AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0967780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0967780 MtrunA17_Chr1g0213031 94.196 224 12 1 1 224 1 223 1.62e-153 425
Msa0967780 MtrunA17_Chr1g0213021 89.189 222 24 0 5 226 4 225 5.48e-146 406
Msa0967780 MtrunA17_Chr1g0213011 61.538 221 85 0 6 226 2 222 9.05e-96 278
Msa0967780 MtrunA17_Chr1g0213051 51.598 219 104 1 5 221 2 220 7.22e-73 221
Msa0967780 MtrunA17_Chr1g0213041 49.528 212 105 1 9 218 6 217 7.81e-69 210
Msa0967780 MtrunA17_Chr7g0224381 45.238 168 92 0 5 172 2 169 1.11e-49 160
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0967780 AT3G55120.1 49.761 209 105 0 9 217 16 224 4.80e-67 207
Msa0967780 AT5G66230.2 45.205 219 111 2 9 226 6 216 1.68e-52 177
Msa0967780 AT5G66220.1 45.783 166 89 1 62 226 2 167 5.35e-43 143

Find 63 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAACTTAGAGAAGCCTTTA+AGG 0.168675 6_3:+97869267 Msa0967780:CDS
TTCAGGTATTGTCTCATCTT+TGG 0.255423 6_3:-97869454 None:intergenic
GGTGGAGTTCATTGAATTTC+CGG 0.261011 6_3:+97865005 Msa0967780:CDS
CAAACACCAAATGGAACATT+AGG 0.304549 6_3:+97869328 Msa0967780:CDS
GTTAGAGGGTTAGATATTGA+TGG 0.330562 6_3:+97868569 Msa0967780:CDS
ATGTTCCTTCAGATTTCATA+TGG 0.333432 6_3:-97869216 None:intergenic
TCCTATTTCCTTGGTGGTGC+AGG 0.335100 6_3:+97865057 Msa0967780:CDS
GCCTGCTTTGAAAGAGAGTT+TGG 0.339202 6_3:+97869554 Msa0967780:CDS
TCTTTCAAAGCAGGCGAAAC+AGG 0.349240 6_3:-97869546 None:intergenic
TAATGGTATGTAGGGGTTAG+AGG 0.356611 6_3:+97868554 Msa0967780:intron
ACCTGCACCACCAAGGAAAT+AGG 0.361057 6_3:-97865058 None:intergenic
TTTGTGAAGTTCACTGTATT+AGG 0.371421 6_3:+97868596 Msa0967780:CDS
CACTGTATTAGGAGTTTACT+TGG 0.384450 6_3:+97868607 Msa0967780:CDS
ATAACAGCATACTCATGTTC+AGG 0.391503 6_3:-97869471 None:intergenic
AAGATTGACGACTTCAACAT+TGG 0.399504 6_3:+97869600 Msa0967780:CDS
TATAAACAACAAGCCGCTTT+CGG 0.408427 6_3:+97869491 Msa0967780:CDS
AAACACCAAATGGAACATTA+GGG 0.415014 6_3:+97869329 Msa0967780:CDS
CTAACCCCTAATGTTCCATT+TGG 0.420625 6_3:-97869334 None:intergenic
TTCTTCAGACAAACACCAAA+TGG 0.421941 6_3:+97869319 Msa0967780:CDS
CACCTTCACTCCAGTGATCA+TGG 0.422784 6_3:-97864986 None:intergenic
GGCTTCTCTAAGTTCTTGAA+TGG 0.424062 6_3:-97869260 None:intergenic
AGGAGTTTACTTGGAAGAAA+AGG 0.434965 6_3:+97868616 Msa0967780:CDS
ACCAAGTCCTATTTCCTTGG+TGG 0.442954 6_3:+97865051 Msa0967780:CDS
ATGAAATCTGAAGGAACATA+TGG 0.443450 6_3:+97869220 Msa0967780:CDS
TCCACCAAGTCCTATTTCCT+TGG 0.465024 6_3:+97865048 Msa0967780:CDS
GCCGCTTTCGGAGGCAGTGT+TGG 0.468906 6_3:+97869503 Msa0967780:CDS
AAATAGGACTTGGTGGATGA+TGG 0.479938 6_3:-97865042 None:intergenic
GTTCATTGAATTTCCGGCAG+TGG 0.480687 6_3:+97865011 Msa0967780:CDS
GATGGAGGTGTCACCACTGC+CGG 0.484240 6_3:-97865024 None:intergenic
AGGTAGTGAATATGTGAGAA+AGG 0.489997 6_3:+97869174 Msa0967780:CDS
TGATATCTCGGTAGAAATCA+AGG 0.490821 6_3:-97868697 None:intergenic
CATCGAATAAATTTCTCAAA+GGG 0.503134 6_3:-97869130 None:intergenic
AATGGTATGTAGGGGTTAGA+GGG 0.508598 6_3:+97868555 Msa0967780:intron
GCCAAACTCTCTTTCAAAGC+AGG 0.514705 6_3:-97869555 None:intergenic
AACAGGAATTTCTCCGGTCA+TGG 0.514747 6_3:-97869529 None:intergenic
ACAAAGGTGAGAACACTAGA+AGG 0.516764 6_3:+97869154 Msa0967780:CDS
AGGGATTCAAAGAGCTGAGA+TGG 0.521295 6_3:-97868677 None:intergenic
TGTTCCTTCAGATTTCATAT+GGG 0.526558 6_3:-97869215 None:intergenic
TAGCATCACTTACTCCTAAG+TGG 0.528607 6_3:+97868642 Msa0967780:CDS
