Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024030 | XP_013467854.1 | 98.122 | 213 | 4 | 0 | 1 | 213 | 1 | 213 | 1.15e-149 | 424 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024030 | sp|Q8GW29|LOG7_ARATH | 83.645 | 214 | 33 | 1 | 1 | 212 | 1 | 214 | 5.16e-130 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024030 | Msa0163160 | 0.812114 | 4.988488e-51 | -8.615850e-47 |
| Msa0024030 | Msa0216340 | 0.810040 | 1.404735e-50 | -8.615850e-47 |
| Msa0024030 | Msa0334320 | 0.804085 | 2.558386e-49 | -8.615850e-47 |
| Msa0024030 | Msa0967780 | 0.805012 | 1.639361e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024030 | MtrunA17_Chr1g0177391 | 98.122 | 213 | 4 | 0 | 1 | 213 | 1 | 213 | 1.06e-153 | 424 |
| Msa0024030 | MtrunA17_Chr2g0326841 | 75.385 | 195 | 48 | 0 | 6 | 200 | 10 | 204 | 1.73e-113 | 322 |
| Msa0024030 | MtrunA17_Chr7g0264181 | 72.727 | 209 | 55 | 1 | 6 | 212 | 11 | 219 | 4.79e-113 | 322 |
| Msa0024030 | MtrunA17_Chr1g0181131 | 71.770 | 209 | 57 | 1 | 6 | 212 | 10 | 218 | 3.96e-112 | 319 |
| Msa0024030 | MtrunA17_Chr3g0142491 | 76.020 | 196 | 47 | 0 | 5 | 200 | 11 | 206 | 4.73e-111 | 317 |
| Msa0024030 | MtrunA17_Chr4g0028871 | 75.648 | 193 | 47 | 0 | 8 | 200 | 12 | 204 | 2.70e-110 | 314 |
| Msa0024030 | MtrunA17_Chr1g0151201 | 62.326 | 215 | 78 | 2 | 1 | 212 | 1 | 215 | 4.21e-97 | 281 |
| Msa0024030 | MtrunA17_Chr1g0156401 | 65.179 | 112 | 18 | 1 | 36 | 126 | 1 | 112 | 3.62e-44 | 143 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024030 | AT5G06300.1 | 83.645 | 214 | 33 | 1 | 1 | 212 | 1 | 214 | 5.25e-131 | 367 |
| Msa0024030 | AT2G35990.1 | 75.980 | 204 | 49 | 0 | 1 | 204 | 1 | 204 | 1.93e-118 | 335 |
| Msa0024030 | AT2G37210.1 | 75.122 | 205 | 50 | 1 | 5 | 208 | 10 | 214 | 1.99e-115 | 328 |
| Msa0024030 | AT3G53450.1 | 75.122 | 205 | 50 | 1 | 5 | 208 | 10 | 214 | 1.67e-114 | 325 |
| Msa0024030 | AT2G28305.1 | 71.090 | 211 | 60 | 1 | 3 | 212 | 2 | 212 | 9.47e-113 | 321 |
| Msa0024030 | AT2G37210.2 | 66.812 | 229 | 51 | 2 | 5 | 208 | 10 | 238 | 2.22e-109 | 313 |
| Msa0024030 | AT2G28305.3 | 77.473 | 182 | 41 | 0 | 3 | 184 | 2 | 183 | 6.16e-107 | 306 |
| Msa0024030 | AT5G03270.1 | 72.487 | 189 | 52 | 0 | 2 | 190 | 12 | 200 | 4.51e-103 | 296 |
| Msa0024030 | AT4G35190.1 | 69.000 | 200 | 62 | 0 | 1 | 200 | 1 | 200 | 1.02e-101 | 294 |
| Msa0024030 | AT5G03270.2 | 73.224 | 183 | 49 | 0 | 2 | 184 | 12 | 194 | 3.82e-100 | 288 |
| Msa0024030 | AT4G35190.2 | 72.283 | 184 | 51 | 0 | 1 | 184 | 1 | 184 | 3.49e-98 | 284 |
| Msa0024030 | AT5G11950.1 | 59.524 | 210 | 84 | 1 | 2 | 210 | 3 | 212 | 2.76e-92 | 269 |
| Msa0024030 | AT5G11950.2 | 59.524 | 210 | 84 | 1 | 2 | 210 | 3 | 212 | 2.76e-92 | 269 |
| Msa0024030 | AT5G11950.3 | 59.524 | 210 | 84 | 1 | 2 | 210 | 3 | 212 | 2.76e-92 | 269 |
| Msa0024030 | AT2G35990.3 | 75.658 | 152 | 37 | 0 | 53 | 204 | 1 | 152 | 1.04e-84 | 248 |
| Msa0024030 | AT2G35990.2 | 75.658 | 152 | 37 | 0 | 53 | 204 | 1 | 152 | 1.04e-84 | 248 |
| Msa0024030 | AT2G28305.2 | 76.087 | 138 | 33 | 0 | 3 | 140 | 2 | 139 | 1.42e-78 | 233 |
| Msa0024030 | AT5G11950.4 | 60.377 | 159 | 62 | 1 | 53 | 210 | 1 | 159 | 3.34e-66 | 201 |
| Msa0024030 | AT5G26140.2 | 49.650 | 143 | 50 | 1 | 80 | 200 | 6 | 148 | 1.02e-39 | 134 |
| Msa0024030 | AT5G26140.1 | 48.062 | 129 | 45 | 1 | 94 | 200 | 1 | 129 | 1.41e-32 | 115 |
| Msa0024030 | AT5G26140.3 | 51.020 | 98 | 48 | 0 | 103 | 200 | 17 | 114 | 4.15e-28 | 103 |
Find 79 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGGATTGATTTGGTTTA+TGG | 0.101186 | 1_1:+46121245 | Msa0024030:CDS |
| TTTGAAACATTAGGTGGATA+TGG | 0.215130 | 1_1:+46122839 | Msa0024030:intron |
| GTCTACTGTGGTAGCAGTTC+AGG | 0.251931 | 1_1:+46120289 | Msa0024030:CDS |
| CTAGTTCAACAGCAGCTTCT+TGG | 0.259502 | 1_1:-46120327 | None:intergenic |
| GATGGCGGACGCCATGTTCT+TGG | 0.292130 | 1_1:+46121314 | Msa0024030:CDS |
| AATCCTCTTAAACTTTGATT+TGG | 0.295009 | 1_1:-46120263 | None:intergenic |
| GATGCCTTCATTGCCCTTCC+TGG | 0.296660 | 1_1:+46122461 | Msa0024030:CDS |
| AGATAACTGGTGACCCTATT+GGG | 0.297013 | 1_1:+46122381 | Msa0024030:intron |
| ACGATAATGCGACGTGCCTT+TGG | 0.334696 | 1_1:-46124318 | None:intergenic |
| GGAATTGGTTAGGGGATTAG+AGG | 0.346976 | 1_1:+46124359 | Msa0024030:CDS |
| CAGATAACTGGTGACCCTAT+TGG | 0.351597 | 1_1:+46122380 | Msa0024030:intron |
| TCACATGGCAACTTCTGATT+CGG | 0.371578 | 1_1:-46124880 | None:intergenic |
| AAACCAAATCAAAGTTTAAG+AGG | 0.371717 | 1_1:+46120260 | Msa0024030:CDS |
