Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0022690 | RHN71890.1 | 41.848 | 184 | 36 | 3 | 1 | 113 | 1 | 184 | 8.51e-34 | 127 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0022690 | sp|Q9SJT8|SRS3_ARATH | 64.583 | 48 | 17 | 0 | 73 | 120 | 3 | 50 | 3.13e-18 | 79.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0022690 | TF | SRS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000200 | Msa0022690 | 0.860813 | 1.589659e-63 | -8.615850e-47 |
| Msa0022690 | Msa0033630 | 0.888763 | 4.422804e-73 | -8.615850e-47 |
| Msa0022690 | Msa1024130 | 0.952828 | 1.041398e-110 | -8.615850e-47 |
| Msa0022690 | Msa1107960 | 0.937576 | 2.767287e-98 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0022690 | MtrunA17_Chr2g0281741 | 41.848 | 184 | 36 | 3 | 1 | 113 | 1 | 184 | 7.83e-38 | 127 |
| Msa0022690 | MtrunA17_Chr4g0023901 | 96.364 | 55 | 2 | 0 | 1 | 55 | 1 | 55 | 1.30e-32 | 109 |
| Msa0022690 | MtrunA17_Chr4g0035591 | 86.792 | 53 | 7 | 0 | 68 | 120 | 9 | 61 | 8.24e-30 | 107 |
| Msa0022690 | MtrunA17_Chr0c01g0489181 | 86.957 | 46 | 6 | 0 | 68 | 113 | 56 | 101 | 1.17e-25 | 94.0 |
| Msa0022690 | MtrunA17_Chr8g0372461 | 50.000 | 60 | 30 | 0 | 61 | 120 | 103 | 162 | 2.48e-18 | 79.3 |
| Msa0022690 | MtrunA17_Chr8g0353111 | 55.932 | 59 | 22 | 1 | 68 | 122 | 113 | 171 | 3.72e-17 | 76.3 |
| Msa0022690 | MtrunA17_Chr3g0142171 | 60.000 | 45 | 18 | 0 | 76 | 120 | 83 | 127 | 6.21e-17 | 75.1 |
| Msa0022690 | MtrunA17_Chr1g0155791 | 50.820 | 61 | 30 | 0 | 60 | 120 | 103 | 163 | 2.17e-16 | 74.3 |
| Msa0022690 | MtrunA17_Chr5g0404781 | 63.415 | 41 | 15 | 0 | 77 | 117 | 98 | 138 | 4.52e-16 | 73.2 |
| Msa0022690 | MtrunA17_Chr5g0441921 | 64.286 | 42 | 15 | 0 | 79 | 120 | 124 | 165 | 9.08e-16 | 72.4 |
| Msa0022690 | MtrunA17_Chr3g0082511 | 56.000 | 50 | 21 | 1 | 79 | 128 | 134 | 182 | 1.63e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0022690 | AT2G21400.3 | 64.583 | 48 | 17 | 0 | 73 | 120 | 4 | 51 | 2.96e-19 | 79.7 |
| Msa0022690 | AT2G21400.1 | 64.583 | 48 | 17 | 0 | 73 | 120 | 3 | 50 | 3.18e-19 | 79.3 |
| Msa0022690 | AT2G21400.2 | 64.583 | 48 | 17 | 0 | 73 | 120 | 4 | 51 | 4.20e-19 | 79.7 |
| Msa0022690 | AT2G21400.4 | 64.583 | 48 | 17 | 0 | 73 | 120 | 3 | 50 | 4.72e-19 | 79.3 |
| Msa0022690 | AT1G75520.1 | 48.438 | 64 | 31 | 1 | 59 | 120 | 103 | 166 | 4.70e-17 | 76.6 |
| Msa0022690 | AT3G51060.1 | 61.364 | 44 | 17 | 0 | 77 | 120 | 142 | 185 | 7.99e-17 | 75.9 |
| Msa0022690 | AT4G36260.1 | 54.717 | 53 | 23 | 1 | 77 | 129 | 92 | 143 | 1.59e-16 | 74.7 |
| Msa0022690 | AT5G33210.2 | 59.091 | 44 | 18 | 0 | 77 | 120 | 15 | 58 | 4.02e-16 | 69.7 |
| Msa0022690 | AT5G66350.3 | 50.877 | 57 | 27 | 1 | 79 | 135 | 120 | 175 | 4.22e-16 | 73.6 |
