AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0334320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0334320 MtrunA17_Chr2g0317871 96.144 389 15 0 1 389 1 389 0.0 744
Msa0334320 MtrunA17_Chr2g0317881 81.538 390 66 3 1 389 1 385 0.0 607
Msa0334320 MtrunA17_Chr2g0281871 45.500 400 182 8 8 387 10 393 1.40e-111 332
Msa0334320 MtrunA17_Chr7g0249131 28.037 428 227 14 1 379 1 396 7.21e-31 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0334320 AT4G27460.1 50.877 399 173 11 1 387 1 388 2.56e-112 334
Msa0334320 AT5G53750.1 49.639 415 171 12 1 387 1 405 2.49e-108 324
Msa0334320 AT1G65320.1 26.559 433 230 14 1 379 1 399 1.83e-28 115

Find 112 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGAAAGTTTCGTCAGTATT+TGG 0.149651 2_4:+52652461 Msa0334320:CDS
ATGCATTTCTGTCATGAATA+AGG 0.230254 2_4:+52654728 Msa0334320:three_prime_UTR
AAGGTTGAAGGAAAAGAATT+TGG 0.316598 2_4:+52654207 Msa0334320:CDS
CGATGACCTTGCATACTTTC+CGG 0.330667 2_4:-52654332 None:intergenic
GTGTCCTTCCAAAGCTCTTA+AGG 0.331448 2_4:+52652579 Msa0334320:CDS
CACAGCAATCAAAGAGCTCT+TGG 0.367612 2_4:-52654404 None:intergenic
AATTGAAGCCTTAAGAGCTT+TGG 0.367682 2_4:-52652587 None:intergenic
AACTGTGACCACTCTGAATT+CGG 0.379187 2_4:+52652484 Msa0334320:CDS
GCCCTCCAGAGGATCTAGTT+AGG 0.395318 2_4:+52654173 Msa0334320:CDS
CTCTACATTCCTCACATACT+TGG 0.414784 2_4:-52654365 None:intergenic
GAGGATGATTGGAGCTTAGT+TGG 0.417326 2_4:+52654472 Msa0334320:CDS
TGTGGGTTATTGAGGATGAT+TGG 0.421312 2_4:+52654461 Msa0334320:CDS
CATGACAGAAATGCATCAAA+GGG 0.427352 2_4:-52654721 None:intergenic
GCCATCACAACTTTGTCTGC+AGG 0.430978 2_4:+52654121 Msa0334320:CDS
CTTCAACAGCAGAAGACGCC+TGG 0.435308 2_4:-52653982 None:intergenic
AGGTTCTTGCTTGGTTCCAT+TGG 0.451234 2_4:+52653878 Msa0334320:CDS
ATGTGTTGGGAAAATTTGTA+TGG 0.452481 2_4:+52652516 Msa0334320:CDS
TAGTGAAGCATGAAACTTGT+TGG 0.454029 2_4:+52654596 Msa0334320:three_prime_UTR
TAATAGAGTGAATTACTTGT+GGG 0.472091 2_4:+52654444 Msa0334320:CDS
TCGGTCAATGTCAATGTGTT+GGG 0.473950 2_4:+52652503 Msa0334320:CDS
CTCCATTGATTACTCTTCCC+AGG 0.476252 2_4:+52653964 Msa0334320:CDS
GGTTGTAAAGGCAAGGTTGA+AGG 0.477069 2_4:+52654195 Msa0334320:CDS
ATCAACCTTATTCAAAACAT+TGG 0.479230 2_4:-52652611 None:intergenic
GCCATTGATCTCATACTTGA+GGG 0.480304 2_4:+52653719 Msa0334320:CDS
GAATTACTTGTGGGTTATTG+AGG 0.486011 2_4:+52654453 Msa0334320:CDS
AACTTTCGCCGCCGGAGCTA+CGG 0.487382 2_4:-52652447 None:intergenic
GATGTGATCAGGTTCTTGCT+TGG 0.488754 2_4:+52653869 Msa0334320:CDS
