AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0022850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 98 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTCCTCCTTCAAGAATTT+TGG 0.171282 1_1:-43127833 Msa0022850:three_prime_UTR
TTCCCTCATGTAGTATTTAA+AGG 0.173459 1_1:+43127532 None:intergenic
TTACAATGATAATGTGTATT+TGG 0.176865 1_1:+43130013 None:intergenic
TACAGTGATAATGTGTATTA+TGG 0.178827 1_1:+43128261 None:intergenic
AAGTCACAGGTGACAAATTC+AGG 0.286926 1_1:-43131518 Msa0022850:five_prime_UTR
CAGAATTTGCAGTGCAGCGC+AGG 0.294148 1_1:+43127439 None:intergenic
TTCATTTCTGTGTGTGGTTA+AGG 0.294857 1_1:+43132490 None:intergenic
TAATTATAAATATAATTGTT+AGG 0.307154 1_1:-43127946 Msa0022850:three_prime_UTR
GTTGAGGATGTTTGCATAGT+TGG 0.318206 1_1:-43131589 Msa0022850:five_prime_UTR
AACAGATCTGAACAATAAAA+AGG 0.324414 1_1:+43132685 None:intergenic
GACTCTGCATAAGACAATAA+TGG 0.355828 1_1:-43127979 Msa0022850:three_prime_UTR
ATCCGCCGTGTTCGTTTGAA+TGG 0.359236 1_1:-43132611 Msa0022850:five_prime_UTR
AAACAATTCCGCAAAGCGTT+TGG 0.366269 1_1:+43128348 None:intergenic
TAGGTACCACCGTCGCTTCT+AGG 0.379077 1_1:+43132528 None:intergenic
ACCATTTCTCCCCATCTAGA+TGG 0.390770 1_1:-43131460 Msa0022850:CDS
TTACAGAAGGTCCATCTAGA+TGG 0.393898 1_1:+43131449 None:intergenic
AATGTTGAGGCGGCTGTGTT+TGG 0.404045 1_1:+43132780 None:intergenic
TGCCATCCGGCAGCCTTCTT+AGG 0.405515 1_1:-43132758 Msa0022850:five_prime_UTR
TTGTCTCCCAAAATTCTTGA+AGG 0.413650 1_1:+43127826 None:intergenic
TAGTACAAAACAGAGGTATA+TGG 0.414342 1_1:+43128023 None:intergenic
CGAAAGAGCCTTGGAGAGAA+AGG 0.423381 1_1:-43127508 Msa0022850:three_prime_UTR
AGAGATGAGTTCAAAATTAG+TGG 0.424415 1_1:+43132727 None:intergenic
AGAAAGAGCCTTGGAGAGAA+AGG 0.426750 1_1:-43127463 Msa0022850:three_prime_UTR
ACTCTGCATAAGACAATAAT+GGG 0.428670 1_1:-43127978 Msa0022850:three_prime_UTR
CATAGTTGGTGCTCCAATGC+AGG 0.438314 1_1:-43131575 Msa0022850:five_prime_UTR
GCCTTCATACTGCTTTCTGC+TGG 0.438656 1_1:-43127859 Msa0022850:three_prime_UTR
AATTATAAATATAATTGTTA+GGG 0.440124 1_1:-43127945 Msa0022850:three_prime_UTR
ACAGTGATAATGTGTATTAT+GGG 0.445189 1_1:+43128262 None:intergenic
ATCATGCCCCAGTCCATGAA+TGG 0.447124 1_1:+43131491 None:intergenic
GCTGCTATCCAAACGCTTTG+CGG 0.447265 1_1:-43128356 Msa0022850:CDS
TCCATCTAGATGGGGAGAAA+TGG 0.448127 1_1:+43131459 None:intergenic
CTCAAGCTTGTTGCATATGT+TGG 0.452344 1_1:-43129073 Msa0022850:CDS
CAACTAAGAGCTTATCTCAT+TGG 0.455962 1_1:+43127709 None:intergenic
CTAATATCACGATCTGATAG+AGG 0.463081 1_1:+43132554 None:intergenic
TTGGAGAGAAAGGAAGGGCT+TGG 0.464845 1_1:-43127498 Msa0022850:three_prime_UTR
AAATTCAGGAAACCCATTCA+TGG 0.464931 1_1:-43131504 Msa0022850:exon
TTTGCGGAATTGTTTGATGA+AGG 0.478173 1_1:-43128340 Msa0022850:CDS
AAAGGTTGGCTTTGTAGAGA+AGG 0.479190 1_1:+43132703 None:intergenic
GTTAGAACCCACGCTGGTTG+AGG 0.491363 1_1:-43131605 Msa0022850:five_prime_UTR
AAGCCCTTCCTTTCTCTCCA+AGG 0.495149 1_1:+43127500 None:intergenic
CAGGAAACCCATTCATGGAC+TGG 0.498843 1_1:-43131499 Msa0022850:exon
GCCGCCTCAACATTGCCATC+CGG 0.503285 1_1:-43132771 Msa0022850:five_prime_UTR
AGGAAACCCATTCATGGACT+GGG 0.506394 1_1:-43131498 Msa0022850:exon
CTTCATCTCATAGTTTCTCA+AGG 0.506698 1_1:+43130088 None:intergenic
TGAGGGAAGCGAAAGAGCCT+TGG 0.511561 1_1:-43127517 Msa0022850:three_prime_UTR
GTTGAGGCGGCTGTGTTTGG+TGG 0.512688 1_1:+43132783 None:intergenic
TCATGCCCCAGTCCATGAAT+GGG 0.513202 1_1:+43131492 None:intergenic
GTTCAAAATTAGTGGTGGTA+TGG 0.514683 1_1:+43132735 None:intergenic
CGTTTGGATAGCAGCCAAGC+AGG 0.516208 1_1:+43128364 None:intergenic
CTTGAGAAACTATGAGATGA+AGG 0.518610 1_1:-43130087 Msa0022850:CDS
ACGATCTGATAGAGGGTTGT+CGG 0.521070 1_1:+43132562 None:intergenic
TACAGAAGGTCCATCTAGAT+GGG 0.521806 1_1:+43131450 None:intergenic
GCGCAGGGCCTTTCTCTCCA+AGG 0.526608 1_1:+43127455 None:intergenic
CACGGCGGATCCACGGTGGC+AGG 0.528805 1_1:+43132624 None:intergenic
TTGCCTTTAAATACTACATG+AGG 0.534140 1_1:-43127535 Msa0022850:three_prime_UTR
CGCCGTGTTCGTTTGAATGG+AGG 0.537898 1_1:-43132608 Msa0022850:five_prime_UTR
TTCTTGTCGACATACCTGCT+TGG 0.538298 1_1:-43128378 Msa0022850:CDS
AGAGCCTTGGAGAGAAAGGA+AGG 0.541262 1_1:-43127504 Msa0022850:three_prime_UTR
GTGAGAGAGAGAAAGAGCCT+TGG 0.551422 1_1:-43127472 Msa0022850:three_prime_UTR
TCTCCCAAAATTCTTGAAGG+AGG 0.552827 1_1:+43127829 None:intergenic
