Msa0664060:CDS
TACTTTATCATTGCAAATGG+GGG 0.538295 4_4:+3032303 Msa0664060:CDS
AGGATTCGAGCAAAGGTCAC+TGG 0.542029 4_4:+3033110 Msa0664060:CDS
ACATGGTACTAGCATAAGAA+TGG 0.545030 4_4:+3034394 Msa0664060:three_prime_UTR
GTATACCCCACTTGTGCATG+AGG 0.547445 4_4:-3032073 None:intergenic
ATCCTGGAAATGAAGGATAG+AGG 0.549194 4_4:+3032999 Msa0664060:CDS
GCAAAACAGGATTCGAGCAA+AGG 0.549551 4_4:+3033103 Msa0664060:CDS
TTACTTTATCATTGCAAATG+GGG 0.552454 4_4:+3032302 Msa0664060:CDS
GGGGACGGTGATCACGAGAC+TGG 0.553312 4_4:+3033877 Msa0664060:CDS
ATTTGGCATGAGAACAAAAG+AGG 0.553530 4_4:-3032109 None:intergenic
ACATAAAAGTTTGACAGCTG+TGG 0.554888 4_4:-3033773 None:intergenic
GCTATACTAGATGTCTTACA+TGG 0.558943 4_4:+3034265 Msa0664060:three_prime_UTR
GTATCCAAAATTGAAAGCGC+TGG 0.559484 4_4:-3033965 None:intergenic
AATGGAAGTAGTAAGAAAGA+AGG 0.561935 4_4:-3032187 None:intergenic
ATACATGTTTCAATCTGACT+GGG 0.569669 4_4:+3033984 Msa0664060:CDS
GTCCAAAATTGGATTTGCAA+GGG 0.571372 4_4:+3034210 Msa0664060:CDS
CTATGTTTAGCCTTATAACA+TGG 0.585435 4_4:+3034377 Msa0664060:three_prime_UTR
TCAAAATGCATACTTAAGGT+AGG 0.585670 4_4:-3034025 None:intergenic
TTGAAAGCGCTGGTGCAGTA+GGG 0.585756 4_4:-3033955 None:intergenic
GGTGATGGATCATTTACTGA+TGG 0.587322 4_4:+3033464 Msa0664060:CDS
TCAAAGTGCAAATGTTGCAA+AGG 0.591098 4_4:+3032349 Msa0664060:CDS
AACCTCACCGGCATAGATGT+TGG 0.592272 4_4:+3033800 Msa0664060:CDS
ATACCGGAAGTGACTTAACA+TGG 0.592681 4_4:+3033255 Msa0664060:CDS
CACACCACCAACATCTATGC+CGG 0.596117 4_4:-3033807 None:intergenic
ATGACTGTGATAATCGATAC+CGG 0.597232 4_4:+3033239 Msa0664060:CDS
ATTATCAGCAAAGGAATCAG+AGG 0.598713 4_4:+3034167 Msa0664060:CDS
CATTCTAATTGATTCGGGGA+CGG 0.599880 4_4:+3033862 Msa0664060:CDS
AGTTATAGGTAACGAGTCGT+CGG 0.608924 4_4:+3033703 Msa0664060:CDS
ATAATTCCTCATGCACAAGT+GGG 0.612413 4_4:+3032067 Msa0664060:five_prime_UTR
CGGCATAGATGTTGGTGGTG+TGG 0.619156 4_4:+3033808 Msa0664060:CDS
GATACAAGCTTTGGCAACGG+CGG 0.621391 4_4:+3033839 Msa0664060:CDS
GGTTGTGGTAGGAACAACAA+AGG 0.627341 4_4:+3033545 Msa0664060:CDS
ACATTCTAACGACTAATGAA+GGG 0.629925 4_4:-3034523 None:intergenic
TGACTATAACATGACATACA+AGG 0.632056 4_4:-3033290 None:intergenic
ATGACATACAAGGATCACAT+TGG 0.633313 4_4:-3033280 None:intergenic
TCATTGGGAATTATCAGCAA+AGG 0.636393 4_4:+3034158 Msa0664060:CDS
CTCACCGGCATAGATGTTGG+TGG 0.638961 4_4:+3033803 Msa0664060:CDS
GCCAACACAACAATATACCT+AGG 0.649059 4_4:-3034432 None:intergenic