GCGAGGAGTTTGACACGGTC+CGG 0.494146 2_4:+52654313 Msa0334320:CDS
ATTGAAGTCCTCCGTAGCTC+CGG 0.495539 2_4:+52652436 Msa0334320:CDS
TTCATCTGATGAGGACAGTC+CGG 0.496147 2_4:+52654291 Msa0334320:CDS
CCCTCCAGAGGATCTAGTTA+GGG 0.498391 2_4:+52654174 Msa0334320:CDS
GCAAAGATTGAACGCGGCGG+CGG 0.501363 2_4:-52652317 None:intergenic
AACAGAAAGACCACATTCAC+AGG 0.502709 2_4:-52654619 None:intergenic
AGACGATCGATGGATTGTGC+AGG 0.510025 2_4:-52653917 None:intergenic
GTTGCAATTGTCGACGGTGA+TGG 0.521762 2_4:+52654037 Msa0334320:CDS
AGGGACAAGAACTATGATAC+AGG 0.522380 2_4:-52654769 None:intergenic
GGATCTAGTTAGGGTTGTAA+AGG 0.524022 2_4:+52654183 Msa0334320:CDS
CCATCACAACTTTGTCTGCA+GGG 0.524200 2_4:+52654122 Msa0334320:CDS
ACAGCAATCAAAGAGCTCTT+GGG 0.525945 2_4:-52654403 None:intergenic
AATAAATGGTACCTAGATGA+AGG 0.528220 2_4:-52652655 None:intergenic
TTGTGTGAGGGACTTTGAGA+TGG 0.531894 2_4:-52654005 None:intergenic
CCCCTCAAGTATGAGATCAA+TGG 0.534194 2_4:-52653720 None:intergenic
CTAATAGAGTGAATTACTTG+TGG 0.535417 2_4:+52654443 Msa0334320:CDS
ACAACCCTAACTAGATCCTC+TGG 0.535562 2_4:-52654178 None:intergenic
TCATGACAGAAATGCATCAA+AGG 0.537397 2_4:-52654722 None:intergenic
TTCATCTAGAACCTTCATCT+AGG 0.539213 2_4:+52652644 Msa0334320:CDS
TGCCATTGATCTCATACTTG+AGG 0.539564 2_4:+52653718 Msa0334320:CDS
TTGCAATTGTCGACGGTGAT+GGG 0.542443 2_4:+52654038 Msa0334320:CDS
GACGGTGATGGGACATTCAT+CGG 0.542508 2_4:+52654049 Msa0334320:CDS
TTCGGTCAATGTCAATGTGT+TGG 0.546600 2_4:+52652502 Msa0334320:CDS
CCCTGCAGACAAAGTTGTGA+TGG 0.549793 2_4:-52654122 None:intergenic
CATCACAACTTTGTCTGCAG+GGG 0.550293 2_4:+52654123 Msa0334320:CDS
TAACACAAGAGGATGTGATC+AGG 0.550433 2_4:+52653858 Msa0334320:CDS
GATAATATTGAGACGATCGA+TGG 0.553025 2_4:-52653927 None:intergenic
TGCAGTGTGGCTGATGAGGC+CGG 0.553949 2_4:+52654651 Msa0334320:three_prime_UTR
CGCCGCGTTCAATCTTTGCA+TGG 0.555324 2_4:+52652321 Msa0334320:exon
GAGTGCACTGAAGCGGCCAA+TGG 0.559548 2_4:-52653894 None:intergenic
ACAACGGTGTTGAGTTCTGT+TGG 0.560590 2_4:+52653834 Msa0334320:CDS
CGCCTGGGAAGAGTAATCAA+TGG 0.562410 2_4:-52653966 None:intergenic
ATCACAACATGCAAGTGTGA+AGG 0.567692 2_4:-52654083 None:intergenic
AACTTGTTGGCCTGTGAATG+TGG 0.567954 2_4:+52654609 Msa0334320:three_prime_UTR
TAGTTAGGGTTGTAAAGGCA+AGG 0.569328 2_4:+52654188 Msa0334320:CDS
GAGTTATCTGATCTCTGTCT+CGG 0.571057 2_4:+52652364 Msa0334320:CDS
CAACAGAAGTTTGTTGTGTG+AGG 0.577183 2_4:-52654018 None:intergenic
ATCCTCCTCTTCATCTGATG+AGG 0.578040 2_4:+52654282 Msa0334320:CDS