| Msa0022690 | AT5G66350.2 | 50.877 | 57 | 27 | 1 | 79 | 135 | 120 | 175 | 5.49e-16 | 73.6 |
| Msa0022690 | AT5G66350.1 | 50.877 | 57 | 27 | 1 | 79 | 135 | 120 | 175 | 5.61e-16 | 73.6 |
| Msa0022690 | AT5G33210.1 | 59.091 | 44 | 18 | 0 | 77 | 120 | 50 | 93 | 2.28e-15 | 69.3 |
| Msa0022690 | AT1G19790.2 | 50.000 | 56 | 26 | 1 | 67 | 120 | 105 | 160 | 3.99e-15 | 71.2 |
| Msa0022690 | AT1G19790.1 | 50.000 | 56 | 26 | 1 | 67 | 120 | 105 | 160 | 3.99e-15 | 71.2 |
| Msa0022690 | AT5G12330.3 | 59.524 | 42 | 17 | 0 | 79 | 120 | 112 | 153 | 1.89e-14 | 68.2 |
| Msa0022690 | AT5G12330.4 | 59.524 | 42 | 17 | 0 | 79 | 120 | 199 | 240 | 4.17e-14 | 68.6 |
| Msa0022690 | AT5G12330.1 | 59.524 | 42 | 17 | 0 | 79 | 120 | 112 | 153 | 4.52e-14 | 68.2 |
| Msa0022690 | AT5G12330.2 | 59.524 | 42 | 17 | 0 | 79 | 120 | 112 | 153 | 4.52e-14 | 68.2 |
| Msa0022690 | AT3G54430.1 | 53.191 | 47 | 17 | 1 | 70 | 116 | 37 | 78 | 1.07e-13 | 65.1 |
| Msa0022690 | AT2G18120.1 | 44.828 | 58 | 32 | 0 | 77 | 134 | 70 | 127 | 1.25e-13 | 65.9 |
| Msa0022690 | AT2G18120.2 | 44.828 | 58 | 32 | 0 | 77 | 134 | 70 | 127 | 1.38e-13 | 65.5 |
Find 41 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTGTTTGGTGGAAGTT+GGG | 0.310395 | 1_1:+42630161 | None:intergenic |
| ATTGTTTGTTTGGTGGAAGT+TGG | 0.347178 | 1_1:+42630160 | None:intergenic |
| ATGCACAATCCTTCTTTGAT+TGG | 0.363056 | 1_1:+42628102 | None:intergenic |
| TTCGGTCATGATTGTTTGTT+TGG | 0.366531 | 1_1:+42630150 | None:intergenic |
| TAAGGGTTAGGGTGAAGAGG+TGG | 0.375340 | 1_1:+42630039 | None:intergenic |
| ACCGATCTGGAGTGAATTCA+TGG | 0.400497 | 1_1:+42630211 | None:intergenic |
| GGATTTGAGTTTGCCGTGTT+CGG | 0.412366 | 1_1:+42630132 | None:intergenic |
| GGTGAGGGAAACCGATGGCG+GGG | 0.413789 | 1_1:+42630015 | None:intergenic |
| GATTGCGGCGACGGCGGAGG+AGG | 0.416666 | 1_1:+42630097 | None:intergenic |
| AGGGTGAAGAGGTGGGAAAT+TGG | 0.418104 | 1_1:+42630047 | None:intergenic |
| GGGTGAGGGAAACCGATGGC+GGG | 0.424253 | 1_1:+42630014 | None:intergenic |
| TGTTTGTTTGGTGGAAGTTG+GGG | 0.425035 | 1_1:+42630162 | None:intergenic |
| AACGAAGCCACTCACCGATC+TGG | 0.446314 | 1_1:+42630198 | None:intergenic |
| GGGGTGAGGGAAACCGATGG+CGG | 0.446566 | 1_1:+42630013 | None:intergenic |
| GGGTAAGGGTTAGGGTGAAG+AGG | 0.448412 | 1_1:+42630036 | None:intergenic |
| TCCTGCTGATAGAAAATTAG+TGG | 0.464493 | 1_1:-42628009 | Msa0022690:CDS |
| GTGAGGGAAACCGATGGCGG+GGG | 0.471021 | 1_1:+42630016 | None:intergenic |
| CGGAGGAGGGTGGCCGAAGT+AGG | 0.477759 | 1_1:+42630111 | None:intergenic |
| GGTTGAAAGGATTGCGGCGA+CGG | 0.493819 | 1_1:+42630088 | None:intergenic |
| AAGGATTGCGGCGACGGCGG+AGG | 0.507727 | 1_1:+42630094 | None:intergenic |
| GAATCTTCAATCTCGATACA+TGG | 0.513961 | 1_1:+42627945 | None:intergenic |