CAAGATACAAGCTTTGGCAA+CGG 0.651619 4_4:+3033836 Msa0664060:CDS
TTGTGCATGAGGAATTATTG+GGG 0.654243 4_4:-3032062 None:intergenic
GATCTGAATGTGGATGCAGT+TGG 0.657282 4_4:+3034058 Msa0664060:CDS
TTATCAGCAAAGGAATCAGA+GGG 0.658240 4_4:+3034168 Msa0664060:CDS
ATAGAGGTTATTGCTCAAAG+AGG 0.659200 4_4:+3033015 Msa0664060:CDS
AAAAGAGAGGAGATTCTGAG+TGG 0.664323 4_4:-3032136 None:intergenic
GAACAATGTTGATCTGAATG+TGG 0.668148 4_4:+3034048 Msa0664060:CDS
ATGTCATGTTATAGTCAACA+AGG 0.669193 4_4:+3033296 Msa0664060:CDS
TCTTTCTGATGAAAATGACA+TGG 0.672995 4_4:+3034132 Msa0664060:CDS
TAATTCCTCATGCACAAGTG+GGG 0.678160 4_4:+3032068 Msa0664060:five_prime_UTR
GCGGCATTCTAATTGATTCG+GGG 0.686863 4_4:+3033858 Msa0664060:CDS
TACCGGAAGTGACTTAACAT+GGG 0.691503 4_4:+3033256 Msa0664060:CDS
CACCAACATCTATGCCGGTG+AGG 0.705570 4_4:-3033802 None:intergenic
TAAACTCACTTGATTCTGGG+AGG 0.709976 4_4:-3032401 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAATGTGATTTTTTA+TGG + chr4_4:3032430-3032449 Msa0664060:intron 10.0%
!! AAAACAAAAGAAAGAAAAAA+TGG - chr4_4:3032279-3032298 None:intergenic 15.0%
!!! ATTTTTTTCAAATTTCACAT+TGG + chr4_4:3032467-3032486 Msa0664060:intron 15.0%
!!! ATATCTTCTTTTAATACTTT+CGG - chr4_4:3032778-3032797 None:intergenic 15.0%
!! GAAAAAGAGAAAAATTCTAA+TGG - chr4_4:3032208-3032227 None:intergenic 20.0%
!! TTTACTTTATCATTGCAAAT+GGG + chr4_4:3032301-3032320 Msa0664060:CDS 20.0%
!! AGATTCTTATAACAGTAAAA+AGG - chr4_4:3032522-3032541 None:intergenic 20.0%
!!! TATCTTCTTTTAATACTTTC+GGG - chr4_4:3032777-3032796 None:intergenic 20.0%
!! ACAACATTAGAGATTTAAAA+TGG - chr4_4:3032883-3032902 None:intergenic 20.0%
!!! TTCTTTGAATCTGAATTTTT+AGG + chr4_4:3032957-3032976 Msa0664060:intron 20.0%
!!! TCAGTTAGTAATTTTGTTTT+TGG + chr4_4:3033524-3033543 Msa0664060:CDS 20.0%
!!! TGTATATAAATTTTCGTAGT+AGG - chr4_4:3034350-3034369 None:intergenic 20.0%
!! TTACTCTTTTCACAAATTCA+TGG + chr4_4:3032230-3032249 Msa0664060:CDS 25.0%
! CTTTACTTTATCATTGCAAA+TGG + chr4_4:3032300-3032319 Msa0664060:CDS 25.0%
! TTACTTTATCATTGCAAATG+GGG + chr4_4:3032302-3032321 Msa0664060:CDS 25.0%
!! ATCTTCTTTTAATACTTTCG+GGG - chr4_4:3032776-3032795 None:intergenic 25.0%
! TATTATCTTGGAAATGAGAA+AGG + chr4_4:3032919-3032938 Msa0664060:intron 25.0%
!!! TGAATCTGAATTTTTAGGAA+AGG + chr4_4:3032962-3032981 Msa0664060:intron 25.0%
! AAATTTATACCAGAAGCTAA+TGG - chr4_4:3033173-3033192 None:intergenic 25.0%
