AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0022790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 98 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTCCTCCTTCAAGAATTT+TGG 0.171282 1_1:-43015730 Msa0022790:three_prime_UTR
TTCCCTCATGTAGTATTTAA+AGG 0.173459 1_1:+43015429 None:intergenic
TTACAATGATAATGTGTATT+TGG 0.176865 1_1:+43017910 None:intergenic
TACAGTGATAATGTGTATTA+TGG 0.178827 1_1:+43016158 None:intergenic
AAGTCACAGGTGACAAATTC+AGG 0.286926 1_1:-43019420 Msa0022790:five_prime_UTR
CAGAATTTGCAGTGCAGCGC+AGG 0.294148 1_1:+43015336 None:intergenic
TTCATTTCTGTGTGTGGTTA+AGG 0.294857 1_1:+43020392 None:intergenic
TAATTATAAATATAATTGTT+AGG 0.307154 1_1:-43015843 Msa0022790:three_prime_UTR
GTTGAGGATGTTTGCATAGT+TGG 0.318206 1_1:-43019491 Msa0022790:five_prime_UTR
AACAGATCTGAACAATAAAA+AGG 0.324414 1_1:+43020587 None:intergenic
GACTCTGCATAAGACAATAA+TGG 0.355828 1_1:-43015876 Msa0022790:three_prime_UTR
ATCCGCCGTGTTCGTTTGAA+TGG 0.359236 1_1:-43020513 Msa0022790:five_prime_UTR
AAACAATTCCGCAAAGCGTT+TGG 0.366269 1_1:+43016245 None:intergenic
TAGGTACCACCGTCGCTTCT+AGG 0.379077 1_1:+43020430 None:intergenic
ACCATTTCTCCCCATCTAGA+TGG 0.390770 1_1:-43019362 Msa0022790:CDS
TTACAGAAGGTCCATCTAGA+TGG 0.393898 1_1:+43019351 None:intergenic
AATGTTGAGGCGGCTGTGTT+TGG 0.404045 1_1:+43020682 None:intergenic
TGCCATCCGGCAGCCTTCTT+AGG 0.405515 1_1:-43020660 Msa0022790:five_prime_UTR
TTGTCTCCCAAAATTCTTGA+AGG 0.413650 1_1:+43015723 None:intergenic
TAGTACAAAACAGAGGTATA+TGG 0.414342 1_1:+43015920 None:intergenic
CGAAAGAGCCTTGGAGAGAA+AGG 0.423381 1_1:-43015405 Msa0022790:three_prime_UTR
AGAGATGAGTTCAAAATTAG+TGG 0.424415 1_1:+43020629 None:intergenic
AGAAAGAGCCTTGGAGAGAA+AGG 0.426750 1_1:-43015360 Msa0022790:three_prime_UTR
ACTCTGCATAAGACAATAAT+GGG 0.428670 1_1:-43015875 Msa0022790:three_prime_UTR
CATAGTTGGTGCTCCAATGC+AGG 0.438314 1_1:-43019477 Msa0022790:five_prime_UTR
GCCTTCATACTGCTTTCTGC+TGG 0.438656 1_1:-43015756 Msa0022790:three_prime_UTR
AATTATAAATATAATTGTTA+GGG 0.440124 1_1:-43015842 Msa0022790:three_prime_UTR
ACAGTGATAATGTGTATTAT+GGG 0.445189 1_1:+43016159 None:intergenic
ATCATGCCCCAGTCCATGAA+TGG 0.447124 1_1:+43019393 None:intergenic
GCTGCTATCCAAACGCTTTG+CGG 0.447265 1_1:-43016253 Msa0022790:CDS
TCCATCTAGATGGGGAGAAA+TGG 0.448127 1_1:+43019361 None:intergenic
CTCAAGCTTGTTGCATATGT+TGG 0.452344 1_1:-43016970 Msa0022790:CDS
CAACTAAGAGCTTATCTCAT+TGG 0.455962 1_1:+43015606 None:intergenic
CTAATATCACGATCTGATAG+AGG 0.463081 1_1:+43020456 None:intergenic
TTGGAGAGAAAGGAAGGGCT+TGG 0.464845 1_1:-43015395 Msa0022790:three_prime_UTR
AAATTCAGGAAACCCATTCA+TGG 0.464931 1_1:-43019406 Msa0022790:exon
TTTGCGGAATTGTTTGATGA+AGG 0.478173 1_1:-43016237 Msa0022790:CDS
AAAGGTTGGCTTTGTAGAGA+AGG 0.479190 1_1:+43020605 None:intergenic
GTTAGAACCCACGCTGGTTG+AGG 0.491363 1_1:-43019507 Msa0022790:five_prime_UTR
AAGCCCTTCCTTTCTCTCCA+AGG 0.495149 1_1:+43015397 None:intergenic
CAGGAAACCCATTCATGGAC+TGG 0.498843 1_1:-43019401 Msa0022790:exon
GCCGCCTCAACATTGCCATC+CGG 0.503285 1_1:-43020673 Msa0022790:five_prime_UTR
AGGAAACCCATTCATGGACT+GGG 0.506394 1_1:-43019400 Msa0022790:exon
CTTCATCTCATAGTTTCTCA+AGG 0.506698 1_1:+43017985 None:intergenic
TGAGGGAAGCGAAAGAGCCT+TGG 0.511561 1_1:-43015414 Msa0022790:three_prime_UTR
GTTGAGGCGGCTGTGTTTGG+TGG 0.512688 1_1:+43020685 None:intergenic
TCATGCCCCAGTCCATGAAT+GGG 0.513202 1_1:+43019394 None:intergenic
GTTCAAAATTAGTGGTGGTA+TGG 0.514683 1_1:+43020637 None:intergenic
CGTTTGGATAGCAGCCAAGC+AGG 0.516208 1_1:+43016261 None:intergenic
CTTGAGAAACTATGAGATGA+AGG 0.518610 1_1:-43017984 Msa0022790:CDS
ACGATCTGATAGAGGGTTGT+CGG 0.521070 1_1:+43020464 None:intergenic
TACAGAAGGTCCATCTAGAT+GGG 0.521806 1_1:+43019352 None:intergenic
GCGCAGGGCCTTTCTCTCCA+AGG 0.526608 1_1:+43015352 None:intergenic
CACGGCGGATCCACGGTGGC+AGG 0.528805 1_1:+43020526 None:intergenic
TTGCCTTTAAATACTACATG+AGG 0.534140 1_1:-43015432 Msa0022790:three_prime_UTR
CGCCGTGTTCGTTTGAATGG+AGG 0.537898 1_1:-43020510 Msa0022790:five_prime_UTR
TTCTTGTCGACATACCTGCT+TGG 0.538298 1_1:-43016275 Msa0022790:CDS
AGAGCCTTGGAGAGAAAGGA+AGG 0.541262 1_1:-43015401 Msa0022790:three_prime_UTR
GTGAGAGAGAGAAAGAGCCT+TGG 0.551422 1_1:-43015369 Msa0022790:three_prime_UTR
TCTCCCAAAATTCTTGAAGG+AGG 0.552827 1_1:+43015726 None:intergenic