| AAGGGTTAGGGTGAAGAGGT+GGG | 0.523980 | 1_1:+42630040 | None:intergenic |
| GCGGCGACGGCGGAGGAGGG+TGG | 0.525558 | 1_1:+42630101 | None:intergenic |
| GTTTGTTTGGTGGAAGTTGG+GGG | 0.531733 | 1_1:+42630163 | None:intergenic |
| GGTCATGATTGTTTGTTTGG+TGG | 0.539968 | 1_1:+42630153 | None:intergenic |
| CTCGTACTGAGGAGGTTGAA+AGG | 0.548056 | 1_1:+42630075 | None:intergenic |
| ATTGCGGCGACGGCGGAGGA+GGG | 0.550016 | 1_1:+42630098 | None:intergenic |
| CTGTGGGAACCAATCAAAGA+AGG | 0.552569 | 1_1:-42628111 | Msa0022690:CDS |
| GTCTAAAATGTCAAGACTGT+GGG | 0.562102 | 1_1:-42628127 | Msa0022690:CDS |
| CAAACAATCATGACCGAACA+CGG | 0.568465 | 1_1:-42630145 | Msa0022690:CDS |
| GGCAAACTCAAATCCTACTT+CGG | 0.572114 | 1_1:-42630124 | Msa0022690:CDS |
| AAGTGCTTCTGATATGTGTA+TGG | 0.578912 | 1_1:+42628036 | None:intergenic |
| TGAAAGGATTGCGGCGACGG+CGG | 0.584093 | 1_1:+42630091 | None:intergenic |
| AAAGATCTGAAATGCATCCA+CGG | 0.607375 | 1_1:-42627983 | Msa0022690:CDS |
| GGTCTAAAATGTCAAGACTG+TGG | 0.611012 | 1_1:-42628128 | Msa0022690:CDS |
| AATTGGAAAGACTCGTACTG+AGG | 0.630700 | 1_1:+42630064 | None:intergenic |
| ATACACATATCAGAAGCACT+TGG | 0.637813 | 1_1:-42628034 | Msa0022690:CDS |
| TCCATGAATTCACTCCAGAT+CGG | 0.641820 | 1_1:-42630212 | Msa0022690:CDS |
| TGGAAAGACTCGTACTGAGG+AGG | 0.658466 | 1_1:+42630067 | None:intergenic |
| TGAGGAGGTTGAAAGGATTG+CGG | 0.659256 | 1_1:+42630082 | None:intergenic |
| ATTCACTCCAGATCGGTGAG+TGG | 0.692086 | 1_1:-42630205 | Msa0022690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAGAAATTTAATGATTT+TGG | - | chr1_1:42628402-42628421 | Msa0022690:intron | 10.0% |
| !!! | TTTAGAAATTTAATGATTTT+GGG | - | chr1_1:42628403-42628422 | Msa0022690:intron | 10.0% |
| !! | ATATAATCTATGATAAATAA+AGG | + | chr1_1:42629415-42629434 | None:intergenic | 10.0% |
| !! | GTATATTTATCTTATTGTAA+TGG | - | chr1_1:42628562-42628581 | Msa0022690:intron | 15.0% |
| !!! | ACTTTTTAAGTTTATATAAG+TGG | + | chr1_1:42628739-42628758 | None:intergenic | 15.0% |
| !! | AAAATTATAAATTTACAGCA+TGG | + | chr1_1:42629795-42629814 | None:intergenic | 15.0% |
| !!! | GAGATTTTGTTATTTTTTGT+TGG | - | chr1_1:42628463-42628482 | Msa0022690:intron | 20.0% |
| !!! | TTTTAAGTTTATATAAGTGG+AGG | + | chr1_1:42628736-42628755 | None:intergenic | 20.0% |
| !!! | ATGTTTTGTAGGAAAATATT+TGG | - | chr1_1:42629038-42629057 | Msa0022690:intron | 20.0% |
| !! | ACATATTATTCCAATACTAA+AGG | + | chr1_1:42629184-42629203 | None:intergenic | 20.0% |
| !! | ACAAAATGGTAAAACAAAAT+TGG | + | chr1_1:42629246-42629265 | None:intergenic | 20.0% |
| !! | AAATGTAGAAAATTTGGATT+TGG | - | chr1_1:42629278-42629297 | Msa0022690:intron | 20.0% |
| !!! | CTATAACATTTAACTTGATA+TGG | + | chr1_1:42629483-42629502 | None:intergenic | 20.0% |