!! ATTAGCTTCTGGTATAAATT+TGG + chr4_4:3033172-3033191 Msa0664060:CDS 25.0%
! TTAAACTACATTGTGACAAT+AGG + chr4_4:3033200-3033219 Msa0664060:CDS 25.0%
! ATTGCATAGTAATGAGTTAT+AGG - chr4_4:3033351-3033370 None:intergenic 25.0%
!! CTGTAGTAAATTGAAGATTT+TGG - chr4_4:3033385-3033404 None:intergenic 25.0%
! CAAAATCTTCAATTTACTAC+AGG + chr4_4:3033383-3033402 Msa0664060:CDS 25.0%
! TGTAACTACACTGTTAATTA+TGG + chr4_4:3033443-3033462 Msa0664060:CDS 25.0%
!!! AGTAATTTTGTTTTTGGTTG+TGG + chr4_4:3033530-3033549 Msa0664060:CDS 25.0%
AATGGAAGTAGTAAGAAAGA+AGG - chr4_4:3032190-3032209 None:intergenic 30.0%
TACTTTATCATTGCAAATGG+GGG + chr4_4:3032303-3032322 Msa0664060:CDS 30.0%
! AACCATCAATTTGGTTCAAA+GGG + chr4_4:3032372-3032391 Msa0664060:CDS 30.0%
!! TGATGGGTGTTTTCTATAAA+GGG - chr4_4:3032559-3032578 None:intergenic 30.0%
!!! ATGATGGGTGTTTTCTATAA+AGG - chr4_4:3032560-3032579 None:intergenic 30.0%
TTATAGAAAACACCCATCAT+TGG + chr4_4:3032560-3032579 Msa0664060:intron 30.0%
ACAGATAAGAAACCAATGAT+GGG - chr4_4:3032575-3032594 None:intergenic 30.0%
CTCATAGTTTACTGATAAGT+GGG - chr4_4:3032749-3032768 None:intergenic 30.0%
ACTCATAGTTTACTGATAAG+TGG - chr4_4:3032750-3032769 None:intergenic 30.0%
! GTTCATAAGTGCTATTATCT+TGG + chr4_4:3032907-3032926 Msa0664060:intron 30.0%
!! GAATTTTTAGGAAAGGAGAA+AGG + chr4_4:3032969-3032988 Msa0664060:intron 30.0%
GCTCAAAGAGGAAAATTAAT+TGG + chr4_4:3033027-3033046 Msa0664060:CDS 30.0%
TACATTGTGACAATAGGATT+GGG + chr4_4:3033206-3033225 Msa0664060:CDS 30.0%
TGACTATAACATGACATACA+AGG - chr4_4:3033293-3033312 None:intergenic 30.0%
ATGTCATGTTATAGTCAACA+AGG + chr4_4:3033296-3033315 Msa0664060:CDS 30.0%
TAGTAATGAGTTATAGGAAG+AGG - chr4_4:3033345-3033364 None:intergenic 30.0%
TACACTGTTAATTATGGTGA+TGG + chr4_4:3033449-3033468 Msa0664060:CDS 30.0%
!!! ATTTTGTTTTTGGTTGTGGT+AGG + chr4_4:3033534-3033553 Msa0664060:CDS 30.0%
AGGAACAACAAAGGTTTATT+TGG + chr4_4:3033554-3033573 Msa0664060:CDS 30.0%
AACAACAAAGGTTTATTTGG+CGG + chr4_4:3033557-3033576 Msa0664060:CDS 30.0%
! TGGTTTGAGATATCATTGAT+AGG - chr4_4:3033616-3033635 None:intergenic 30.0%
TCTCAAACCAATACTACATT+TGG + chr4_4:3033626-3033645 Msa0664060:CDS 30.0%
!! TTTAAAGCATTGTAGAGTGA+TGG - chr4_4:3033905-3033924 None:intergenic 30.0%
ATCACTCTACAATGCTTTAA+AGG + chr4_4:3033904-3033923 Msa0664060:CDS 30.0%
!!! GAGTTTTTGAAACAGTTTTC+TGG + chr4_4:3033929-3033948 Msa0664060:CDS 30.0%