| CGATAATGCGACGTGCCTTT+GGG | 0.375378 | 1_1:-46124317 | None:intergenic |
| TGGAACCCTTGAAGAATTGC+TGG | 0.377448 | 1_1:+46122859 | Msa0024030:CDS |
| ACTCAATGGTTTACCTCTCT+TGG | 0.379537 | 1_1:-46122249 | None:intergenic |
| GGTTGAGAGAAGGATTGATT+TGG | 0.380510 | 1_1:+46121238 | Msa0024030:intron |
| ACAGCTCTCACTTCCCCAAT+AGG | 0.386608 | 1_1:-46122395 | None:intergenic |
| TAAGACTAGTGGGCAATTGA+TGG | 0.388768 | 1_1:+46124913 | Msa0024030:three_prime_UTR |
| AATTGCTGGAAATTATTACT+TGG | 0.394745 | 1_1:+46122873 | Msa0024030:CDS |
| AGGTGGTAGTGTGGGTCTGA+TGG | 0.405577 | 1_1:+46121268 | Msa0024030:CDS |
| ATGGCGGACGCCATGTTCTT+GGG | 0.414120 | 1_1:+46121315 | Msa0024030:CDS |
| GGTGGTAGTGTGGGTCTGAT+GGG | 0.415803 | 1_1:+46121269 | Msa0024030:CDS |
| GTTTATGGAGGTGGTAGTGT+GGG | 0.418025 | 1_1:+46121260 | Msa0024030:CDS |
| CCACAGCCAAGGAATTGGTT+AGG | 0.425578 | 1_1:+46124349 | Msa0024030:CDS |
| GCATCAAAGGAAAGCTGAAA+TGG | 0.425795 | 1_1:+46122427 | Msa0024030:CDS |
| ACAGCAGCTTCTTGGTAAGT+AGG | 0.426650 | 1_1:-46120319 | None:intergenic |
| CACATGGCAACTTCTGATTC+GGG | 0.432879 | 1_1:-46124879 | None:intergenic |
| ATTGATTTGGTTTATGGAGG+TGG | 0.437781 | 1_1:+46121251 | Msa0024030:CDS |
| AGCATCCACAGCCAAGGAAT+TGG | 0.439181 | 1_1:+46124344 | Msa0024030:CDS |
| CACAGCCAAGGAATTGGTTA+GGG | 0.451858 | 1_1:+46124350 | Msa0024030:CDS |
| TCTCTTGGCATGAGACTCCT+AGG | 0.453788 | 1_1:-46122234 | None:intergenic |
| ATTATTACTTGGGCTCAACT+TGG | 0.456278 | 1_1:+46122884 | Msa0024030:CDS |
| GAAAGCTGAAATGGCTAGGC+AGG | 0.460252 | 1_1:+46122436 | Msa0024030:CDS |
| GTTTATGCAGTGTTATCCCT+AGG | 0.460934 | 1_1:+46122217 | Msa0024030:intron |
| GGTTTATGGAGGTGGTAGTG+TGG | 0.474379 | 1_1:+46121259 | Msa0024030:CDS |
| GATACATATTCATCTTGCTC+AGG | 0.480241 | 1_1:-46124822 | None:intergenic |
| ATTGACAAGGCCGTTGATGA+AGG | 0.480397 | 1_1:+46124285 | Msa0024030:CDS |
| CAGCTCTCACTTCCCCAATA+GGG | 0.481416 | 1_1:-46122394 | None:intergenic |
| ATTGCTGGAAATTATTACTT+GGG | 0.482520 | 1_1:+46122874 | Msa0024030:CDS |
| TAATTTCCAGCAATTCTTCA+AGG | 0.488686 | 1_1:-46122865 | None:intergenic |
| TCTTTCTTCCCACACCAACT+TGG | 0.497589 | 1_1:-46124844 | None:intergenic |
| AGGATTGATTTGGTTTATGG+AGG | 0.498565 | 1_1:+46121248 | Msa0024030:CDS |
| TGGTCGAAAATGCAGATAAC+TGG | 0.500494 | 1_1:+46122368 | Msa0024030:intron |
| CATACCAGGAAGGGCAATGA+AGG | 0.504465 | 1_1:-46122465 | None:intergenic |
| TTATTACTTGGGCTCAACTT+GGG | 0.511742 | 1_1:+46122885 | Msa0024030:CDS |
| CAATGTTGAAGGTTGAGAGA+AGG | 0.514544 | 1_1:+46121228 | Msa0024030:intron |
| AATTTCCAGCAATTCTTCAA+GGG | 0.517255 | 1_1:-46122864 | None:intergenic |
| TGTTGAACTAGCAAAAGAAA+TGG | 0.525403 | 1_1:+46120339 | Msa0024030:CDS |
| CCTAACCAATTCCTTGGCTG+TGG | 0.525618 | 1_1:-46124349 | None:intergenic |
| TCTACTGTGGTAGCAGTTCA+GGG | 0.526335 | 1_1:+46120290 | Msa0024030:CDS |
| TAATCCCCTAACCAATTCCT+TGG | 0.543230 | 1_1:-46124355 | None:intergenic |
| ACTTGGGATCCACAGCAAAC+CGG | 0.543825 | 1_1:+46122901 | Msa0024030:CDS |
| ATGATCTTATATAAGACTAG+TGG | 0.557119 | 1_1:+46124902 | Msa0024030:exon |
| CTGTATCTGATATGCATCAA+AGG | 0.557918 | 1_1:+46122414 | Msa0024030:CDS |
| GTTTCTCAAGCAGTTCATGA+TGG | 0.562470 | 1_1:+46121296 | Msa0024030:CDS |
| TGGTTCTTACCGGTTTGCTG+TGG | 0.572186 | 1_1:-46122910 | None:intergenic |
| AAAGGAAAGCTGAAATGGCT+AGG | 0.576735 | 1_1:+46122432 | Msa0024030:CDS |
| TGAAGGCTTTATTTCCCCAA+AGG | 0.581047 | 1_1:+46124302 | Msa0024030:CDS |
| GTGGGTCTATTGAATGTGGA+TGG | 0.585448 | 1_1:+46124237 | Msa0024030:CDS |
| GGAAATAAAGCCTTCATCAA+CGG | 0.588345 | 1_1:-46124295 | None:intergenic |
| CCAAGATTTCATACCAGGAA+GGG | 0.596878 | 1_1:-46122474 | None:intergenic |
| GATAATGCGACGTGCCTTTG+GGG | 0.597193 | 1_1:-46124316 | None:intergenic |
| ATTGTTGTGTTTCATTGACA+AGG | 0.598135 | 1_1:+46124272 | Msa0024030:CDS |
| CGTGTCAGCATCCACAGCCA+AGG | 0.598380 | 1_1:+46124338 | Msa0024030:CDS |
| TGATCTTATATAAGACTAGT+GGG | 0.598973 | 1_1:+46124903 | Msa0024030:three_prime_UTR |
| GCCAAGATTTCATACCAGGA+AGG | 0.602177 | 1_1:-46122475 | None:intergenic |
| GCAGGTGGGTCTATTGAATG+TGG | 0.607073 | 1_1:+46124233 | Msa0024030:intron |
| AGATGAATATGTATCCAAGT+TGG | 0.616544 | 1_1:+46124830 | Msa0024030:CDS |
| AAGAAACTAACCCAAGAACA+TGG | 0.618263 | 1_1:-46121325 | None:intergenic |
| GATAACTGGTGACCCTATTG+GGG | 0.618479 | 1_1:+46122382 | Msa0024030:intron |
| AATATGTATCCAAGTTGGTG+TGG | 0.623210 | 1_1:+46124835 | Msa0024030:CDS |
| ACAGCCAAGGAATTGGTTAG+GGG | 0.625582 | 1_1:+46124351 | Msa0024030:CDS |
