AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0000200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0000200 MtrunA17_Chr4g0035591 85.246 61 9 0 7 67 1 61 1.29e-34 117
Msa0000200 MtrunA17_Chr0c01g0489181 90.566 53 5 0 8 60 49 101 4.57e-31 105
Msa0000200 MtrunA17_Chr2g0281741 88.095 42 5 0 19 60 143 184 1.88e-22 85.9
Msa0000200 MtrunA17_Chr8g0372461 60.870 46 18 0 22 67 117 162 5.03e-19 79.3
Msa0000200 MtrunA17_Chr5g0404781 63.415 41 15 0 24 64 98 138 3.56e-18 77.0
Msa0000200 MtrunA17_Chr1g0155791 59.091 44 18 0 24 67 120 163 6.53e-18 76.3
Msa0000200 MtrunA17_Chr5g0441921 64.286 42 15 0 26 67 124 165 2.21e-17 74.7
Msa0000200 MtrunA17_Chr3g0142171 60.000 45 18 0 23 67 83 127 4.05e-17 73.6
Msa0000200 MtrunA17_Chr8g0353111 55.932 59 22 1 15 69 113 171 6.12e-17 73.6
Msa0000200 MtrunA17_Chr3g0082511 56.000 50 21 1 26 75 134 182 1.58e-15 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0000200 AT2G21400.3 64.583 48 17 0 20 67 4 51 3.52e-19 77.4
Msa0000200 AT1G75520.1 38.889 90 52 2 5 92 102 190 3.53e-19 80.1
Msa0000200 AT2G21400.1 64.583 48 17 0 20 67 3 50 3.87e-19 77.4
Msa0000200 AT2G21400.2 64.583 48 17 0 20 67 4 51 4.74e-19 77.4
Msa0000200 AT2G21400.4 64.583 48 17 0 20 67 3 50 4.75e-19 77.4
Msa0000200 AT4G36260.1 54.717 53 23 1 24 76 92 143 2.15e-18 77.8
Msa0000200 AT3G51060.1 61.364 44 17 0 24 67 142 185 2.79e-18 77.8
Msa0000200 AT5G66350.3 50.877 57 27 1 26 82 120 175 3.98e-18 77.0
Msa0000200 AT5G66350.2 50.877 57 27 1 26 82 120 175 4.53e-18 77.0
Msa0000200 AT5G66350.1 50.877 57 27 1 26 82 120 175 5.12e-18 77.0
Msa0000200 AT5G33210.2 59.091 44 18 0 24 67 15 58 1.30e-16 68.9
Msa0000200 AT1G19790.2 56.818 44 19 0 24 67 117 160 1.40e-16 73.2
Msa0000200 AT1G19790.1 56.818 44 19 0 24 67 117 160 1.40e-16 73.2
Msa0000200 AT5G12330.4 59.524 42 17 0 26 67 199 240 2.10e-16 72.8
Msa0000200 AT5G12330.1 59.524 42 17 0 26 67 112 153 5.52e-16 71.2
Msa0000200 AT5G12330.2 59.524 42 17 0 26 67 112 153 5.52e-16 71.2
Msa0000200 AT5G33210.1 59.091 44 18 0 24 67 50 93 6.61e-16 68.9
Msa0000200 AT5G12330.3 59.524 42 17 0 26 67 112 153 3.00e-14 65.5
Msa0000200 AT2G18120.1 44.828 58 32 0 24 81 70 127 4.11e-14 65.1
Msa0000200 AT2G18120.2 44.828 58 32 0 24 81 70 127 4.31e-14 65.1
Msa0000200 AT3G54430.1 53.191 47 17 1 17 63 37 78 9.39e-14 63.5

Find 78 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATGTATTCAACCCAATT+AGG 0.147775 1_1:+1029093 Msa0000200:CDS
TTAGTAGCCATAACTGTAAT+AGG 0.226353 1_1:-1027310 None:intergenic
AAATGTATTCAACCCAATTA+GGG 0.279004 1_1:+1029094 Msa0000200:CDS
TTGTTTGTTTGGTGGAAGTT+GGG 0.310395 1_1:-1027102 None:intergenic
TAGAGAGGAAGTAAGGTATA+TGG 0.329711 1_1:-1026953 None:intergenic
CCTCACCCCGACCGTCCTCC+TGG 0.346667 1_1:+1027264 Msa0000200:five_prime_UTR
ATTGTTTGTTTGGTGGAAGT+TGG 0.347178 1_1:-1027103 None:intergenic
ATGCACAATCCTTCTTTGAT+TGG 0.363056 1_1:-1029161 None:intergenic
TTTAACTGATTGTTTGTTCA+TGG 0.365867 1_1:-1027024 None:intergenic
TTCGGTCATGATTGTTTGTT+TGG 0.366531 1_1:-1027113 None:intergenic
CCAGGAGGACGGTCGGGGTG+AGG 0.369145 1_1:-1027264 None:intergenic
TTCAAGAGTGTGAGAGAAGA+AGG 0.374278 1_1:-1026994 None:intergenic
TAAGGGTTAGGGTGAAGAGG+TGG 0.375340 1_1:-1027224 None:intergenic
TCGGATCCAGGAGGACGGTC+GGG 0.380838 1_1:-1027270 None:intergenic
GGGGCGGAGGGGTCGGATCC+AGG 0.386026 1_1:-1027282 None:intergenic
ACCGATCTGGAGTGAATTCA+TGG 0.400497 1_1:-1027052 None:intergenic
GGATTTGAGTTTGCCGTGTT+CGG 0.412366 1_1:-1027131 None:intergenic
GGTGAGGGAAACCGATGGCG+GGG 0.413789 1_1:-1027248 None:intergenic
GATTGCGGCGACGGCGGAGG+AGG 0.416666 1_1:-1027166 None:intergenic
AGGGTGAAGAGGTGGGAAAT+TGG 0.418104 1_1:-1027216 None:intergenic
GGGTGAGGGAAACCGATGGC+GGG 0.424253 1_1:-1027249 None:intergenic
TGTTTGTTTGGTGGAAGTTG+GGG 0.425035 1_1:-1027101 None:intergenic
TTAACTGATTGTTTGTTCAT+GGG 0.433388 1_1:-1027023 None:intergenic
CGGATCCAGGAGGACGGTCG+GGG 0.433438 1_1:-1027269 None:intergenic
GTAATAGGGAGGAGGGGCGG+AGG 0.435218 1_1:-1027295 None:intergenic
CCTCCTCCCTATTACAGTTA+TGG 0.441098 1_1:+1027303 Msa0000200:exon
AACGAAGCCACTCACCGATC+TGG 0.446314 1_1:-1027065 None:intergenic
GGGGTGAGGGAAACCGATGG+CGG 0.446566 1_1:-1027250 None:intergenic
GGGTAAGGGTTAGGGTGAAG+AGG 0.448412 1_1:-1027227 None:intergenic
GAGTGTGAGAGAAGAAGGAA+TGG 0.449535 1_1:-1026989 None:intergenic