GCAGCAGCATCCATGATCAC+TGG 0.535344 6_3:+97864976 Msa0967780:CDS
ACCAAGGAAATAGGACTTGG+TGG 0.536120 6_3:-97865049 None:intergenic
ATCACTTACTCCTAAGTGGA+AGG 0.541188 6_3:+97868646 Msa0967780:CDS
ACATCGAATAAATTTCTCAA+AGG 0.541800 6_3:-97869131 None:intergenic
ATCCATGATCACTGGAGTGA+AGG 0.543867 6_3:+97864984 Msa0967780:CDS
GGAGTCTTGCCCTTCCACTT+AGG 0.546270 6_3:-97868656 None:intergenic
TGGTACCTTTGATGATATCT+CGG 0.556629 6_3:-97868709 None:intergenic
CTGAAGAAAACACCAGCCCC+TGG 0.557559 6_3:-97869304 None:intergenic
CATGATCACTGGAGTGAAGG+TGG 0.559960 6_3:+97864987 Msa0967780:CDS
GCAGTGTTGGAGACCATGAC+CGG 0.572482 6_3:+97869516 Msa0967780:CDS
AGGCGAAACAGGAATTTCTC+CGG 0.576812 6_3:-97869535 None:intergenic
GAAATTTATTCGATGTACAA+AGG 0.580122 6_3:+97869138 Msa0967780:CDS
TCCAACACTGCCTCCGAAAG+CGG 0.582725 6_3:-97869504 None:intergenic
ACCACCAAGGAAATAGGACT+TGG 0.610116 6_3:-97865052 None:intergenic
TTCTACCGAGATATCATCAA+AGG 0.610658 6_3:+97868704 Msa0967780:CDS
ATTGCCCATATGAAATCTGA+AGG 0.611017 6_3:+97869211 Msa0967780:CDS
AAACAACAAGCCGCTTTCGG+AGG 0.621155 6_3:+97869494 Msa0967780:CDS
TAGGACTTGGTGGATGATGG+AGG 0.628115 6_3:-97865039 None:intergenic
GATATCTCGGTAGAAATCAA+GGG 0.631456 6_3:-97868696 None:intergenic
AAGAAAACACCAGCCCCTGG+TGG 0.637698 6_3:-97869301 None:intergenic
TCACTTACTCCTAAGTGGAA+GGG 0.638389 6_3:+97868647 Msa0967780:CDS
AAGAAATACCTGCACCACCA+AGG 0.648491 6_3:-97865065 None:intergenic
ATAGCTATAAGCTATGGCAA+AGG 0.662193 6_3:+97864954 None:intergenic
AACACCAAATGGAACATTAG+GGG 0.677472 6_3:+97869330 Msa0967780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTATTATTATTTTTT+GGG - chr6_3:97867787-97867806 None:intergenic 0.0%
!!! TTTTTATTATTATTATTTTT+TGG - chr6_3:97867788-97867807 None:intergenic 0.0%
!! TCTAATAATTAATATATAAC+AGG + chr6_3:97865703-97865722 Msa0967780:intron 10.0%
!!! AAAAATAAATCTTTTTTATG+AGG - chr6_3:97865885-97865904 None:intergenic 10.0%
!!! AAAAAAAAAAAAAGTCTTTT+TGG - chr6_3:97866474-97866493 None:intergenic 10.0%
!! ATCAAAACTTTATAAAAAAA+AGG + chr6_3:97867123-97867142 Msa0967780:intron 10.0%
!! TCAAAACTTTATAAAAAAAA+GGG + chr6_3:97867124-97867143 Msa0967780:intron 10.0%
!! AATTACAGATATAAAAAATA+AGG + chr6_3:97867581-97867600 Msa0967780:intron 10.0%
!! ATTACAGATATAAAAAATAA+GGG + chr6_3:97867582-97867601 Msa0967780:intron 10.0%
!!! TTTTATTGATCATTCTTTTT+AGG - chr6_3:97865632-97865651 None:intergenic 15.0%
!! TTATACATTAACAATCTAAT+AGG + chr6_3:97865994-97866013 Msa0967780:intron 15.0%
!! TATCAAAATATAATGTAATG+TGG - chr6_3:97866024-97866043 None:intergenic 15.0%
!!! AAACATTTTCTTCTTTTTTA+TGG - chr6_3:97866175-97866194 None:intergenic 15.0%
!! TCAAATATAAATATAAGTAG+CGG - chr6_3:97866641-97866660 None:intergenic 15.0%
!!! AGAACCTTTTTTTTTTTTTT+AGG + chr6_3:97866702-97866721 Msa0967780:intron 15.0%
!! CTTACCTAAAAAAAAAAAAA+AGG - chr6_3:97866709-97866728 None:intergenic 15.0%
!! CATCTTACATTATTATATAA+AGG - chr6_3:97866763-97866782 None:intergenic 15.0%
!!! ACAATAGTTTTTATTGATAT+GGG - chr6_3:97867020-97867039 None:intergenic 15.0%
!!! AACAATAGTTTTTATTGATA+TGG - chr6_3:97867021-97867040 None:intergenic 15.0%
!!! AAAAGAATATTTCTATTTCT+GGG - chr6_3:97867646-97867665 None:intergenic 15.0%
!!! TAAAAGAATATTTCTATTTC+TGG - chr6_3:97867647-97867666 None:intergenic 15.0%
!! TATGTCTAATTAAAAAATTG+AGG + chr6_3:97868003-97868022 Msa0967780:intron 15.0%