| CTCTTGGCATGAGACTCCTA+GGG | 0.627464 | 1_1:-46122233 | None:intergenic |
| AAGAGGATTTGTGTCTACTG+TGG | 0.635693 | 1_1:+46120277 | Msa0024030:CDS |
| TCTCAAGCAGTTCATGATGG+CGG | 0.641857 | 1_1:+46121299 | Msa0024030:CDS |
| TAGGAGTCTCATGCCAAGAG+AGG | 0.642075 | 1_1:+46122236 | Msa0024030:CDS |
| ATATGTATCCAAGTTGGTGT+GGG | 0.680600 | 1_1:+46124836 | Msa0024030:CDS |
| TCTTATATAAGATCATCACA+TGG | 0.748551 | 1_1:-46124895 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTTTTTATATTTTA+TGG | + | chr1_1:46120479-46120498 | Msa0024030:intron | 0.0% |
| !! | AAAAAAAAAAAAAAAAAAAA+AGG | - | chr1_1:46120997-46121016 | None:intergenic | 0.0% |
| !!! | AAATAAAATTAAAAAATTTT+GGG | - | chr1_1:46121029-46121048 | None:intergenic | 0.0% |
| !!! | AAAATAAAATTAAAAAATTT+TGG | - | chr1_1:46121030-46121049 | None:intergenic | 0.0% |
| !!! | ATGTAAAAAAATACATTTTT+TGG | - | chr1_1:46120455-46120474 | None:intergenic | 10.0% |
| !! | GAAAAAATAAAAATAAACAA+AGG | - | chr1_1:46120619-46120638 | None:intergenic | 10.0% |
| !! | TATAAATTTACTATATAATG+TGG | + | chr1_1:46121801-46121820 | Msa0024030:intron | 10.0% |
| !!! | TTAAATTTTACTTGTATTTT+AGG | - | chr1_1:46122976-46122995 | None:intergenic | 10.0% |
| !!! | TATGTTTTAGTTTTTTTTTT+TGG | + | chr1_1:46123568-46123587 | Msa0024030:intron | 10.0% |
| !!! | ATGTTTTAGTTTTTTTTTTT+GGG | + | chr1_1:46123569-46123588 | Msa0024030:intron | 10.0% |
| !!! | TTGATTGTTTAATATTTTTA+TGG | + | chr1_1:46124209-46124228 | Msa0024030:intron | 10.0% |
| !! | AAAGAAAACATCTTTATTAT+AGG | - | chr1_1:46120387-46120406 | None:intergenic | 15.0% |
| !!! | AAAAAAATACATTTTTTGGA+AGG | - | chr1_1:46120451-46120470 | None:intergenic | 15.0% |
| !!! | AACTTCTGTATTTTAAAAAT+AGG | + | chr1_1:46121394-46121413 | Msa0024030:intron | 15.0% |
| !! | TTGAAATCATTAATTTCTTA+GGG | - | chr1_1:46121658-46121677 | None:intergenic | 15.0% |
| !! | ATTGAAATCATTAATTTCTT+AGG | - | chr1_1:46121659-46121678 | None:intergenic | 15.0% |
| !!! | ACAAGACAAAAATATTTTAA+TGG | - | chr1_1:46122162-46122181 | None:intergenic | 15.0% |
| !! | TTTGTTAATAAAATATATGG+TGG | + | chr1_1:46122348-46122367 | Msa0024030:intron | 15.0% |
| !! | ATAAATAAAAAAGAGTAGTA+TGG | - | chr1_1:46122933-46122952 | None:intergenic | 15.0% |
| !!! | CTAGTTTGTTTAATTATAAA+AGG | - | chr1_1:46123289-46123308 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | + | chr1_1:46124477-46124496 | Msa0024030:intron | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | + | chr1_1:46124478-46124497 | Msa0024030:intron | 15.0% |
| !!! | TCATGTTCATATTTTTTTTG+TGG | + | chr1_1:46120551-46120570 | Msa0024030:intron | 20.0% |
| !!! | TTTTATAAAGTTCCAAATCT+AGG | + | chr1_1:46120650-46120669 | Msa0024030:intron | 20.0% |
| !! | TAAAAATCATGAAAGATTGT+GGG | - | chr1_1:46120957-46120976 | None:intergenic | 20.0% |
| !! | ATAAAAATCATGAAAGATTG+TGG | - | chr1_1:46120958-46120977 | None:intergenic | 20.0% |
| !! | ATTTCAATGTAAGACATTAT+GGG | + | chr1_1:46121671-46121690 | Msa0024030:intron | 20.0% |
| !! | ATAAAATATTAGTAGAGTGT+GGG | + | chr1_1:46121699-46121718 | Msa0024030:intron | 20.0% |
| !! | ACTATATAATGTGGTTAATT+TGG | + | chr1_1:46121810-46121829 | Msa0024030:intron | 20.0% |
| !! | ATTGTTGAGTTTATATAAAG+CGG | + | chr1_1:46121844-46121863 | Msa0024030:intron | 20.0% |
| !!! | ATGTGTATAACTTTTACTTA+TGG | + | chr1_1:46121885-46121904 | Msa0024030:intron | 20.0% |
| !!! | CATTTTTAGTAATACTTCAT+CGG | + | chr1_1:46122560-46122579 | Msa0024030:intron | 20.0% |
| !!! | TCTTGTTATTTTGAAACATT+AGG | + | chr1_1:46122830-46122849 | Msa0024030:intron | 20.0% |
| !!! | ATTTTACTTGTATTTTAGGA+CGG | - | chr1_1:46122972-46122991 | None:intergenic | 20.0% |
| !! | TCTACAAAAATTAATGTATC+TGG | + | chr1_1:46122996-46123015 | Msa0024030:intron | 20.0% |
| !!! | GTAACATAAGTTGATATATT+TGG | - | chr1_1:46123038-46123057 | None:intergenic | 20.0% |
| !! | TATGTCTTATGATAACAAAT+TGG | - | chr1_1:46123087-46123106 | None:intergenic | 20.0% |
| !! | TTATGTCTCTATTATAACTT+TGG | - | chr1_1:46123185-46123204 | None:intergenic | 20.0% |
| !!! | AAAACAATGGTTTTTAAACA+TGG | - | chr1_1:46123516-46123535 | None:intergenic | 20.0% |
| !! | TATTGAATATAAAGTGAAGA+TGG | - | chr1_1:46124409-46124428 | None:intergenic | 20.0% |
| !!! | AGAAAAGTGTATAAATAAAG+GGG | + | chr1_1:46124479-46124498 | Msa0024030:intron | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr1_1:46124502-46124521 | Msa0024030:intron | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+AGG | + | chr1_1:46124576-46124595 | Msa0024030:intron | 20.0% |