ATACATGTTTCAATCTGACT+GGG + chr4_4:3033984-3034003 Msa0664060:CDS 30.0%
TCAAAATGCATACTTAAGGT+AGG - chr4_4:3034028-3034047 None:intergenic 30.0%
GTTCTCAAAATGCATACTTA+AGG - chr4_4:3034032-3034051 None:intergenic 30.0%
! CAAACTTGTGAAACATCTTT+TGG - chr4_4:3034097-3034116 None:intergenic 30.0%
! AGATGTTTCACAAGTTTGTT+TGG + chr4_4:3034099-3034118 Msa0664060:CDS 30.0%
TCTTTCTGATGAAAATGACA+TGG + chr4_4:3034132-3034151 Msa0664060:CDS 30.0%
! AAATCCAATTTTGGACTGTT+TGG - chr4_4:3034206-3034225 None:intergenic 30.0%
! ATTTTCGTAGTAGGAATAAC+TGG - chr4_4:3034341-3034360 None:intergenic 30.0%
!! CTATGTTTAGCCTTATAACA+TGG + chr4_4:3034377-3034396 Msa0664060:three_prime_UTR 30.0%
TATGCTAGTACCATGTTATA+AGG - chr4_4:3034390-3034409 None:intergenic 30.0%
ACATTCTAACGACTAATGAA+GGG - chr4_4:3034526-3034545 None:intergenic 30.0%
TACATTCTAACGACTAATGA+AGG - chr4_4:3034527-3034546 None:intergenic 30.0%
TTGTGCATGAGGAATTATTG+GGG - chr4_4:3032065-3032084 None:intergenic 35.0%
CTTGTGCATGAGGAATTATT+GGG - chr4_4:3032066-3032085 None:intergenic 35.0%
ACTTGTGCATGAGGAATTAT+TGG - chr4_4:3032067-3032086 None:intergenic 35.0%
AATAATTCCTCATGCACAAG+TGG + chr4_4:3032066-3032085 Msa0664060:five_prime_UTR 35.0%
ATAATTCCTCATGCACAAGT+GGG + chr4_4:3032067-3032086 Msa0664060:five_prime_UTR 35.0%
ATTTGGCATGAGAACAAAAG+AGG - chr4_4:3032112-3032131 None:intergenic 35.0%
TCAAAGTGCAAATGTTGCAA+AGG + chr4_4:3032349-3032368 Msa0664060:CDS 35.0%
TTGCAAAGGAACCATCAATT+TGG + chr4_4:3032363-3032382 Msa0664060:CDS 35.0%
! GAACCATCAATTTGGTTCAA+AGG + chr4_4:3032371-3032390 Msa0664060:CDS 35.0%
AACCCTTTGAACCAAATTGA+TGG - chr4_4:3032377-3032396 None:intergenic 35.0%
TGCTAAACTCACTTGATTCT+GGG - chr4_4:3032407-3032426 None:intergenic 35.0%
GACAGATAAGAAACCAATGA+TGG - chr4_4:3032576-3032595 None:intergenic 35.0%
GTAACCTTACCTTTGAATCA+GGG - chr4_4:3032632-3032651 None:intergenic 35.0%
TGTAACCTTACCTTTGAATC+AGG - chr4_4:3032633-3032652 None:intergenic 35.0%
AACACGCGATATTACAAGTT+CGG + chr4_4:3032675-3032694 Msa0664060:intron 35.0%
ATAGAGGTTATTGCTCAAAG+AGG + chr4_4:3033015-3033034 Msa0664060:CDS 35.0%
! ATCCAAATTCCATTAGCTTC+TGG + chr4_4:3033161-3033180 Msa0664060:CDS 35.0%
TACCAGAAGCTAATGGAATT+TGG - chr4_4:3033166-3033185 None:intergenic 35.0%
CTACATTGTGACAATAGGAT+TGG + chr4_4:3033205-3033224 Msa0664060:CDS 35.0%
ATGACTGTGATAATCGATAC+CGG + chr4_4:3033239-3033258 Msa0664060:CDS 35.0%