AGTGGTGGTATGGCCTAAGA+AGG 0.554829 1_1:+43020647 None:intergenic
GTATGGCCTAAGAAGGCTGC+CGG 0.565972 1_1:+43020654 None:intergenic
GCCAGCAGAAAGCAGTATGA+AGG 0.568670 1_1:+43015755 None:intergenic
TAGAGGGTTGTCGGTAGTAG+TGG 0.576250 1_1:+43020473 None:intergenic
AGAATTTGCAGTGCAGCGCA+GGG 0.576307 1_1:+43015337 None:intergenic
CATACTGCTTTCTGCTGGCG+TGG 0.581915 1_1:-43015751 Msa0022790:three_prime_UTR
CAAAATGTGATGGCAAGGCA+AGG 0.585482 1_1:-43015458 Msa0022790:three_prime_UTR
AGAGGCATAAAGTTGCATGA+TGG 0.590712 1_1:-43015697 Msa0022790:three_prime_UTR
AAACGAACACGGCGGATCCA+CGG 0.597311 1_1:+43020519 None:intergenic
ACAGAGAGTCATAGAGACGT+TGG 0.601431 1_1:+43020753 None:intergenic
ATGAAAACTGCAGACGACAC+CGG 0.609180 1_1:-43020374 Msa0022790:five_prime_UTR
TGTTAGTGCTGCAAAGTCAC+AGG 0.610160 1_1:-43019433 Msa0022790:five_prime_UTR
TGCCTTTAAATACTACATGA+GGG 0.610711 1_1:-43015431 Msa0022790:three_prime_UTR
GCCGGATGGCAATGTTGAGG+CGG 0.611490 1_1:+43020672 None:intergenic
GCTTGCAAAATGTGATGGCA+AGG 0.615832 1_1:-43015463 Msa0022790:three_prime_UTR
GGCCTAAGAAGGCTGCCGGA+TGG 0.619680 1_1:+43020658 None:intergenic
ATCACATCTGCAGATTTGTG+TGG 0.619954 1_1:+43016212 None:intergenic
ATAGTTGGTGCTCCAATGCA+GGG 0.620045 1_1:-43019476 Msa0022790:five_prime_UTR
TAATATCACGATCTGATAGA+GGG 0.623312 1_1:+43020457 None:intergenic
ACAAATCTGCAGATGTGATG+AGG 0.630753 1_1:-43016208 Msa0022790:CDS
GATGAGTTCAAAATTAGTGG+TGG 0.631675 1_1:+43020632 None:intergenic
GAGCCTTGGAGAGAAAGGAA+GGG 0.646139 1_1:-43015400 Msa0022790:three_prime_UTR
GTCCTCCATTCAAACGAACA+CGG 0.653128 1_1:+43020508 None:intergenic
CAAACATCCTCAACCAGCGT+GGG 0.654114 1_1:+43019500 None:intergenic
GCTGCCGGATGGCAATGTTG+AGG 0.658758 1_1:+43020669 None:intergenic
GCAAACATCCTCAACCAGCG+TGG 0.659050 1_1:+43019499 None:intergenic
AGCTGTCAAAGCTACTGATG+AGG 0.663227 1_1:-43017961 Msa0022790:CDS
AAGGTCTTAGAAGCTGTCGT+AGG 0.673848 1_1:+43020411 None:intergenic
TATTAGACGCCTAGAAGCGA+CGG 0.676167 1_1:-43020439 Msa0022790:five_prime_UTR
GGAAACCCATTCATGGACTG+GGG 0.682242 1_1:-43019399 Msa0022790:exon
ACAGAAGGTCCATCTAGATG+GGG 0.687511 1_1:+43019353 None:intergenic
TAGACGCCTAGAAGCGACGG+TGG 0.706943 1_1:-43020436 Msa0022790:five_prime_UTR
TTTGGGGTTAGAACCCACGC+TGG 0.715063 1_1:-43019513 Msa0022790:five_prime_UTR
ACATTCTTAGTACAAAACAG+AGG 0.764301 1_1:+43015913 None:intergenic
GTTCATTTATCCTGCCACCG+TGG 0.766910 1_1:-43020536 Msa0022790:five_prime_UTR
CGAACACGGCGGATCCACGG+TGG 0.771353 1_1:+43020522 None:intergenic
CTCCATTCAAACGAACACGG+CGG 0.804040 1_1:+43020511 None:intergenic
GGTGGCAGGATAAATGAACG+CGG 0.808001 1_1:+43020540 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAATAAAAAATAAAAA+AGG - chr1_1:43016079-43016098 Msa0022790:three_prime_UTR 0.0%
!! TTAAATTTAAATTATTTAAT+TGG - chr1_1:43019319-43019338 Msa0022790:intron 0.0%
!!! ATTAATTTTATTAATTTTAT+TGG - chr1_1:43019686-43019705 Msa0022790:intron 0.0%
!! AAATAAAAAATAAAAAAGGA+CGG - chr1_1:43016083-43016102 Msa0022790:three_prime_UTR 10.0%
!! AGAATATATTGTTAATATTT+AGG - chr1_1:43016934-43016953 Msa0022790:CDS 10.0%
!!! ATTGGTAAAATTATAATTTT+TGG - chr1_1:43018506-43018525 Msa0022790:intron 10.0%
!! GAAATAAAATGAAAAAAATT+TGG + chr1_1:43018674-43018693 None:intergenic 10.0%
!! AATAAAAAATAAAAAAGGAC+GGG - chr1_1:43016084-43016103 Msa0022790:three_prime_UTR 15.0%
!! ATGAATAAATAATAATGGTT+AGG - chr1_1:43016128-43016147 Msa0022790:exon 15.0%
!! TGAATAAATAATAATGGTTA+GGG - chr1_1:43016129-43016148 Msa0022790:exon 15.0%
!!! TTAATATTTAGGCTTTATTT+GGG - chr1_1:43016945-43016964 Msa0022790:CDS 15.0%
!!! ATGAATACTTTTGTTTTTTA+CGG - chr1_1:43016991-43017010 Msa0022790:intron 15.0%
!! AAACATAGTTTGAAAAAAAA+GGG + chr1_1:43017154-43017173 None:intergenic 15.0%
!!! TTTTTTTTATCTGTTTTTTG+TGG - chr1_1:43017428-43017447 Msa0022790:intron 15.0%
!! TATTTCAATTGTTAAATGAA+AGG + chr1_1:43017939-43017958 None:intergenic 15.0%
!! TGAAGCAAAAATTAATAAAA+TGG - chr1_1:43017992-43018011 Msa0022790:CDS 15.0%
!!! ATTTAATTTAAATATGTGTG+TGG + chr1_1:43019305-43019324 None:intergenic 15.0%
!! ATTGGTAAAATTATAATTTC+TGG - chr1_1:43019727-43019746 Msa0022790:intron 15.0%
!!! TATTATTTTTAACTTGCAAT+TGG - chr1_1:43020057-43020076 Msa0022790:intron 15.0%
!!! TTTTAAGTTTTGAACCTAAA+AGG - chr1_1:43015862-43015881 Msa0022790:three_prime_UTR 20.0%
!!! AGTATAATAACAAACCTTTT+AGG + chr1_1:43015879-43015898 None:intergenic 20.0%