| !!! | TTGAAATAGGTTAGTTATTT+TGG | + | chr1_1:46124589-46124608 | Msa0024030:intron | 20.0% |
| !!! | TGAAATAGGTTAGTTATTTT+GGG | + | chr1_1:46124590-46124609 | Msa0024030:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | chr1_1:46124612-46124631 | Msa0024030:intron | 20.0% |
| ! | AAACCAAATCAAAGTTTAAG+AGG | + | chr1_1:46120260-46120279 | Msa0024030:CDS | 25.0% |
| ! | AATCCTCTTAAACTTTGATT+TGG | - | chr1_1:46120266-46120285 | None:intergenic | 25.0% |
| ! | CTTTGTATCATTACACTATA+CGG | + | chr1_1:46120906-46120925 | Msa0024030:intron | 25.0% |
| !! | ATAGAGATTGATTGATTTAG+TGG | - | chr1_1:46121066-46121085 | None:intergenic | 25.0% |
| !!! | TTTTATTGATTGCTAAGAAG+TGG | + | chr1_1:46121591-46121610 | Msa0024030:intron | 25.0% |
| !! | TTTATTGATTGCTAAGAAGT+GGG | + | chr1_1:46121592-46121611 | Msa0024030:intron | 25.0% |
| ! | GATTTCAATGTAAGACATTA+TGG | + | chr1_1:46121670-46121689 | Msa0024030:intron | 25.0% |
| ! | TTTCAATGTAAGACATTATG+GGG | + | chr1_1:46121672-46121691 | Msa0024030:intron | 25.0% |
| ! | CATAAAATATTAGTAGAGTG+TGG | + | chr1_1:46121698-46121717 | Msa0024030:intron | 25.0% |
| ! | TACATTTAGAAGCTTCTATA+GGG | - | chr1_1:46121748-46121767 | None:intergenic | 25.0% |
| ! | TTGTTGAGTTTATATAAAGC+GGG | + | chr1_1:46121845-46121864 | Msa0024030:intron | 25.0% |
| !!! | TTTTGAAGACATTGGTTAAA+AGG | + | chr1_1:46121917-46121936 | Msa0024030:intron | 25.0% |
| ! | TCTGTAAAAAATAAGCCAAA+AGG | - | chr1_1:46121949-46121968 | None:intergenic | 25.0% |
| ! | GACTAATGATGTATGTTATA+TGG | + | chr1_1:46122189-46122208 | Msa0024030:intron | 25.0% |
| !! | CGATGAAGTATTACTAAAAA+TGG | - | chr1_1:46122562-46122581 | None:intergenic | 25.0% |
| !!! | TGTTATTTTGAAACATTAGG+TGG | + | chr1_1:46122833-46122852 | Msa0024030:intron | 25.0% |
| ! | AATTGCTGGAAATTATTACT+TGG | + | chr1_1:46122873-46122892 | Msa0024030:CDS | 25.0% |
| ! | ATTGCTGGAAATTATTACTT+GGG | + | chr1_1:46122874-46122893 | Msa0024030:CDS | 25.0% |
| ! | CTATAACCAAAGAAGTAAAA+CGG | - | chr1_1:46123117-46123136 | None:intergenic | 25.0% |
| ! | TTTACTTCTTTGGTTATAGT+TGG | + | chr1_1:46123118-46123137 | Msa0024030:intron | 25.0% |
| ! | TTACTTCTTTGGTTATAGTT+GGG | + | chr1_1:46123119-46123138 | Msa0024030:intron | 25.0% |
| ! | CTTAAGATACGTAAAAACAA+TGG | - | chr1_1:46123529-46123548 | None:intergenic | 25.0% |
| ! | TAAGCATGATACATAACATT+AGG | + | chr1_1:46123635-46123654 | Msa0024030:intron | 25.0% |
| ! | ACATGAAAAGATAGTACTTT+AGG | + | chr1_1:46123713-46123732 | Msa0024030:intron | 25.0% |
| ! | CAAAAAACCAATAAAGTTGT+TGG | + | chr1_1:46123882-46123901 | Msa0024030:intron | 25.0% |
| !! | TTAGTAATTCACATTTTCGT+CGG | + | chr1_1:46124032-46124051 | Msa0024030:intron | 25.0% |
| !!! | GTTTAATATTTTTATGGTGC+AGG | + | chr1_1:46124215-46124234 | Msa0024030:intron | 25.0% |
| ! | CAAAGTAGGTCAATTAAATT+GGG | - | chr1_1:46124442-46124461 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr1_1:46124501-46124520 | Msa0024030:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | chr1_1:46124611-46124630 | Msa0024030:intron | 25.0% |
| ! | ATACATATTGCTAAAACAAG+TGG | + | chr1_1:46124730-46124749 | Msa0024030:intron | 25.0% |
| ! | TACATATTGCTAAAACAAGT+GGG | + | chr1_1:46124731-46124750 | Msa0024030:intron | 25.0% |
| ! | TCTTATATAAGATCATCACA+TGG | - | chr1_1:46124898-46124917 | None:intergenic | 25.0% |
| ! | ATGATCTTATATAAGACTAG+TGG | + | chr1_1:46124902-46124921 | Msa0024030:exon | 25.0% |
| ! | TGATCTTATATAAGACTAGT+GGG | + | chr1_1:46124903-46124922 | Msa0024030:three_prime_UTR | 25.0% |
| TGTTGAACTAGCAAAAGAAA+TGG | + | chr1_1:46120339-46120358 | Msa0024030:CDS | 30.0% | |
| ATAAACAAAGGAGAAGAAAG+AGG | - | chr1_1:46120607-46120626 | None:intergenic | 30.0% | |
| CAACAATCTTAACCTAGATT+TGG | - | chr1_1:46120665-46120684 | None:intergenic | 30.0% | |
| AATCTAGGTTAAGATTGTTG+AGG | + | chr1_1:46120665-46120684 | Msa0024030:intron | 30.0% | |
| !!! | AGATTGTTTTATTTGCTAGC+TGG | + | chr1_1:46120695-46120714 | Msa0024030:intron | 30.0% |
| AAAACTAAGATCATGCAAGA+AGG | - | chr1_1:46120743-46120762 | None:intergenic | 30.0% | |
| AAAAAAAAAAAGGTAGCCCT+TGG | - | chr1_1:46120988-46121007 | None:intergenic | 30.0% | |
| !! | TTGTTACTTTCTTTCTTGCT+TGG | + | chr1_1:46121149-46121168 | Msa0024030:intron | 30.0% |
| ! | GTTTGTGTTTTCAATGTTGA+AGG | + | chr1_1:46121217-46121236 | Msa0024030:intron | 30.0% |
| !! | AGAAGGATTGATTTGGTTTA+TGG | + | chr1_1:46121245-46121264 | Msa0024030:CDS | 30.0% |