!! ATGTCTAATTAAAAAATTGA+GGG + chr6_3:97868004-97868023 Msa0967780:intron 15.0%
!!! TGATATTTTAATAAACCTTA+AGG + chr6_3:97868035-97868054 Msa0967780:intron 15.0%
!!! GATATTTTAATAAACCTTAA+GGG + chr6_3:97868036-97868055 Msa0967780:intron 15.0%
!!! AATTTTGATGGTTTTTTTTA+GGG - chr6_3:97868078-97868097 None:intergenic 15.0%
!! AATGTATACTCATTTATATA+TGG + chr6_3:97869095-97869114 Msa0967780:intron 15.0%
!! ATGTATACTCATTTATATAT+GGG + chr6_3:97869096-97869115 Msa0967780:intron 15.0%
!!! TTAAAATGTGTTGATTAAAT+TGG - chr6_3:97869396-97869415 None:intergenic 15.0%
!! AATCTTTAACAAATGTCATA+TGG + chr6_3:97865584-97865603 Msa0967780:intron 20.0%
!! ATCTTTAACAAATGTCATAT+GGG + chr6_3:97865585-97865604 Msa0967780:intron 20.0%
!! AAATCTTACTTTCATAAGTT+TGG - chr6_3:97865734-97865753 None:intergenic 20.0%
!! ATTATAGATAATTACAACGA+GGG + chr6_3:97865812-97865831 Msa0967780:intron 20.0%
!!! ATAAATCTTTTTTATGAGGT+CGG - chr6_3:97865881-97865900 None:intergenic 20.0%
!! AAACATACTTAAAGTAAGTT+TGG + chr6_3:97866444-97866463 Msa0967780:intron 20.0%
!!! ATGGATATTTTAAAAAGTCA+CGG + chr6_3:97866525-97866544 Msa0967780:intron 20.0%
!! ACTCTATTGATATTAATATG+AGG - chr6_3:97866817-97866836 None:intergenic 20.0%
!!! ACTGTTTTTTTAAAACTAGA+GGG - chr6_3:97867198-97867217 None:intergenic 20.0%
!! TTTACCTTAAATTCCTTTAA+CGG + chr6_3:97867328-97867347 Msa0967780:intron 20.0%
!! ATAGATATACAATCAAAAAC+TGG - chr6_3:97867554-97867573 None:intergenic 20.0%
!! TGTCTAATTAAAAAATTGAG+GGG + chr6_3:97868005-97868024 Msa0967780:intron 20.0%
!!! CAATTTTGATGGTTTTTTTT+AGG - chr6_3:97868079-97868098 None:intergenic 20.0%
!! ATAACCATGATTTATCTAAA+AGG + chr6_3:97868254-97868273 Msa0967780:intron 20.0%
!!! TTTTCCATGATTTTCATTTT+CGG - chr6_3:97868411-97868430 None:intergenic 20.0%
!! TGAAAATCATGGAAAAATAT+TGG + chr6_3:97868415-97868434 Msa0967780:intron 20.0%
!! GAAAATCATGGAAAAATATT+GGG + chr6_3:97868416-97868435 Msa0967780:intron 20.0%
!!! GATGTTTTTTTTATTGCTAA+TGG + chr6_3:97868537-97868556 Msa0967780:intron 20.0%
!! TATCATTATGTAGTATATGT+TGG - chr6_3:97868732-97868751 None:intergenic 20.0%
!! GATATTTAGATACATGAAAT+AGG - chr6_3:97869374-97869393 None:intergenic 20.0%
! TCTTTAACAAATGTCATATG+GGG + chr6_3:97865586-97865605 Msa0967780:intron 25.0%
! AAGTTCATCTATTAGTTAGA+GGG - chr6_3:97865678-97865697 None:intergenic 25.0%
! AAAGTTCATCTATTAGTTAG+AGG - chr6_3:97865679-97865698 None:intergenic 25.0%
! GATTATAGATAATTACAACG+AGG + chr6_3:97865811-97865830 Msa0967780:intron 25.0%
! TTAAGTATGTTTGATCTCAT+CGG - chr6_3:97866436-97866455 None:intergenic 25.0%
! CAATCCAATGCAAAATTTAA+CGG + chr6_3:97866937-97866956 Msa0967780:intron 25.0%
! TATTTACAGTCACATACAAT+AGG - chr6_3:97867060-97867079 None:intergenic 25.0%
! GTTGTTTAATAAAACCTCAA+GGG - chr6_3:97867166-97867185 None:intergenic 25.0%
!! TGTTGTTTAATAAAACCTCA+AGG - chr6_3:97867167-97867186 None:intergenic 25.0%
!!! TGTTTTTTTAAAACTAGAGG+GGG - chr6_3:97867196-97867215 None:intergenic 25.0%
!!! CTGTTTTTTTAAAACTAGAG+GGG - chr6_3:97867197-97867216 None:intergenic 25.0%
!!! GACTGTTTTTTTAAAACTAG+AGG - chr6_3:97867199-97867218 None:intergenic 25.0%
! TTACCTTAAATTCCTTTAAC+GGG + chr6_3:97867329-97867348 Msa0967780:intron 25.0%
! TTGAAATGAAAGTTACGTAA+TGG - chr6_3:97867358-97867377 None:intergenic 25.0%
!! CAAATGTAGAAAGTTTTTGT+TGG - chr6_3:97867725-97867744 None:intergenic 25.0%
! AAAAAAAAGAGGACATAACA+AGG + chr6_3:97867803-97867822 Msa0967780:intron 25.0%
