AlfalfaGEDB | Msa0033630

M. sativa cultivar zhongmu-4 / Msa0033630

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000200	Msa0033630	0.842537	2.433857e-58	-8.615850e-47
Msa0006610	Msa0033630	0.848311	6.645065e-60	-8.615850e-47
Msa0022690	Msa0033630	0.888763	4.422804e-73	-8.615850e-47
Msa0033630	Msa1024130	0.902734	7.160131e-79	-8.615850e-47
Msa0033630	Msa1107960	0.913036	9.794427e-84	-8.615850e-47
Msa0033630	Msa1140180	0.802449	5.580124e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0033630	MtrunA17_Chr4g0023901	96.364	55	2	0	1	55	1	55	1.09e-32	107
Msa0033630	MtrunA17_Chr2g0281741	64.835	91	16	3	1	84	1	82	3.98e-29	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 54 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGAAGCCACTCACCGATC+TGG	0.446314	1_1:-61230260	None:intergenic
AAGGATTGCGGCGACGGCGG+AGG	0.507727	1_1:-61230364	None:intergenic
AAGGGTTAGGGTGAAGAGGT+GGG	0.523980	1_1:-61230418	None:intergenic
AATAGGGAGGAGGGGCGGAG+GGG	0.479253	1_1:-61230488	None:intergenic
AATTGGAAAGACTCGTACTG+AGG	0.630700	1_1:-61230394	None:intergenic
ACCGATCTGGAGTGAATTCA+TGG	0.400497	1_1:-61230247	None:intergenic
ACTGTAATAGGGAGGAGGGG+CGG	0.647217	1_1:-61230493	None:intergenic
AGGGGTCGGATCCAGGAGGA+CGG	0.585435	1_1:-61230470	None:intergenic
AGGGTGAAGAGGTGGGAAAT+TGG	0.418104	1_1:-61230411	None:intergenic
ATAACTGTAATAGGGAGGAG+GGG	0.695524	1_1:-61230496	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGTAGCCATAACTGTAATA+GGG	-	chr1_1:61230507-61230526	None:intergenic	30.0%
TTAGTAGCCATAACTGTAAT+AGG	-	chr1_1:61230508-61230527	None:intergenic	30.0%
TTCGGTCATGATTGTTTGTT+TGG	-	chr1_1:61230311-61230330	None:intergenic	35.0%
GGTCATGATTGTTTGTTTGG+TGG	-	chr1_1:61230308-61230327	None:intergenic	40.0%
CAAACAATCATGACCGAACA+CGG	+	chr1_1:61230313-61230332	Msa0033630:CDS	40.0%
GGCAAACTCAAATCCTACTT+CGG	+	chr1_1:61230334-61230353	Msa0033630:CDS	40.0%
AATTGGAAAGACTCGTACTG+AGG	-	chr1_1:61230397-61230416	None:intergenic	40.0%
ATAACTGTAATAGGGAGGAG+GGG	-	chr1_1:61230499-61230518	None:intergenic	40.0%
CATAACTGTAATAGGGAGGA+GGG	-	chr1_1:61230500-61230519	None:intergenic	40.0%
TAGCCATAACTGTAATAGGG+AGG	-	chr1_1:61230504-61230523	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	61230249	61230527	61230249	ID=Msa0033630;Name=Msa0033630
chr1_1	mRNA	61230249	61230527	61230249	ID=Msa0033630-mRNA-1;Parent=Msa0033630;Name=Msa0033630-mRNA-1;_AED=0.43;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|92
chr1_1	exon	61230249	61230527	61230249	ID=Msa0033630-mRNA-1:exon:19218;Parent=Msa0033630-mRNA-1
chr1_1	CDS	61230249	61230527	61230249	ID=Msa0033630-mRNA-1:cds;Parent=Msa0033630-mRNA-1

Gene Sequence	>Msa0033630 ATGAATTCACTCCAGATCGGTGAGTGGCTTCGTTCTTCCCTCCTAACCCCCAACTTCCACCAAACAAACAATCATGACCGAACACGGCAAACTCAAATCCTACTTCGGCCACCCTCCTCCGCCGTCGCCGCAATCCTTTCAACCTCCTCAGTACGAGTCTTTCCAATTTCCCACCTCTTCACCCTAACCCTTACCCCCGCCATCGGTTTCCCTCACCCCGACCGTCCTCCTGGATCCGACCCCTCCGCCCCTCCTCCCTATTACAGTTATGGCTACTAA
Protein sequence	>Msa0033630 MNSLQIGEWLRSSLLTPNFHQTNNHDRTRQTQILLRPPSSAVAAILSTSSVRVFPISHLFTLTLTPAIGFPHPDRPPGSDPSAPPPYYSYGY*