| !! | TTTTCAACTAGAGTTCTGAT+GGG | - | chr1_1:46121450-46121469 | None:intergenic | 30.0% |
| !! | ATTTTCAACTAGAGTTCTGA+TGG | - | chr1_1:46121451-46121470 | None:intergenic | 30.0% |
| GTTGAAAATACACACAATCT+AGG | + | chr1_1:46121462-46121481 | Msa0024030:intron | 30.0% | |
| GTCTATATCTATGTGTTTGT+TGG | + | chr1_1:46121548-46121567 | Msa0024030:intron | 30.0% | |
| TCATTAATTTCTTAGGGAAC+AGG | - | chr1_1:46121652-46121671 | None:intergenic | 30.0% | |
| TTCAATGTAAGACATTATGG+GGG | + | chr1_1:46121673-46121692 | Msa0024030:intron | 30.0% | |
| ACATTTAGAAGCTTCTATAG+GGG | - | chr1_1:46121747-46121766 | None:intergenic | 30.0% | |
| CTACATTTAGAAGCTTCTAT+AGG | - | chr1_1:46121749-46121768 | None:intergenic | 30.0% | |
| CTATAGAAGCTTCTAAATGT+AGG | + | chr1_1:46121747-46121766 | Msa0024030:intron | 30.0% | |
| CTTCTAAATGTAGGATGTAA+GGG | + | chr1_1:46121756-46121775 | Msa0024030:intron | 30.0% | |
| TGTTGAGTTTATATAAAGCG+GGG | + | chr1_1:46121846-46121865 | Msa0024030:intron | 30.0% | |
| !! | TAGAAGCTTTTTGAAGACAT+TGG | + | chr1_1:46121909-46121928 | Msa0024030:intron | 30.0% |
| CTACACTAGTAAAACATGAA+TGG | + | chr1_1:46122497-46122516 | Msa0024030:intron | 30.0% | |
| ! | TTTGGTTCAATGAAAGTCTT+TGG | - | chr1_1:46122664-46122683 | None:intergenic | 30.0% |
| AATGTATGAAGCCTCTAATA+TGG | - | chr1_1:46122689-46122708 | None:intergenic | 30.0% | |
| TAGGATATTATCATGTGAAG+TGG | + | chr1_1:46122766-46122785 | Msa0024030:intron | 30.0% | |
| AGGATATTATCATGTGAAGT+GGG | + | chr1_1:46122767-46122786 | Msa0024030:intron | 30.0% | |
| ATTTGGTTAACACATGAAGT+TGG | + | chr1_1:46122797-46122816 | Msa0024030:intron | 30.0% | |
| ! | TTTGAAACATTAGGTGGATA+TGG | + | chr1_1:46122839-46122858 | Msa0024030:intron | 30.0% |
| AATTTCCAGCAATTCTTCAA+GGG | - | chr1_1:46122867-46122886 | None:intergenic | 30.0% | |
| TAATTTCCAGCAATTCTTCA+AGG | - | chr1_1:46122868-46122887 | None:intergenic | 30.0% | |
| !!! | TATATGCCGTTTTACTTCTT+TGG | + | chr1_1:46123108-46123127 | Msa0024030:intron | 30.0% |
| TACTTCTTTGGTTATAGTTG+GGG | + | chr1_1:46123120-46123139 | Msa0024030:intron | 30.0% | |
| TATAATTGAACCGAAACATG+TGG | + | chr1_1:46123672-46123691 | Msa0024030:intron | 30.0% | |
| ATAATTGAACCGAAACATGT+GGG | + | chr1_1:46123673-46123692 | Msa0024030:intron | 30.0% | |
| GATATATGACGTTAGATTGA+TGG | + | chr1_1:46123779-46123798 | Msa0024030:intron | 30.0% | |
| ATATCTTTCTCCCATTCAAA+TGG | - | chr1_1:46123809-46123828 | None:intergenic | 30.0% | |
| ! | AGAGCAATTCACATTTTTGT+CGG | + | chr1_1:46123950-46123969 | Msa0024030:intron | 30.0% |
| !! | TAATATTTTTATGGTGCAGG+TGG | + | chr1_1:46124218-46124237 | Msa0024030:intron | 30.0% |
| !! | AATATTTTTATGGTGCAGGT+GGG | + | chr1_1:46124219-46124238 | Msa0024030:intron | 30.0% |
| ATTGTTGTGTTTCATTGACA+AGG | + | chr1_1:46124272-46124291 | Msa0024030:CDS | 30.0% | |
| CCAAAGTAGGTCAATTAAAT+TGG | - | chr1_1:46124443-46124462 | None:intergenic | 30.0% | |
| CCAATTTAATTGACCTACTT+TGG | + | chr1_1:46124440-46124459 | Msa0024030:intron | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr1_1:46124486-46124505 | Msa0024030:intron | 30.0% | |
| CATTTAATGTTATGTGAAGC+AGG | + | chr1_1:46124791-46124810 | Msa0024030:intron | 30.0% | |
| AGATGAATATGTATCCAAGT+TGG | + | chr1_1:46124830-46124849 | Msa0024030:CDS | 30.0% | |
| ! | AGAAGAAAGAGGTGTAACAA+GGG | - | chr1_1:46120596-46120615 | None:intergenic | 35.0% |
| ! | AATGCTTTCTGCACTTTTCT+AGG | + | chr1_1:46120866-46120885 | Msa0024030:intron | 35.0% |
| AAGATTGTGGGAAATGGTAA+AGG | - | chr1_1:46120945-46120964 | None:intergenic | 35.0% | |
| TCATGAAAGATTGTGGGAAA+TGG | - | chr1_1:46120951-46120970 | None:intergenic | 35.0% | |
| ! | TGATTTTTATCCTACAGCCA+AGG | + | chr1_1:46120968-46120987 | Msa0024030:intron | 35.0% |
| ! | GATTTTTATCCTACAGCCAA+GGG | + | chr1_1:46120969-46120988 | Msa0024030:intron | 35.0% |
| ACTTTCTTTCTTGCTTGGTT+TGG | + | chr1_1:46121154-46121173 | Msa0024030:intron | 35.0% | |
| !! | AGGATTGATTTGGTTTATGG+AGG | + | chr1_1:46121248-46121267 | Msa0024030:CDS | 35.0% |
| !! | ATTGATTTGGTTTATGGAGG+TGG | + | chr1_1:46121251-46121270 | Msa0024030:CDS | 35.0% |
| AAGAAACTAACCCAAGAACA+TGG | - | chr1_1:46121328-46121347 | None:intergenic | 35.0% | |
| GGGATCTGATGCATTAATAT+TGG | - | chr1_1:46121430-46121449 | None:intergenic | 35.0% | |
| ! | CTATGTGTTTGTTGGATGAA+AGG | + | chr1_1:46121556-46121575 | Msa0024030:intron | 35.0% |
| ATTTAGAAGCTTCTATAGGG+GGG | - | chr1_1:46121745-46121764 | None:intergenic | 35.0% | |