! AATTTCAAGGGAAATATAGT+GGG + chr6_3:97867826-97867845 Msa0967780:intron 25.0%
!!! TTCTTCCTCAATTTTTGAAA+CGG - chr6_3:97867890-97867909 None:intergenic 25.0%
! GTCTAATTAAAAAATTGAGG+GGG + chr6_3:97868006-97868025 Msa0967780:intron 25.0%
!!! ATTTTAATAAACCTTAAGGG+AGG + chr6_3:97868039-97868058 Msa0967780:intron 25.0%
!! TCAACCTTTTAGATAAATCA+TGG - chr6_3:97868261-97868280 None:intergenic 25.0%
!! TTTTATTGCTAATGGTATGT+AGG + chr6_3:97868545-97868564 Msa0967780:intron 25.0%
! TTTATTGCTAATGGTATGTA+GGG + chr6_3:97868546-97868565 Msa0967780:intron 25.0%
! TTCCATAACATTATTGATGT+AGG + chr6_3:97868794-97868813 Msa0967780:intron 25.0%
! TTCCTACATCAATAATGTTA+TGG - chr6_3:97868799-97868818 None:intergenic 25.0%
! TTTATTGTCGACAAAAACTA+CGG + chr6_3:97868954-97868973 Msa0967780:intron 25.0%
! ACATGCTAACTATAATTCAT+TGG - chr6_3:97868996-97869015 None:intergenic 25.0%
! ATTTATATATGGGTGTGTTT+AGG + chr6_3:97869106-97869125 Msa0967780:intron 25.0%
! CATCGAATAAATTTCTCAAA+GGG - chr6_3:97869133-97869152 None:intergenic 25.0%
! ACATCGAATAAATTTCTCAA+AGG - chr6_3:97869134-97869153 None:intergenic 25.0%
! GAAATTTATTCGATGTACAA+AGG + chr6_3:97869138-97869157 Msa0967780:CDS 25.0%
! TGGAAAAAATTGAACCTTAA+AGG - chr6_3:97869284-97869303 None:intergenic 25.0%
! CTTATAATGTTTTCACTGCT+AGG + chr6_3:97865120-97865139 Msa0967780:intron 30.0%
CTGAACAATTCATAGTTCTT+TGG + chr6_3:97865407-97865426 Msa0967780:intron 30.0%
!! TGAATACACAGTTCTAAAGA+TGG - chr6_3:97865501-97865520 None:intergenic 30.0%
AACTCATATGGTGTTTAATC+TGG + chr6_3:97865776-97865795 Msa0967780:intron 30.0%
TTTAATCTGGTAAGTATGGT+GGG + chr6_3:97865789-97865808 Msa0967780:intron 30.0%
GTTTCGTGAGGAAATAATTT+GGG - chr6_3:97866323-97866342 None:intergenic 30.0%
TGTTTCGTGAGGAAATAATT+TGG - chr6_3:97866324-97866343 None:intergenic 30.0%
AAACTTACCTATCACTATCA+TGG + chr6_3:97866355-97866374 Msa0967780:intron 30.0%
!!! GCATGACTTTTTTAGTTGAA+TGG + chr6_3:97866506-97866525 Msa0967780:intron 30.0%
TAATATGAGGAAGATTTGTG+CGG - chr6_3:97866804-97866823 None:intergenic 30.0%
TCGTGAATGTTTCATGAATA+TGG + chr6_3:97866971-97866990 Msa0967780:intron 30.0%
AGGTAAAAATGCAAAAGCTA+CGG - chr6_3:97867315-97867334 None:intergenic 30.0%
AAACCCGTTAAAGGAATTTA+AGG - chr6_3:97867335-97867354 None:intergenic 30.0%
GACATAACAAGGAATTTCAA+GGG + chr6_3:97867814-97867833 Msa0967780:intron 30.0%
GAATTTCAAGGGAAATATAG+TGG + chr6_3:97867825-97867844 Msa0967780:intron 30.0%
! TCTTTCTTTTCTTTCTTCCA+CGG - chr6_3:97867857-97867876 None:intergenic 30.0%
ACAAGTGATTGAGTAGTATT+AGG - chr6_3:97868195-97868214 None:intergenic 30.0%
AGAGATCAATAAGTCATTAG+AGG - chr6_3:97868230-97868249 None:intergenic 30.0%
AACCCCTAAATCAAATATTG+AGG + chr6_3:97868325-97868344 Msa0967780:intron 30.0%
ACCCCTAAATCAAATATTGA+GGG + chr6_3:97868326-97868345 Msa0967780:intron 30.0%
! TCCCTCAATATTTGATTTAG+GGG - chr6_3:97868330-97868349 None:intergenic 30.0%
! GTCCCTCAATATTTGATTTA+GGG - chr6_3:97868331-97868350 None:intergenic 30.0%
! AGTCCCTCAATATTTGATTT+AGG - chr6_3:97868332-97868351 None:intergenic 30.0%
!!! TGATTGAAGCATTGCTTTTA+TGG + chr6_3:97868486-97868505 Msa0967780:intron 30.0%
TTATTGCTAATGGTATGTAG+GGG + chr6_3:97868547-97868566 Msa0967780:intron 30.0%
TTTGTGAAGTTCACTGTATT+AGG + chr6_3:97868596-97868615 Msa0967780:CDS 30.0%
ACAACTGCAAATGCAATTTA+AGG + chr6_3:97869036-97869055 Msa0967780:intron 30.0%