GACCGTGTCAAACTCCTCGC+CGG 0.578167 2_4:-52654310 None:intergenic
TGCAAGGTCATCGAGCTACT+CGG 0.582724 2_4:+52654342 Msa0334320:CDS
ATCACAACTTTGTCTGCAGG+GGG 0.584206 2_4:+52654124 Msa0334320:CDS
TTTCGCCGCCGGAGCTACGG+AGG 0.585312 2_4:-52652444 None:intergenic
TCGTCTCAATATTATCAGCT+CGG 0.585428 2_4:+52653934 Msa0334320:CDS
GTTCTGTTGGTTAACACAAG+AGG 0.588395 2_4:+52653847 Msa0334320:CDS
TTCAACAGCAGAAGACGCCT+GGG 0.592455 2_4:-52653981 None:intergenic
GTGCAGGGAGTGCACTGAAG+CGG 0.593463 2_4:-52653901 None:intergenic
GACTTCAATTGCCTCAGCGA+CGG 0.595693 2_4:-52652422 None:intergenic
GTCCTCATCAGATGAAGAGG+AGG 0.596841 2_4:-52654284 None:intergenic
TCACAACATGCAAGTGTGAA+GGG 0.596883 2_4:-52654082 None:intergenic
ACTGTCCTCATCAGATGAAG+AGG 0.604105 2_4:-52654287 None:intergenic
GACGATCGATGGATTGTGCA+GGG 0.604203 2_4:-52653916 None:intergenic
GAAGTCCTCCGTAGCTCCGG+CGG 0.605794 2_4:+52652439 Msa0334320:CDS
TGCAGACAAAGTTGTGATGG+CGG 0.609998 2_4:-52654119 None:intergenic
AACAGAAGTTTGTTGTGTGA+GGG 0.614439 2_4:-52654017 None:intergenic
CACGGTCCGGAAAGTATGCA+AGG 0.614793 2_4:+52654326 Msa0334320:CDS
GTTGAAGTCGCTTTCAACGT+CGG 0.615025 2_4:+52652396 Msa0334320:CDS
AGGGCGACCACAGTCAATGT+AGG 0.615124 2_4:-52654155 None:intergenic
GTTGAAAGCGACTTCAACGG+CGG 0.616613 2_4:-52652391 None:intergenic
GAAGCCTTAAGAGCTTTGGA+AGG 0.616878 2_4:-52652583 None:intergenic
TGACTGTGGTCGCCCTCCAG+AGG 0.619657 2_4:+52654162 Msa0334320:CDS
ATGTTGTGATGAGACGGTTG+CGG 0.621625 2_4:+52654096 Msa0334320:CDS
ACTTCTGTTGCAATTGTCGA+CGG 0.622534 2_4:+52654031 Msa0334320:CDS
ACTGACGAAACTTTCGCCGC+CGG 0.628683 2_4:-52652455 None:intergenic
AACAGAACTCAACACCGTTG+TGG 0.629524 2_4:-52653832 None:intergenic
TAACTGCAGTGTGGCTGATG+AGG 0.632164 2_4:+52654647 Msa0334320:three_prime_UTR
CGGCGGAGAGAATCTCGAAA+CGG 0.635033 2_4:-52652300 None:intergenic
GACGTTGAAAGCGACTTCAA+CGG 0.641361 2_4:-52652394 None:intergenic
ACCCTAACTAGATCCTCTGG+AGG 0.646675 2_4:-52654175 None:intergenic
AGAGGAGGATGACATATCAC+CGG 0.649223 2_4:-52654269 None:intergenic
GCTACTCGGCCAAGTATGTG+AGG 0.650705 2_4:+52654356 Msa0334320:CDS
CATTGATCTCATACTTGAGG+GGG 0.653452 2_4:+52653721 Msa0334320:CDS
CAAGTATGTGAGGAATGTAG+AGG 0.658949 2_4:+52654366 Msa0334320:CDS
ACTTGCATGTTGTGATGAGA+CGG 0.665678 2_4:+52654090 Msa0334320:CDS
GACATTGACCGAATTCAGAG+TGG 0.672174 2_4:-52652492 None:intergenic
AACGTCGGCTACCGTCGCTG+AGG 0.672712 2_4:+52652411 Msa0334320:CDS
CCATTGATCTCATACTTGAG+GGG 0.673886 2_4:+52653720 Msa0334320:CDS