TCCTGCTGATAGAAAATTAG+TGG 0.464493 1_1:+1029254 Msa0000200:CDS
GGGAGGAGGGGCGGAGGGGT+CGG 0.470296 1_1:-1027289 None:intergenic
TAGTAGCCATAACTGTAATA+GGG 0.470585 1_1:-1027309 None:intergenic
GTGAGGGAAACCGATGGCGG+GGG 0.471021 1_1:-1027247 None:intergenic
TGAGAGAAGAAGGAATGGAT+TGG 0.471341 1_1:-1026984 None:intergenic
CAGGAGGACGGTCGGGGTGA+GGG 0.471785 1_1:-1027263 None:intergenic
ATGATGTTAGAGAGGAAGTA+AGG 0.476915 1_1:-1026960 None:intergenic
CGGAGGAGGGTGGCCGAAGT+AGG 0.477759 1_1:-1027152 None:intergenic
AATAGGGAGGAGGGGCGGAG+GGG 0.479253 1_1:-1027293 None:intergenic
GGTTGAAAGGATTGCGGCGA+CGG 0.493819 1_1:-1027175 None:intergenic
GTCGGATCCAGGAGGACGGT+CGG 0.498258 1_1:-1027271 None:intergenic
TAATAGGGAGGAGGGGCGGA+GGG 0.504583 1_1:-1027294 None:intergenic
AAGGATTGCGGCGACGGCGG+AGG 0.507727 1_1:-1027169 None:intergenic
GAATCTTCAATCTCGATACA+TGG 0.513961 1_1:-1029318 None:intergenic
ATCTGGAGTGAATTCATGGA+TGG 0.514309 1_1:-1027048 None:intergenic
AAGGGTTAGGGTGAAGAGGT+GGG 0.523980 1_1:-1027223 None:intergenic
GCGGCGACGGCGGAGGAGGG+TGG 0.525558 1_1:-1027162 None:intergenic
GTTTGTTTGGTGGAAGTTGG+GGG 0.531733 1_1:-1027100 None:intergenic
GGTCATGATTGTTTGTTTGG+TGG 0.539968 1_1:-1027110 None:intergenic
CATAACTGTAATAGGGAGGA+GGG 0.545322 1_1:-1027302 None:intergenic
CTCGTACTGAGGAGGTTGAA+AGG 0.548056 1_1:-1027188 None:intergenic
ATTGCGGCGACGGCGGAGGA+GGG 0.550016 1_1:-1027165 None:intergenic
CTGTGGGAACCAATCAAAGA+AGG 0.552569 1_1:+1029152 Msa0000200:CDS
CCATAACTGTAATAGGGAGG+AGG 0.554457 1_1:-1027303 None:intergenic
GGATTGGAATGATGTTAGAG+AGG 0.555670 1_1:-1026968 None:intergenic
GTCTAAAATGTCAAGACTGT+GGG 0.562102 1_1:+1029136 Msa0000200:CDS
CAAACAATCATGACCGAACA+CGG 0.568465 1_1:+1027118 Msa0000200:five_prime_UTR
TGGAAAGAGATAGATAGTGT+TGG 0.570539 1_1:-1026903 None:intergenic
GGCAAACTCAAATCCTACTT+CGG 0.572114 1_1:+1027139 Msa0000200:five_prime_UTR
GCGGAGGGGTCGGATCCAGG+AGG 0.575604 1_1:-1027279 None:intergenic
AAGTGCTTCTGATATGTGTA+TGG 0.578912 1_1:-1029227 None:intergenic
TGAAAGGATTGCGGCGACGG+CGG 0.584093 1_1:-1027172 None:intergenic
AGGGGTCGGATCCAGGAGGA+CGG 0.585435 1_1:-1027275 None:intergenic
TCTGGAGTGAATTCATGGAT+GGG 0.606913 1_1:-1027047 None:intergenic
AAAGATCTGAAATGCATCCA+CGG 0.607375 1_1:+1029280 Msa0000200:CDS
GGTCTAAAATGTCAAGACTG+TGG 0.611012 1_1:+1029135 Msa0000200:CDS
AATTGGAAAGACTCGTACTG+AGG 0.630700 1_1:-1027199 None:intergenic
ATACACATATCAGAAGCACT+TGG 0.637813 1_1:+1029229 Msa0000200:CDS
TCCATGAATTCACTCCAGAT+CGG 0.641820 1_1:+1027051 Msa0000200:five_prime_UTR
ATGTATTCAACCCAATTAGG+GGG 0.644158 1_1:+1029096 Msa0000200:CDS
GTCGGGGTGAGGGAAACCGA+TGG 0.644761 1_1:-1027253 None:intergenic
ACTGTAATAGGGAGGAGGGG+CGG 0.647217 1_1:-1027298 None:intergenic
AATGTATTCAACCCAATTAG+GGG 0.648667 1_1:+1029095 Msa0000200:CDS
TGGAAAGACTCGTACTGAGG+AGG 0.658466 1_1:-1027196 None:intergenic
TGAGGAGGTTGAAAGGATTG+CGG 0.659256 1_1:-1027181 None:intergenic
TAGCCATAACTGTAATAGGG+AGG 0.673963 1_1:-1027306 None:intergenic
ATTCACTCCAGATCGGTGAG+TGG 0.692086 1_1:+1027058 Msa0000200:five_prime_UTR
ATAACTGTAATAGGGAGGAG+GGG 0.695524 1_1:-1027301 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAGAAATTTAATGATTT+TGG + chr1_1:1027518-1027537 Msa0000200:intron 10.0%
!!! TTTAGAAATTTAATGATTTT+GGG + chr1_1:1027519-1027538 Msa0000200:intron 10.0%
!! ATATAATCTATGATAAATAA+AGG - chr1_1:1028531-1028550 None:intergenic 10.0%
!!! ATTTAGAAATTTAATGATTT+TGG + chr1_1:1027518-1027537 Msa0000200:intron 10.0%
!!! TTTAGAAATTTAATGATTTT+GGG + chr1_1:1027519-1027538 Msa0000200:intron 10.0%
!! ATATAATCTATGATAAATAA+AGG - chr1_1:1028531-1028550 None:intergenic 10.0%
!! GTATATTTATCTTATTGTAA+TGG + chr1_1:1027678-1027697 Msa0000200:intron 15.0%
!!! ACTTTTTAAGTTTATATAAG+TGG - chr1_1:1027855-1027874 None:intergenic 15.0%
!! AAAATTATAAATTTACAGCA+TGG - chr1_1:1028911-1028930 None:intergenic 15.0%
!! GTATATTTATCTTATTGTAA+TGG + chr1_1:1027678-1027697 Msa0000200:intron 15.0%
!!! ACTTTTTAAGTTTATATAAG+TGG - chr1_1:1027855-1027874 None:intergenic 15.0%
!! AAAATTATAAATTTACAGCA+TGG - chr1_1:1028911-1028930 None:intergenic 15.0%
!!! GAGATTTTGTTATTTTTTGT+TGG + chr1_1:1027579-1027598 Msa0000200:intron 20.0%
!!! TTTTAAGTTTATATAAGTGG+AGG - chr1_1:1027852-1027871 None:intergenic 20.0%