| CATTTAGAAGCTTCTATAGG+GGG | - | chr1_1:46121746-46121765 | None:intergenic | 35.0% | |
| GCTTCTAAATGTAGGATGTA+AGG | + | chr1_1:46121755-46121774 | Msa0024030:intron | 35.0% | |
| ! | GTTAAAAGGTGAATGCCTTT+TGG | + | chr1_1:46121931-46121950 | Msa0024030:intron | 35.0% |
| ! | TTTTACAGAAAGTTCATGCG+CGG | + | chr1_1:46121960-46121979 | Msa0024030:intron | 35.0% |
| AAAGGAAAAGGCAAAAACAC+TGG | - | chr1_1:46121995-46122014 | None:intergenic | 35.0% | |
| AAAGGACAGCATTAACTCAA+TGG | - | chr1_1:46122266-46122285 | None:intergenic | 35.0% | |
| CTGTATCTGATATGCATCAA+AGG | + | chr1_1:46122414-46122433 | Msa0024030:CDS | 35.0% | |
| !!! | CTTCATCGGTTTTTGTTTAC+CGG | + | chr1_1:46122574-46122593 | Msa0024030:intron | 35.0% |
| TGAACCAAAGACCATATTAG+AGG | + | chr1_1:46122675-46122694 | Msa0024030:intron | 35.0% | |
| GTGAAGTGGGATTCTTAATT+TGG | + | chr1_1:46122780-46122799 | Msa0024030:intron | 35.0% | |
| ATTATTACTTGGGCTCAACT+TGG | + | chr1_1:46122884-46122903 | Msa0024030:CDS | 35.0% | |
| TTATTACTTGGGCTCAACTT+GGG | + | chr1_1:46122885-46122904 | Msa0024030:CDS | 35.0% | |
| AAGAGTAGTATGGTTCTTAC+CGG | - | chr1_1:46122923-46122942 | None:intergenic | 35.0% | |
| ACTTCTTTGGTTATAGTTGG+GGG | + | chr1_1:46123121-46123140 | Msa0024030:intron | 35.0% | |
| GTATGACATGCATCATAGAT+AGG | - | chr1_1:46123476-46123495 | None:intergenic | 35.0% | |
| TAATTGAACCGAAACATGTG+GGG | + | chr1_1:46123674-46123693 | Msa0024030:intron | 35.0% | |
| ATTCAATACCCCACATGTTT+CGG | - | chr1_1:46123685-46123704 | None:intergenic | 35.0% | |
| ! | TTGATGGTTCTCCATTTGAA+TGG | + | chr1_1:46123795-46123814 | Msa0024030:intron | 35.0% |
| TGATGGTTCTCCATTTGAAT+GGG | + | chr1_1:46123796-46123815 | Msa0024030:intron | 35.0% | |
| CCATTGACCAACAACTTTAT+TGG | - | chr1_1:46123892-46123911 | None:intergenic | 35.0% | |
| CCAATAAAGTTGTTGGTCAA+TGG | + | chr1_1:46123889-46123908 | Msa0024030:intron | 35.0% | |
| GGAAATAAAGCCTTCATCAA+CGG | - | chr1_1:46124298-46124317 | None:intergenic | 35.0% | |
| GTAGGTCAATTAAATTGGGA+CGG | - | chr1_1:46124438-46124457 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | - | chr1_1:46124456-46124475 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | + | chr1_1:46124625-46124644 | Msa0024030:intron | 35.0% | |
| GATACATATTCATCTTGCTC+AGG | - | chr1_1:46124825-46124844 | None:intergenic | 35.0% | |
| !! | AATATGTATCCAAGTTGGTG+TGG | + | chr1_1:46124835-46124854 | Msa0024030:CDS | 35.0% |
| !! | ATATGTATCCAAGTTGGTGT+GGG | + | chr1_1:46124836-46124855 | Msa0024030:CDS | 35.0% |
| AAGAGGATTTGTGTCTACTG+TGG | + | chr1_1:46120277-46120296 | Msa0024030:CDS | 40.0% | |
| ! | GAGAAGAAAGAGGTGTAACA+AGG | - | chr1_1:46120597-46120616 | None:intergenic | 40.0% |
| CAATGTTGAAGGTTGAGAGA+AGG | + | chr1_1:46121228-46121247 | Msa0024030:intron | 40.0% | |
| GGTTGAGAGAAGGATTGATT+TGG | + | chr1_1:46121238-46121257 | Msa0024030:intron | 40.0% | |
| GTTTCTCAAGCAGTTCATGA+TGG | + | chr1_1:46121296-46121315 | Msa0024030:CDS | 40.0% | |
| ATTTCTTAGGGAACAGGCAT+GGG | - | chr1_1:46121646-46121665 | None:intergenic | 40.0% | |
| AATTTCTTAGGGAACAGGCA+TGG | - | chr1_1:46121647-46121666 | None:intergenic | 40.0% | |
| TTTACAGAAAGTTCATGCGC+GGG | + | chr1_1:46121961-46121980 | Msa0024030:intron | 40.0% | |
| GCATGCAAGTGAAAAGGAAA+AGG | - | chr1_1:46122007-46122026 | None:intergenic | 40.0% | |
| CAAAGTGCATGCAAGTGAAA+AGG | - | chr1_1:46122013-46122032 | None:intergenic | 40.0% | |
| GTTTATGCAGTGTTATCCCT+AGG | + | chr1_1:46122217-46122236 | Msa0024030:intron | 40.0% | |
| ACTCAATGGTTTACCTCTCT+TGG | - | chr1_1:46122252-46122271 | None:intergenic | 40.0% | |
| GATCTTATTGCAACGAGCAA+AGG | - | chr1_1:46122284-46122303 | None:intergenic | 40.0% | |
| TGGTCGAAAATGCAGATAAC+TGG | + | chr1_1:46122368-46122387 | Msa0024030:intron | 40.0% | |
| AGATAACTGGTGACCCTATT+GGG | + | chr1_1:46122381-46122400 | Msa0024030:intron | 40.0% | |
| GCATCAAAGGAAAGCTGAAA+TGG | + | chr1_1:46122427-46122446 | Msa0024030:CDS | 40.0% | |
| AAAGGAAAGCTGAAATGGCT+AGG | + | chr1_1:46122432-46122451 | Msa0024030:CDS | 40.0% | |
| CCAAGATTTCATACCAGGAA+GGG | - | chr1_1:46122477-46122496 | None:intergenic | 40.0% | |
| TGTAGCCAAGATTTCATACC+AGG | - | chr1_1:46122482-46122501 | None:intergenic | 40.0% | |
| AAATGGTCAATTCGACACGT+GGG | - | chr1_1:46122545-46122564 | None:intergenic | 40.0% | |
| AAAATGGTCAATTCGACACG+TGG | - | chr1_1:46122546-46122565 | None:intergenic | 40.0% | |
| CATGTGGATCTGGTAAAATC+CGG | - | chr1_1:46122596-46122615 | None:intergenic | 40.0% | |