CCCTAACTAGATCCTCTGGA+GGG 0.680964 2_4:-52654174 None:intergenic
TTGATGGCCTACATTGACTG+TGG 0.683351 2_4:+52654148 Msa0334320:CDS
TTCCATGCAAAGATTGAACG+CGG 0.705700 2_4:-52652323 None:intergenic
CATGCAAAGATTGAACGCGG+CGG 0.705845 2_4:-52652320 None:intergenic
ATGACAGAAATGCATCAAAG+GGG 0.705982 2_4:-52654720 None:intergenic
GTCCGGCGAGGAGTTTGACA+CGG 0.708960 2_4:+52654308 Msa0334320:CDS
TTAACAATCAACAGCCACAA+CGG 0.709558 2_4:+52653818 Msa0334320:CDS
TGTTATGAATAACTGCAGTG+TGG 0.714149 2_4:+52654638 Msa0334320:three_prime_UTR
CTGATGAGGACAGTCCGGCG+AGG 0.730013 2_4:+52654296 Msa0334320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATGAATAAACAAATAAA+TGG - chr2_4:52652672-52652691 None:intergenic 10.0%
!!! TATAATGTATTTGATTTACA+TGG + chr2_4:52653318-52653337 Msa0334320:intron 15.0%
!!! AAACTTGAAATTGTATTTTT+TGG + chr2_4:52653522-52653541 Msa0334320:intron 15.0%
!!! AACTTGAAATTGTATTTTTT+GGG + chr2_4:52653523-52653542 Msa0334320:intron 15.0%
!!! AATTTCCAATGTTTTGAATA+AGG + chr2_4:52652606-52652625 Msa0334320:CDS 20.0%
!!! TAAGACATTCTTTTTTTGTT+TGG - chr2_4:52652861-52652880 None:intergenic 20.0%
!!! AATAATGTTTGTCATTGATT+TGG + chr2_4:52652897-52652916 Msa0334320:intron 20.0%
!! TTGTTTACACTCAAAATTTA+TGG + chr2_4:52653098-52653117 Msa0334320:intron 20.0%
!!! AATGTAAAATGATTTGTGTT+TGG - chr2_4:52653144-52653163 None:intergenic 20.0%
!! ATGAAAATCCTTAAAAAAAG+AGG + chr2_4:52653442-52653461 Msa0334320:intron 20.0%
!!! TACATATTCCTCTTTTTTTA+AGG - chr2_4:52653453-52653472 None:intergenic 20.0%
!!! ACTTGAAATTGTATTTTTTG+GGG + chr2_4:52653524-52653543 Msa0334320:intron 20.0%
!!! TACTTTTTCTAATATCTTGA+AGG + chr2_4:52654501-52654520 Msa0334320:CDS 20.0%
!!! TTTTCAAAGAAAACATTTGA+GGG - chr2_4:52654791-52654810 None:intergenic 20.0%
!!! ATTTTCAAAGAAAACATTTG+AGG - chr2_4:52654792-52654811 None:intergenic 20.0%
! ATCAACCTTATTCAAAACAT+TGG - chr2_4:52652614-52652633 None:intergenic 25.0%
!!! AATGTTTTGAATAAGGTTGA+TGG + chr2_4:52652613-52652632 Msa0334320:CDS 25.0%
! ACAATGCATAAAAATATGCA+AGG + chr2_4:52652810-52652829 Msa0334320:intron 25.0%
!!! ATTCTTTTTTTGTTTGGTAG+TGG - chr2_4:52652855-52652874 None:intergenic 25.0%
!!! TGTCATTGATTTGGATTAAA+CGG + chr2_4:52652906-52652925 Msa0334320:intron 25.0%
! ATACACCTCTATAATCAATT+TGG - chr2_4:52652933-52652952 None:intergenic 25.0%
!! AATTGATTCTATTGAGTGTT+TGG + chr2_4:52653075-52653094 Msa0334320:intron 25.0%
! TCAACAATTAAGTGTATGTT+TGG - chr2_4:52653202-52653221 None:intergenic 25.0%
!! TGAATTTGAAATTTGCTTTC+AGG + chr2_4:52653264-52653283 Msa0334320:intron 25.0%