TGTTCCTTCAGATTTCATAT+GGG - chr6_3:97869218-97869237 None:intergenic 30.0%
ATGTTCCTTCAGATTTCATA+TGG - chr6_3:97869219-97869238 None:intergenic 30.0%
ATGAAATCTGAAGGAACATA+TGG + chr6_3:97869220-97869239 Msa0967780:CDS 30.0%
AAACACCAAATGGAACATTA+GGG + chr6_3:97869329-97869348 Msa0967780:CDS 30.0%
! CTTCAGTATCGAATTTAGTG+AGG + chr6_3:97865207-97865226 Msa0967780:intron 35.0%
! TGAGGTACCAAAATCCTTAA+CGG + chr6_3:97865225-97865244 Msa0967780:intron 35.0%
! CAAAATCCTTAACGGCTTTT+CGG + chr6_3:97865233-97865252 Msa0967780:intron 35.0%
TTTCGGCCTTACAAAATGTT+AGG + chr6_3:97865250-97865269 Msa0967780:intron 35.0%
TTCGGCCTTACAAAATGTTA+GGG + chr6_3:97865251-97865270 Msa0967780:intron 35.0%
GAAATAGTGTTCCATCACAA+CGG + chr6_3:97865277-97865296 Msa0967780:intron 35.0%
AAATAGTGTTCCATCACAAC+GGG + chr6_3:97865278-97865297 Msa0967780:intron 35.0%
TATTCTATATCCCGTTGTGA+TGG - chr6_3:97865291-97865310 None:intergenic 35.0%
! CTTCCTTTGAAGAACTCATA+TGG + chr6_3:97865764-97865783 Msa0967780:intron 35.0%
ACACCATATGAGTTCTTCAA+AGG - chr6_3:97865770-97865789 None:intergenic 35.0%
GGTGTTTAATCTGGTAAGTA+TGG + chr6_3:97865785-97865804 Msa0967780:intron 35.0%
GTTTAATCTGGTAAGTATGG+TGG + chr6_3:97865788-97865807 Msa0967780:intron 35.0%
TGAAGACGTAAGCATGAAAT+AGG - chr6_3:97865957-97865976 None:intergenic 35.0%
TTATTTCCTCACGAAACATC+AGG + chr6_3:97866326-97866345 Msa0967780:intron 35.0%
AGTAGCGGTGAAAATAAGTT+CGG - chr6_3:97866626-97866645 None:intergenic 35.0%
! ACACACAAGTGTATTTGTTG+CGG + chr6_3:97866881-97866900 Msa0967780:intron 35.0%
TGAGCGGATCATGATAAAAA+GGG - chr6_3:97866911-97866930 None:intergenic 35.0%
ATGAGCGGATCATGATAAAA+AGG - chr6_3:97866912-97866931 None:intergenic 35.0%
CATTGGATTGAATACATGAG+CGG - chr6_3:97866927-97866946 None:intergenic 35.0%
! GAAGCCGTTAAATTTTGCAT+TGG - chr6_3:97866944-97866963 None:intergenic 35.0%
AATTATATTGACCTCCCTTG+AGG + chr6_3:97867149-97867168 Msa0967780:intron 35.0%
GTTTAATAAAACCTCAAGGG+AGG - chr6_3:97867163-97867182 None:intergenic 35.0%
CTAACACCGTTAACTTTGAA+GGG - chr6_3:97867226-97867245 None:intergenic 35.0%
ACTAACACCGTTAACTTTGA+AGG - chr6_3:97867227-97867246 None:intergenic 35.0%
TCATGTGCTAAGAAGTTAAG+AGG - chr6_3:97867292-97867311 None:intergenic 35.0%
!! GCTTACACAAACTTGTTGAA+AGG - chr6_3:97867421-97867440 None:intergenic 35.0%
TCATGTTATCTTATGCCCTA+AGG + chr6_3:97867605-97867624 Msa0967780:intron 35.0%
CATGTTATCTTATGCCCTAA+GGG + chr6_3:97867606-97867625 Msa0967780:intron 35.0%
!! ACACATTAACTTGTGCCTTA+AGG + chr6_3:97867745-97867764 Msa0967780:intron 35.0%
!! CACATTAACTTGTGCCTTAA+GGG + chr6_3:97867746-97867765 Msa0967780:intron 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG - chr6_3:97867763-97867782 None:intergenic 35.0%
GGACATAACAAGGAATTTCA+AGG + chr6_3:97867813-97867832 Msa0967780:intron 35.0%
TGCAAACAATGTAAACCAAG+AGG + chr6_3:97867941-97867960 Msa0967780:intron 35.0%
GCAAACAATGTAAACCAAGA+GGG + chr6_3:97867942-97867961 Msa0967780:intron 35.0%
CAAACAATGTAAACCAAGAG+GGG + chr6_3:97867943-97867962 Msa0967780:intron 35.0%
TATCACATTGAGGATTGAGT+AGG + chr6_3:97867973-97867992 Msa0967780:intron 35.0%
ATCACATTGAGGATTGAGTA+GGG + chr6_3:97867974-97867993 Msa0967780:intron 35.0%
!! TGTGGCTCTATCAATTTTGA+TGG - chr6_3:97868090-97868109 None:intergenic 35.0%
ACTGCCGAAAATGAAAATCA+TGG + chr6_3:97868404-97868423 Msa0967780:intron 35.0%