| !! | CATATCAAGTTAAATGTTAT+AGG | - | chr1_1:42629481-42629500 | Msa0022690:intron | 20.0% |
| !! | AATTTAAAAGAATTACCAAC+AGG | + | chr1_1:42629548-42629567 | None:intergenic | 20.0% |
| !! | TTAAGTAGTTAGGAAATTTA+TGG | - | chr1_1:42629662-42629681 | Msa0022690:intron | 20.0% |
| !!! | TTTATGAGTTTAAAACCTTT+TGG | + | chr1_1:42629921-42629940 | None:intergenic | 20.0% |
| ! | TAGTAACCATAACTGTAATA+GGG | + | chr1_1:42628196-42628215 | None:intergenic | 25.0% |
| ! | TTAGTAACCATAACTGTAAT+AGG | + | chr1_1:42628197-42628216 | None:intergenic | 25.0% |
| ! | ACAAAATCTCCAAACAAAAA+GGG | + | chr1_1:42628453-42628472 | None:intergenic | 25.0% |
| ! | AACAAAATCTCCAAACAAAA+AGG | + | chr1_1:42628454-42628473 | None:intergenic | 25.0% |
| ! | GGTTTATACTTATCTAATCT+TGG | - | chr1_1:42628484-42628503 | Msa0022690:intron | 25.0% |
| !!! | GAGTTCTTTTTTGAATTCTT+AGG | - | chr1_1:42628685-42628704 | Msa0022690:intron | 25.0% |
| ! | TATTGTACTTTCAATTATGC+AGG | - | chr1_1:42628819-42628838 | Msa0022690:intron | 25.0% |
| ! | TTTCAATTATGCAGGATTTA+GGG | - | chr1_1:42628827-42628846 | Msa0022690:intron | 25.0% |
| ! | TGCTACTGTTCTATATAATA+AGG | - | chr1_1:42628933-42628952 | Msa0022690:intron | 25.0% |
| !! | TACAATCTATCATTCCTTTT+AGG | - | chr1_1:42629006-42629025 | Msa0022690:intron | 25.0% |
| ! | TAGAAAATTTGGATTTGGAT+TGG | - | chr1_1:42629283-42629302 | Msa0022690:intron | 25.0% |
| ! | TGATTTAAACTAACTTCAGT+TGG | - | chr1_1:42629440-42629459 | Msa0022690:intron | 25.0% |
| ! | ACATGTCAATTTAAGTAGTT+AGG | - | chr1_1:42629652-42629671 | Msa0022690:intron | 25.0% |
| ! | TATAAGGGAAACTAAATTCA+AGG | + | chr1_1:42629760-42629779 | None:intergenic | 25.0% |
| !! | GAATTTAGTTTCCCTTATAA+TGG | - | chr1_1:42629761-42629780 | Msa0022690:intron | 25.0% |
| ! | AAAATGTATTCAACCCAATT+AGG | - | chr1_1:42629977-42629996 | Msa0022690:intron | 25.0% |
| ! | AAATGTATTCAACCCAATTA+GGG | - | chr1_1:42629978-42629997 | Msa0022690:intron | 25.0% |
| !! | TATGGTTACTAAGCTTTTTC+TGG | - | chr1_1:42628205-42628224 | Msa0022690:intron | 30.0% |
| AAGAAAGAAAAGCAAGAAGA+AGG | + | chr1_1:42628238-42628257 | None:intergenic | 30.0% | |
| ! | TTATAGCTTATTTCTTCCAC+TGG | - | chr1_1:42628265-42628284 | Msa0022690:intron | 30.0% |
| ! | TATAGCTTATTTCTTCCACT+GGG | - | chr1_1:42628266-42628285 | Msa0022690:intron | 30.0% |
| GTTTATATAAGTGGAGGAAT+TGG | + | chr1_1:42628730-42628749 | None:intergenic | 30.0% | |
| ATAGAACTTTCTAAGTCAGA+AGG | + | chr1_1:42628802-42628821 | None:intergenic | 30.0% | |
| CTTTCAATTATGCAGGATTT+AGG | - | chr1_1:42628826-42628845 | Msa0022690:intron | 30.0% | |
| AAGGAATGATAGATTGTACT+TGG | + | chr1_1:42629004-42629023 | None:intergenic | 30.0% | |