!! TGTTATTATACTTGTAACAT+AGG - chr1_1:43015887-43015906 Msa0022790:three_prime_UTR 20.0%
!! ATAAAAAATAAAAAAGGACG+GGG - chr1_1:43016085-43016104 Msa0022790:three_prime_UTR 20.0%
!! ATCTAAGTTATACATGATTT+AGG - chr1_1:43016240-43016259 Msa0022790:CDS 20.0%
!! AGTATGAAATGTTAACTTTA+TGG - chr1_1:43016828-43016847 Msa0022790:intron 20.0%
!!! GTTAATATTTAGGCTTTATT+TGG - chr1_1:43016944-43016963 Msa0022790:CDS 20.0%
!!! TAATATTTAGGCTTTATTTG+GGG - chr1_1:43016946-43016965 Msa0022790:CDS 20.0%
!!! TGAATACTTTTGTTTTTTAC+GGG - chr1_1:43016992-43017011 Msa0022790:intron 20.0%
!! CAAACATAGTTTGAAAAAAA+AGG + chr1_1:43017155-43017174 None:intergenic 20.0%
!!! TTTGTAACATTTTTTAGCTA+TGG + chr1_1:43017181-43017200 None:intergenic 20.0%
!! TAATTCATTTCCAAGTTTAA+TGG + chr1_1:43017373-43017392 None:intergenic 20.0%
!! ATTAAACTTGGAAATGAATT+AGG - chr1_1:43017372-43017391 Msa0022790:intron 20.0%
!!! TTACAATGATAATGTGTATT+TGG + chr1_1:43018176-43018195 None:intergenic 20.0%
!!! TTATTATTTTTAGCTTGCAA+TGG - chr1_1:43018342-43018361 Msa0022790:intron 20.0%
!!! TATTATTTTTAGCTTGCAAT+GGG - chr1_1:43018343-43018362 Msa0022790:intron 20.0%
!! TCTATTGTAAGAAAAATATG+CGG + chr1_1:43018471-43018490 None:intergenic 20.0%
!!! AAAAATGGGTAATGTTTTTT+CGG - chr1_1:43018551-43018570 Msa0022790:intron 20.0%
!! ATTCAATTGATGAAATGAAA+AGG + chr1_1:43018832-43018851 None:intergenic 20.0%
!! AGAAGTTTGAACAAATAAAT+CGG + chr1_1:43019275-43019294 None:intergenic 20.0%
!! AACATGATTAACCATTATAA+TGG - chr1_1:43019453-43019472 Msa0022790:five_prime_UTR 20.0%
!! TTATATGTAAGGAAAATATG+AGG + chr1_1:43019570-43019589 None:intergenic 20.0%
!! TCATTCAATCATTATATGTA+AGG + chr1_1:43019581-43019600 None:intergenic 20.0%
!!! GTAAAAAGAAGCATATATTT+TGG - chr1_1:43020598-43020617 Msa0022790:five_prime_UTR 20.0%
! AACAGATCTGAACAATAAAA+AGG + chr1_1:43015499-43015518 None:intergenic 25.0%
!!! TCACAGTTTTTAAGTCAAAA+AGG + chr1_1:43016192-43016211 None:intergenic 25.0%
!! TTAATACTATGTTTTGCCAT+TGG - chr1_1:43016407-43016426 Msa0022790:intron 25.0%
! GAAAATGAACTCAAAGTTAA+GGG + chr1_1:43016492-43016511 None:intergenic 25.0%
! AGAAAATGAACTCAAAGTTA+AGG + chr1_1:43016493-43016512 None:intergenic 25.0%
!! ATTTTCCTAAGAGTTTAAGA+AGG - chr1_1:43016526-43016545 Msa0022790:intron 25.0%
!! GAAAATATGAAGAGTATAAG+AGG + chr1_1:43016767-43016786 None:intergenic 25.0%
! AAATGTTAACTTTATGGACA+TGG - chr1_1:43016834-43016853 Msa0022790:intron 25.0%
! TTCTTACATGTAGTAGTATT+TGG + chr1_1:43016918-43016937 None:intergenic 25.0%
!!! GAATACTTTTGTTTTTTACG+GGG - chr1_1:43016993-43017012 Msa0022790:intron 25.0%
!!! TTTTTTCTTCCCACATTTTA+AGG - chr1_1:43017074-43017093 Msa0022790:intron 25.0%
! AGAAGACAAAAAGTAAGATA+AGG - chr1_1:43017271-43017290 Msa0022790:intron 25.0%
! AGATAAGGTTATAAAAGTTC+AGG - chr1_1:43017286-43017305 Msa0022790:intron 25.0%
!! CAAAACTCAAAGTATTAACA+AGG + chr1_1:43017618-43017637 None:intergenic 25.0%
!! AGAATTTGAGTTAAAGTCAA+AGG + chr1_1:43017707-43017726 None:intergenic 25.0%
!! AAGTTTTCAAAAGATGGTTA+TGG - chr1_1:43017806-43017825 Msa0022790:intron 25.0%
!! ATAAGATATTAGCTTCAACA+AGG + chr1_1:43018035-43018054 None:intergenic 25.0%
! TTGTTGAAGCTAATATCTTA+TGG - chr1_1:43018034-43018053 Msa0022790:intron 25.0%
! TACTAGGAGAGTTTATTATA+AGG + chr1_1:43018409-43018428 None:intergenic 25.0%
!!! TAATTTTTGGAGACATCTTA+TGG - chr1_1:43018519-43018538 Msa0022790:intron 25.0%
!!! TTATGGATTAGACAGAAAAA+TGG - chr1_1:43018536-43018555 Msa0022790:intron 25.0%
!!! TATGGATTAGACAGAAAAAT+GGG - chr1_1:43018537-43018556 Msa0022790:intron 25.0%
!! AAAAATTTGGATACCCATTT+TGG + chr1_1:43018661-43018680 None:intergenic 25.0%
! TATTCATCGTTATCAAAAGA+AGG + chr1_1:43018715-43018734 None:intergenic 25.0%
! AGAAAATAAACTCAAAGTGA+AGG + chr1_1:43019025-43019044 None:intergenic 25.0%
!!! AAGTTTTCAAATGTTGGTTA+TGG - chr1_1:43019398-43019417 Msa0022790:exon 25.0%
!! TACTATGAGAGTTTTCTATA+AGG + chr1_1:43019508-43019527 None:intergenic 25.0%
!! ACAGTGATAATGTGTATTAT+GGG + chr1_1:43019927-43019946 None:intergenic 25.0%
!! TACAGTGATAATGTGTATTA+TGG + chr1_1:43019928-43019947 None:intergenic 25.0%
! CAATTGTAGAGTATGAAAAA+TGG - chr1_1:43020529-43020548 Msa0022790:five_prime_UTR 25.0%
AGAGATGAGTTCAAAATTAG+TGG + chr1_1:43015457-43015476 None:intergenic 30.0%
GATCTGAACAATAAAAAGGT+TGG + chr1_1:43015495-43015514 None:intergenic 30.0%