AGTGGTGGTATGGCCTAAGA+AGG 0.554829 1_1:+43132745 None:intergenic
GTATGGCCTAAGAAGGCTGC+CGG 0.565972 1_1:+43132752 None:intergenic
GCCAGCAGAAAGCAGTATGA+AGG 0.568670 1_1:+43127858 None:intergenic
TAGAGGGTTGTCGGTAGTAG+TGG 0.576250 1_1:+43132571 None:intergenic
AGAATTTGCAGTGCAGCGCA+GGG 0.576307 1_1:+43127440 None:intergenic
CATACTGCTTTCTGCTGGCG+TGG 0.581915 1_1:-43127854 Msa0022850:three_prime_UTR
CAAAATGTGATGGCAAGGCA+AGG 0.585482 1_1:-43127561 Msa0022850:three_prime_UTR
AGAGGCATAAAGTTGCATGA+TGG 0.590712 1_1:-43127800 Msa0022850:three_prime_UTR
AAACGAACACGGCGGATCCA+CGG 0.597311 1_1:+43132617 None:intergenic
ACAGAGAGTCATAGAGACGT+TGG 0.601431 1_1:+43132851 None:intergenic
ATGAAAACTGCAGACGACAC+CGG 0.609180 1_1:-43132472 Msa0022850:five_prime_UTR
TGTTAGTGCTGCAAAGTCAC+AGG 0.610160 1_1:-43131531 Msa0022850:five_prime_UTR
TGCCTTTAAATACTACATGA+GGG 0.610711 1_1:-43127534 Msa0022850:three_prime_UTR
GCCGGATGGCAATGTTGAGG+CGG 0.611490 1_1:+43132770 None:intergenic
GCTTGCAAAATGTGATGGCA+AGG 0.615832 1_1:-43127566 Msa0022850:three_prime_UTR
GGCCTAAGAAGGCTGCCGGA+TGG 0.619680 1_1:+43132756 None:intergenic
ATCACATCTGCAGATTTGTG+TGG 0.619954 1_1:+43128315 None:intergenic
ATAGTTGGTGCTCCAATGCA+GGG 0.620045 1_1:-43131574 Msa0022850:five_prime_UTR
TAATATCACGATCTGATAGA+GGG 0.623312 1_1:+43132555 None:intergenic
ACAAATCTGCAGATGTGATG+AGG 0.630753 1_1:-43128311 Msa0022850:CDS
GATGAGTTCAAAATTAGTGG+TGG 0.631675 1_1:+43132730 None:intergenic
GAGCCTTGGAGAGAAAGGAA+GGG 0.646139 1_1:-43127503 Msa0022850:three_prime_UTR
GTCCTCCATTCAAACGAACA+CGG 0.653128 1_1:+43132606 None:intergenic
CAAACATCCTCAACCAGCGT+GGG 0.654114 1_1:+43131598 None:intergenic
GCTGCCGGATGGCAATGTTG+AGG 0.658758 1_1:+43132767 None:intergenic
GCAAACATCCTCAACCAGCG+TGG 0.659050 1_1:+43131597 None:intergenic
AGCTGTCAAAGCTACTGATG+AGG 0.663227 1_1:-43130064 Msa0022850:CDS
AAGGTCTTAGAAGCTGTCGT+AGG 0.673848 1_1:+43132509 None:intergenic
TATTAGACGCCTAGAAGCGA+CGG 0.676167 1_1:-43132537 Msa0022850:five_prime_UTR
GGAAACCCATTCATGGACTG+GGG 0.682242 1_1:-43131497 Msa0022850:exon
ACAGAAGGTCCATCTAGATG+GGG 0.687511 1_1:+43131451 None:intergenic
TAGACGCCTAGAAGCGACGG+TGG 0.706943 1_1:-43132534 Msa0022850:five_prime_UTR
TTTGGGGTTAGAACCCACGC+TGG 0.715063 1_1:-43131611 Msa0022850:five_prime_UTR
ACATTCTTAGTACAAAACAG+AGG 0.764301 1_1:+43128016 None:intergenic
GTTCATTTATCCTGCCACCG+TGG 0.766910 1_1:-43132634 Msa0022850:five_prime_UTR
CGAACACGGCGGATCCACGG+TGG 0.771353 1_1:+43132620 None:intergenic
CTCCATTCAAACGAACACGG+CGG 0.804040 1_1:+43132609 None:intergenic
GGTGGCAGGATAAATGAACG+CGG 0.808001 1_1:+43132638 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAATAAAAAATAAAAA+AGG - chr1_1:43128182-43128201 Msa0022850:three_prime_UTR 0.0%
!! TTAAATTTAAATTATTTAAT+TGG - chr1_1:43131417-43131436 Msa0022850:intron 0.0%
!!! ATTAATTTTATTAATTTTAT+TGG - chr1_1:43131784-43131803 Msa0022850:intron 0.0%
!! AAATAAAAAATAAAAAAGGA+CGG - chr1_1:43128186-43128205 Msa0022850:three_prime_UTR 10.0%
!! AGAATATATTGTTAATATTT+AGG - chr1_1:43129037-43129056 Msa0022850:CDS 10.0%
!!! ATTGGTAAAATTATAATTTT+TGG - chr1_1:43130604-43130623 Msa0022850:intron 10.0%
!! GAAATAAAATGAAAAAAATT+TGG + chr1_1:43130772-43130791 None:intergenic 10.0%
!! AATAAAAAATAAAAAAGGAC+GGG - chr1_1:43128187-43128206 Msa0022850:three_prime_UTR 15.0%
!! ATGAATAAATAATAATGGTT+AGG - chr1_1:43128231-43128250 Msa0022850:exon 15.0%
!! TGAATAAATAATAATGGTTA+GGG - chr1_1:43128232-43128251 Msa0022850:exon 15.0%
!!! TTAATATTTAGGCTTTATTT+GGG - chr1_1:43129048-43129067 Msa0022850:CDS 15.0%
!!! ATGAATACTTTTGTTTTTTA+CGG - chr1_1:43129094-43129113 Msa0022850:intron 15.0%
!! AAACATAGTTTGAAAAAAAA+GGG + chr1_1:43129257-43129276 None:intergenic 15.0%
!! TATTTCAATTGTTAAATGAA+AGG + chr1_1:43130037-43130056 None:intergenic 15.0%
!! TGAAGCAAAAATTAATAAAA+TGG - chr1_1:43130090-43130109 Msa0022850:CDS 15.0%
!!! ATTTAATTTAAATATGTGTG+TGG + chr1_1:43131403-43131422 None:intergenic 15.0%
!! ATTGGTAAAATTATAATTTC+TGG - chr1_1:43131825-43131844 Msa0022850:intron 15.0%
!!! TATTATTTTTAACTTGCAAT+TGG - chr1_1:43132155-43132174 Msa0022850:intron 15.0%
!!! TTTTAAGTTTTGAACCTAAA+AGG - chr1_1:43127965-43127984 Msa0022850:three_prime_UTR 20.0%
!!! AGTATAATAACAAACCTTTT+AGG + chr1_1:43127982-43128001 None:intergenic 20.0%