| !! | ATCTATCATTCCTTTTAGGT+TGG | - | chr1_1:42629010-42629029 | Msa0022690:intron | 30.0% |
| AACATTATAGCCAACCTAAA+AGG | + | chr1_1:42629023-42629042 | None:intergenic | 30.0% | |
| ! | TGATTGACACTTGAGTATTT+TGG | - | chr1_1:42629072-42629091 | Msa0022690:intron | 30.0% |
| GAGAAAGATTTGAAAAAGAG+AGG | - | chr1_1:42629094-42629113 | Msa0022690:intron | 30.0% | |
| GACTGATAAGTATTAGAACT+TGG | - | chr1_1:42629127-42629146 | Msa0022690:intron | 30.0% | |
| TTGGAAAGTGACAACATAAA+AGG | + | chr1_1:42629227-42629246 | None:intergenic | 30.0% | |
| GGTGTCAAATGTAGAAAATT+TGG | - | chr1_1:42629272-42629291 | Msa0022690:intron | 30.0% | |
| AATTGAGCATAGAGAAACAA+AGG | + | chr1_1:42629512-42629531 | None:intergenic | 30.0% | |
| TGAGATGCATATATAACCAT+TGG | + | chr1_1:42629624-42629643 | None:intergenic | 30.0% | |
| TACTATATCCTCTATGTGAT+GGG | + | chr1_1:42629882-42629901 | None:intergenic | 30.0% | |
| ATACTATATCCTCTATGTGA+TGG | + | chr1_1:42629883-42629902 | None:intergenic | 30.0% | |
| !! | TTTAAAACCTTTTGGTCGTA+TGG | + | chr1_1:42629913-42629932 | None:intergenic | 30.0% |
| AATGTATTCAACCCAATTAG+GGG | - | chr1_1:42629979-42629998 | Msa0022690:intron | 30.0% | |
| ! | TTGTTTGTTTGGTGGAAGTT+GGG | + | chr1_1:42627989-42628008 | None:intergenic | 35.0% |
| ! | ATTGTTTGTTTGGTGGAAGT+TGG | + | chr1_1:42627990-42628009 | None:intergenic | 35.0% |
| TTCGGTCATGATTGTTTGTT+TGG | + | chr1_1:42628000-42628019 | None:intergenic | 35.0% | |
| TAACCATAACTGTAATAGGG+AGG | + | chr1_1:42628193-42628212 | None:intergenic | 35.0% | |
| !!! | TATTTTGATGAGCTCTGTGA+CGG | - | chr1_1:42628370-42628389 | Msa0022690:intron | 35.0% |
| ! | ATGCATCTTCCCTTTTTGTT+TGG | - | chr1_1:42628441-42628460 | Msa0022690:intron | 35.0% |
| CCAAGATATCAACAACAAAG+AGG | + | chr1_1:42628540-42628559 | None:intergenic | 35.0% | |
| !! | CCTCTTTGTTGTTGATATCT+TGG | - | chr1_1:42628537-42628556 | Msa0022690:intron | 35.0% |
| !! | GGTTGGCTATAATGTTTTGT+AGG | - | chr1_1:42629027-42629046 | Msa0022690:intron | 35.0% |
| TTAGAACTTGGAACGAGATT+TGG | - | chr1_1:42629139-42629158 | Msa0022690:intron | 35.0% | |
| CAGTTCATCACCTTTAGTAT+TGG | - | chr1_1:42629171-42629190 | Msa0022690:intron | 35.0% | |
| AAGTGACAACATAAAAGGCA+TGG | + | chr1_1:42629222-42629241 | None:intergenic | 35.0% | |
| ! | GTTTTACCATTTTGTGCAGA+AGG | - | chr1_1:42629251-42629270 | Msa0022690:intron | 35.0% |
| AACTTCAGTTGGATCATGTA+AGG | - | chr1_1:42629451-42629470 | Msa0022690:intron | 35.0% | |
| TTGACTCAAATATCTCCTGT+TGG | - | chr1_1:42629530-42629549 | Msa0022690:intron | 35.0% | |
| CTTTGTCAGTTACAAACCAA+TGG | - | chr1_1:42629605-42629624 | Msa0022690:intron | 35.0% | |
| CCAATTACACAGTTATCGTA+CGG | - | chr1_1:42629691-42629710 | Msa0022690:intron | 35.0% | |