GTTAGAGGGTTAGATATTGA+TGG + chr6_3:97868569-97868588 Msa0967780:CDS 35.0%
CACTGTATTAGGAGTTTACT+TGG + chr6_3:97868607-97868626 Msa0967780:CDS 35.0%
AGGAGTTTACTTGGAAGAAA+AGG + chr6_3:97868616-97868635 Msa0967780:CDS 35.0%
GATATCTCGGTAGAAATCAA+GGG - chr6_3:97868699-97868718 None:intergenic 35.0%
TGATATCTCGGTAGAAATCA+AGG - chr6_3:97868700-97868719 None:intergenic 35.0%
TTCTACCGAGATATCATCAA+AGG + chr6_3:97868704-97868723 Msa0967780:CDS 35.0%
! TGGTACCTTTGATGATATCT+CGG - chr6_3:97868712-97868731 None:intergenic 35.0%
CTTGCACATATACTGTTGAA+TGG + chr6_3:97868923-97868942 Msa0967780:intron 35.0%
AGGTAGTGAATATGTGAGAA+AGG + chr6_3:97869174-97869193 Msa0967780:CDS 35.0%
ATTGCCCATATGAAATCTGA+AGG + chr6_3:97869211-97869230 Msa0967780:CDS 35.0%
AGAACTTAGAGAAGCCTTTA+AGG + chr6_3:97869267-97869286 Msa0967780:CDS 35.0%
!!! AAGGTTCAATTTTTTCCACC+AGG + chr6_3:97869286-97869305 Msa0967780:CDS 35.0%
!!! AGGTTCAATTTTTTCCACCA+GGG + chr6_3:97869287-97869306 Msa0967780:CDS 35.0%
TTCTTCAGACAAACACCAAA+TGG + chr6_3:97869319-97869338 Msa0967780:CDS 35.0%
CAAACACCAAATGGAACATT+AGG + chr6_3:97869328-97869347 Msa0967780:CDS 35.0%
AACACCAAATGGAACATTAG+GGG + chr6_3:97869330-97869349 Msa0967780:CDS 35.0%
! TTCAGGTATTGTCTCATCTT+TGG - chr6_3:97869457-97869476 None:intergenic 35.0%
ATAACAGCATACTCATGTTC+AGG - chr6_3:97869474-97869493 None:intergenic 35.0%
! TATAAACAACAAGCCGCTTT+CGG + chr6_3:97869491-97869510 Msa0967780:CDS 35.0%
AAGATTGACGACTTCAACAT+TGG + chr6_3:97869600-97869619 Msa0967780:CDS 35.0%
GGTGGAGTTCATTGAATTTC+CGG + chr6_3:97865005-97865024 Msa0967780:CDS 40.0%
!! AAATAGGACTTGGTGGATGA+TGG - chr6_3:97865045-97865064 None:intergenic 40.0%
TGACAGAATTTATGTGCGTC+GGG - chr6_3:97865178-97865197 None:intergenic 40.0%
GTGACAGAATTTATGTGCGT+CGG - chr6_3:97865179-97865198 None:intergenic 40.0%
! CGAAAAGCCGTTAAGGATTT+TGG - chr6_3:97865235-97865254 None:intergenic 40.0%
GCCTTACAAAATGTTAGGGA+GGG + chr6_3:97865255-97865274 Msa0967780:intron 40.0%
! TCCCTCCCTAACATTTTGTA+AGG - chr6_3:97865259-97865278 None:intergenic 40.0%
! AGAGGGAGTCAGTGAATTTT+AGG - chr6_3:97865661-97865680 None:intergenic 40.0%
! CACACAAGTGTATTTGTTGC+GGG + chr6_3:97866882-97866901 Msa0967780:intron 40.0%
GAGCGGATCATGATAAAAAG+GGG - chr6_3:97866910-97866929 None:intergenic 40.0%
TCACCTCCCTTCAAAGTTAA+CGG + chr6_3:97867217-97867236 Msa0967780:intron 40.0%
! ACGTAATGGAAACCCGTTAA+AGG - chr6_3:97867344-97867363 None:intergenic 40.0%
AGAGGGGAAATGAATTCGTT+TGG - chr6_3:97867473-97867492 None:intergenic 40.0%
GCAAAACTATGGTACTAGAG+GGG - chr6_3:97867489-97867508 None:intergenic 40.0%
GGCAAAACTATGGTACTAGA+GGG - chr6_3:97867490-97867509 None:intergenic 40.0%
TGGCAAAACTATGGTACTAG+AGG - chr6_3:97867491-97867510 None:intergenic 40.0%
!! CAAAGTGTTGTCACTACAGA+AGG - chr6_3:97867521-97867540 None:intergenic 40.0%
CTTCTGTAGTGACAACACTT+TGG + chr6_3:97867519-97867538 Msa0967780:intron 40.0%
TTGCTTAACATGTGCCCTTA+GGG - chr6_3:97867623-97867642 None:intergenic 40.0%
! TTCAAGGGAAATATAGTGGG+TGG + chr6_3:97867829-97867848 Msa0967780:intron 40.0%
! TGCTGCCGTTTCAAAAATTG+AGG + chr6_3:97867882-97867901 Msa0967780:intron 40.0%
TCACATTGAGGATTGAGTAG+GGG + chr6_3:97867975-97867994 Msa0967780:intron 40.0%
! AATTGCATTGACCTCCCTTA+AGG - chr6_3:97868053-97868072 None:intergenic 40.0%
TAATGGTATGTAGGGGTTAG+AGG + chr6_3:97868554-97868573 Msa0967780:intron 40.0%
AATGGTATGTAGGGGTTAGA+GGG + chr6_3:97868555-97868574 Msa0967780:intron 40.0%