ATGACATACAAGGATCACAT+TGG - chr4_4:3033283-3033302 None:intergenic 35.0%
TATAGGAAGAGGAGTTAGAA+GGG - chr4_4:3033334-3033353 None:intergenic 35.0%
TTATAGGAAGAGGAGTTAGA+AGG - chr4_4:3033335-3033354 None:intergenic 35.0%
ACAGTGTAGTTACAACTAGA+TGG - chr4_4:3033437-3033456 None:intergenic 35.0%
CTGAAATACCTCCAAAACTA+AGG - chr4_4:3033508-3033527 None:intergenic 35.0%
TCTTCCTAATCCCATTATAC+CGG - chr4_4:3033588-3033607 None:intergenic 35.0%
CAAACCAATACTACATTTGG+AGG + chr4_4:3033629-3033648 Msa0664060:CDS 35.0%
AACTCCTCCAAATGTAGTAT+TGG - chr4_4:3033636-3033655 None:intergenic 35.0%
TGTTTACCAACAACAGATAG+TGG + chr4_4:3033665-3033684 Msa0664060:CDS 35.0%
ACATAAAAGTTTGACAGCTG+TGG - chr4_4:3033776-3033795 None:intergenic 35.0%
! TTTTATGTACTCAACCTCAC+CGG + chr4_4:3033788-3033807 Msa0664060:CDS 35.0%
GCTATACAAGATACAAGCTT+TGG + chr4_4:3033830-3033849 Msa0664060:CDS 35.0%
GATACATGTTTCAATCTGAC+TGG + chr4_4:3033983-3034002 Msa0664060:CDS 35.0%
GAACAATGTTGATCTGAATG+TGG + chr4_4:3034048-3034067 Msa0664060:CDS 35.0%
AAAATGACATGGCCATCATT+GGG + chr4_4:3034143-3034162 Msa0664060:CDS 35.0%
TTGCTGATAATTCCCAATGA+TGG - chr4_4:3034158-3034177 None:intergenic 35.0%
TCATTGGGAATTATCAGCAA+AGG + chr4_4:3034158-3034177 Msa0664060:CDS 35.0%
ATTATCAGCAAAGGAATCAG+AGG + chr4_4:3034167-3034186 Msa0664060:CDS 35.0%
TTATCAGCAAAGGAATCAGA+GGG + chr4_4:3034168-3034187 Msa0664060:CDS 35.0%
AGTCCAAAATTGGATTTGCA+AGG + chr4_4:3034209-3034228 Msa0664060:CDS 35.0%
GTCCAAAATTGGATTTGCAA+GGG + chr4_4:3034210-3034229 Msa0664060:CDS 35.0%
! TTCCCTTGCAAATCCAATTT+TGG - chr4_4:3034215-3034234 None:intergenic 35.0%
GCTATACTAGATGTCTTACA+TGG + chr4_4:3034265-3034284 Msa0664060:three_prime_UTR 35.0%
ACATGGTACTAGCATAAGAA+TGG + chr4_4:3034394-3034413 Msa0664060:three_prime_UTR 35.0%
GCATAAGAATGGCATTTATC+AGG + chr4_4:3034405-3034424 Msa0664060:three_prime_UTR 35.0%
TCCTAGGTATATTGTTGTGT+TGG + chr4_4:3034431-3034450 Msa0664060:three_prime_UTR 35.0%
TAATTCCTCATGCACAAGTG+GGG + chr4_4:3032068-3032087 Msa0664060:five_prime_UTR 40.0%
! AGATTCTGAGTGGTGGAATT+TGG - chr4_4:3032129-3032148 None:intergenic 40.0%
AAAAGAGAGGAGATTCTGAG+TGG - chr4_4:3032139-3032158 None:intergenic 40.0%
TAAACTCACTTGATTCTGGG+AGG - chr4_4:3032404-3032423 None:intergenic 40.0%
CTGCTAAACTCACTTGATTC+TGG - chr4_4:3032408-3032427 None:intergenic 40.0%
GAATAGCAACCCTGATTCAA+AGG + chr4_4:3032620-3032639 Msa0664060:intron 40.0%