!! TGTTATTATACTTGTAACAT+AGG - chr1_1:43127990-43128009 Msa0022850:three_prime_UTR 20.0%
!! ATAAAAAATAAAAAAGGACG+GGG - chr1_1:43128188-43128207 Msa0022850:three_prime_UTR 20.0%
!! ATCTAAGTTATACATGATTT+AGG - chr1_1:43128343-43128362 Msa0022850:CDS 20.0%
!! AGTATGAAATGTTAACTTTA+TGG - chr1_1:43128931-43128950 Msa0022850:intron 20.0%
!!! GTTAATATTTAGGCTTTATT+TGG - chr1_1:43129047-43129066 Msa0022850:CDS 20.0%
!!! TAATATTTAGGCTTTATTTG+GGG - chr1_1:43129049-43129068 Msa0022850:CDS 20.0%
!!! TGAATACTTTTGTTTTTTAC+GGG - chr1_1:43129095-43129114 Msa0022850:intron 20.0%
!! CAAACATAGTTTGAAAAAAA+AGG + chr1_1:43129258-43129277 None:intergenic 20.0%
!!! TTTGTAACATTTTTTAGCTA+TGG + chr1_1:43129284-43129303 None:intergenic 20.0%
!! TAATTCATTTCCAAGTTTAA+TGG + chr1_1:43129475-43129494 None:intergenic 20.0%
!! ATTAAACTTGGAAATGAATT+AGG - chr1_1:43129474-43129493 Msa0022850:intron 20.0%
!!! GTTTTTTTATCTGTTTTTTG+TGG - chr1_1:43129529-43129548 Msa0022850:intron 20.0%
!!! TTACAATGATAATGTGTATT+TGG + chr1_1:43130274-43130293 None:intergenic 20.0%
!!! TTATTATTTTTAGCTTGCAA+TGG - chr1_1:43130440-43130459 Msa0022850:intron 20.0%
!!! TATTATTTTTAGCTTGCAAT+GGG - chr1_1:43130441-43130460 Msa0022850:intron 20.0%
!! TCTATTGTAAGAAAAATATG+CGG + chr1_1:43130569-43130588 None:intergenic 20.0%
!!! AAAAATGGGTAATGTTTTTT+CGG - chr1_1:43130649-43130668 Msa0022850:intron 20.0%
!! ATTCAATTGATGAAATGAAA+AGG + chr1_1:43130930-43130949 None:intergenic 20.0%
!! AGAAGTTTGAACAAATAAAT+CGG + chr1_1:43131373-43131392 None:intergenic 20.0%
!! AACATGATTAACCATTATAA+TGG - chr1_1:43131551-43131570 Msa0022850:five_prime_UTR 20.0%
!! TTATATGTAAGGAAAATATG+AGG + chr1_1:43131668-43131687 None:intergenic 20.0%
!! TCATTCAATCATTATATGTA+AGG + chr1_1:43131679-43131698 None:intergenic 20.0%
!!! GTAAAAAGAAGCATATATTT+TGG - chr1_1:43132696-43132715 Msa0022850:five_prime_UTR 20.0%
! AACAGATCTGAACAATAAAA+AGG + chr1_1:43127602-43127621 None:intergenic 25.0%
!!! TCACAGTTTTTAAGTCAAAA+AGG + chr1_1:43128295-43128314 None:intergenic 25.0%
!! TTAATACTATGTTTTGCCAT+TGG - chr1_1:43128510-43128529 Msa0022850:intron 25.0%
! GAAAATGAACTCAAAGTTAA+GGG + chr1_1:43128595-43128614 None:intergenic 25.0%
! AGAAAATGAACTCAAAGTTA+AGG + chr1_1:43128596-43128615 None:intergenic 25.0%
!! ATTTTCCTAAGAGTTTAAGA+AGG - chr1_1:43128629-43128648 Msa0022850:intron 25.0%
!! GAAAATATGAAGAGTATAAG+AGG + chr1_1:43128870-43128889 None:intergenic 25.0%
! AAATGTTAACTTTATGGACA+TGG - chr1_1:43128937-43128956 Msa0022850:intron 25.0%
! TTCTTACATGTAGTAGTATT+TGG + chr1_1:43129021-43129040 None:intergenic 25.0%
!!! GAATACTTTTGTTTTTTACG+GGG - chr1_1:43129096-43129115 Msa0022850:intron 25.0%
!!! TTTTTTCTTCCCACATTTTA+AGG - chr1_1:43129177-43129196 Msa0022850:intron 25.0%
! AGAAGACAAAAAGTAAGATA+AGG - chr1_1:43129374-43129393 Msa0022850:intron 25.0%
! AAGATAAGGTTATAAAGTTC+AGG - chr1_1:43129388-43129407 Msa0022850:intron 25.0%
!! CAAAACTCAAAGTATTAACA+AGG + chr1_1:43129718-43129737 None:intergenic 25.0%
!! AGAATTTGAGTTAAAGTCAA+AGG + chr1_1:43129807-43129826 None:intergenic 25.0%
!! AAGTTTTCAAAAGATGGTTA+TGG - chr1_1:43129904-43129923 Msa0022850:intron 25.0%
!! ATAAGATATTAGCTTCAACA+AGG + chr1_1:43130133-43130152 None:intergenic 25.0%
! TTGTTGAAGCTAATATCTTA+TGG - chr1_1:43130132-43130151 Msa0022850:intron 25.0%
! TACTAGGAGAGTTTATTATA+AGG + chr1_1:43130507-43130526 None:intergenic 25.0%
!!! TAATTTTTGGAGACATCTTA+TGG - chr1_1:43130617-43130636 Msa0022850:intron 25.0%
!!! TTATGGATTAGACAGAAAAA+TGG - chr1_1:43130634-43130653 Msa0022850:intron 25.0%
!!! TATGGATTAGACAGAAAAAT+GGG - chr1_1:43130635-43130654 Msa0022850:intron 25.0%
!! AAAAATTTGGATACCCATTT+TGG + chr1_1:43130759-43130778 None:intergenic 25.0%
! TATTCATCGTTATCAAAAGA+AGG + chr1_1:43130813-43130832 None:intergenic 25.0%
! AGAAAATAAACTCAAAGTGA+AGG + chr1_1:43131123-43131142 None:intergenic 25.0%
!!! AAGTTTTCAAATGTTGGTTA+TGG - chr1_1:43131496-43131515 Msa0022850:exon 25.0%
!! TACTATGAGAGTTTTCTATA+AGG + chr1_1:43131606-43131625 None:intergenic 25.0%
!! ACAGTGATAATGTGTATTAT+GGG + chr1_1:43132025-43132044 None:intergenic 25.0%
!! TACAGTGATAATGTGTATTA+TGG + chr1_1:43132026-43132045 None:intergenic 25.0%
! CAATTGTAGAGTATGAAAAA+TGG - chr1_1:43132627-43132646 Msa0022850:five_prime_UTR 25.0%
AGAGATGAGTTCAAAATTAG+TGG + chr1_1:43127560-43127579 None:intergenic 30.0%