TAATATCACGATCTGATAGA+GGG + chr1_1:43015629-43015648 None:intergenic 30.0%
!!! ATCTTTTTTCATCTATGCTC+CGG + chr1_1:43015731-43015750 None:intergenic 30.0%
!! ACTGTTTTAGATCTAAGCTT+TGG + chr1_1:43015760-43015779 None:intergenic 30.0%
GATTATGCATGTACTTTCAT+TGG - chr1_1:43015823-43015842 Msa0022790:three_prime_UTR 30.0%
!!! ATCTCATTTTGAAGCTGTAT+GGG + chr1_1:43016051-43016070 None:intergenic 30.0%
!!! AATCTCATTTTGAAGCTGTA+TGG + chr1_1:43016052-43016071 None:intergenic 30.0%
GAAAATCTAAGAACACGATA+GGG + chr1_1:43016462-43016481 None:intergenic 30.0%
ATCAACCTTCTTAAACTCTT+AGG + chr1_1:43016534-43016553 None:intergenic 30.0%
!! AAGGTTGATTTCTTTTGAAC+AGG - chr1_1:43016545-43016564 Msa0022790:intron 30.0%
! ATTTCTTTTGAACAGGTGTT+TGG - chr1_1:43016552-43016571 Msa0022790:intron 30.0%
! TTTCTTTTGAACAGGTGTTT+GGG - chr1_1:43016553-43016572 Msa0022790:intron 30.0%
TTAACTTTATGGACATGGTA+AGG - chr1_1:43016839-43016858 Msa0022790:intron 30.0%
TAACTTTATGGACATGGTAA+GGG - chr1_1:43016840-43016859 Msa0022790:intron 30.0%
TTACATGTAGTAGTATTTGG+TGG + chr1_1:43016915-43016934 None:intergenic 30.0%
AAATACAGCTATAGCAGAAA+AGG + chr1_1:43017100-43017119 None:intergenic 30.0%
AGACGATTTACAAATAGTCT+TGG + chr1_1:43017210-43017229 None:intergenic 30.0%
! ATCGTCTTTTGTGAAACTTT+TGG - chr1_1:43017223-43017242 Msa0022790:intron 30.0%
! GTTTAATGGCATCATTTTGA+TGG + chr1_1:43017359-43017378 None:intergenic 30.0%
CAAAATGATGCCATTAAACT+TGG - chr1_1:43017360-43017379 Msa0022790:intron 30.0%
!!! TTATCTGTTTTTTGTGGAAG+AGG - chr1_1:43017434-43017453 Msa0022790:intron 30.0%
TTCAGAAGCAATGTTGTAAA+GGG + chr1_1:43017670-43017689 None:intergenic 30.0%
ATTCAGAAGCAATGTTGTAA+AGG + chr1_1:43017671-43017690 None:intergenic 30.0%
TTTGTTACACAAGGTTTCAT+GGG + chr1_1:43017750-43017769 None:intergenic 30.0%
!! CCATCTTTTGAAAACTTTTG+TGG + chr1_1:43017803-43017822 None:intergenic 30.0%
! CCACAAAAGTTTTCAAAAGA+TGG - chr1_1:43017800-43017819 Msa0022790:intron 30.0%
TTTAATCTACACAAATCTGC+AGG - chr1_1:43018070-43018089 Msa0022790:intron 30.0%
AATGAGAAAGAACACAAAAG+TGG + chr1_1:43018274-43018293 None:intergenic 30.0%
TCTTACAATAGACACATGTT+TGG - chr1_1:43018479-43018498 Msa0022790:intron 30.0%
! TAACGATGAATACCTTTTTC+CGG - chr1_1:43018723-43018742 Msa0022790:intron 30.0%
CAGTTATGAAAAAGGAATAC+CGG + chr1_1:43018745-43018764 None:intergenic 30.0%
CACAAATTCCACATAATCAA+GGG + chr1_1:43018889-43018908 None:intergenic 30.0%
TAAAAGCAATACAAAGCCAA+AGG + chr1_1:43018989-43019008 None:intergenic 30.0%
AGTGTTGTAAAGGGAAAATT+TGG + chr1_1:43019207-43019226 None:intergenic 30.0%
TTTGGAAGTAGTGTTGTAAA+GGG + chr1_1:43019216-43019235 None:intergenic 30.0%
ATTTGGAAGTAGTGTTGTAA+AGG + chr1_1:43019217-43019236 None:intergenic 30.0%
TACAACACTACTTCCAAATT+TGG - chr1_1:43019218-43019237 Msa0022790:intron 30.0%
AAGGAAACAACAACCAAATT+TGG + chr1_1:43019234-43019253 None:intergenic 30.0%
!! TAAATCGGATTTTGAGTCAT+AGG + chr1_1:43019260-43019279 None:intergenic 30.0%
GAAAACTTATGAGCATATGT+TGG + chr1_1:43019386-43019405 None:intergenic 30.0%
! GCTCATAAGTTTTCAAATGT+TGG - chr1_1:43019392-43019411 Msa0022790:exon 30.0%
AGGTATGGCAAAAGAAAAAT+TGG + chr1_1:43019488-43019507 None:intergenic 30.0%
! TGAGAGTTTTCTATAAGGTA+TGG + chr1_1:43019503-43019522 None:intergenic 30.0%
GAAAATATGAGGAATCCAAA+AGG + chr1_1:43019559-43019578 None:intergenic 30.0%
AGACACATGTTTAGTAACAT+TGG - chr1_1:43019709-43019728 Msa0022790:intron 30.0%
!! TTGATTGTTTTGTGCAGAAT+AGG - chr1_1:43020083-43020102 Msa0022790:intron 30.0%
!! TGATTGTTTTGTGCAGAATA+GGG - chr1_1:43020084-43020103 Msa0022790:intron 30.0%
! TAGTACAAAACAGAGGTATA+TGG + chr1_1:43020166-43020185 None:intergenic 30.0%
ACATTCTTAGTACAAAACAG+AGG + chr1_1:43020173-43020192 None:intergenic 30.0%
ACTCTGCATAAGACAATAAT+GGG - chr1_1:43020208-43020227 Msa0022790:intron 30.0%
TTGCCTTTAAATACTACATG+AGG - chr1_1:43020651-43020670 Msa0022790:five_prime_UTR 30.0%
TGCCTTTAAATACTACATGA+GGG - chr1_1:43020652-43020671 Msa0022790:five_prime_UTR 30.0%
TTCCCTCATGTAGTATTTAA+AGG + chr1_1:43020657-43020676 None:intergenic 30.0%
GTTCAAAATTAGTGGTGGTA+TGG + chr1_1:43015449-43015468 None:intergenic 35.0%
GATGAGTTCAAAATTAGTGG+TGG + chr1_1:43015454-43015473 None:intergenic 35.0%
CTAATATCACGATCTGATAG+AGG + chr1_1:43015630-43015649 None:intergenic 35.0%