TAGCATCACTTACTCCTAAG+TGG + chr6_3:97868642-97868661 Msa0967780:CDS 40.0%
ATCACTTACTCCTAAGTGGA+AGG + chr6_3:97868646-97868665 Msa0967780:CDS 40.0%
TCACTTACTCCTAAGTGGAA+GGG + chr6_3:97868647-97868666 Msa0967780:CDS 40.0%
ACAAAGGTGAGAACACTAGA+AGG + chr6_3:97869154-97869173 Msa0967780:CDS 40.0%
GGCTTCTCTAAGTTCTTGAA+TGG - chr6_3:97869263-97869282 None:intergenic 40.0%
!!! GGTTCAATTTTTTCCACCAG+GGG + chr6_3:97869288-97869307 Msa0967780:CDS 40.0%
CTAACCCCTAATGTTCCATT+TGG - chr6_3:97869337-97869356 None:intergenic 40.0%
ATCCATGATCACTGGAGTGA+AGG + chr6_3:97864984-97865003 Msa0967780:CDS 45.0%
GTTCATTGAATTTCCGGCAG+TGG + chr6_3:97865011-97865030 Msa0967780:CDS 45.0%
TCCACCAAGTCCTATTTCCT+TGG + chr6_3:97865048-97865067 Msa0967780:CDS 45.0%
ACCAAGGAAATAGGACTTGG+TGG - chr6_3:97865052-97865071 None:intergenic 45.0%
ACCAAGTCCTATTTCCTTGG+TGG + chr6_3:97865051-97865070 Msa0967780:CDS 45.0%
ACCACCAAGGAAATAGGACT+TGG - chr6_3:97865055-97865074 None:intergenic 45.0%
AAGAAATACCTGCACCACCA+AGG - chr6_3:97865068-97865087 None:intergenic 45.0%
GACAGAATTTATGTGCGTCG+GGG - chr6_3:97865177-97865196 None:intergenic 45.0%
GGCCTTACAAAATGTTAGGG+AGG + chr6_3:97865254-97865273 Msa0967780:intron 45.0%
! CCACACACCATGATAGTGAT+AGG - chr6_3:97866365-97866384 None:intergenic 45.0%
CCTATCACTATCATGGTGTG+TGG + chr6_3:97866362-97866381 Msa0967780:intron 45.0%
!!! TTGTGCGGTGCTACAGTTTT+GGG - chr6_3:97866789-97866808 None:intergenic 45.0%
!!! TTTGTGCGGTGCTACAGTTT+TGG - chr6_3:97866790-97866809 None:intergenic 45.0%
! ACACCGTTAACTTTGAAGGG+AGG - chr6_3:97867223-97867242 None:intergenic 45.0%
GTTGCTTAACATGTGCCCTT+AGG - chr6_3:97867624-97867643 None:intergenic 45.0%
!! AAATATAGTGGGTGGAACCG+TGG + chr6_3:97867837-97867856 Msa0967780:intron 45.0%
ACAATGTAAACCAAGAGGGG+AGG + chr6_3:97867946-97867965 Msa0967780:intron 45.0%
!! GGGAGGTGTTTATCACATTG+AGG + chr6_3:97867963-97867982 Msa0967780:intron 45.0%
CCACTGCATATGCACTTATG+TGG - chr6_3:97868108-97868127 None:intergenic 45.0%
CCACATAAGTGCATATGCAG+TGG + chr6_3:97868105-97868124 Msa0967780:intron 45.0%
AGGGATTCAAAGAGCTGAGA+TGG - chr6_3:97868680-97868699 None:intergenic 45.0%
AACAGGAATTTCTCCGGTCA+TGG - chr6_3:97869532-97869551 None:intergenic 45.0%
AGGCGAAACAGGAATTTCTC+CGG - chr6_3:97869538-97869557 None:intergenic 45.0%
TCTTTCAAAGCAGGCGAAAC+AGG - chr6_3:97869549-97869568 None:intergenic 45.0%
!! GCCTGCTTTGAAAGAGAGTT+TGG + chr6_3:97869554-97869573 Msa0967780:CDS 45.0%
GCCAAACTCTCTTTCAAAGC+AGG - chr6_3:97869558-97869577 None:intergenic 45.0%
!! TAAAAATATATAATTGAAAT+AGG - chr6_3:97866086-97866105 None:intergenic 5.0%
!!! TTTATTTTTTAAAAAAAACA+TGG + chr6_3:97866561-97866580 Msa0967780:intron 5.0%
!! ATAATAATAATAAAAAAAAG+AGG + chr6_3:97867792-97867811 Msa0967780:intron 5.0%
!!! GATTTTTTTATTTTTTTTTT+AGG - chr6_3:97868153-97868172 None:intergenic 5.0%
!! AAAAAATAAAACAAATTATT+AGG - chr6_3:97868762-97868781 None:intergenic 5.0%
CACCTTCACTCCAGTGATCA+TGG - chr6_3:97864989-97865008 None:intergenic 50.0%
CATGATCACTGGAGTGAAGG+TGG + chr6_3:97864987-97865006 Msa0967780:CDS 50.0%
!! TAGGACTTGGTGGATGATGG+AGG - chr6_3:97865042-97865061 None:intergenic 50.0%
!! TCCTATTTCCTTGGTGGTGC+AGG + chr6_3:97865057-97865076 Msa0967780:CDS 50.0%
ACCTGCACCACCAAGGAAAT+AGG - chr6_3:97865061-97865080 None:intergenic 50.0%
GTAAGGCCGAAAAGCCGTTA+AGG - chr6_3:97865242-97865261 None:intergenic 50.0%