GATCTGAACAATAAAAAGGT+TGG + chr1_1:43127598-43127617 None:intergenic 30.0%
TAATATCACGATCTGATAGA+GGG + chr1_1:43127732-43127751 None:intergenic 30.0%
!!! ATCTTTTTTCATCTATGCTC+CGG + chr1_1:43127834-43127853 None:intergenic 30.0%
!! ACTGTTTTAGATCTAAGCTT+TGG + chr1_1:43127863-43127882 None:intergenic 30.0%
GATTATGCATGTACTTTCAT+TGG - chr1_1:43127926-43127945 Msa0022850:three_prime_UTR 30.0%
!!! ATCTCATTTTGAAGCTGTAT+GGG + chr1_1:43128154-43128173 None:intergenic 30.0%
!!! AATCTCATTTTGAAGCTGTA+TGG + chr1_1:43128155-43128174 None:intergenic 30.0%
GAAAATCTAAGAACACGATA+GGG + chr1_1:43128565-43128584 None:intergenic 30.0%
ATCAACCTTCTTAAACTCTT+AGG + chr1_1:43128637-43128656 None:intergenic 30.0%
!! AAGGTTGATTTCTTTTGAAC+AGG - chr1_1:43128648-43128667 Msa0022850:intron 30.0%
! ATTTCTTTTGAACAGGTGTT+TGG - chr1_1:43128655-43128674 Msa0022850:intron 30.0%
! TTTCTTTTGAACAGGTGTTT+GGG - chr1_1:43128656-43128675 Msa0022850:intron 30.0%
TTAACTTTATGGACATGGTA+AGG - chr1_1:43128942-43128961 Msa0022850:intron 30.0%
TAACTTTATGGACATGGTAA+GGG - chr1_1:43128943-43128962 Msa0022850:intron 30.0%
TTACATGTAGTAGTATTTGG+TGG + chr1_1:43129018-43129037 None:intergenic 30.0%
AAATACAGCTATAGCAGAAA+AGG + chr1_1:43129203-43129222 None:intergenic 30.0%
AGACGATTTACAAATAGTCT+TGG + chr1_1:43129313-43129332 None:intergenic 30.0%
! ATCGTCTTTTGTGAAACTTT+TGG - chr1_1:43129326-43129345 Msa0022850:intron 30.0%
! GTTTAATGGCATCATTTTGA+TGG + chr1_1:43129461-43129480 None:intergenic 30.0%
CAAAATGATGCCATTAAACT+TGG - chr1_1:43129462-43129481 Msa0022850:intron 30.0%
!!! TTATCTGTTTTTTGTGGAAG+AGG - chr1_1:43129535-43129554 Msa0022850:intron 30.0%
TTCAGAAGCAATGTTGTAAA+GGG + chr1_1:43129770-43129789 None:intergenic 30.0%
ATTCAGAAGCAATGTTGTAA+AGG + chr1_1:43129771-43129790 None:intergenic 30.0%
TTTGTTACACAAGGTTTCAT+GGG + chr1_1:43129850-43129869 None:intergenic 30.0%
!! CCATCTTTTGAAAACTTTTG+TGG + chr1_1:43129901-43129920 None:intergenic 30.0%
! CCACAAAAGTTTTCAAAAGA+TGG - chr1_1:43129898-43129917 Msa0022850:intron 30.0%
TTTAATCTACACAAATCTGC+AGG - chr1_1:43130168-43130187 Msa0022850:intron 30.0%
AATGAGAAAGAACACAAAAG+TGG + chr1_1:43130372-43130391 None:intergenic 30.0%
TCTTACAATAGACACATGTT+TGG - chr1_1:43130577-43130596 Msa0022850:intron 30.0%
! TAACGATGAATACCTTTTTC+CGG - chr1_1:43130821-43130840 Msa0022850:intron 30.0%
CAGTTATGAAAAAGGAATAC+CGG + chr1_1:43130843-43130862 None:intergenic 30.0%
CACAAATTCCACATAATCAA+GGG + chr1_1:43130987-43131006 None:intergenic 30.0%
TAAAAGCAATACAAAGCCAA+AGG + chr1_1:43131087-43131106 None:intergenic 30.0%
AGTGTTGTAAAGGGAAAATT+TGG + chr1_1:43131305-43131324 None:intergenic 30.0%
TTTGGAAGTAGTGTTGTAAA+GGG + chr1_1:43131314-43131333 None:intergenic 30.0%
ATTTGGAAGTAGTGTTGTAA+AGG + chr1_1:43131315-43131334 None:intergenic 30.0%
TACAACACTACTTCCAAATT+TGG - chr1_1:43131316-43131335 Msa0022850:intron 30.0%
AAGGAAACAACAACCAAATT+TGG + chr1_1:43131332-43131351 None:intergenic 30.0%
!! TAAATCGGATTTTGAGTCAT+AGG + chr1_1:43131358-43131377 None:intergenic 30.0%
GAAAACTTATGAGCATATGT+TGG + chr1_1:43131484-43131503 None:intergenic 30.0%
! GCTCATAAGTTTTCAAATGT+TGG - chr1_1:43131490-43131509 Msa0022850:exon 30.0%
AGGTATGGCAAAAGAAAAAT+TGG + chr1_1:43131586-43131605 None:intergenic 30.0%
! TGAGAGTTTTCTATAAGGTA+TGG + chr1_1:43131601-43131620 None:intergenic 30.0%
GAAAATATGAGGAATCCAAA+AGG + chr1_1:43131657-43131676 None:intergenic 30.0%
AGACACATGTTTAGTAACAT+TGG - chr1_1:43131807-43131826 Msa0022850:intron 30.0%
!! TTGATTGTTTTGTGCAGAAT+AGG - chr1_1:43132181-43132200 Msa0022850:intron 30.0%
!! TGATTGTTTTGTGCAGAATA+GGG - chr1_1:43132182-43132201 Msa0022850:intron 30.0%
! TAGTACAAAACAGAGGTATA+TGG + chr1_1:43132264-43132283 None:intergenic 30.0%
ACATTCTTAGTACAAAACAG+AGG + chr1_1:43132271-43132290 None:intergenic 30.0%
ACTCTGCATAAGACAATAAT+GGG - chr1_1:43132306-43132325 Msa0022850:intron 30.0%
TTGCCTTTAAATACTACATG+AGG - chr1_1:43132749-43132768 Msa0022850:five_prime_UTR 30.0%
TGCCTTTAAATACTACATGA+GGG - chr1_1:43132750-43132769 Msa0022850:five_prime_UTR 30.0%
TTCCCTCATGTAGTATTTAA+AGG + chr1_1:43132755-43132774 None:intergenic 30.0%
GTTCAAAATTAGTGGTGGTA+TGG + chr1_1:43127552-43127571 None:intergenic 35.0%
GATGAGTTCAAAATTAGTGG+TGG + chr1_1:43127557-43127576 None:intergenic 35.0%
CTAATATCACGATCTGATAG+AGG + chr1_1:43127733-43127752 None:intergenic 35.0%