TTCATTTCTGTGTGTGGTTA+AGG + chr1_1:43015694-43015713 None:intergenic 35.0%
! AGCTTAGATCTAAAACAGTG+AGG - chr1_1:43015761-43015780 Msa0022790:three_prime_UTR 35.0%
! GCTTAGATCTAAAACAGTGA+GGG - chr1_1:43015762-43015781 Msa0022790:three_prime_UTR 35.0%
! CATTAGGTTCAATCGATTCA+AGG + chr1_1:43015943-43015962 None:intergenic 35.0%
GAATCGATTGAACCTAATGT+CGG - chr1_1:43015944-43015963 Msa0022790:three_prime_UTR 35.0%
AATCGATTGAACCTAATGTC+GGG - chr1_1:43015945-43015964 Msa0022790:three_prime_UTR 35.0%
!! TAGAGTCTGAGATTGAGTTT+TGG - chr1_1:43015991-43016010 Msa0022790:three_prime_UTR 35.0%
!!! AGTTTTGGAACGTCTTGTTT+TGG - chr1_1:43016006-43016025 Msa0022790:three_prime_UTR 35.0%
!! TTGGTAATACACTCCTCTTT+TGG - chr1_1:43016025-43016044 Msa0022790:three_prime_UTR 35.0%
AAATAAAAAAGGACGGGGAA+TGG - chr1_1:43016090-43016109 Msa0022790:three_prime_UTR 35.0%
AATAAAAAAGGACGGGGAAT+GGG - chr1_1:43016091-43016110 Msa0022790:three_prime_UTR 35.0%
GGAAAATCTAAGAACACGAT+AGG + chr1_1:43016463-43016482 None:intergenic 35.0%
ACTCAAAGTTAAGGGAAAGT+GGG + chr1_1:43016484-43016503 None:intergenic 35.0%
AACTCAAAGTTAAGGGAAAG+TGG + chr1_1:43016485-43016504 None:intergenic 35.0%
! TTCTTTTGAACAGGTGTTTG+GGG - chr1_1:43016554-43016573 Msa0022790:intron 35.0%
AAATTCAGGAAACCCATTCA+TGG - chr1_1:43016677-43016696 Msa0022790:intron 35.0%
CATTTCATACTGTTCGTTTC+AGG + chr1_1:43016819-43016838 None:intergenic 35.0%
GGATATGCAAGTGAATAAGA+TGG - chr1_1:43016875-43016894 Msa0022790:intron 35.0%
!! ATTTAGGCTTTATTTGGGGA+AGG - chr1_1:43016950-43016969 Msa0022790:CDS 35.0%
!!! ACTTTTGTTTTTTACGGGGA+AGG - chr1_1:43016997-43017016 Msa0022790:intron 35.0%
CTTTATATTCCTGACCTACA+CGG - chr1_1:43017041-43017060 Msa0022790:intron 35.0%
CAGAAAAGGCCTTAAAATGT+GGG + chr1_1:43017086-43017105 None:intergenic 35.0%
AATTCGTTGCAAACTTCAGT+TGG - chr1_1:43017499-43017518 Msa0022790:intron 35.0%
ATTCGTTGCAAACTTCAGTT+GGG - chr1_1:43017500-43017519 Msa0022790:intron 35.0%
TACAACATTGCTTCTGAATC+TGG - chr1_1:43017672-43017691 Msa0022790:intron 35.0%
! GTTTGTTACACAAGGTTTCA+TGG + chr1_1:43017751-43017770 None:intergenic 35.0%
GACTAAGAGAGTCGATTAAA+AGG + chr1_1:43017866-43017885 None:intergenic 35.0%
CTTCATCTCATAGTTTCTCA+AGG + chr1_1:43018101-43018120 None:intergenic 35.0%
CTTGAGAAACTATGAGATGA+AGG - chr1_1:43018099-43018118 Msa0022790:intron 35.0%
AGAAAGAACACAAAAGTGGA+AGG + chr1_1:43018270-43018289 None:intergenic 35.0%
!!! TTTTAGCTTGCAATGGGTTA+TGG - chr1_1:43018349-43018368 Msa0022790:intron 35.0%
! TTCACGTTCACACTTTTACT+AGG + chr1_1:43018425-43018444 None:intergenic 35.0%
! AGACACATGTTTGGTAACAT+TGG - chr1_1:43018488-43018507 Msa0022790:intron 35.0%
!!! ATTTTGGTTCGATTCTTGCA+TGG + chr1_1:43018645-43018664 None:intergenic 35.0%
ATGCAAGAATCGAACCAAAA+TGG - chr1_1:43018644-43018663 Msa0022790:intron 35.0%
TGCAAGAATCGAACCAAAAT+GGG - chr1_1:43018645-43018664 Msa0022790:intron 35.0%
GAAAAAGGAATACCGGAAAA+AGG + chr1_1:43018738-43018757 None:intergenic 35.0%
CTATGCAGCAGTTATGAAAA+AGG + chr1_1:43018753-43018772 None:intergenic 35.0%
CTTAATCATTATGATGCCCT+TGG + chr1_1:43018797-43018816 None:intergenic 35.0%
ACGTTATTCCCTTGATTATG+TGG - chr1_1:43018878-43018897 Msa0022790:intron 35.0%
CCACAAATTCCACATAATCA+AGG + chr1_1:43018890-43018909 None:intergenic 35.0%
CCTTGATTATGTGGAATTTG+TGG - chr1_1:43018887-43018906 Msa0022790:intron 35.0%
! TTTCTTTTGATCAGGTGGTT+AGG - chr1_1:43019089-43019108 Msa0022790:intron 35.0%
!! GATTTTGAGTCATAGGTCAA+AGG + chr1_1:43019253-43019272 None:intergenic 35.0%
! GAATTCCATTGTATGCCTTT+TGG - chr1_1:43019541-43019560 Msa0022790:intron 35.0%
! TAATTTCTGGAGACGTCTTA+TGG - chr1_1:43019740-43019759 Msa0022790:intron 35.0%
TTTGCGGAATTGTTTGATGA+AGG - chr1_1:43019846-43019865 Msa0022790:intron 35.0%
GACTCTGCATAAGACAATAA+TGG - chr1_1:43020207-43020226 Msa0022790:intron 35.0%
! GTTCCTCCTTCAAGAATTTT+GGG - chr1_1:43020354-43020373 Msa0022790:five_prime_UTR 35.0%
TTGTCTCCCAAAATTCTTGA+AGG + chr1_1:43020363-43020382 None:intergenic 35.0%
!! AATTTTGGGAGACAAAGAAG+AGG - chr1_1:43020368-43020387 Msa0022790:five_prime_UTR 35.0%
CAACTAAGAGCTTATCTCAT+TGG + chr1_1:43020480-43020499 None:intergenic 35.0%
!!! TTTTGGCTTGCAAAATGTGA+TGG - chr1_1:43020615-43020634 Msa0022790:five_prime_UTR 35.0%
AGATATGTAGAGAGAGAGAG+AGG + chr1_1:43015378-43015397 None:intergenic 40.0%
!! AAAGGTTGGCTTTGTAGAGA+AGG + chr1_1:43015481-43015500 None:intergenic 40.0%