TCGAGTCCTGATGTTTCGTG+AGG - chr6_3:97866335-97866354 None:intergenic 50.0%
TACTCTCCTGAGAGAGGTTG+TGG - chr6_3:97866854-97866873 None:intergenic 50.0%
TCGTGATACTCTCCTGAGAG+AGG - chr6_3:97866860-97866879 None:intergenic 50.0%
GGCGCATGATGGCAAAACTA+TGG - chr6_3:97867500-97867519 None:intergenic 50.0%
! TCACTACAGAAGGCGCATGA+TGG - chr6_3:97867511-97867530 None:intergenic 50.0%
GTGATAAACACCTCCCCTCT+TGG - chr6_3:97867959-97867978 None:intergenic 50.0%
CATTGAGGATTGAGTAGGGG+AGG + chr6_3:97867978-97867997 Msa0967780:intron 50.0%
!!! CAATTTTTTCCACCAGGGGC+TGG + chr6_3:97869292-97869311 Msa0967780:CDS 50.0%
! AAACAACAAGCCGCTTTCGG+AGG + chr6_3:97869494-97869513 Msa0967780:CDS 50.0%
GCAGCAGCATCCATGATCAC+TGG + chr6_3:97864976-97864995 Msa0967780:CDS 55.0%
ATGTCGCCACAACCTCTCTC+AGG + chr6_3:97866845-97866864 Msa0967780:intron 55.0%
GGAGTCTTGCCCTTCCACTT+AGG - chr6_3:97868659-97868678 None:intergenic 55.0%
AAGAAAACACCAGCCCCTGG+TGG - chr6_3:97869304-97869323 None:intergenic 55.0%
CTGAAGAAAACACCAGCCCC+TGG - chr6_3:97869307-97869326 None:intergenic 55.0%
TCCAACACTGCCTCCGAAAG+CGG - chr6_3:97869507-97869526 None:intergenic 55.0%
! GCAGTGTTGGAGACCATGAC+CGG + chr6_3:97869516-97869535 Msa0967780:CDS 55.0%
!! GATGGAGGTGTCACCACTGC+CGG - chr6_3:97865027-97865046 None:intergenic 60.0%
! GCCGCTTTCGGAGGCAGTGT+TGG + chr6_3:97869503-97869522 Msa0967780:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 97864967 97869629 97864967 ID=Msa0967780;Name=Msa0967780
chr6_3 mRNA 97864967 97869629 97864967 ID=Msa0967780-mRNA-1;Parent=Msa0967780;Name=Msa0967780-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|4|0|226
chr6_3 exon 97864967 97865078 97864967 ID=Msa0967780-mRNA-1:exon:18227;Parent=Msa0967780-mRNA-1
chr6_3 exon 97868567 97868725 97868567 ID=Msa0967780-mRNA-1:exon:18228;Parent=Msa0967780-mRNA-1
chr6_3 exon 97869128 97869351 97869128 ID=Msa0967780-mRNA-1:exon:18229;Parent=Msa0967780-mRNA-1
chr6_3 exon 97869444 97869629 97869444 ID=Msa0967780-mRNA-1:exon:18230;Parent=Msa0967780-mRNA-1
chr6_3 CDS 97864967 97865078 97864967 ID=Msa0967780-mRNA-1:cds;Parent=Msa0967780-mRNA-1
chr6_3 CDS 97868567 97868725 97868567 ID=Msa0967780-mRNA-1:cds;Parent=Msa0967780-mRNA-1
chr6_3 CDS 97869128 97869351 97869128 ID=Msa0967780-mRNA-1:cds;Parent=Msa0967780-mRNA-1
chr6_3 CDS 97869444 97869629 97869444 ID=Msa0967780-mRNA-1:cds;Parent=Msa0967780-mRNA-1
Gene Sequence

>Msa0967780

ATGGCAAAGGCAGCAGCATCCATGATCACTGGAGTGAAGGTGGAGTTCATTGAATTTCCGGCAGTGGTGACACCTCCATCATCCACCAAGTCCTATTTCCTTGGTGGTGCAGGGGTTAGAGGGTTAGATATTGATGGAGAGTTTGTGAAGTTCACTGTATTAGGAGTTTACTTGGAAGAAAAGGCTATAGCATCACTTACTCCTAAGTGGAAGGGCAAGACTCCATCTCAGCTCTTTGAATCCCTTGATTTCTACCGAGATATCATCAAAGGTCCCTTTGAGAAATTTATTCGATGTACAAAGGTGAGAACACTAGAAGGTAGTGAATATGTGAGAAAGGTATCAGAAAATTGCATTGCCCATATGAAATCTGAAGGAACATATGGCGATGCAGAAGAAAAAGCCATTCAAGAACTTAGAGAAGCCTTTAAGGTTCAATTTTTTCCACCAGGGGCTGGTGTTTTCTTCAGACAAACACCAAATGGAACATTAGGGCTTAGATTCTCCAAAGATGAGACAATACCTGAACATGAGTATGCTGTTATAAACAACAAGCCGCTTTCGGAGGCAGTGTTGGAGACCATGACCGGAGAAATTCCTGTTTCGCCTGCTTTGAAAGAGAGTTTGGCTACAAGATTTTGTGAGTTTATGAAGATTGACGACTTCAACATTGGAAACTGA

Protein sequence

>Msa0967780

MAKAAASMITGVKVEFIEFPAVVTPPSSTKSYFLGGAGVRGLDIDGEFVKFTVLGVYLEEKAIASLTPKWKGKTPSQLFESLDFYRDIIKGPFEKFIRCTKVRTLEGSEYVRKVSENCIAHMKSEGTYGDAEEKAIQELREAFKVQFFPPGAGVFFRQTPNGTLGLRFSKDETIPEHEYAVINNKPLSEAVLETMTGEIPVSPALKESLATRFCEFMKIDDFNIGN*