TTCATTTCTGTGTGTGGTTA+AGG + chr1_1:43127797-43127816 None:intergenic 35.0%
! AGCTTAGATCTAAAACAGTG+AGG - chr1_1:43127864-43127883 Msa0022850:three_prime_UTR 35.0%
! GCTTAGATCTAAAACAGTGA+GGG - chr1_1:43127865-43127884 Msa0022850:three_prime_UTR 35.0%
! CATTAGGTTCAATCGATTCA+AGG + chr1_1:43128046-43128065 None:intergenic 35.0%
GAATCGATTGAACCTAATGT+CGG - chr1_1:43128047-43128066 Msa0022850:three_prime_UTR 35.0%
AATCGATTGAACCTAATGTC+GGG - chr1_1:43128048-43128067 Msa0022850:three_prime_UTR 35.0%
!! TAGAGTCTGAGATTGAGTTT+TGG - chr1_1:43128094-43128113 Msa0022850:three_prime_UTR 35.0%
!!! AGTTTTGGAACGTCTTGTTT+TGG - chr1_1:43128109-43128128 Msa0022850:three_prime_UTR 35.0%
!! TTGGTAATACACTCCTCTTT+TGG - chr1_1:43128128-43128147 Msa0022850:three_prime_UTR 35.0%
AAATAAAAAAGGACGGGGAA+TGG - chr1_1:43128193-43128212 Msa0022850:three_prime_UTR 35.0%
AATAAAAAAGGACGGGGAAT+GGG - chr1_1:43128194-43128213 Msa0022850:three_prime_UTR 35.0%
GGAAAATCTAAGAACACGAT+AGG + chr1_1:43128566-43128585 None:intergenic 35.0%
ACTCAAAGTTAAGGGAAAGT+GGG + chr1_1:43128587-43128606 None:intergenic 35.0%
AACTCAAAGTTAAGGGAAAG+TGG + chr1_1:43128588-43128607 None:intergenic 35.0%
! TTCTTTTGAACAGGTGTTTG+GGG - chr1_1:43128657-43128676 Msa0022850:intron 35.0%
AAATTCAGGAAACCCATTCA+TGG - chr1_1:43128780-43128799 Msa0022850:intron 35.0%
CATTTCATACTGTTCGTTTC+AGG + chr1_1:43128922-43128941 None:intergenic 35.0%
GGATATGCAAGTGAATAAGA+TGG - chr1_1:43128978-43128997 Msa0022850:intron 35.0%
!! ATTTAGGCTTTATTTGGGGA+AGG - chr1_1:43129053-43129072 Msa0022850:CDS 35.0%
!!! ACTTTTGTTTTTTACGGGGA+AGG - chr1_1:43129100-43129119 Msa0022850:intron 35.0%
CTTTATATTCCTGACCTACA+CGG - chr1_1:43129144-43129163 Msa0022850:intron 35.0%
CAGAAAAGGCCTTAAAATGT+GGG + chr1_1:43129189-43129208 None:intergenic 35.0%
AATTCGTTGCAAACTTCAGT+TGG - chr1_1:43129600-43129619 Msa0022850:intron 35.0%
ATTCGTTGCAAACTTCAGTT+GGG - chr1_1:43129601-43129620 Msa0022850:intron 35.0%
TACAACATTGCTTCTGAATC+TGG - chr1_1:43129772-43129791 Msa0022850:intron 35.0%
! GTTTGTTACACAAGGTTTCA+TGG + chr1_1:43129851-43129870 None:intergenic 35.0%
! AAGTGAGTGTTTGTTACACA+AGG + chr1_1:43129859-43129878 None:intergenic 35.0%
GACTAAGAGAGTCGATTAAA+AGG + chr1_1:43129964-43129983 None:intergenic 35.0%
CTTCATCTCATAGTTTCTCA+AGG + chr1_1:43130199-43130218 None:intergenic 35.0%
CTTGAGAAACTATGAGATGA+AGG - chr1_1:43130197-43130216 Msa0022850:intron 35.0%
AGAAAGAACACAAAAGTGGA+AGG + chr1_1:43130368-43130387 None:intergenic 35.0%
!!! TTTTAGCTTGCAATGGGTTA+TGG - chr1_1:43130447-43130466 Msa0022850:intron 35.0%
! TTCACGTTCACACTTTTACT+AGG + chr1_1:43130523-43130542 None:intergenic 35.0%
! AGACACATGTTTGGTAACAT+TGG - chr1_1:43130586-43130605 Msa0022850:intron 35.0%
!!! ATTTTGGTTCGATTCTTGCA+TGG + chr1_1:43130743-43130762 None:intergenic 35.0%
ATGCAAGAATCGAACCAAAA+TGG - chr1_1:43130742-43130761 Msa0022850:intron 35.0%
TGCAAGAATCGAACCAAAAT+GGG - chr1_1:43130743-43130762 Msa0022850:intron 35.0%
GAAAAAGGAATACCGGAAAA+AGG + chr1_1:43130836-43130855 None:intergenic 35.0%
CTATGCAGCAGTTATGAAAA+AGG + chr1_1:43130851-43130870 None:intergenic 35.0%
CTTAATCATTATGATGCCCT+TGG + chr1_1:43130895-43130914 None:intergenic 35.0%
ACGTTATTCCCTTGATTATG+TGG - chr1_1:43130976-43130995 Msa0022850:intron 35.0%
CCACAAATTCCACATAATCA+AGG + chr1_1:43130988-43131007 None:intergenic 35.0%
CCTTGATTATGTGGAATTTG+TGG - chr1_1:43130985-43131004 Msa0022850:intron 35.0%
! TTTCTTTTGATCAGGTGGTT+AGG - chr1_1:43131187-43131206 Msa0022850:intron 35.0%
!! GATTTTGAGTCATAGGTCAA+AGG + chr1_1:43131351-43131370 None:intergenic 35.0%
! GAATTCCATTGTATGCCTTT+TGG - chr1_1:43131639-43131658 Msa0022850:intron 35.0%
! TAATTTCTGGAGACGTCTTA+TGG - chr1_1:43131838-43131857 Msa0022850:intron 35.0%
TTTGCGGAATTGTTTGATGA+AGG - chr1_1:43131944-43131963 Msa0022850:intron 35.0%
GACTCTGCATAAGACAATAA+TGG - chr1_1:43132305-43132324 Msa0022850:intron 35.0%
! GTTCCTCCTTCAAGAATTTT+GGG - chr1_1:43132452-43132471 Msa0022850:five_prime_UTR 35.0%
TTGTCTCCCAAAATTCTTGA+AGG + chr1_1:43132461-43132480 None:intergenic 35.0%
!! AATTTTGGGAGACAAAGAAG+AGG - chr1_1:43132466-43132485 Msa0022850:five_prime_UTR 35.0%
CAACTAAGAGCTTATCTCAT+TGG + chr1_1:43132578-43132597 None:intergenic 35.0%
!!! TTTTGGCTTGCAAAATGTGA+TGG - chr1_1:43132713-43132732 Msa0022850:five_prime_UTR 35.0%