| ! | CTTTTATTCCCATCACATAG+AGG | - | chr1_1:42629871-42629890 | Msa0022690:intron | 35.0% |
| ATGTATTCAACCCAATTAGG+GGG | - | chr1_1:42629980-42629999 | Msa0022690:intron | 35.0% | |
| ! | GTCTAAAATGTCAAGACTGT+GGG | - | chr1_1:42630020-42630039 | Msa0022690:intron | 35.0% |
| ATGCACAATCCTTCTTTGAT+TGG | + | chr1_1:42630048-42630067 | None:intergenic | 35.0% | |
| AAGTGCTTCTGATATGTGTA+TGG | + | chr1_1:42630114-42630133 | None:intergenic | 35.0% | |
| !! | ATACACATATCAGAAGCACT+TGG | - | chr1_1:42630113-42630132 | Msa0022690:CDS | 35.0% |
| TCCTGCTGATAGAAAATTAG+TGG | - | chr1_1:42630138-42630157 | Msa0022690:CDS | 35.0% | |
| ! | TCCACTAATTTTCTATCAGC+AGG | + | chr1_1:42630142-42630161 | None:intergenic | 35.0% |
| ! | AAAGATCTGAAATGCATCCA+CGG | - | chr1_1:42630164-42630183 | Msa0022690:CDS | 35.0% |
| ! | ATCTCGATACATGGCATTTT+AGG | + | chr1_1:42630196-42630215 | None:intergenic | 35.0% |
| GAATCTTCAATCTCGATACA+TGG | + | chr1_1:42630205-42630224 | None:intergenic | 35.0% | |
| ! | TGTTTGTTTGGTGGAAGTTG+GGG | + | chr1_1:42627988-42628007 | None:intergenic | 40.0% |
| GGTCATGATTGTTTGTTTGG+TGG | + | chr1_1:42627997-42628016 | None:intergenic | 40.0% | |
| CAAACAATCATGACCGAACA+CGG | - | chr1_1:42628002-42628021 | Msa0022690:CDS | 40.0% | |
| GGCAAACTCAAATCCTACTT+CGG | - | chr1_1:42628023-42628042 | Msa0022690:CDS | 40.0% | |
| AATTGGAAAGACTCGTACTG+AGG | + | chr1_1:42628086-42628105 | None:intergenic | 40.0% | |
| ATAACTGTAATAGGGAGGAG+GGG | + | chr1_1:42628188-42628207 | None:intergenic | 40.0% | |
| CATAACTGTAATAGGGAGGA+GGG | + | chr1_1:42628189-42628208 | None:intergenic | 40.0% | |
| AGCTACAAAACAAAACCCAG+TGG | + | chr1_1:42628284-42628303 | None:intergenic | 40.0% | |
| !! | ATTTTGATGAGCTCTGTGAC+GGG | - | chr1_1:42628371-42628390 | Msa0022690:intron | 40.0% |
| GTACCTTTGATGTAGTTGTG+TGG | - | chr1_1:42628955-42628974 | Msa0022690:intron | 40.0% | |
| GTACCACACAACTACATCAA+AGG | + | chr1_1:42628961-42628980 | None:intergenic | 40.0% | |
| GGACACAAACAGAGTACAAA+AGG | + | chr1_1:42628983-42629002 | None:intergenic | 40.0% | |
| TTGACACCTTCTGCACAAAA+TGG | + | chr1_1:42629260-42629279 | None:intergenic | 40.0% | |
| TGAGCATAGAGAAACAAAGG+AGG | + | chr1_1:42629509-42629528 | None:intergenic | 40.0% | |
| CCGTACGATAACTGTGTAAT+TGG | + | chr1_1:42629694-42629713 | None:intergenic | 40.0% | |
| TGGCAAAGCAGCCATTATAA+GGG | + | chr1_1:42629775-42629794 | None:intergenic | 40.0% | |
| ATGGCAAAGCAGCCATTATA+AGG | + | chr1_1:42629776-42629795 | None:intergenic | 40.0% | |
| AGTAACACCATACGACCAAA+AGG | - | chr1_1:42629903-42629922 | Msa0022690:intron | 40.0% | |
| ! | GGTCTAAAATGTCAAGACTG+TGG | - | chr1_1:42630019-42630038 | Msa0022690:intron | 40.0% |