!!! ATGTTTTGTAGGAAAATATT+TGG + chr1_1:1028154-1028173 Msa0000200:intron 20.0%
!! ACATATTATTCCAATACTAA+AGG - chr1_1:1028300-1028319 None:intergenic 20.0%
!! ACAAAATGGTAAAACAAAAT+TGG - chr1_1:1028362-1028381 None:intergenic 20.0%
!! AAATGTAGAAAATTTGGATT+TGG + chr1_1:1028394-1028413 Msa0000200:intron 20.0%
!!! CTATAACATTTAACTTGATA+TGG - chr1_1:1028599-1028618 None:intergenic 20.0%
!! CATATCAAGTTAAATGTTAT+AGG + chr1_1:1028597-1028616 Msa0000200:intron 20.0%
!! AATTTAAAAGAATTACCAAC+AGG - chr1_1:1028664-1028683 None:intergenic 20.0%
!! TTAAGTAGTTAGGAAATTTA+TGG + chr1_1:1028778-1028797 Msa0000200:intron 20.0%
!!! TTTATGAGTTTAAAACCTTT+TGG - chr1_1:1029037-1029056 None:intergenic 20.0%
!!! GAGATTTTGTTATTTTTTGT+TGG + chr1_1:1027579-1027598 Msa0000200:intron 20.0%
!!! TTTTAAGTTTATATAAGTGG+AGG - chr1_1:1027852-1027871 None:intergenic 20.0%
!!! ATGTTTTGTAGGAAAATATT+TGG + chr1_1:1028154-1028173 Msa0000200:intron 20.0%
!! ACATATTATTCCAATACTAA+AGG - chr1_1:1028300-1028319 None:intergenic 20.0%
!! ACAAAATGGTAAAACAAAAT+TGG - chr1_1:1028362-1028381 None:intergenic 20.0%
!! AAATGTAGAAAATTTGGATT+TGG + chr1_1:1028394-1028413 Msa0000200:intron 20.0%
!!! CTATAACATTTAACTTGATA+TGG - chr1_1:1028599-1028618 None:intergenic 20.0%
!! CATATCAAGTTAAATGTTAT+AGG + chr1_1:1028597-1028616 Msa0000200:intron 20.0%
!! AATTTAAAAGAATTACCAAC+AGG - chr1_1:1028664-1028683 None:intergenic 20.0%
!! TTAAGTAGTTAGGAAATTTA+TGG + chr1_1:1028778-1028797 Msa0000200:intron 20.0%
!!! TTTATGAGTTTAAAACCTTT+TGG - chr1_1:1029037-1029056 None:intergenic 20.0%
! TTAACTGATTGTTTGTTCAT+GGG - chr1_1:1027026-1027045 None:intergenic 25.0%
! TTTAACTGATTGTTTGTTCA+TGG - chr1_1:1027027-1027046 None:intergenic 25.0%
! ACAAAATCTCCAAACAAAAA+GGG - chr1_1:1027569-1027588 None:intergenic 25.0%
! AACAAAATCTCCAAACAAAA+AGG - chr1_1:1027570-1027589 None:intergenic 25.0%
! GGTTTATACTTATCTAATCT+TGG + chr1_1:1027600-1027619 Msa0000200:intron 25.0%
!!! GAGTTCTTTTTTGAATTCTT+AGG + chr1_1:1027801-1027820 Msa0000200:intron 25.0%
! TATTGTACTTTCAATTATGC+AGG + chr1_1:1027935-1027954 Msa0000200:intron 25.0%
! TTTCAATTATGCAGGATTTA+GGG + chr1_1:1027943-1027962 Msa0000200:intron 25.0%
! TGCTACTGTTCTATATAATA+AGG + chr1_1:1028049-1028068 Msa0000200:intron 25.0%
!! TACAATCTATCATTCCTTTT+AGG + chr1_1:1028122-1028141 Msa0000200:intron 25.0%
! TAGAAAATTTGGATTTGGAT+TGG + chr1_1:1028399-1028418 Msa0000200:intron 25.0%
! TGATTTAAACTAACTTCAGT+TGG + chr1_1:1028556-1028575 Msa0000200:intron 25.0%
! ACATGTCAATTTAAGTAGTT+AGG + chr1_1:1028768-1028787 Msa0000200:intron 25.0%
! TATAAGGGAAACTAAATTCA+AGG - chr1_1:1028876-1028895 None:intergenic 25.0%
!! GAATTTAGTTTCCCTTATAA+TGG + chr1_1:1028877-1028896 Msa0000200:intron 25.0%
! AAAATGTATTCAACCCAATT+AGG + chr1_1:1029093-1029112 Msa0000200:CDS 25.0%
! AAATGTATTCAACCCAATTA+GGG + chr1_1:1029094-1029113 Msa0000200:CDS 25.0%
! TTAACTGATTGTTTGTTCAT+GGG - chr1_1:1027026-1027045 None:intergenic 25.0%
! TTTAACTGATTGTTTGTTCA+TGG - chr1_1:1027027-1027046 None:intergenic 25.0%
! ACAAAATCTCCAAACAAAAA+GGG - chr1_1:1027569-1027588 None:intergenic 25.0%
! AACAAAATCTCCAAACAAAA+AGG - chr1_1:1027570-1027589 None:intergenic 25.0%
! GGTTTATACTTATCTAATCT+TGG + chr1_1:1027600-1027619 Msa0000200:intron 25.0%
!!! GAGTTCTTTTTTGAATTCTT+AGG + chr1_1:1027801-1027820 Msa0000200:intron 25.0%
! TATTGTACTTTCAATTATGC+AGG + chr1_1:1027935-1027954 Msa0000200:intron 25.0%
! TTTCAATTATGCAGGATTTA+GGG + chr1_1:1027943-1027962 Msa0000200:intron 25.0%
! TGCTACTGTTCTATATAATA+AGG + chr1_1:1028049-1028068 Msa0000200:intron 25.0%
!! TACAATCTATCATTCCTTTT+AGG + chr1_1:1028122-1028141 Msa0000200:intron 25.0%
! TAGAAAATTTGGATTTGGAT+TGG + chr1_1:1028399-1028418 Msa0000200:intron 25.0%
! TGATTTAAACTAACTTCAGT+TGG + chr1_1:1028556-1028575 Msa0000200:intron 25.0%
! ACATGTCAATTTAAGTAGTT+AGG + chr1_1:1028768-1028787 Msa0000200:intron 25.0%
! TATAAGGGAAACTAAATTCA+AGG - chr1_1:1028876-1028895 None:intergenic 25.0%
!! GAATTTAGTTTCCCTTATAA+TGG + chr1_1:1028877-1028896 Msa0000200:intron 25.0%
! AAAATGTATTCAACCCAATT+AGG + chr1_1:1029093-1029112 Msa0000200:CDS 25.0%
! AAATGTATTCAACCCAATTA+GGG + chr1_1:1029094-1029113 Msa0000200:CDS 25.0%
!!! TGCAACACTGTTTTTTAAGA+TGG - chr1_1:1026926-1026945 None:intergenic 30.0%
TTAAAAAACAGTGTTGCACA+CGG + chr1_1:1026928-1026947 Msa0000200:five_prime_UTR 30.0%