AGATATGTAGAGAGAGAGAG+AGG + chr1_1:43127481-43127500 None:intergenic 40.0%
!! AAAGGTTGGCTTTGTAGAGA+AGG + chr1_1:43127584-43127603 None:intergenic 40.0%
! GCAGTTTTCATTTCTGTGTG+TGG + chr1_1:43127803-43127822 None:intergenic 40.0%
! TCAATCGATTCAAGGTGGTT+AGG + chr1_1:43128038-43128057 None:intergenic 40.0%
! TAGGTTCAATCGATTCAAGG+TGG + chr1_1:43128043-43128062 None:intergenic 40.0%
ATAAAAAAGGACGGGGAATG+GGG - chr1_1:43128195-43128214 Msa0022850:three_prime_UTR 40.0%
GTTGAGGATGTTTGCATAGT+TGG - chr1_1:43128695-43128714 Msa0022850:intron 40.0%
AAGTCACAGGTGACAAATTC+AGG - chr1_1:43128766-43128785 Msa0022850:intron 40.0%
TACAGAAGGTCCATCTAGAT+GGG + chr1_1:43128837-43128856 None:intergenic 40.0%
TTACAGAAGGTCCATCTAGA+TGG + chr1_1:43128838-43128857 None:intergenic 40.0%
GAGGAAAGAGAACTTACAGA+AGG + chr1_1:43128851-43128870 None:intergenic 40.0%
GACATGGTAAGGGTTAGAAA+AGG - chr1_1:43128953-43128972 Msa0022850:intron 40.0%
TGGTAAGGGTTAGAAAAGGA+TGG - chr1_1:43128957-43128976 Msa0022850:intron 40.0%
!! GCTTTATTTGGGGAAGGTAA+GGG - chr1_1:43129059-43129078 Msa0022850:CDS 40.0%
GGGAAGGTTGAACTTGATAT+GGG - chr1_1:43129116-43129135 Msa0022850:intron 40.0%
GGAAGGTTGAACTTGATATG+GGG - chr1_1:43129117-43129136 Msa0022850:intron 40.0%
AAAACAAAGAGCTACCGTGT+AGG + chr1_1:43129161-43129180 None:intergenic 40.0%
GCAGAAAAGGCCTTAAAATG+TGG + chr1_1:43129190-43129209 None:intergenic 40.0%
GCCATATCTGACATACAATC+TGG - chr1_1:43129231-43129250 Msa0022850:intron 40.0%
GCCAGATTGTATGTCAGATA+TGG + chr1_1:43129235-43129254 None:intergenic 40.0%
! GAAACTTTTGGCATGTTTGC+AGG - chr1_1:43129338-43129357 Msa0022850:intron 40.0%
!!! TCTGTTTTTTGTGGAAGAGG+TGG - chr1_1:43129538-43129557 Msa0022850:intron 40.0%
! TTTTGTGGAAGAGGTGGAAA+TGG - chr1_1:43129544-43129563 Msa0022850:intron 40.0%
TTCGTTGCAAACTTCAGTTG+GGG - chr1_1:43129602-43129621 Msa0022850:intron 40.0%
! TTGATGCATCGTTTTGCCTT+TGG - chr1_1:43129654-43129673 Msa0022850:intron 40.0%
GAGCAGAAACACAAATCCAA+AGG + chr1_1:43129673-43129692 None:intergenic 40.0%
!! AAGGGATAATTTGCTACCTC+TGG + chr1_1:43129752-43129771 None:intergenic 40.0%
AGAGAGTCGATTAAAAGGCA+TGG + chr1_1:43129959-43129978 None:intergenic 40.0%
GAATTCCATTGCATGCTTCT+AGG - chr1_1:43129997-43130016 Msa0022850:intron 40.0%
GAATTCCATTGTATGCCTCA+TGG - chr1_1:43130540-43130559 Msa0022850:intron 40.0%
AAAAATATGCGGAGTCCATG+AGG + chr1_1:43130558-43130577 None:intergenic 40.0%
! CTGCTGCATAGATCTTTTTG+TGG - chr1_1:43130860-43130879 Msa0022850:intron 40.0%
! TTTTGTGGCAGCTAAATCCA+AGG - chr1_1:43130875-43130894 Msa0022850:intron 40.0%
TTTGTGGCAGCTAAATCCAA+GGG - chr1_1:43130876-43130895 Msa0022850:intron 40.0%
ACATTGTTTGCCTTTGCCTT+TGG - chr1_1:43131068-43131087 Msa0022850:intron 40.0%
CAATACAAAGCCAAAGGCAA+AGG + chr1_1:43131081-43131100 None:intergenic 40.0%
TCTCGCAACAGTATAAGAGA+CGG - chr1_1:43131160-43131179 Msa0022850:intron 40.0%
!! CTCAAGCTTGTTGCATATGT+TGG - chr1_1:43131211-43131230 Msa0022850:intron 40.0%
TGTTAGTGTTGCAAAGTCAG+AGG - chr1_1:43131277-43131296 Msa0022850:intron 40.0%
GGCTTGCAAGTCCATTATAA+TGG + chr1_1:43131565-43131584 None:intergenic 40.0%
! GGAATCCAAAAGGCATACAA+TGG + chr1_1:43131647-43131666 None:intergenic 40.0%
! AAACAATTCCGCAAAGCGTT+TGG + chr1_1:43131939-43131958 None:intergenic 40.0%
ATCACATCTGCAGATTTGTG+TGG + chr1_1:43131972-43131991 None:intergenic 40.0%
ACAAATCTGCAGATGTGATG+AGG - chr1_1:43131973-43131992 Msa0022850:intron 40.0%
! GGTTCCTCCTTCAAGAATTT+TGG - chr1_1:43132451-43132470 Msa0022850:five_prime_UTR 40.0%
TCTCCCAAAATTCTTGAAGG+AGG + chr1_1:43132458-43132477 None:intergenic 40.0%
! AGAGGCATAAAGTTGCATGA+TGG - chr1_1:43132484-43132503 Msa0022850:five_prime_UTR 40.0%
ACAGAGAGTCATAGAGACGT+TGG + chr1_1:43127436-43127455 None:intergenic 45.0%
GTCCTCCATTCAAACGAACA+CGG + chr1_1:43127681-43127700 None:intergenic 45.0%
ACGATCTGATAGAGGGTTGT+CGG + chr1_1:43127725-43127744 None:intergenic 45.0%
TATTAGACGCCTAGAAGCGA+CGG - chr1_1:43127747-43127766 Msa0022850:three_prime_UTR 45.0%
AAGGTCTTAGAAGCTGTCGT+AGG + chr1_1:43127778-43127797 None:intergenic 45.0%
ATGAAAACTGCAGACGACAC+CGG - chr1_1:43127812-43127831 Msa0022850:three_prime_UTR 45.0%
GAACCTAATGTCGGGATTTG+CGG - chr1_1:43128056-43128075 Msa0022850:three_prime_UTR 45.0%
AACCTAATGTCGGGATTTGC+GGG - chr1_1:43128057-43128076 Msa0022850:three_prime_UTR 45.0%