| ! | GTTTGTTTGGTGGAAGTTGG+GGG | + | chr1_1:42627987-42628006 | None:intergenic | 45.0% |
| ! | GGATTTGAGTTTGCCGTGTT+CGG | + | chr1_1:42628018-42628037 | None:intergenic | 45.0% |
| TGAGGAGGTTGAAAGGATTG+CGG | + | chr1_1:42628068-42628087 | None:intergenic | 45.0% | |
| CCATAACTGTAATAGGGAGG+AGG | + | chr1_1:42628190-42628209 | None:intergenic | 45.0% | |
| CCTCCTCCCTATTACAGTTA+TGG | - | chr1_1:42628187-42628206 | Msa0022690:intron | 45.0% | |
| CACTTCTTCTCCCCCTAATT+GGG | + | chr1_1:42629993-42630012 | None:intergenic | 45.0% | |
| ACACTTCTTCTCCCCCTAAT+TGG | + | chr1_1:42629994-42630013 | None:intergenic | 45.0% | |
| !! | AGGGGGAGAAGAAGTGTTAA+AGG | - | chr1_1:42629997-42630016 | Msa0022690:intron | 45.0% |
| !! | GGGGGAGAAGAAGTGTTAAA+GGG | - | chr1_1:42629998-42630017 | Msa0022690:intron | 45.0% |
| CTGTGGGAACCAATCAAAGA+AGG | - | chr1_1:42630036-42630055 | Msa0022690:CDS | 45.0% | |
| ATTCACTCCAGATCGGTGAG+TGG | - | chr1_1:42627942-42627961 | Msa0022690:CDS | 50.0% | |
| TTTGGTGGAAGTTGGGGGTT+AGG | + | chr1_1:42627982-42628001 | None:intergenic | 50.0% | |
| CTCGTACTGAGGAGGTTGAA+AGG | + | chr1_1:42628075-42628094 | None:intergenic | 50.0% | |
| TGGAAAGACTCGTACTGAGG+AGG | + | chr1_1:42628083-42628102 | None:intergenic | 50.0% | |
| AGGGTGAAGAGGTGGGAAAT+TGG | + | chr1_1:42628103-42628122 | None:intergenic | 50.0% | |
| AAGGGTTAGGGTGAAGAGGT+GGG | + | chr1_1:42628110-42628129 | None:intergenic | 50.0% | |
| TAAGGGTTAGGGTGAAGAGG+TGG | + | chr1_1:42628111-42628130 | None:intergenic | 50.0% | |
| AACGAAGCCACTCACCGATC+TGG | + | chr1_1:42627952-42627971 | None:intergenic | 55.0% | |
| GTGGAAGTTGGGGGTTAGGA+GGG | + | chr1_1:42627978-42627997 | None:intergenic | 55.0% | |
| GGTTGAAAGGATTGCGGCGA+CGG | + | chr1_1:42628062-42628081 | None:intergenic | 55.0% | |
| GGGTAAGGGTTAGGGTGAAG+AGG | + | chr1_1:42628114-42628133 | None:intergenic | 55.0% | |
| ACTGTAATAGGGAGGAGGGG+CGG | + | chr1_1:42628185-42628204 | None:intergenic | 55.0% | |
| !!! | GGCATTTTAGGACTCTGCCG+TGG | + | chr1_1:42630184-42630203 | None:intergenic | 55.0% |
| GGTGGAAGTTGGGGGTTAGG+AGG | + | chr1_1:42627979-42627998 | None:intergenic | 60.0% | |
| TGAAAGGATTGCGGCGACGG+CGG | + | chr1_1:42628059-42628078 | None:intergenic | 60.0% | |
| !! | GATGGCGGGGGTAAGGGTTA+GGG | + | chr1_1:42628122-42628141 | None:intergenic | 60.0% |
| CTAACCCTTACCCCCGCCAT+CGG | - | chr1_1:42628121-42628140 | Msa0022690:CDS | 60.0% | |
| !! | GAAACCGATGGCGGGGGTAA+GGG | + | chr1_1:42628128-42628147 | None:intergenic | 60.0% |
| TAATAGGGAGGAGGGGCGGA+GGG | + | chr1_1:42628181-42628200 | None:intergenic | 60.0% | |
| !! | CGATGGCGGGGGTAAGGGTT+AGG | + | chr1_1:42628123-42628142 | None:intergenic | 65.0% |
| !! | GGAAACCGATGGCGGGGGTA+AGG | + | chr1_1:42628129-42628148 | None:intergenic | 65.0% |