TGCTATCATCCTGGAAATGA+AGG + chr4_4:3032992-3033011 Msa0664060:CDS 40.0%
ATCCTGGAAATGAAGGATAG+AGG + chr4_4:3032999-3033018 Msa0664060:CDS 40.0%
AACCTCTATCCTTCATTTCC+AGG - chr4_4:3033004-3033023 None:intergenic 40.0%
ATACCGGAAGTGACTTAACA+TGG + chr4_4:3033255-3033274 Msa0664060:CDS 40.0%
TACCGGAAGTGACTTAACAT+GGG + chr4_4:3033256-3033275 Msa0664060:CDS 40.0%
GAGTTAGAAGGGTTGAAAAC+AGG - chr4_4:3033323-3033342 None:intergenic 40.0%
!! GGTGATGGATCATTTACTGA+TGG + chr4_4:3033464-3033483 Msa0664060:CDS 40.0%
TCATTTACTGATGGAGAGCT+AGG + chr4_4:3033473-3033492 Msa0664060:CDS 40.0%
!! GGTGTTGAACACCTTAGTTT+TGG + chr4_4:3033494-3033513 Msa0664060:CDS 40.0%
!!! GTTGAACACCTTAGTTTTGG+AGG + chr4_4:3033497-3033516 Msa0664060:CDS 40.0%
! GTTTCCGGTATAATGGGATT+AGG + chr4_4:3033581-3033600 Msa0664060:CDS 40.0%
!! GCTTCTGGTTCGTTAGTTAT+AGG + chr4_4:3033689-3033708 Msa0664060:CDS 40.0%
AGTTATAGGTAACGAGTCGT+CGG + chr4_4:3033703-3033722 Msa0664060:CDS 40.0%
TCCAATTGCTTACACCAGTA+TGG + chr4_4:3033742-3033761 Msa0664060:CDS 40.0%
ACCATACTGGTGTAAGCAAT+TGG - chr4_4:3033746-3033765 None:intergenic 40.0%
! CAAGATACAAGCTTTGGCAA+CGG + chr4_4:3033836-3033855 Msa0664060:CDS 40.0%
!! CATTCTAATTGATTCGGGGA+CGG + chr4_4:3033862-3033881 Msa0664060:CDS 40.0%
! GTATCCAAAATTGAAAGCGC+TGG - chr4_4:3033968-3033987 None:intergenic 40.0%
TTTCAATCTGACTGGGATTG+AGG + chr4_4:3033991-3034010 Msa0664060:CDS 40.0%
GAAAATGACATGGCCATCAT+TGG + chr4_4:3034142-3034161 Msa0664060:CDS 40.0%
GATGCCAAACAGTCCAAAAT+TGG + chr4_4:3034199-3034218 Msa0664060:CDS 40.0%
! GGCATTTATCAGGTTTTCCT+AGG + chr4_4:3034415-3034434 Msa0664060:three_prime_UTR 40.0%
GCCAACACAACAATATACCT+AGG - chr4_4:3034435-3034454 None:intergenic 40.0%
GAGTGAGAGAGGAAAAAGAG+AGG - chr4_4:3032152-3032171 None:intergenic 45.0%
TTTGAGAGTGAGAGTGAGAG+AGG - chr4_4:3032163-3032182 None:intergenic 45.0%
GCAACCCTGATTCAAAGGTA+AGG + chr4_4:3032625-3032644 Msa0664060:intron 45.0%
GCGTTCGTTCAATGCAAAAC+AGG + chr4_4:3033090-3033109 Msa0664060:CDS 45.0%
GCAAAACAGGATTCGAGCAA+AGG + chr4_4:3033103-3033122 Msa0664060:CDS 45.0%
GACCCATGTTAAGTCACTTC+CGG - chr4_4:3033261-3033280 None:intergenic 45.0%
GGTTGTGGTAGGAACAACAA+AGG + chr4_4:3033545-3033564 Msa0664060:CDS 45.0%
GGTTTATTTGGCGGAGTTTC+CGG + chr4_4:3033566-3033585 Msa0664060:CDS 45.0%
GAAGCTCCACTATCTGTTGT+TGG - chr4_4:3033674-3033693 None:intergenic 45.0%