TAGTAGCCATAACTGTAATA+GGG - chr1_1:1027312-1027331 None:intergenic 30.0%
TTAGTAGCCATAACTGTAAT+AGG - chr1_1:1027313-1027332 None:intergenic 30.0%
AAGAAAGAAAAGCAAGAAGA+AGG - chr1_1:1027354-1027373 None:intergenic 30.0%
! TTATAGCTTATTTCTTCCAC+TGG + chr1_1:1027381-1027400 Msa0000200:intron 30.0%
! TATAGCTTATTTCTTCCACT+GGG + chr1_1:1027382-1027401 Msa0000200:intron 30.0%
GTTTATATAAGTGGAGGAAT+TGG - chr1_1:1027846-1027865 None:intergenic 30.0%
ATAGAACTTTCTAAGTCAGA+AGG - chr1_1:1027918-1027937 None:intergenic 30.0%
CTTTCAATTATGCAGGATTT+AGG + chr1_1:1027942-1027961 Msa0000200:intron 30.0%
AAGGAATGATAGATTGTACT+TGG - chr1_1:1028120-1028139 None:intergenic 30.0%
!! ATCTATCATTCCTTTTAGGT+TGG + chr1_1:1028126-1028145 Msa0000200:intron 30.0%
AACATTATAGCCAACCTAAA+AGG - chr1_1:1028139-1028158 None:intergenic 30.0%
! TGATTGACACTTGAGTATTT+TGG + chr1_1:1028188-1028207 Msa0000200:intron 30.0%
GAGAAAGATTTGAAAAAGAG+AGG + chr1_1:1028210-1028229 Msa0000200:intron 30.0%
GACTGATAAGTATTAGAACT+TGG + chr1_1:1028243-1028262 Msa0000200:intron 30.0%
TTGGAAAGTGACAACATAAA+AGG - chr1_1:1028343-1028362 None:intergenic 30.0%
GGTGTCAAATGTAGAAAATT+TGG + chr1_1:1028388-1028407 Msa0000200:intron 30.0%
AATTGAGCATAGAGAAACAA+AGG - chr1_1:1028628-1028647 None:intergenic 30.0%
TGAGATGCATATATAACCAT+TGG - chr1_1:1028740-1028759 None:intergenic 30.0%
TACTATATCCTCTATGTGAT+GGG - chr1_1:1028998-1029017 None:intergenic 30.0%
ATACTATATCCTCTATGTGA+TGG - chr1_1:1028999-1029018 None:intergenic 30.0%
!! TTTAAAACCTTTTGGTCGTA+TGG - chr1_1:1029029-1029048 None:intergenic 30.0%
AATGTATTCAACCCAATTAG+GGG + chr1_1:1029095-1029114 Msa0000200:CDS 30.0%
!!! TGCAACACTGTTTTTTAAGA+TGG - chr1_1:1026926-1026945 None:intergenic 30.0%
TTAAAAAACAGTGTTGCACA+CGG + chr1_1:1026928-1026947 Msa0000200:five_prime_UTR 30.0%
TAGTAGCCATAACTGTAATA+GGG - chr1_1:1027312-1027331 None:intergenic 30.0%
TTAGTAGCCATAACTGTAAT+AGG - chr1_1:1027313-1027332 None:intergenic 30.0%
AAGAAAGAAAAGCAAGAAGA+AGG - chr1_1:1027354-1027373 None:intergenic 30.0%
! TTATAGCTTATTTCTTCCAC+TGG + chr1_1:1027381-1027400 Msa0000200:intron 30.0%
! TATAGCTTATTTCTTCCACT+GGG + chr1_1:1027382-1027401 Msa0000200:intron 30.0%
GTTTATATAAGTGGAGGAAT+TGG - chr1_1:1027846-1027865 None:intergenic 30.0%
ATAGAACTTTCTAAGTCAGA+AGG - chr1_1:1027918-1027937 None:intergenic 30.0%
CTTTCAATTATGCAGGATTT+AGG + chr1_1:1027942-1027961 Msa0000200:intron 30.0%
AAGGAATGATAGATTGTACT+TGG - chr1_1:1028120-1028139 None:intergenic 30.0%
!! ATCTATCATTCCTTTTAGGT+TGG + chr1_1:1028126-1028145 Msa0000200:intron 30.0%
AACATTATAGCCAACCTAAA+AGG - chr1_1:1028139-1028158 None:intergenic 30.0%
! TGATTGACACTTGAGTATTT+TGG + chr1_1:1028188-1028207 Msa0000200:intron 30.0%
GAGAAAGATTTGAAAAAGAG+AGG + chr1_1:1028210-1028229 Msa0000200:intron 30.0%
GACTGATAAGTATTAGAACT+TGG + chr1_1:1028243-1028262 Msa0000200:intron 30.0%
TTGGAAAGTGACAACATAAA+AGG - chr1_1:1028343-1028362 None:intergenic 30.0%
GGTGTCAAATGTAGAAAATT+TGG + chr1_1:1028388-1028407 Msa0000200:intron 30.0%
AATTGAGCATAGAGAAACAA+AGG - chr1_1:1028628-1028647 None:intergenic 30.0%
TGAGATGCATATATAACCAT+TGG - chr1_1:1028740-1028759 None:intergenic 30.0%
TACTATATCCTCTATGTGAT+GGG - chr1_1:1028998-1029017 None:intergenic 30.0%
ATACTATATCCTCTATGTGA+TGG - chr1_1:1028999-1029018 None:intergenic 30.0%
!! TTTAAAACCTTTTGGTCGTA+TGG - chr1_1:1029029-1029048 None:intergenic 30.0%
AATGTATTCAACCCAATTAG+GGG + chr1_1:1029095-1029114 Msa0000200:CDS 30.0%
TGGAAAGAGATAGATAGTGT+TGG - chr1_1:1026906-1026925 None:intergenic 35.0%
TAGAGAGGAAGTAAGGTATA+TGG - chr1_1:1026956-1026975 None:intergenic 35.0%
ATGATGTTAGAGAGGAAGTA+AGG - chr1_1:1026963-1026982 None:intergenic 35.0%
! TTGTTTGTTTGGTGGAAGTT+GGG - chr1_1:1027105-1027124 None:intergenic 35.0%
! ATTGTTTGTTTGGTGGAAGT+TGG - chr1_1:1027106-1027125 None:intergenic 35.0%
TTCGGTCATGATTGTTTGTT+TGG - chr1_1:1027116-1027135 None:intergenic 35.0%
!! TATGGCTACTAAGCTTTTTC+TGG + chr1_1:1027321-1027340 Msa0000200:exon 35.0%
!!! TATTTTGATGAGCTCTGTGA+CGG + chr1_1:1027486-1027505 Msa0000200:intron 35.0%
! ATGCATCTTCCCTTTTTGTT+TGG + chr1_1:1027557-1027576 Msa0000200:intron 35.0%
CCAAGATATCAACAACAAAG+AGG - chr1_1:1027656-1027675 None:intergenic 35.0%
!! CCTCTTTGTTGTTGATATCT+TGG + chr1_1:1027653-1027672 Msa0000200:intron 35.0%