AGAGAAGAACGCAAAGCCAA+TGG + chr1_1:43128529-43128548 None:intergenic 45.0%
! ATAGTTGGTGCTCCAATGCA+GGG - chr1_1:43128710-43128729 Msa0022850:intron 45.0%
! GAGTGTACTTTTCCCTGCAT+TGG + chr1_1:43128725-43128744 None:intergenic 45.0%
TGTTAGTGCTGCAAAGTCAC+AGG - chr1_1:43128753-43128772 Msa0022850:intron 45.0%
AGGAAACCCATTCATGGACT+GGG - chr1_1:43128786-43128805 Msa0022850:intron 45.0%
ACCATTTCTCCCCATCTAGA+TGG - chr1_1:43128824-43128843 Msa0022850:intron 45.0%
TCCATCTAGATGGGGAGAAA+TGG + chr1_1:43128828-43128847 None:intergenic 45.0%
ACAGAAGGTCCATCTAGATG+GGG + chr1_1:43128836-43128855 None:intergenic 45.0%
!! GGCTTTATTTGGGGAAGGTA+AGG - chr1_1:43129058-43129077 Msa0022850:CDS 45.0%
GGGGAAGGTTGAACTTGATA+TGG - chr1_1:43129115-43129134 Msa0022850:intron 45.0%
GGTTGAACTTGATATGGGGA+AGG - chr1_1:43129121-43129140 Msa0022850:intron 45.0%
TGTCTTTGTGGAAGTAGTCC+TGG - chr1_1:43129419-43129438 Msa0022850:intron 45.0%
TCGTTGCAAACTTCAGTTGG+GGG - chr1_1:43129603-43129622 Msa0022850:intron 45.0%
! TTTTGCTAGTGCAAAGCCAG+AGG - chr1_1:43129733-43129752 Msa0022850:intron 45.0%
! CAAGTCCTAGAAGCATGCAA+TGG + chr1_1:43130005-43130024 None:intergenic 45.0%
AGCTGTCAAAGCTACTGATG+AGG - chr1_1:43130220-43130239 Msa0022850:intron 45.0%
!!! ACGGCTGGTTTCTTTTGATC+AGG - chr1_1:43131179-43131198 Msa0022850:intron 45.0%
!! GCTGGTTTCTTTTGATCAGG+TGG - chr1_1:43131182-43131201 Msa0022850:intron 45.0%
TTCTTGTCGACATACCTGCT+TGG - chr1_1:43131906-43131925 Msa0022850:intron 45.0%
GCTTGCAAAATGTGATGGCA+AGG - chr1_1:43132718-43132737 Msa0022850:five_prime_UTR 45.0%
CAAAATGTGATGGCAAGGCA+AGG - chr1_1:43132723-43132742 Msa0022850:five_prime_UTR 45.0%
AGAAAGAGCCTTGGAGAGAA+AGG - chr1_1:43132821-43132840 Msa0022850:five_prime_UTR 45.0%
!! AATAAATGAATAAATAATAA+TGG - chr1_1:43128226-43128245 Msa0022850:exon 5.0%
!!! TAAGATTTTTTTTTAAAAAA+GGG + chr1_1:43129634-43129653 None:intergenic 5.0%
!!! ATAAGATTTTTTTTTAAAAA+AGG + chr1_1:43129635-43129654 None:intergenic 5.0%
!! AATAATAACAATAATAATAT+AGG - chr1_1:43131707-43131726 Msa0022850:intron 5.0%
!! TAATTATAAATATAATTGTT+AGG - chr1_1:43132338-43132357 Msa0022850:intron 5.0%
!! AATTATAAATATAATTGTTA+GGG - chr1_1:43132339-43132358 Msa0022850:intron 5.0%
AATGTTGAGGCGGCTGTGTT+TGG + chr1_1:43127507-43127526 None:intergenic 50.0%
AGTGGTGGTATGGCCTAAGA+AGG + chr1_1:43127542-43127561 None:intergenic 50.0%
GGTGGCAGGATAAATGAACG+CGG + chr1_1:43127649-43127668 None:intergenic 50.0%
GTTCATTTATCCTGCCACCG+TGG - chr1_1:43127650-43127669 Msa0022850:three_prime_UTR 50.0%
ATCCGCCGTGTTCGTTTGAA+TGG - chr1_1:43127673-43127692 Msa0022850:three_prime_UTR 50.0%
CTCCATTCAAACGAACACGG+CGG + chr1_1:43127678-43127697 None:intergenic 50.0%
TAGAGGGTTGTCGGTAGTAG+TGG + chr1_1:43127716-43127735 None:intergenic 50.0%
TTCCCGCAAATCCCGACATT+AGG + chr1_1:43128062-43128081 None:intergenic 50.0%
GAAGCTGTATGGGCCAAAAG+AGG + chr1_1:43128144-43128163 None:intergenic 50.0%
CAAACATCCTCAACCAGCGT+GGG + chr1_1:43128689-43128708 None:intergenic 50.0%
! CATAGTTGGTGCTCCAATGC+AGG - chr1_1:43128709-43128728 Msa0022850:intron 50.0%
CAGGAAACCCATTCATGGAC+TGG - chr1_1:43128785-43128804 Msa0022850:intron 50.0%
! GGAAACCCATTCATGGACTG+GGG - chr1_1:43128787-43128806 Msa0022850:intron 50.0%
TCATGCCCCAGTCCATGAAT+GGG + chr1_1:43128795-43128814 None:intergenic 50.0%
ATCATGCCCCAGTCCATGAA+TGG + chr1_1:43128796-43128815 None:intergenic 50.0%
AAAGAGCTACCGTGTAGGTC+AGG + chr1_1:43129156-43129175 None:intergenic 50.0%
TTTGTGGAAGTAGTCCTGGC+AGG - chr1_1:43129423-43129442 Msa0022850:intron 50.0%
GGAGTCCATGAGGCATACAA+TGG + chr1_1:43130548-43130567 None:intergenic 50.0%
GCAACAGTATAAGAGACGGC+TGG - chr1_1:43131164-43131183 Msa0022850:intron 50.0%
GCTGCTATCCAAACGCTTTG+CGG - chr1_1:43131928-43131947 Msa0022850:intron 50.0%
GCCTTCATACTGCTTTCTGC+TGG - chr1_1:43132425-43132444 Msa0022850:intron 50.0%
GCCAGCAGAAAGCAGTATGA+AGG + chr1_1:43132429-43132448 None:intergenic 50.0%
CGAAAGAGCCTTGGAGAGAA+AGG - chr1_1:43132776-43132795 Msa0022850:five_prime_UTR 50.0%
AGAGCCTTGGAGAGAAAGGA+AGG - chr1_1:43132780-43132799 Msa0022850:five_prime_UTR 50.0%
GAGCCTTGGAGAGAAAGGAA+GGG - chr1_1:43132781-43132800 Msa0022850:five_prime_UTR 50.0%
AAGCCCTTCCTTTCTCTCCA+AGG + chr1_1:43132787-43132806 None:intergenic 50.0%
TTGGAGAGAAAGGAAGGGCT+TGG - chr1_1:43132786-43132805 Msa0022850:five_prime_UTR 50.0%