!! ACAACAGATAGTGGAGCTTC+TGG + chr4_4:3033674-3033693 Msa0664060:CDS 45.0%
CTGTGGATTCGAAACCATAC+TGG - chr4_4:3033759-3033778 None:intergenic 45.0%
CGGCGGCATTCTAATTGATT+CGG + chr4_4:3033856-3033875 Msa0664060:CDS 45.0%
! GGCGGCATTCTAATTGATTC+GGG + chr4_4:3033857-3033876 Msa0664060:CDS 45.0%
!! GCGGCATTCTAATTGATTCG+GGG + chr4_4:3033858-3033877 Msa0664060:CDS 45.0%
! TGCACCAGCGCTTTCAATTT+TGG + chr4_4:3033961-3033980 Msa0664060:CDS 45.0%
GATCTGAATGTGGATGCAGT+TGG + chr4_4:3034058-3034077 Msa0664060:CDS 45.0%
GTATACCCCACTTGTGCATG+AGG - chr4_4:3032076-3032095 None:intergenic 50.0%
AGAGAGGAGATTCTGAGTGG+TGG - chr4_4:3032136-3032155 None:intergenic 50.0%
CGCTCAAGCTGGCGAAAAAA+AGG - chr4_4:3032721-3032740 None:intergenic 50.0%
!! GGAGAAAGGTGCTATCATCC+TGG + chr4_4:3032983-3033002 Msa0664060:CDS 50.0%
AGGATTCGAGCAAAGGTCAC+TGG + chr4_4:3033110-3033129 Msa0664060:CDS 50.0%
TGGCGGAGTTTCCGGTATAA+TGG + chr4_4:3033574-3033593 Msa0664060:CDS 50.0%
GGCGGAGTTTCCGGTATAAT+GGG + chr4_4:3033575-3033594 Msa0664060:CDS 50.0%
AACCTCACCGGCATAGATGT+TGG + chr4_4:3033800-3033819 Msa0664060:CDS 50.0%
CACACCACCAACATCTATGC+CGG - chr4_4:3033810-3033829 None:intergenic 50.0%
! GATACAAGCTTTGGCAACGG+CGG + chr4_4:3033839-3033858 Msa0664060:CDS 50.0%
!! TTGAAAGCGCTGGTGCAGTA+GGG - chr4_4:3033958-3033977 None:intergenic 50.0%
!! ATTGAAAGCGCTGGTGCAGT+AGG - chr4_4:3033959-3033978 None:intergenic 50.0%
CACCAACATCTATGCCGGTG+AGG - chr4_4:3033805-3033824 None:intergenic 55.0%
CTCACCGGCATAGATGTTGG+TGG + chr4_4:3033803-3033822 Msa0664060:CDS 55.0%
!! CGGCATAGATGTTGGTGGTG+TGG + chr4_4:3033808-3033827 Msa0664060:CDS 55.0%
AGTGGGCAGTTCGCTCAAGC+TGG - chr4_4:3032732-3032751 None:intergenic 60.0%
GGGGACGGTGATCACGAGAC+TGG + chr4_4:3033877-3033896 Msa0664060:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 3032022 3034547 3032022 ID=Msa0664060;Name=Msa0664060
chr4_4 mRNA 3032022 3034547 3032022 ID=Msa0664060-mRNA-1;Parent=Msa0664060;Name=Msa0664060-mRNA-1;_AED=0.00;_eAED=0.00;_QI=101|1|1|1|1|1|2|295|521
chr4_4 exon 3032022 3032414 3032022 ID=Msa0664060-mRNA-1:exon:873;Parent=Msa0664060-mRNA-1
chr4_4 exon 3032979 3034547 3032979 ID=Msa0664060-mRNA-1:exon:874;Parent=Msa0664060-mRNA-1
chr4_4 five_prime_UTR 3032022 3032122 3032022 ID=Msa0664060-mRNA-1:five_prime_utr;Parent=Msa0664060-mRNA-1
chr4_4 CDS 3032123 3032414 3032123 ID=Msa0664060-mRNA-1:cds;Parent=Msa0664060-mRNA-1