| ! | GATTTTACCAGATCCACATG+TGG | + | chr1_1:46122596-46122615 | Msa0024030:intron | 40.0% |
| ATCCACATGTGGACCATATA+TGG | + | chr1_1:46122607-46122626 | Msa0024030:intron | 40.0% | |
| GAAGCCTCTAATATGGTCTT+TGG | - | chr1_1:46122682-46122701 | None:intergenic | 40.0% | |
| AGAGCATACTCATGTGAAGT+AGG | + | chr1_1:46122747-46122766 | Msa0024030:intron | 40.0% | |
| AATTCCAGAGAGTTCACAAG+AGG | - | chr1_1:46123324-46123343 | None:intergenic | 40.0% | |
| ! | ATAGGAGGCAAAGTTGGTTA+AGG | - | chr1_1:46123458-46123477 | None:intergenic | 40.0% |
| TCATAGATAGGAGGCAAAGT+TGG | - | chr1_1:46123464-46123483 | None:intergenic | 40.0% | |
| TGACATGCATCATAGATAGG+AGG | - | chr1_1:46123473-46123492 | None:intergenic | 40.0% | |
| !! | TGAAGGCTTTATTTCCCCAA+AGG | + | chr1_1:46124302-46124321 | Msa0024030:CDS | 40.0% |
| TAATCCCCTAACCAATTCCT+TGG | - | chr1_1:46124358-46124377 | None:intergenic | 40.0% | |
| AAGTGAAGATGGTTGAGCAA+TGG | - | chr1_1:46124398-46124417 | None:intergenic | 40.0% | |
| GTCAATTAAATTGGGACGGA+GGG | - | chr1_1:46124434-46124453 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | + | chr1_1:46124626-46124645 | Msa0024030:intron | 40.0% | |
| TCACATGGCAACTTCTGATT+CGG | - | chr1_1:46124883-46124902 | None:intergenic | 40.0% | |
| ! | TAAGACTAGTGGGCAATTGA+TGG | + | chr1_1:46124913-46124932 | Msa0024030:three_prime_UTR | 40.0% |
| TCTACTGTGGTAGCAGTTCA+GGG | + | chr1_1:46120290-46120309 | Msa0024030:CDS | 45.0% | |
| ACAGCAGCTTCTTGGTAAGT+AGG | - | chr1_1:46120322-46120341 | None:intergenic | 45.0% | |
| CTAGTTCAACAGCAGCTTCT+TGG | - | chr1_1:46120330-46120349 | None:intergenic | 45.0% | |
| ! | GTTTATGGAGGTGGTAGTGT+GGG | + | chr1_1:46121260-46121279 | Msa0024030:CDS | 45.0% |
| TCTCAAGCAGTTCATGATGG+CGG | + | chr1_1:46121299-46121318 | Msa0024030:CDS | 45.0% | |
| CAGATAACTGGTGACCCTAT+TGG | + | chr1_1:46122380-46122399 | Msa0024030:intron | 45.0% | |
| GATAACTGGTGACCCTATTG+GGG | + | chr1_1:46122382-46122401 | Msa0024030:intron | 45.0% | |
| CCCTTCCTGGTATGAAATCT+TGG | + | chr1_1:46122474-46122493 | Msa0024030:intron | 45.0% | |
| GCCAAGATTTCATACCAGGA+AGG | - | chr1_1:46122478-46122497 | None:intergenic | 45.0% | |
| ATATGGTCCACATGTGGATC+TGG | - | chr1_1:46122606-46122625 | None:intergenic | 45.0% | |
| GTCCATATATGGTCCACATG+TGG | - | chr1_1:46122612-46122631 | None:intergenic | 45.0% | |
| CATGTGGACCATATATGGAC+CGG | + | chr1_1:46122612-46122631 | Msa0024030:intron | 45.0% | |
| CAACAACTGTTGTAGCAGAC+CGG | - | chr1_1:46122634-46122653 | None:intergenic | 45.0% | |
| TGGAACCCTTGAAGAATTGC+TGG | + | chr1_1:46122859-46122878 | Msa0024030:CDS | 45.0% | |
| TAACTAGAGACATGCCTGAG+AGG | + | chr1_1:46123224-46123243 | Msa0024030:intron | 45.0% | |
| TTATTCCATTCCCACCTCTC+AGG | - | chr1_1:46123241-46123260 | None:intergenic | 45.0% | |
| GTGGGTCTATTGAATGTGGA+TGG | + | chr1_1:46124237-46124256 | Msa0024030:CDS | 45.0% | |
| ! | ATTGACAAGGCCGTTGATGA+AGG | + | chr1_1:46124285-46124304 | Msa0024030:CDS | 45.0% |
| CACAGCCAAGGAATTGGTTA+GGG | + | chr1_1:46124350-46124369 | Msa0024030:CDS | 45.0% | |
| ACAGCCAAGGAATTGGTTAG+GGG | + | chr1_1:46124351-46124370 | Msa0024030:CDS | 45.0% | |
| GGAATTGGTTAGGGGATTAG+AGG | + | chr1_1:46124359-46124378 | Msa0024030:CDS | 45.0% | |
| GGTCAATTAAATTGGGACGG+AGG | - | chr1_1:46124435-46124454 | None:intergenic | 45.0% | |
| ATATATTACTCCCTCCGTCC+CGG | - | chr1_1:46124647-46124666 | None:intergenic | 45.0% | |
| TCTTTCTTCCCACACCAACT+TGG | - | chr1_1:46124847-46124866 | None:intergenic | 45.0% | |
| CACATGGCAACTTCTGATTC+GGG | - | chr1_1:46124882-46124901 | None:intergenic | 45.0% | |
| !!! | TAATTTGTTAATAAAATATA+TGG | + | chr1_1:46122345-46122364 | Msa0024030:intron | 5.0% |
| !!! | TTTTTTTCTTTTTAATTATT+CGG | + | chr1_1:46123422-46123441 | Msa0024030:intron | 5.0% |
| GTCTACTGTGGTAGCAGTTC+AGG | + | chr1_1:46120289-46120308 | Msa0024030:CDS | 50.0% | |
| AAAAGGTAGCCCTTGGCTGT+AGG | - | chr1_1:46120981-46121000 | None:intergenic | 50.0% | |
| ! | GGTTTATGGAGGTGGTAGTG+TGG | + | chr1_1:46121259-46121278 | Msa0024030:CDS | 50.0% |
| GAAAGTTCATGCGCGGGAAT+TGG | + | chr1_1:46121967-46121986 | Msa0024030:intron | 50.0% | |
| CTCTTGGCATGAGACTCCTA+GGG | - | chr1_1:46122236-46122255 | None:intergenic | 50.0% | |
| TCTCTTGGCATGAGACTCCT+AGG | - | chr1_1:46122237-46122256 | None:intergenic | 50.0% | |
| TAGGAGTCTCATGCCAAGAG+AGG | + | chr1_1:46122236-46122255 | Msa0024030:CDS | 50.0% | |
| CAGCTCTCACTTCCCCAATA+GGG | - | chr1_1:46122397-46122416 | None:intergenic | 50.0% | |