!! GGTTGGCTATAATGTTTTGT+AGG + chr1_1:1028143-1028162 Msa0000200:intron 35.0%
TTAGAACTTGGAACGAGATT+TGG + chr1_1:1028255-1028274 Msa0000200:intron 35.0%
CAGTTCATCACCTTTAGTAT+TGG + chr1_1:1028287-1028306 Msa0000200:intron 35.0%
AAGTGACAACATAAAAGGCA+TGG - chr1_1:1028338-1028357 None:intergenic 35.0%
! GTTTTACCATTTTGTGCAGA+AGG + chr1_1:1028367-1028386 Msa0000200:intron 35.0%
AACTTCAGTTGGATCATGTA+AGG + chr1_1:1028567-1028586 Msa0000200:intron 35.0%
TTGACTCAAATATCTCCTGT+TGG + chr1_1:1028646-1028665 Msa0000200:intron 35.0%
CTTTGTCAGTTACAAACCAA+TGG + chr1_1:1028721-1028740 Msa0000200:intron 35.0%
CCAATTACACAGTTATCGTA+CGG + chr1_1:1028807-1028826 Msa0000200:intron 35.0%
! CTTTTATTCCCATCACATAG+AGG + chr1_1:1028987-1029006 Msa0000200:intron 35.0%
ATGTATTCAACCCAATTAGG+GGG + chr1_1:1029096-1029115 Msa0000200:CDS 35.0%
! GTCTAAAATGTCAAGACTGT+GGG + chr1_1:1029136-1029155 Msa0000200:CDS 35.0%
ATGCACAATCCTTCTTTGAT+TGG - chr1_1:1029164-1029183 None:intergenic 35.0%
AAGTGCTTCTGATATGTGTA+TGG - chr1_1:1029230-1029249 None:intergenic 35.0%
!! ATACACATATCAGAAGCACT+TGG + chr1_1:1029229-1029248 Msa0000200:CDS 35.0%
TCCTGCTGATAGAAAATTAG+TGG + chr1_1:1029254-1029273 Msa0000200:CDS 35.0%
! TCCACTAATTTTCTATCAGC+AGG - chr1_1:1029258-1029277 None:intergenic 35.0%
! AAAGATCTGAAATGCATCCA+CGG + chr1_1:1029280-1029299 Msa0000200:CDS 35.0%
! ATCTCGATACATGGCATTTT+AGG - chr1_1:1029312-1029331 None:intergenic 35.0%
GAATCTTCAATCTCGATACA+TGG - chr1_1:1029321-1029340 None:intergenic 35.0%
TGGAAAGAGATAGATAGTGT+TGG - chr1_1:1026906-1026925 None:intergenic 35.0%
TAGAGAGGAAGTAAGGTATA+TGG - chr1_1:1026956-1026975 None:intergenic 35.0%
ATGATGTTAGAGAGGAAGTA+AGG - chr1_1:1026963-1026982 None:intergenic 35.0%
! TTGTTTGTTTGGTGGAAGTT+GGG - chr1_1:1027105-1027124 None:intergenic 35.0%
! ATTGTTTGTTTGGTGGAAGT+TGG - chr1_1:1027106-1027125 None:intergenic 35.0%
TTCGGTCATGATTGTTTGTT+TGG - chr1_1:1027116-1027135 None:intergenic 35.0%
!! TATGGCTACTAAGCTTTTTC+TGG + chr1_1:1027321-1027340 Msa0000200:exon 35.0%
!!! TATTTTGATGAGCTCTGTGA+CGG + chr1_1:1027486-1027505 Msa0000200:intron 35.0%
! ATGCATCTTCCCTTTTTGTT+TGG + chr1_1:1027557-1027576 Msa0000200:intron 35.0%
CCAAGATATCAACAACAAAG+AGG - chr1_1:1027656-1027675 None:intergenic 35.0%
!! CCTCTTTGTTGTTGATATCT+TGG + chr1_1:1027653-1027672 Msa0000200:intron 35.0%
!! GGTTGGCTATAATGTTTTGT+AGG + chr1_1:1028143-1028162 Msa0000200:intron 35.0%
TTAGAACTTGGAACGAGATT+TGG + chr1_1:1028255-1028274 Msa0000200:intron 35.0%
CAGTTCATCACCTTTAGTAT+TGG + chr1_1:1028287-1028306 Msa0000200:intron 35.0%
AAGTGACAACATAAAAGGCA+TGG - chr1_1:1028338-1028357 None:intergenic 35.0%
! GTTTTACCATTTTGTGCAGA+AGG + chr1_1:1028367-1028386 Msa0000200:intron 35.0%
AACTTCAGTTGGATCATGTA+AGG + chr1_1:1028567-1028586 Msa0000200:intron 35.0%
TTGACTCAAATATCTCCTGT+TGG + chr1_1:1028646-1028665 Msa0000200:intron 35.0%
CTTTGTCAGTTACAAACCAA+TGG + chr1_1:1028721-1028740 Msa0000200:intron 35.0%
CCAATTACACAGTTATCGTA+CGG + chr1_1:1028807-1028826 Msa0000200:intron 35.0%
! CTTTTATTCCCATCACATAG+AGG + chr1_1:1028987-1029006 Msa0000200:intron 35.0%
ATGTATTCAACCCAATTAGG+GGG + chr1_1:1029096-1029115 Msa0000200:CDS 35.0%
! GTCTAAAATGTCAAGACTGT+GGG + chr1_1:1029136-1029155 Msa0000200:CDS 35.0%
ATGCACAATCCTTCTTTGAT+TGG - chr1_1:1029164-1029183 None:intergenic 35.0%
AAGTGCTTCTGATATGTGTA+TGG - chr1_1:1029230-1029249 None:intergenic 35.0%
!! ATACACATATCAGAAGCACT+TGG + chr1_1:1029229-1029248 Msa0000200:CDS 35.0%
TCCTGCTGATAGAAAATTAG+TGG + chr1_1:1029254-1029273 Msa0000200:CDS 35.0%
! TCCACTAATTTTCTATCAGC+AGG - chr1_1:1029258-1029277 None:intergenic 35.0%
! AAAGATCTGAAATGCATCCA+CGG + chr1_1:1029280-1029299 Msa0000200:CDS 35.0%
! ATCTCGATACATGGCATTTT+AGG - chr1_1:1029312-1029331 None:intergenic 35.0%
GAATCTTCAATCTCGATACA+TGG - chr1_1:1029321-1029340 None:intergenic 35.0%
GGATTGGAATGATGTTAGAG+AGG - chr1_1:1026971-1026990 None:intergenic 40.0%
TGAGAGAAGAAGGAATGGAT+TGG - chr1_1:1026987-1027006 None:intergenic 40.0%
! TTCAAGAGTGTGAGAGAAGA+AGG - chr1_1:1026997-1027016 None:intergenic 40.0%
! TCTGGAGTGAATTCATGGAT+GGG - chr1_1:1027050-1027069 None:intergenic 40.0%
! ATCTGGAGTGAATTCATGGA+TGG - chr1_1:1027051-1027070 None:intergenic 40.0%
TCCATGAATTCACTCCAGAT+CGG + chr1_1:1027051-1027070 Msa0000200:five_prime_UTR 40.0%