GTGAGAGAGAGAAAGAGCCT+TGG - chr1_1:43132812-43132831 Msa0022850:five_prime_UTR 50.0%
AGAATTTGCAGTGCAGCGCA+GGG + chr1_1:43132847-43132866 None:intergenic 50.0%
GTATGGCCTAAGAAGGCTGC+CGG + chr1_1:43127535-43127554 None:intergenic 55.0%
AAACGAACACGGCGGATCCA+CGG + chr1_1:43127670-43127689 None:intergenic 55.0%
CGCCGTGTTCGTTTGAATGG+AGG - chr1_1:43127676-43127695 Msa0022850:three_prime_UTR 55.0%
TAGGTACCACCGTCGCTTCT+AGG + chr1_1:43127759-43127778 None:intergenic 55.0%
! TTTGGGGTTAGAACCCACGC+TGG - chr1_1:43128673-43128692 Msa0022850:intron 55.0%
! GTTAGAACCCACGCTGGTTG+AGG - chr1_1:43128679-43128698 Msa0022850:intron 55.0%
GCAAACATCCTCAACCAGCG+TGG + chr1_1:43128690-43128709 None:intergenic 55.0%
! CAGGAGAGCACGTGTCTTTG+TGG - chr1_1:43129407-43129426 Msa0022850:intron 55.0%
TGGAAGTAGTCCTGGCAGGA+AGG - chr1_1:43129427-43129446 Msa0022850:intron 55.0%
CGTTTGGATAGCAGCCAAGC+AGG + chr1_1:43131923-43131942 None:intergenic 55.0%
CATACTGCTTTCTGCTGGCG+TGG - chr1_1:43132430-43132449 Msa0022850:five_prime_UTR 55.0%
TGAGGGAAGCGAAAGAGCCT+TGG - chr1_1:43132767-43132786 Msa0022850:five_prime_UTR 55.0%
CAGAATTTGCAGTGCAGCGC+AGG + chr1_1:43132848-43132867 None:intergenic 55.0%
GTTGAGGCGGCTGTGTTTGG+TGG + chr1_1:43127504-43127523 None:intergenic 60.0%
GCCGCCTCAACATTGCCATC+CGG - chr1_1:43127513-43127532 Msa0022850:three_prime_UTR 60.0%
GCCGGATGGCAATGTTGAGG+CGG + chr1_1:43127517-43127536 None:intergenic 60.0%
GCTGCCGGATGGCAATGTTG+AGG + chr1_1:43127520-43127539 None:intergenic 60.0%
TGCCATCCGGCAGCCTTCTT+AGG - chr1_1:43127526-43127545 Msa0022850:three_prime_UTR 60.0%
TAGACGCCTAGAAGCGACGG+TGG - chr1_1:43127750-43127769 Msa0022850:three_prime_UTR 60.0%
GGCTACTCTTCCTTCCTGCC+AGG + chr1_1:43129440-43129459 None:intergenic 60.0%
GGCCTAAGAAGGCTGCCGGA+TGG + chr1_1:43127531-43127550 None:intergenic 65.0%
GCGCAGGGCCTTTCTCTCCA+AGG + chr1_1:43132832-43132851 None:intergenic 65.0%
CGAACACGGCGGATCCACGG+TGG + chr1_1:43127667-43127686 None:intergenic 70.0%
CACGGCGGATCCACGGTGGC+AGG + chr1_1:43127663-43127682 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 43127427 43132879 43127427 ID=Msa0022850;Name=Msa0022850
chr1_1 mRNA 43127427 43132879 43127427 ID=Msa0022850-mRNA-1;Parent=Msa0022850;Name=Msa0022850-mRNA-1;_AED=0.10;_eAED=0.10;_QI=583|0.6|0.83|1|0|0|6|786|134
chr1_1 exon 43127427 43127596 43127427 ID=Msa0022850-mRNA-1:exon:12560;Parent=Msa0022850-mRNA-1
chr1_1 exon 43127618 43128406 43127618 ID=Msa0022850-mRNA-1:exon:12559;Parent=Msa0022850-mRNA-1
chr1_1 exon 43129029 43129105 43129029 ID=Msa0022850-mRNA-1:exon:12558;Parent=Msa0022850-mRNA-1
chr1_1 exon 43130017 43130116 43130017 ID=Msa0022850-mRNA-1:exon:12557;Parent=Msa0022850-mRNA-1
chr1_1 exon 43131453 43131636 43131453 ID=Msa0022850-mRNA-1:exon:12556;Parent=Msa0022850-mRNA-1
chr1_1 exon 43132426 43132879 43132426 ID=Msa0022850-mRNA-1:exon:12555;Parent=Msa0022850-mRNA-1
chr1_1 five_prime_UTR 43132426 43132879 43132426 ID=Msa0022850-mRNA-1:five_prime_utr;Parent=Msa0022850-mRNA-1
chr1_1 five_prime_UTR 43131508 43131636 43131508 ID=Msa0022850-mRNA-1:five_prime_utr;Parent=Msa0022850-mRNA-1
chr1_1 CDS 43131453 43131507 43131453 ID=Msa0022850-mRNA-1:cds;Parent=Msa0022850-mRNA-1
chr1_1 CDS 43130017 43130116 43130017 ID=Msa0022850-mRNA-1:cds;Parent=Msa0022850-mRNA-1
chr1_1 CDS 43129029 43129105 43129029 ID=Msa0022850-mRNA-1:cds;Parent=Msa0022850-mRNA-1
chr1_1 CDS 43128234 43128406 43128234 ID=Msa0022850-mRNA-1:cds;Parent=Msa0022850-mRNA-1
chr1_1 three_prime_UTR 43127618 43128233 43127618 ID=Msa0022850-mRNA-1:three_prime_utr;Parent=Msa0022850-mRNA-1
chr1_1 three_prime_UTR 43127427 43127596 43127427 ID=Msa0022850-mRNA-1:three_prime_utr;Parent=Msa0022850-mRNA-1
Gene Sequence

>Msa0022850

ATGGACTGGGGCATGATAAGAGACAACCATTTCTCCCCATCTAGATGGACCTTCTGTGACACCTTGAGAAACTATGAGATGAAGGAGCTGTCAAAGCTACTGATGAGGACTTGTTTACATGCTTGCTTGCTGCTGTCCAAATACACATTATCATTGTGGTTAGGACTCAAGCTTGTTGCATATGTTGGTATAGTTGATGCTTCAAATGAAGAAAAGCACAATTTTGAGCTTTATCATATTCTTGTCGACATACCTGCTTGGCTGCTATCCAAACGCTTTGCGGAATTGTTTGATGAAGGATCCACACAAATCTGCAGATGTGATGAGGACTTGTTACATGCTTGTTTGCTGCTGCCCATAATACACATTATCACTGTAAGTAAAAAAATGAAAACAATTGTGTAG
Protein sequence

>Msa0022850

MDWGMIRDNHFSPSRWTFCDTLRNYEMKELSKLLMRTCLHACLLLSKYTLSLWLGLKLVAYVGIVDASNEEKHNFELYHILVDIPAWLLSKRFAELFDEGSTQICRCDEDLLHACLLLPIIHIITVSKKMKTIV*