| ACAGCTCTCACTTCCCCAAT+AGG | - | chr1_1:46122398-46122417 | None:intergenic | 50.0% | |
| GAAAGCTGAAATGGCTAGGC+AGG | + | chr1_1:46122436-46122455 | Msa0024030:CDS | 50.0% | |
| CATACCAGGAAGGGCAATGA+AGG | - | chr1_1:46122468-46122487 | None:intergenic | 50.0% | |
| GTAGCAGACCGGTCCATATA+TGG | - | chr1_1:46122623-46122642 | None:intergenic | 50.0% | |
| ACTTGGGATCCACAGCAAAC+CGG | + | chr1_1:46122901-46122920 | Msa0024030:CDS | 50.0% | |
| !! | TGGTTCTTACCGGTTTGCTG+TGG | - | chr1_1:46122913-46122932 | None:intergenic | 50.0% |
| TAGAGACATGCCTGAGAGGT+GGG | + | chr1_1:46123228-46123247 | Msa0024030:intron | 50.0% | |
| CTTGCCTCTTGTGAACTCTC+TGG | + | chr1_1:46123317-46123336 | Msa0024030:intron | 50.0% | |
| GCAGGTGGGTCTATTGAATG+TGG | + | chr1_1:46124233-46124252 | Msa0024030:intron | 50.0% | |
| GATAATGCGACGTGCCTTTG+GGG | - | chr1_1:46124319-46124338 | None:intergenic | 50.0% | |
| CGATAATGCGACGTGCCTTT+GGG | - | chr1_1:46124320-46124339 | None:intergenic | 50.0% | |
| ACGATAATGCGACGTGCCTT+TGG | - | chr1_1:46124321-46124340 | None:intergenic | 50.0% | |
| AGCATCCACAGCCAAGGAAT+TGG | + | chr1_1:46124344-46124363 | Msa0024030:CDS | 50.0% | |
| CCTAACCAATTCCTTGGCTG+TGG | - | chr1_1:46124352-46124371 | None:intergenic | 50.0% | |
| CCACAGCCAAGGAATTGGTT+AGG | + | chr1_1:46124349-46124368 | Msa0024030:CDS | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | + | chr1_1:46124630-46124649 | Msa0024030:intron | 50.0% | |
| ! | AGGTGGTAGTGTGGGTCTGA+TGG | + | chr1_1:46121268-46121287 | Msa0024030:CDS | 55.0% |
| ! | GGTGGTAGTGTGGGTCTGAT+GGG | + | chr1_1:46121269-46121288 | Msa0024030:CDS | 55.0% |
| !! | ATGGCGGACGCCATGTTCTT+GGG | + | chr1_1:46121315-46121334 | Msa0024030:CDS | 55.0% |
| GATGCCTTCATTGCCCTTCC+TGG | + | chr1_1:46122461-46122480 | Msa0024030:CDS | 55.0% | |
| GTCAATTCGACACGTGGGCT+CGG | - | chr1_1:46122540-46122559 | None:intergenic | 55.0% | |
| CTAGAGACATGCCTGAGAGG+TGG | + | chr1_1:46123227-46123246 | Msa0024030:intron | 55.0% | |
| ACATGCCTGAGAGGTGGGAA+TGG | + | chr1_1:46123233-46123252 | Msa0024030:intron | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | + | chr1_1:46124634-46124653 | Msa0024030:intron | 55.0% | |
| !! | GATGGCGGACGCCATGTTCT+TGG | + | chr1_1:46121314-46121333 | Msa0024030:CDS | 60.0% |
| CGTGTCAGCATCCACAGCCA+AGG | + | chr1_1:46124338-46124357 | Msa0024030:CDS | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | + | chr1_1:46124633-46124652 | Msa0024030:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 46120253 | 46124953 | 46120253 | ID=Msa0024030;Name=Msa0024030 |
| chr1_1 | mRNA | 46120253 | 46124953 | 46120253 | ID=Msa0024030-mRNA-1;Parent=Msa0024030;Name=Msa0024030-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.83|0.71|1|1|1|7|51|213 |
| chr1_1 | exon | 46120253 | 46120360 | 46120253 | ID=Msa0024030-mRNA-1:exon:13118;Parent=Msa0024030-mRNA-1 |
| chr1_1 | exon | 46121239 | 46121336 | 46121239 | ID=Msa0024030-mRNA-1:exon:13119;Parent=Msa0024030-mRNA-1 |
| chr1_1 | exon | 46122227 | 46122257 | 46122227 | ID=Msa0024030-mRNA-1:exon:13120;Parent=Msa0024030-mRNA-1 |
| chr1_1 | exon | 46122383 | 46122482 | 46122383 | ID=Msa0024030-mRNA-1:exon:13121;Parent=Msa0024030-mRNA-1 |
| chr1_1 | exon | 46122852 | 46122922 | 46122852 | ID=Msa0024030-mRNA-1:exon:13122;Parent=Msa0024030-mRNA-1 |
| chr1_1 | exon | 46124237 | 46124380 | 46124237 | ID=Msa0024030-mRNA-1:exon:13123;Parent=Msa0024030-mRNA-1 |
| chr1_1 | exon | 46124813 | 46124953 | 46124813 | ID=Msa0024030-mRNA-1:exon:13124;Parent=Msa0024030-mRNA-1 |
| chr1_1 | CDS | 46120253 | 46120360 | 46120253 | ID=Msa0024030-mRNA-1:cds;Parent=Msa0024030-mRNA-1 |
| chr1_1 | CDS | 46121239 | 46121336 | 46121239 | ID=Msa0024030-mRNA-1:cds;Parent=Msa0024030-mRNA-1 |
| chr1_1 | CDS | 46122227 | 46122257 | 46122227 | ID=Msa0024030-mRNA-1:cds;Parent=Msa0024030-mRNA-1 |
| chr1_1 | CDS | 46122383 | 46122482 | 46122383 | ID=Msa0024030-mRNA-1:cds;Parent=Msa0024030-mRNA-1 |
| chr1_1 | CDS | 46122852 | 46122922 | 46122852 | ID=Msa0024030-mRNA-1:cds;Parent=Msa0024030-mRNA-1 |
| chr1_1 | CDS | 46124237 | 46124380 | 46124237 | ID=Msa0024030-mRNA-1:cds;Parent=Msa0024030-mRNA-1 |
| chr1_1 | CDS | 46124813 | 46124902 | 46124813 | ID=Msa0024030-mRNA-1:cds;Parent=Msa0024030-mRNA-1 |
| chr1_1 | three_prime_UTR | 46124903 | 46124953 | 46124903 | ID=Msa0024030-mRNA-1:three_prime_utr;Parent=Msa0024030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