! TGTTTGTTTGGTGGAAGTTG+GGG - chr1_1:1027104-1027123 None:intergenic 40.0%
GGTCATGATTGTTTGTTTGG+TGG - chr1_1:1027113-1027132 None:intergenic 40.0%
CAAACAATCATGACCGAACA+CGG + chr1_1:1027118-1027137 Msa0000200:five_prime_UTR 40.0%
GGCAAACTCAAATCCTACTT+CGG + chr1_1:1027139-1027158 Msa0000200:five_prime_UTR 40.0%
AATTGGAAAGACTCGTACTG+AGG - chr1_1:1027202-1027221 None:intergenic 40.0%
ATAACTGTAATAGGGAGGAG+GGG - chr1_1:1027304-1027323 None:intergenic 40.0%
CATAACTGTAATAGGGAGGA+GGG - chr1_1:1027305-1027324 None:intergenic 40.0%
TAGCCATAACTGTAATAGGG+AGG - chr1_1:1027309-1027328 None:intergenic 40.0%
AGCTACAAAACAAAACCCAG+TGG - chr1_1:1027400-1027419 None:intergenic 40.0%
!! ATTTTGATGAGCTCTGTGAC+GGG + chr1_1:1027487-1027506 Msa0000200:intron 40.0%
GTACCTTTGATGTAGTTGTG+TGG + chr1_1:1028071-1028090 Msa0000200:intron 40.0%
GTACCACACAACTACATCAA+AGG - chr1_1:1028077-1028096 None:intergenic 40.0%
GGACACAAACAGAGTACAAA+AGG - chr1_1:1028099-1028118 None:intergenic 40.0%
TTGACACCTTCTGCACAAAA+TGG - chr1_1:1028376-1028395 None:intergenic 40.0%
TGAGCATAGAGAAACAAAGG+AGG - chr1_1:1028625-1028644 None:intergenic 40.0%
CCGTACGATAACTGTGTAAT+TGG - chr1_1:1028810-1028829 None:intergenic 40.0%
TGGCAAAGCAGCCATTATAA+GGG - chr1_1:1028891-1028910 None:intergenic 40.0%
ATGGCAAAGCAGCCATTATA+AGG - chr1_1:1028892-1028911 None:intergenic 40.0%
AGTAACACCATACGACCAAA+AGG + chr1_1:1029019-1029038 Msa0000200:intron 40.0%
! GGTCTAAAATGTCAAGACTG+TGG + chr1_1:1029135-1029154 Msa0000200:CDS 40.0%
GGATTGGAATGATGTTAGAG+AGG - chr1_1:1026971-1026990 None:intergenic 40.0%
TGAGAGAAGAAGGAATGGAT+TGG - chr1_1:1026987-1027006 None:intergenic 40.0%
! TTCAAGAGTGTGAGAGAAGA+AGG - chr1_1:1026997-1027016 None:intergenic 40.0%
! TCTGGAGTGAATTCATGGAT+GGG - chr1_1:1027050-1027069 None:intergenic 40.0%
! ATCTGGAGTGAATTCATGGA+TGG - chr1_1:1027051-1027070 None:intergenic 40.0%
TCCATGAATTCACTCCAGAT+CGG + chr1_1:1027051-1027070 Msa0000200:five_prime_UTR 40.0%
! TGTTTGTTTGGTGGAAGTTG+GGG - chr1_1:1027104-1027123 None:intergenic 40.0%
GGTCATGATTGTTTGTTTGG+TGG - chr1_1:1027113-1027132 None:intergenic 40.0%
CAAACAATCATGACCGAACA+CGG + chr1_1:1027118-1027137 Msa0000200:five_prime_UTR 40.0%
GGCAAACTCAAATCCTACTT+CGG + chr1_1:1027139-1027158 Msa0000200:five_prime_UTR 40.0%
AATTGGAAAGACTCGTACTG+AGG - chr1_1:1027202-1027221 None:intergenic 40.0%
ATAACTGTAATAGGGAGGAG+GGG - chr1_1:1027304-1027323 None:intergenic 40.0%
CATAACTGTAATAGGGAGGA+GGG - chr1_1:1027305-1027324 None:intergenic 40.0%
TAGCCATAACTGTAATAGGG+AGG - chr1_1:1027309-1027328 None:intergenic 40.0%
AGCTACAAAACAAAACCCAG+TGG - chr1_1:1027400-1027419 None:intergenic 40.0%
!! ATTTTGATGAGCTCTGTGAC+GGG + chr1_1:1027487-1027506 Msa0000200:intron 40.0%
GTACCTTTGATGTAGTTGTG+TGG + chr1_1:1028071-1028090 Msa0000200:intron 40.0%
GTACCACACAACTACATCAA+AGG - chr1_1:1028077-1028096 None:intergenic 40.0%
GGACACAAACAGAGTACAAA+AGG - chr1_1:1028099-1028118 None:intergenic 40.0%
TTGACACCTTCTGCACAAAA+TGG - chr1_1:1028376-1028395 None:intergenic 40.0%
TGAGCATAGAGAAACAAAGG+AGG - chr1_1:1028625-1028644 None:intergenic 40.0%
CCGTACGATAACTGTGTAAT+TGG - chr1_1:1028810-1028829 None:intergenic 40.0%
TGGCAAAGCAGCCATTATAA+GGG - chr1_1:1028891-1028910 None:intergenic 40.0%
ATGGCAAAGCAGCCATTATA+AGG - chr1_1:1028892-1028911 None:intergenic 40.0%
AGTAACACCATACGACCAAA+AGG + chr1_1:1029019-1029038 Msa0000200:intron 40.0%
! GGTCTAAAATGTCAAGACTG+TGG + chr1_1:1029135-1029154 Msa0000200:CDS 40.0%
GAGTGTGAGAGAAGAAGGAA+TGG - chr1_1:1026992-1027011 None:intergenic 45.0%
! ACCGATCTGGAGTGAATTCA+TGG - chr1_1:1027055-1027074 None:intergenic 45.0%
! GTTTGTTTGGTGGAAGTTGG+GGG - chr1_1:1027103-1027122 None:intergenic 45.0%
! GGATTTGAGTTTGCCGTGTT+CGG - chr1_1:1027134-1027153 None:intergenic 45.0%
TGAGGAGGTTGAAAGGATTG+CGG - chr1_1:1027184-1027203 None:intergenic 45.0%
CCATAACTGTAATAGGGAGG+AGG - chr1_1:1027306-1027325 None:intergenic 45.0%
CCTCCTCCCTATTACAGTTA+TGG + chr1_1:1027303-1027322 Msa0000200:exon 45.0%
CACTTCTTCTCCCCCTAATT+GGG - chr1_1:1029109-1029128 None:intergenic 45.0%
ACACTTCTTCTCCCCCTAAT+TGG - chr1_1:1029110-1029129 None:intergenic 45.0%
!! AGGGGGAGAAGAAGTGTTAA+AGG + chr1_1:1029113-1029132 Msa0000200:CDS 45.0%
!! GGGGGAGAAGAAGTGTTAAA+GGG + chr1_1:1029114-1029133 Msa0000200:CDS 45.0%