| ! | GTGAGGGAAACCGATGGCGG+GGG | + | chr1_1:42628134-42628153 | None:intergenic | 65.0% |
| GGTGAGGGAAACCGATGGCG+GGG | + | chr1_1:42628135-42628154 | None:intergenic | 65.0% | |
| GGGTGAGGGAAACCGATGGC+GGG | + | chr1_1:42628136-42628155 | None:intergenic | 65.0% | |
| GGGGTGAGGGAAACCGATGG+CGG | + | chr1_1:42628137-42628156 | None:intergenic | 65.0% | |
| GTCGGGGTGAGGGAAACCGA+TGG | + | chr1_1:42628140-42628159 | None:intergenic | 65.0% | |
| TCGGATCCAGGAGGACGGTC+GGG | + | chr1_1:42628157-42628176 | None:intergenic | 65.0% | |
| GTCGGATCCAGGAGGACGGT+CGG | + | chr1_1:42628158-42628177 | None:intergenic | 65.0% | |
| AGGGGTCGGATCCAGGAGGA+CGG | + | chr1_1:42628162-42628181 | None:intergenic | 65.0% | |
| AATAGGGAGGAGGGGCGGAG+GGG | + | chr1_1:42628180-42628199 | None:intergenic | 65.0% | |
| GTAATAGGGAGGAGGGGCGG+AGG | + | chr1_1:42628182-42628201 | None:intergenic | 65.0% | |
| CGGAGGAGGGTGGCCGAAGT+AGG | + | chr1_1:42628039-42628058 | None:intergenic | 70.0% | |
| ATTGCGGCGACGGCGGAGGA+GGG | + | chr1_1:42628052-42628071 | None:intergenic | 70.0% | |
| AAGGATTGCGGCGACGGCGG+AGG | + | chr1_1:42628056-42628075 | None:intergenic | 70.0% | |
| CAGGAGGACGGTCGGGGTGA+GGG | + | chr1_1:42628150-42628169 | None:intergenic | 70.0% | |
| CGGATCCAGGAGGACGGTCG+GGG | + | chr1_1:42628156-42628175 | None:intergenic | 70.0% | |
| GATTGCGGCGACGGCGGAGG+AGG | + | chr1_1:42628053-42628072 | None:intergenic | 75.0% | |
| CCAGGAGGACGGTCGGGGTG+AGG | + | chr1_1:42628151-42628170 | None:intergenic | 75.0% | |
| CCTCACCCCGACCGTCCTCC+TGG | - | chr1_1:42628148-42628167 | Msa0022690:CDS | 75.0% | |
| GCGGAGGGGTCGGATCCAGG+AGG | + | chr1_1:42628166-42628185 | None:intergenic | 75.0% | |
| ! | GGGGCGGAGGGGTCGGATCC+AGG | + | chr1_1:42628169-42628188 | None:intergenic | 80.0% |
| ! | GGGAGGAGGGGCGGAGGGGT+CGG | + | chr1_1:42628176-42628195 | None:intergenic | 80.0% |
| ! | GCGGCGACGGCGGAGGAGGG+TGG | + | chr1_1:42628049-42628068 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 42627938 | 42630231 | 42627938 | ID=Msa0022690;Name=Msa0022690 |
| chr1_1 | mRNA | 42627938 | 42630231 | 42627938 | ID=Msa0022690-mRNA-1;Parent=Msa0022690;Name=Msa0022690-mRNA-1;_AED=0.39;_eAED=0.59;_QI=0|0|0|1|0|0|2|0|145 |
| chr1_1 | exon | 42630027 | 42630231 | 42630027 | ID=Msa0022690-mRNA-1:exon:12472;Parent=Msa0022690-mRNA-1 |
| chr1_1 | exon | 42627938 | 42628170 | 42627938 | ID=Msa0022690-mRNA-1:exon:12471;Parent=Msa0022690-mRNA-1 |
| chr1_1 | CDS | 42630027 | 42630231 | 42630027 | ID=Msa0022690-mRNA-1:cds;Parent=Msa0022690-mRNA-1 |
| chr1_1 | CDS | 42627938 | 42628170 | 42627938 | ID=Msa0022690-mRNA-1:cds;Parent=Msa0022690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