! GCAGTTTTCATTTCTGTGTG+TGG + chr1_1:43015700-43015719 None:intergenic 40.0%
! TCAATCGATTCAAGGTGGTT+AGG + chr1_1:43015935-43015954 None:intergenic 40.0%
! TAGGTTCAATCGATTCAAGG+TGG + chr1_1:43015940-43015959 None:intergenic 40.0%
ATAAAAAAGGACGGGGAATG+GGG - chr1_1:43016092-43016111 Msa0022790:three_prime_UTR 40.0%
GTTGAGGATGTTTGCATAGT+TGG - chr1_1:43016592-43016611 Msa0022790:intron 40.0%
AAGTCACAGGTGACAAATTC+AGG - chr1_1:43016663-43016682 Msa0022790:intron 40.0%
TACAGAAGGTCCATCTAGAT+GGG + chr1_1:43016734-43016753 None:intergenic 40.0%
TTACAGAAGGTCCATCTAGA+TGG + chr1_1:43016735-43016754 None:intergenic 40.0%
GAGGAAAGAGAACTTACAGA+AGG + chr1_1:43016748-43016767 None:intergenic 40.0%
GACATGGTAAGGGTTAGAAA+AGG - chr1_1:43016850-43016869 Msa0022790:intron 40.0%
TGGTAAGGGTTAGAAAAGGA+TGG - chr1_1:43016854-43016873 Msa0022790:intron 40.0%
!! GCTTTATTTGGGGAAGGTAA+GGG - chr1_1:43016956-43016975 Msa0022790:CDS 40.0%
GGGAAGGTTGAACTTGATAT+GGG - chr1_1:43017013-43017032 Msa0022790:intron 40.0%
GGAAGGTTGAACTTGATATG+GGG - chr1_1:43017014-43017033 Msa0022790:intron 40.0%
AAAACAAAGAGCTACCGTGT+AGG + chr1_1:43017058-43017077 None:intergenic 40.0%
GCAGAAAAGGCCTTAAAATG+TGG + chr1_1:43017087-43017106 None:intergenic 40.0%
GCCATATCTGACATACAATC+TGG - chr1_1:43017128-43017147 Msa0022790:intron 40.0%
GCCAGATTGTATGTCAGATA+TGG + chr1_1:43017132-43017151 None:intergenic 40.0%
! GAAACTTTTGGCATGTTTGC+AGG - chr1_1:43017235-43017254 Msa0022790:intron 40.0%
!!! TCTGTTTTTTGTGGAAGAGG+TGG - chr1_1:43017437-43017456 Msa0022790:intron 40.0%
! TTTTGTGGAAGAGGTGGAAA+TGG - chr1_1:43017443-43017462 Msa0022790:intron 40.0%
TTCGTTGCAAACTTCAGTTG+GGG - chr1_1:43017501-43017520 Msa0022790:intron 40.0%
! TTGATGCATCGTTTTGCCTT+TGG - chr1_1:43017554-43017573 Msa0022790:intron 40.0%
GAGCAGAAACACAAATCCAA+AGG + chr1_1:43017573-43017592 None:intergenic 40.0%
!! AAGGGATAATTTGCTACCTC+TGG + chr1_1:43017652-43017671 None:intergenic 40.0%
! GTGAGTGTGTTTGTTACACA+AGG + chr1_1:43017759-43017778 None:intergenic 40.0%
AGAGAGTCGATTAAAAGGCA+TGG + chr1_1:43017861-43017880 None:intergenic 40.0%
GAATTCCATTGCATGCTTCT+AGG - chr1_1:43017899-43017918 Msa0022790:intron 40.0%
GAATTCCATTGTATGCCTCA+TGG - chr1_1:43018442-43018461 Msa0022790:intron 40.0%
AAAAATATGCGGAGTCCATG+AGG + chr1_1:43018460-43018479 None:intergenic 40.0%
! CTGCTGCATAGATCTTTTTG+TGG - chr1_1:43018762-43018781 Msa0022790:intron 40.0%
! TTTTGTGGCAGCTAAATCCA+AGG - chr1_1:43018777-43018796 Msa0022790:intron 40.0%
TTTGTGGCAGCTAAATCCAA+GGG - chr1_1:43018778-43018797 Msa0022790:intron 40.0%
ACATTGTTTGCCTTTGCCTT+TGG - chr1_1:43018970-43018989 Msa0022790:intron 40.0%
CAATACAAAGCCAAAGGCAA+AGG + chr1_1:43018983-43019002 None:intergenic 40.0%
TCTCGCAACAGTATAAGAGA+CGG - chr1_1:43019062-43019081 Msa0022790:intron 40.0%
!! CTCAAGCTTGTTGCATATGT+TGG - chr1_1:43019113-43019132 Msa0022790:intron 40.0%
TGTTAGTGTTGCAAAGTCAG+AGG - chr1_1:43019179-43019198 Msa0022790:intron 40.0%
GGCTTGCAAGTCCATTATAA+TGG + chr1_1:43019467-43019486 None:intergenic 40.0%
! GGAATCCAAAAGGCATACAA+TGG + chr1_1:43019549-43019568 None:intergenic 40.0%
! AAACAATTCCGCAAAGCGTT+TGG + chr1_1:43019841-43019860 None:intergenic 40.0%
ATCACATCTGCAGATTTGTG+TGG + chr1_1:43019874-43019893 None:intergenic 40.0%
ACAAATCTGCAGATGTGATG+AGG - chr1_1:43019875-43019894 Msa0022790:intron 40.0%
! GGTTCCTCCTTCAAGAATTT+TGG - chr1_1:43020353-43020372 Msa0022790:five_prime_UTR 40.0%
TCTCCCAAAATTCTTGAAGG+AGG + chr1_1:43020360-43020379 None:intergenic 40.0%
! AGAGGCATAAAGTTGCATGA+TGG - chr1_1:43020386-43020405 Msa0022790:five_prime_UTR 40.0%
ACAGAGAGTCATAGAGACGT+TGG + chr1_1:43015333-43015352 None:intergenic 45.0%
GTCCTCCATTCAAACGAACA+CGG + chr1_1:43015578-43015597 None:intergenic 45.0%
ACGATCTGATAGAGGGTTGT+CGG + chr1_1:43015622-43015641 None:intergenic 45.0%
TATTAGACGCCTAGAAGCGA+CGG - chr1_1:43015644-43015663 Msa0022790:three_prime_UTR 45.0%
AAGGTCTTAGAAGCTGTCGT+AGG + chr1_1:43015675-43015694 None:intergenic 45.0%
ATGAAAACTGCAGACGACAC+CGG - chr1_1:43015709-43015728 Msa0022790:three_prime_UTR 45.0%
GAACCTAATGTCGGGATTTG+CGG - chr1_1:43015953-43015972 Msa0022790:three_prime_UTR 45.0%
AACCTAATGTCGGGATTTGC+GGG - chr1_1:43015954-43015973 Msa0022790:three_prime_UTR 45.0%
AGAGAAGAACGCAAAGCCAA+TGG + chr1_1:43016426-43016445 None:intergenic 45.0%