CTGTGGGAACCAATCAAAGA+AGG + chr1_1:1029152-1029171 Msa0000200:CDS 45.0%
GAGTGTGAGAGAAGAAGGAA+TGG - chr1_1:1026992-1027011 None:intergenic 45.0%
! ACCGATCTGGAGTGAATTCA+TGG - chr1_1:1027055-1027074 None:intergenic 45.0%
! GTTTGTTTGGTGGAAGTTGG+GGG - chr1_1:1027103-1027122 None:intergenic 45.0%
! GGATTTGAGTTTGCCGTGTT+CGG - chr1_1:1027134-1027153 None:intergenic 45.0%
TGAGGAGGTTGAAAGGATTG+CGG - chr1_1:1027184-1027203 None:intergenic 45.0%
CCATAACTGTAATAGGGAGG+AGG - chr1_1:1027306-1027325 None:intergenic 45.0%
CCTCCTCCCTATTACAGTTA+TGG + chr1_1:1027303-1027322 Msa0000200:exon 45.0%
CACTTCTTCTCCCCCTAATT+GGG - chr1_1:1029109-1029128 None:intergenic 45.0%
ACACTTCTTCTCCCCCTAAT+TGG - chr1_1:1029110-1029129 None:intergenic 45.0%
!! AGGGGGAGAAGAAGTGTTAA+AGG + chr1_1:1029113-1029132 Msa0000200:CDS 45.0%
!! GGGGGAGAAGAAGTGTTAAA+GGG + chr1_1:1029114-1029133 Msa0000200:CDS 45.0%
CTGTGGGAACCAATCAAAGA+AGG + chr1_1:1029152-1029171 Msa0000200:CDS 45.0%
ATTCACTCCAGATCGGTGAG+TGG + chr1_1:1027058-1027077 Msa0000200:five_prime_UTR 50.0%
TTTGGTGGAAGTTGGGGGTT+AGG - chr1_1:1027098-1027117 None:intergenic 50.0%
CTCGTACTGAGGAGGTTGAA+AGG - chr1_1:1027191-1027210 None:intergenic 50.0%
TGGAAAGACTCGTACTGAGG+AGG - chr1_1:1027199-1027218 None:intergenic 50.0%
AGGGTGAAGAGGTGGGAAAT+TGG - chr1_1:1027219-1027238 None:intergenic 50.0%
AAGGGTTAGGGTGAAGAGGT+GGG - chr1_1:1027226-1027245 None:intergenic 50.0%
TAAGGGTTAGGGTGAAGAGG+TGG - chr1_1:1027227-1027246 None:intergenic 50.0%
ATTCACTCCAGATCGGTGAG+TGG + chr1_1:1027058-1027077 Msa0000200:five_prime_UTR 50.0%
TTTGGTGGAAGTTGGGGGTT+AGG - chr1_1:1027098-1027117 None:intergenic 50.0%
CTCGTACTGAGGAGGTTGAA+AGG - chr1_1:1027191-1027210 None:intergenic 50.0%
TGGAAAGACTCGTACTGAGG+AGG - chr1_1:1027199-1027218 None:intergenic 50.0%
AGGGTGAAGAGGTGGGAAAT+TGG - chr1_1:1027219-1027238 None:intergenic 50.0%
AAGGGTTAGGGTGAAGAGGT+GGG - chr1_1:1027226-1027245 None:intergenic 50.0%
TAAGGGTTAGGGTGAAGAGG+TGG - chr1_1:1027227-1027246 None:intergenic 50.0%
AACGAAGCCACTCACCGATC+TGG - chr1_1:1027068-1027087 None:intergenic 55.0%
GTGGAAGTTGGGGGTTAGGA+GGG - chr1_1:1027094-1027113 None:intergenic 55.0%
GGTTGAAAGGATTGCGGCGA+CGG - chr1_1:1027178-1027197 None:intergenic 55.0%
GGGTAAGGGTTAGGGTGAAG+AGG - chr1_1:1027230-1027249 None:intergenic 55.0%
ACTGTAATAGGGAGGAGGGG+CGG - chr1_1:1027301-1027320 None:intergenic 55.0%
!!! GGCATTTTAGGACTCTGCCG+TGG - chr1_1:1029300-1029319 None:intergenic 55.0%
AACGAAGCCACTCACCGATC+TGG - chr1_1:1027068-1027087 None:intergenic 55.0%
GTGGAAGTTGGGGGTTAGGA+GGG - chr1_1:1027094-1027113 None:intergenic 55.0%
GGTTGAAAGGATTGCGGCGA+CGG - chr1_1:1027178-1027197 None:intergenic 55.0%
GGGTAAGGGTTAGGGTGAAG+AGG - chr1_1:1027230-1027249 None:intergenic 55.0%
ACTGTAATAGGGAGGAGGGG+CGG - chr1_1:1027301-1027320 None:intergenic 55.0%
!!! GGCATTTTAGGACTCTGCCG+TGG - chr1_1:1029300-1029319 None:intergenic 55.0%
GGTGGAAGTTGGGGGTTAGG+AGG - chr1_1:1027095-1027114 None:intergenic 60.0%
TGAAAGGATTGCGGCGACGG+CGG - chr1_1:1027175-1027194 None:intergenic 60.0%
!! GATGGCGGGGGTAAGGGTTA+GGG - chr1_1:1027238-1027257 None:intergenic 60.0%
CTAACCCTTACCCCCGCCAT+CGG + chr1_1:1027237-1027256 Msa0000200:five_prime_UTR 60.0%
!! GAAACCGATGGCGGGGGTAA+GGG - chr1_1:1027244-1027263 None:intergenic 60.0%
TAATAGGGAGGAGGGGCGGA+GGG - chr1_1:1027297-1027316 None:intergenic 60.0%
GGTGGAAGTTGGGGGTTAGG+AGG - chr1_1:1027095-1027114 None:intergenic 60.0%
TGAAAGGATTGCGGCGACGG+CGG - chr1_1:1027175-1027194 None:intergenic 60.0%
!! GATGGCGGGGGTAAGGGTTA+GGG - chr1_1:1027238-1027257 None:intergenic 60.0%
CTAACCCTTACCCCCGCCAT+CGG + chr1_1:1027237-1027256 Msa0000200:five_prime_UTR 60.0%
!! GAAACCGATGGCGGGGGTAA+GGG - chr1_1:1027244-1027263 None:intergenic 60.0%
TAATAGGGAGGAGGGGCGGA+GGG - chr1_1:1027297-1027316 None:intergenic 60.0%
!! CGATGGCGGGGGTAAGGGTT+AGG - chr1_1:1027239-1027258 None:intergenic 65.0%
!! GGAAACCGATGGCGGGGGTA+AGG - chr1_1:1027245-1027264 None:intergenic 65.0%
! GTGAGGGAAACCGATGGCGG+GGG - chr1_1:1027250-1027269 None:intergenic 65.0%
GGTGAGGGAAACCGATGGCG+GGG - chr1_1:1027251-1027270 None:intergenic 65.0%
GGGTGAGGGAAACCGATGGC+GGG - chr1_1:1027252-1027271 None:intergenic 65.0%
GGGGTGAGGGAAACCGATGG+CGG - chr1_1:1027253-1027272 None:intergenic 65.0%