chr4_4 CDS 3032979 3034252 3032979 ID=Msa0664060-mRNA-1:cds;Parent=Msa0664060-mRNA-1
chr4_4 three_prime_UTR 3034253 3034547 3034253 ID=Msa0664060-mRNA-1:three_prime_utr;Parent=Msa0664060-mRNA-1
Gene Sequence

>Msa0664060

ATGCCAAATTCCACCACTCAGAATCTCCTCTCTTTTTCCTCTCTCACTCTCACTCTCAAATGTACCTTCTTTCTTACTACTTCCATTAGAATTTTTCTCTTTTTCTCTTACTCTTTTCACAAATTCATGGCTTTCAACATAGCTACTATGTTGCCATTTTTTCTTTCTTTTGTTTTTCTTTACTTTATCATTGCAAATGGGGGTTGTGAACTTGAAGAGAAGATGTTCAAAGTGCAAATGTTGCAAAGGAACCATCAATTTGGTTCAAAGGGTTGCATCCTCCCAGAATCAAGAAAGGAGAAAGGTGCTATCATCCTGGAAATGAAGGATAGAGGTTATTGCTCAAAGAGGAAAATTAATTGGAACAGAAAGCTTCAGAAACAGTTAATATTTGATGATCTTCGCGTTCGTTCAATGCAAAACAGGATTCGAGCAAAGGTCACTGGTCATAATAGTTCAGAACAATCTTCAGAAATCCAAATTCCATTAGCTTCTGGTATAAATTTGGAGACTTTAAACTACATTGTGACAATAGGATTGGGTAATCAGAACATGACTGTGATAATCGATACCGGAAGTGACTTAACATGGGTCCAATGTGATCCTTGTATGTCATGTTATAGTCAACAAGGACCTGTTTTCAACCCTTCTAACTCCTCTTCCTATAACTCATTACTATGCAATTCATCAACATGCCAAAATCTTCAATTTACTACAGGAAATACAGAAGCATGTGAAAGTAATAATCCATCTAGTTGTAACTACACTGTTAATTATGGTGATGGATCATTTACTGATGGAGAGCTAGGTGTTGAACACCTTAGTTTTGGAGGTATTTCAGTTAGTAATTTTGTTTTTGGTTGTGGTAGGAACAACAAAGGTTTATTTGGCGGAGTTTCCGGTATAATGGGATTAGGAAGAAGTAACCTATCAATGATATCTCAAACCAATACTACATTTGGAGGAGTTTTCTCATACTGTTTACCAACAACAGATAGTGGAGCTTCTGGTTCGTTAGTTATAGGTAACGAGTCGTCGGTTTTCAAGAATCTTACTCCAATTGCTTACACCAGTATGGTTTCGAATCCACAGCTGTCAAACTTTTATGTACTCAACCTCACCGGCATAGATGTTGGTGGTGTGGCTATACAAGATACAAGCTTTGGCAACGGCGGCATTCTAATTGATTCGGGGACGGTGATCACGAGACTGGCTCCATCACTCTACAATGCTTTAAAGGCAGAGTTTTTGAAACAGTTTTCTGGTTACCCTACTGCACCAGCGCTTTCAATTTTGGATACATGTTTCAATCTGACTGGGATTGAGGAAGTTAGCATACCTACCTTAAGTATGCATTTTGAGAACAATGTTGATCTGAATGTGGATGCAGTTGGTATATTGTATATGCCAAAAGATGTTTCACAAGTTTGTTTGGCAGTTGCAAGTCTTTCTGATGAAAATGACATGGCCATCATTGGGAATTATCAGCAAAGGAATCAGAGGGTAATATATGATGCCAAACAGTCCAAAATTGGATTTGCAAGGGAAGACTGCAGTTTCATTTGA

Protein sequence

>Msa0664060

MPNSTTQNLLSFSSLTLTLKCTFFLTTSIRIFLFFSYSFHKFMAFNIATMLPFFLSFVFLYFIIANGGCELEEKMFKVQMLQRNHQFGSKGCILPESRKEKGAIILEMKDRGYCSKRKINWNRKLQKQLIFDDLRVRSMQNRIRAKVTGHNSSEQSSEIQIPLASGINLETLNYIVTIGLGNQNMTVIIDTGSDLTWVQCDPCMSCYSQQGPVFNPSNSSSYNSLLCNSSTCQNLQFTTGNTEACESNNPSSCNYTVNYGDGSFTDGELGVEHLSFGGISVSNFVFGCGRNNKGLFGGVSGIMGLGRSNLSMISQTNTTFGGVFSYCLPTTDSGASGSLVIGNESSVFKNLTPIAYTSMVSNPQLSNFYVLNLTGIDVGGVAIQDTSFGNGGILIDSGTVITRLAPSLYNALKAEFLKQFSGYPTAPALSILDTCFNLTGIEEVSIPTLSMHFENNVDLNVDAVGILYMPKDVSQVCLAVASLSDENDMAIIGNYQQRNQRVIYDAKQSKIGFAREDCSFI*