! ATAGTTGGTGCTCCAATGCA+GGG - chr1_1:43016607-43016626 Msa0022790:intron 45.0%
! GAGTGTACTTTTCCCTGCAT+TGG + chr1_1:43016622-43016641 None:intergenic 45.0%
TGTTAGTGCTGCAAAGTCAC+AGG - chr1_1:43016650-43016669 Msa0022790:intron 45.0%
AGGAAACCCATTCATGGACT+GGG - chr1_1:43016683-43016702 Msa0022790:intron 45.0%
ACCATTTCTCCCCATCTAGA+TGG - chr1_1:43016721-43016740 Msa0022790:intron 45.0%
TCCATCTAGATGGGGAGAAA+TGG + chr1_1:43016725-43016744 None:intergenic 45.0%
ACAGAAGGTCCATCTAGATG+GGG + chr1_1:43016733-43016752 None:intergenic 45.0%
!! GGCTTTATTTGGGGAAGGTA+AGG - chr1_1:43016955-43016974 Msa0022790:CDS 45.0%
GGGGAAGGTTGAACTTGATA+TGG - chr1_1:43017012-43017031 Msa0022790:intron 45.0%
GGTTGAACTTGATATGGGGA+AGG - chr1_1:43017018-43017037 Msa0022790:intron 45.0%
TGTCTTTGTGGAAGTAGTCC+TGG - chr1_1:43017317-43017336 Msa0022790:intron 45.0%
TCGTTGCAAACTTCAGTTGG+GGG - chr1_1:43017502-43017521 Msa0022790:intron 45.0%
! TTTTGCTAGTGCAAAGCCAG+AGG - chr1_1:43017633-43017652 Msa0022790:intron 45.0%
! CAAGTCCTAGAAGCATGCAA+TGG + chr1_1:43017907-43017926 None:intergenic 45.0%
AGCTGTCAAAGCTACTGATG+AGG - chr1_1:43018122-43018141 Msa0022790:intron 45.0%
!!! ACGGCTGGTTTCTTTTGATC+AGG - chr1_1:43019081-43019100 Msa0022790:intron 45.0%
!! GCTGGTTTCTTTTGATCAGG+TGG - chr1_1:43019084-43019103 Msa0022790:intron 45.0%
TTCTTGTCGACATACCTGCT+TGG - chr1_1:43019808-43019827 Msa0022790:intron 45.0%
GCTTGCAAAATGTGATGGCA+AGG - chr1_1:43020620-43020639 Msa0022790:five_prime_UTR 45.0%
CAAAATGTGATGGCAAGGCA+AGG - chr1_1:43020625-43020644 Msa0022790:five_prime_UTR 45.0%
AGAAAGAGCCTTGGAGAGAA+AGG - chr1_1:43020723-43020742 Msa0022790:five_prime_UTR 45.0%
!! AATAAATGAATAAATAATAA+TGG - chr1_1:43016123-43016142 Msa0022790:exon 5.0%
!!! TAAGATTTTTTTTTAAAAAA+GGG + chr1_1:43017534-43017553 None:intergenic 5.0%
!!! ATAAGATTTTTTTTTAAAAA+AGG + chr1_1:43017535-43017554 None:intergenic 5.0%
!! AATAATAACAATAATAATAT+AGG - chr1_1:43019609-43019628 Msa0022790:intron 5.0%
!! TAATTATAAATATAATTGTT+AGG - chr1_1:43020240-43020259 Msa0022790:intron 5.0%
!! AATTATAAATATAATTGTTA+GGG - chr1_1:43020241-43020260 Msa0022790:intron 5.0%
AATGTTGAGGCGGCTGTGTT+TGG + chr1_1:43015404-43015423 None:intergenic 50.0%
AGTGGTGGTATGGCCTAAGA+AGG + chr1_1:43015439-43015458 None:intergenic 50.0%
GGTGGCAGGATAAATGAACG+CGG + chr1_1:43015546-43015565 None:intergenic 50.0%
GTTCATTTATCCTGCCACCG+TGG - chr1_1:43015547-43015566 Msa0022790:three_prime_UTR 50.0%
ATCCGCCGTGTTCGTTTGAA+TGG - chr1_1:43015570-43015589 Msa0022790:three_prime_UTR 50.0%
CTCCATTCAAACGAACACGG+CGG + chr1_1:43015575-43015594 None:intergenic 50.0%
TAGAGGGTTGTCGGTAGTAG+TGG + chr1_1:43015613-43015632 None:intergenic 50.0%
TTCCCGCAAATCCCGACATT+AGG + chr1_1:43015959-43015978 None:intergenic 50.0%
GAAGCTGTATGGGCCAAAAG+AGG + chr1_1:43016041-43016060 None:intergenic 50.0%
CAAACATCCTCAACCAGCGT+GGG + chr1_1:43016586-43016605 None:intergenic 50.0%
! CATAGTTGGTGCTCCAATGC+AGG - chr1_1:43016606-43016625 Msa0022790:intron 50.0%
CAGGAAACCCATTCATGGAC+TGG - chr1_1:43016682-43016701 Msa0022790:intron 50.0%
! GGAAACCCATTCATGGACTG+GGG - chr1_1:43016684-43016703 Msa0022790:intron 50.0%
TCATGCCCCAGTCCATGAAT+GGG + chr1_1:43016692-43016711 None:intergenic 50.0%
ATCATGCCCCAGTCCATGAA+TGG + chr1_1:43016693-43016712 None:intergenic 50.0%
AAAGAGCTACCGTGTAGGTC+AGG + chr1_1:43017053-43017072 None:intergenic 50.0%
TTTGTGGAAGTAGTCCTGGC+AGG - chr1_1:43017321-43017340 Msa0022790:intron 50.0%
CGTTGCAAACTTCAGTTGGG+GGG - chr1_1:43017503-43017522 Msa0022790:intron 50.0%
GGAGTCCATGAGGCATACAA+TGG + chr1_1:43018450-43018469 None:intergenic 50.0%
GCAACAGTATAAGAGACGGC+TGG - chr1_1:43019066-43019085 Msa0022790:intron 50.0%
GCTGCTATCCAAACGCTTTG+CGG - chr1_1:43019830-43019849 Msa0022790:intron 50.0%
GCCTTCATACTGCTTTCTGC+TGG - chr1_1:43020327-43020346 Msa0022790:intron 50.0%
GCCAGCAGAAAGCAGTATGA+AGG + chr1_1:43020331-43020350 None:intergenic 50.0%
CGAAAGAGCCTTGGAGAGAA+AGG - chr1_1:43020678-43020697 Msa0022790:five_prime_UTR 50.0%
AGAGCCTTGGAGAGAAAGGA+AGG - chr1_1:43020682-43020701 Msa0022790:five_prime_UTR 50.0%
GAGCCTTGGAGAGAAAGGAA+GGG - chr1_1:43020683-43020702 Msa0022790:five_prime_UTR 50.0%
AAGCCCTTCCTTTCTCTCCA+AGG + chr1_1:43020689-43020708 None:intergenic 50.0%
TTGGAGAGAAAGGAAGGGCT+TGG - chr1_1:43020688-43020707 Msa0022790:five_prime_UTR 50.0%