GTCGGGGTGAGGGAAACCGA+TGG - chr1_1:1027256-1027275 None:intergenic 65.0%
TCGGATCCAGGAGGACGGTC+GGG - chr1_1:1027273-1027292 None:intergenic 65.0%
GTCGGATCCAGGAGGACGGT+CGG - chr1_1:1027274-1027293 None:intergenic 65.0%
AGGGGTCGGATCCAGGAGGA+CGG - chr1_1:1027278-1027297 None:intergenic 65.0%
AATAGGGAGGAGGGGCGGAG+GGG - chr1_1:1027296-1027315 None:intergenic 65.0%
GTAATAGGGAGGAGGGGCGG+AGG - chr1_1:1027298-1027317 None:intergenic 65.0%
!! CGATGGCGGGGGTAAGGGTT+AGG - chr1_1:1027239-1027258 None:intergenic 65.0%
!! GGAAACCGATGGCGGGGGTA+AGG - chr1_1:1027245-1027264 None:intergenic 65.0%
! GTGAGGGAAACCGATGGCGG+GGG - chr1_1:1027250-1027269 None:intergenic 65.0%
GGTGAGGGAAACCGATGGCG+GGG - chr1_1:1027251-1027270 None:intergenic 65.0%
GGGTGAGGGAAACCGATGGC+GGG - chr1_1:1027252-1027271 None:intergenic 65.0%
GGGGTGAGGGAAACCGATGG+CGG - chr1_1:1027253-1027272 None:intergenic 65.0%
GTCGGGGTGAGGGAAACCGA+TGG - chr1_1:1027256-1027275 None:intergenic 65.0%
TCGGATCCAGGAGGACGGTC+GGG - chr1_1:1027273-1027292 None:intergenic 65.0%
GTCGGATCCAGGAGGACGGT+CGG - chr1_1:1027274-1027293 None:intergenic 65.0%
AGGGGTCGGATCCAGGAGGA+CGG - chr1_1:1027278-1027297 None:intergenic 65.0%
AATAGGGAGGAGGGGCGGAG+GGG - chr1_1:1027296-1027315 None:intergenic 65.0%
GTAATAGGGAGGAGGGGCGG+AGG - chr1_1:1027298-1027317 None:intergenic 65.0%
CGGAGGAGGGTGGCCGAAGT+AGG - chr1_1:1027155-1027174 None:intergenic 70.0%
ATTGCGGCGACGGCGGAGGA+GGG - chr1_1:1027168-1027187 None:intergenic 70.0%
AAGGATTGCGGCGACGGCGG+AGG - chr1_1:1027172-1027191 None:intergenic 70.0%
CAGGAGGACGGTCGGGGTGA+GGG - chr1_1:1027266-1027285 None:intergenic 70.0%
CGGATCCAGGAGGACGGTCG+GGG - chr1_1:1027272-1027291 None:intergenic 70.0%
CGGAGGAGGGTGGCCGAAGT+AGG - chr1_1:1027155-1027174 None:intergenic 70.0%
ATTGCGGCGACGGCGGAGGA+GGG - chr1_1:1027168-1027187 None:intergenic 70.0%
AAGGATTGCGGCGACGGCGG+AGG - chr1_1:1027172-1027191 None:intergenic 70.0%
CAGGAGGACGGTCGGGGTGA+GGG - chr1_1:1027266-1027285 None:intergenic 70.0%
CGGATCCAGGAGGACGGTCG+GGG - chr1_1:1027272-1027291 None:intergenic 70.0%
GATTGCGGCGACGGCGGAGG+AGG - chr1_1:1027169-1027188 None:intergenic 75.0%
CCAGGAGGACGGTCGGGGTG+AGG - chr1_1:1027267-1027286 None:intergenic 75.0%
CCTCACCCCGACCGTCCTCC+TGG + chr1_1:1027264-1027283 Msa0000200:five_prime_UTR 75.0%
GCGGAGGGGTCGGATCCAGG+AGG - chr1_1:1027282-1027301 None:intergenic 75.0%
GATTGCGGCGACGGCGGAGG+AGG - chr1_1:1027169-1027188 None:intergenic 75.0%
CCAGGAGGACGGTCGGGGTG+AGG - chr1_1:1027267-1027286 None:intergenic 75.0%
CCTCACCCCGACCGTCCTCC+TGG + chr1_1:1027264-1027283 Msa0000200:five_prime_UTR 75.0%
GCGGAGGGGTCGGATCCAGG+AGG - chr1_1:1027282-1027301 None:intergenic 75.0%
! GGGGCGGAGGGGTCGGATCC+AGG - chr1_1:1027285-1027304 None:intergenic 80.0%
! GGGAGGAGGGGCGGAGGGGT+CGG - chr1_1:1027292-1027311 None:intergenic 80.0%
! GGGGCGGAGGGGTCGGATCC+AGG - chr1_1:1027285-1027304 None:intergenic 80.0%
! GGGAGGAGGGGCGGAGGGGT+CGG - chr1_1:1027292-1027311 None:intergenic 80.0%
! GCGGCGACGGCGGAGGAGGG+TGG - chr1_1:1027165-1027184 None:intergenic 85.0%
! GCGGCGACGGCGGAGGAGGG+TGG - chr1_1:1027165-1027184 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 1026901 1029347 1026901 ID=Msa0000200;Name=Msa0000200
chr1_1 mRNA 1026901 1029347 1026901 ID=Msa0000200-mRNA-1;Parent=Msa0000200;Name=Msa0000200-mRNA-1;_AED=0.33;_eAED=0.48;_QI=421|0|0.5|1|1|1|2|0|92
chr1_1 exon 1026901 1027342 1026901 ID=Msa0000200-mRNA-1:exon:109;Parent=Msa0000200-mRNA-1
chr1_1 exon 1029090 1029347 1029090 ID=Msa0000200-mRNA-1:exon:110;Parent=Msa0000200-mRNA-1
chr1_1 five_prime_UTR 1026901 1027321 1026901 ID=Msa0000200-mRNA-1:five_prime_utr;Parent=Msa0000200-mRNA-1
chr1_1 CDS 1027322 1027342 1027322 ID=Msa0000200-mRNA-1:cds;Parent=Msa0000200-mRNA-1
chr1_1 CDS 1029090 1029347 1029090 ID=Msa0000200-mRNA-1:cds;Parent=Msa0000200-mRNA-1
Gene Sequence

>Msa0000200

ATGGCTACTAAGCTTTTTCTGAAAAAAATGTATTCAACCCAATTAGGGGGAGAAGAAGTGTTAAAGGGTCTAAAATGTCAAGACTGTGGGAACCAATCAAAGAAGGATTGTGCATACTCAAGATGCAGAAGTTGCTGCAAAAACAAAGATTTTAGCTGCCATACACATATCAGAAGCACTTGGATTCCTGCTGATAGAAAATTAGTGGAAAAAAGATCTGAAATGCATCCACGGCAGAGTCCTAAAATGCCATGTATCGAGATTGAAGATTCAAAGTAA
Protein sequence

>Msa0000200

MATKLFLKKMYSTQLGGEEVLKGLKCQDCGNQSKKDCAYSRCRSCCKNKDFSCHTHIRSTWIPADRKLVEKRSEMHPRQSPKMPCIEIEDSK*