GTGAGAGAGAGAAAGAGCCT+TGG - chr1_1:43020714-43020733 Msa0022790:five_prime_UTR 50.0%
AGAATTTGCAGTGCAGCGCA+GGG + chr1_1:43020749-43020768 None:intergenic 50.0%
GTATGGCCTAAGAAGGCTGC+CGG + chr1_1:43015432-43015451 None:intergenic 55.0%
AAACGAACACGGCGGATCCA+CGG + chr1_1:43015567-43015586 None:intergenic 55.0%
CGCCGTGTTCGTTTGAATGG+AGG - chr1_1:43015573-43015592 Msa0022790:three_prime_UTR 55.0%
TAGGTACCACCGTCGCTTCT+AGG + chr1_1:43015656-43015675 None:intergenic 55.0%
! TTTGGGGTTAGAACCCACGC+TGG - chr1_1:43016570-43016589 Msa0022790:intron 55.0%
! GTTAGAACCCACGCTGGTTG+AGG - chr1_1:43016576-43016595 Msa0022790:intron 55.0%
GCAAACATCCTCAACCAGCG+TGG + chr1_1:43016587-43016606 None:intergenic 55.0%
! CAGGAGAGCACGTGTCTTTG+TGG - chr1_1:43017305-43017324 Msa0022790:intron 55.0%
TGGAAGTAGTCCTGGCAGGA+AGG - chr1_1:43017325-43017344 Msa0022790:intron 55.0%
CGTTTGGATAGCAGCCAAGC+AGG + chr1_1:43019825-43019844 None:intergenic 55.0%
CATACTGCTTTCTGCTGGCG+TGG - chr1_1:43020332-43020351 Msa0022790:five_prime_UTR 55.0%
TGAGGGAAGCGAAAGAGCCT+TGG - chr1_1:43020669-43020688 Msa0022790:five_prime_UTR 55.0%
CAGAATTTGCAGTGCAGCGC+AGG + chr1_1:43020750-43020769 None:intergenic 55.0%
GTTGAGGCGGCTGTGTTTGG+TGG + chr1_1:43015401-43015420 None:intergenic 60.0%
GCCGCCTCAACATTGCCATC+CGG - chr1_1:43015410-43015429 Msa0022790:three_prime_UTR 60.0%
GCCGGATGGCAATGTTGAGG+CGG + chr1_1:43015414-43015433 None:intergenic 60.0%
GCTGCCGGATGGCAATGTTG+AGG + chr1_1:43015417-43015436 None:intergenic 60.0%
TGCCATCCGGCAGCCTTCTT+AGG - chr1_1:43015423-43015442 Msa0022790:three_prime_UTR 60.0%
TAGACGCCTAGAAGCGACGG+TGG - chr1_1:43015647-43015666 Msa0022790:three_prime_UTR 60.0%
GGCTACTCTTCCTTCCTGCC+AGG + chr1_1:43017338-43017357 None:intergenic 60.0%
GGCCTAAGAAGGCTGCCGGA+TGG + chr1_1:43015428-43015447 None:intergenic 65.0%
GCGCAGGGCCTTTCTCTCCA+AGG + chr1_1:43020734-43020753 None:intergenic 65.0%
CGAACACGGCGGATCCACGG+TGG + chr1_1:43015564-43015583 None:intergenic 70.0%
CACGGCGGATCCACGGTGGC+AGG + chr1_1:43015560-43015579 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 43015324 43020781 43015324 ID=Msa0022790;Name=Msa0022790
chr1_1 mRNA 43015324 43020781 43015324 ID=Msa0022790-mRNA-1;Parent=Msa0022790;Name=Msa0022790-mRNA-1;_AED=0.10;_eAED=0.10;_QI=583|0.6|0.83|1|0|0|6|786|134
chr1_1 exon 43015324 43015493 43015324 ID=Msa0022790-mRNA-1:exon:12543;Parent=Msa0022790-mRNA-1
chr1_1 exon 43015515 43016303 43015515 ID=Msa0022790-mRNA-1:exon:12542;Parent=Msa0022790-mRNA-1
chr1_1 exon 43016926 43017002 43016926 ID=Msa0022790-mRNA-1:exon:12541;Parent=Msa0022790-mRNA-1
chr1_1 exon 43017914 43018013 43017914 ID=Msa0022790-mRNA-1:exon:12540;Parent=Msa0022790-mRNA-1
chr1_1 exon 43019355 43019538 43019355 ID=Msa0022790-mRNA-1:exon:12539;Parent=Msa0022790-mRNA-1
chr1_1 exon 43020328 43020781 43020328 ID=Msa0022790-mRNA-1:exon:12538;Parent=Msa0022790-mRNA-1
chr1_1 five_prime_UTR 43020328 43020781 43020328 ID=Msa0022790-mRNA-1:five_prime_utr;Parent=Msa0022790-mRNA-1
chr1_1 five_prime_UTR 43019410 43019538 43019410 ID=Msa0022790-mRNA-1:five_prime_utr;Parent=Msa0022790-mRNA-1
chr1_1 CDS 43019355 43019409 43019355 ID=Msa0022790-mRNA-1:cds;Parent=Msa0022790-mRNA-1
chr1_1 CDS 43017914 43018013 43017914 ID=Msa0022790-mRNA-1:cds;Parent=Msa0022790-mRNA-1
chr1_1 CDS 43016926 43017002 43016926 ID=Msa0022790-mRNA-1:cds;Parent=Msa0022790-mRNA-1
chr1_1 CDS 43016131 43016303 43016131 ID=Msa0022790-mRNA-1:cds;Parent=Msa0022790-mRNA-1
chr1_1 three_prime_UTR 43015515 43016130 43015515 ID=Msa0022790-mRNA-1:three_prime_utr;Parent=Msa0022790-mRNA-1
chr1_1 three_prime_UTR 43015324 43015493 43015324 ID=Msa0022790-mRNA-1:three_prime_utr;Parent=Msa0022790-mRNA-1
Gene Sequence

>Msa0022790

ATGGACTGGGGCATGATAAGAGACAACCATTTCTCCCCATCTAGATGGACCTTCTGTGACACCTTGAGAAACTATGAGATGAAGGAGCTGTCAAAGCTACTGATGAGGACTTGTTTACATGCTTGCTTGCTGCTGTCCAAATACACATTATCATTGTGGTTAGGACTCAAGCTTGTTGCATATGTTGGTATAGTTGATGCTTCAAATGAAGAAAAGCACAATTTTGAGCTTTATCATATTCTTGTCGACATACCTGCTTGGCTGCTATCCAAACGCTTTGCGGAATTGTTTGATGAAGGATCCACACAAATCTGCAGATGTGATGAGGACTTGTTACATGCTTGTTTGCTGCTGCCCATAATACACATTATCACTGTAAGTAAAAAAATGAAAACAATTGTGTAG
Protein sequence

>Msa0022790

MDWGMIRDNHFSPSRWTFCDTLRNYEMKELSKLLMRTCLHACLLLSKYTLSLWLGLKLVAYVGIVDASNEEKHNFELYHILVDIPAWLLSKRFAELFDEGSTQICRCDEDLLHACLLLPIIHIITVSKKMKTIV*