!!! TGATATTTGTTGTAGTTTTG+AGG + chr2_4:52653291-52653310 Msa0334320:intron 25.0%
!!! GATATTTGTTGTAGTTTTGA+GGG + chr2_4:52653292-52653311 Msa0334320:intron 25.0%
! AAACTCATACTCAAAATCAA+GGG - chr2_4:52653361-52653380 None:intergenic 25.0%
! AAAACTCATACTCAAAATCA+AGG - chr2_4:52653362-52653381 None:intergenic 25.0%
! CATTTAGAAACATATGATTC+AGG - chr2_4:52653502-52653521 None:intergenic 25.0%
!!! CTTGAAATTGTATTTTTTGG+GGG + chr2_4:52653525-52653544 Msa0334320:intron 25.0%
!!! TTGAAATTGTATTTTTTGGG+GGG + chr2_4:52653526-52653545 Msa0334320:intron 25.0%
! TAACATCAAAATAACAAGGA+GGG - chr2_4:52653686-52653705 None:intergenic 25.0%
!!! ATTTTGATGTTACAGCTTAT+TGG + chr2_4:52653694-52653713 Msa0334320:intron 25.0%
! TAATAGAGTGAATTACTTGT+GGG + chr2_4:52654444-52654463 Msa0334320:CDS 25.0%
! ATAAAGCAAAAACAAAGATC+CGG - chr2_4:52654673-52654692 None:intergenic 25.0%
ATGTGTTGGGAAAATTTGTA+TGG + chr2_4:52652516-52652535 Msa0334320:CDS 30.0%
AATAAATGGTACCTAGATGA+AGG - chr2_4:52652658-52652677 None:intergenic 30.0%
GCATAAAAATATGCAAGGTT+CGG + chr2_4:52652815-52652834 Msa0334320:intron 30.0%
CATAAAAATATGCAAGGTTC+GGG + chr2_4:52652816-52652835 Msa0334320:intron 30.0%
ATAAAAATATGCAAGGTTCG+GGG + chr2_4:52652817-52652836 Msa0334320:intron 30.0%
GTAACATCAAAATAACAAGG+AGG - chr2_4:52653687-52653706 None:intergenic 30.0%
GCTGTAACATCAAAATAACA+AGG - chr2_4:52653690-52653709 None:intergenic 30.0%
!!! CCTTTTTTTGTCTGCAAAAT+TGG - chr2_4:52653764-52653783 None:intergenic 30.0%
! CCAATTTTGCAGACAAAAAA+AGG + chr2_4:52653761-52653780 Msa0334320:CDS 30.0%
! ATTTTGCAGACAAAAAAAGG+TGG + chr2_4:52653764-52653783 Msa0334320:CDS 30.0%
AAGGTTGAAGGAAAAGAATT+TGG + chr2_4:52654207-52654226 Msa0334320:CDS 30.0%
CTAATAGAGTGAATTACTTG+TGG + chr2_4:52654443-52654462 Msa0334320:CDS 30.0%
ATGCATTTCTGTCATGAATA+AGG + chr2_4:52654728-52654747 Msa0334320:three_prime_UTR 30.0%
AATTGAAGCCTTAAGAGCTT+TGG - chr2_4:52652590-52652609 None:intergenic 35.0%
! TTCATCTAGAACCTTCATCT+AGG + chr2_4:52652644-52652663 Msa0334320:CDS 35.0%
TCACAGCACGTAAATAATCT+TGG + chr2_4:52652726-52652745 Msa0334320:intron 35.0%
!!! TTTTTTTGTTTGGTAGTGGC+CGG - chr2_4:52652851-52652870 None:intergenic 35.0%
ACGGTCCAAATTGATTATAG+AGG + chr2_4:52652925-52652944 Msa0334320:intron 35.0%
!! TCTGATTTTGACATGTTGTC+AGG + chr2_4:52653031-52653050 Msa0334320:intron 35.0%
!! TAAGTGTATGTTTGGTTCTG+AGG - chr2_4:52653194-52653213 None:intergenic 35.0%
AAGTGTGGAATTGATTGACA+TGG + chr2_4:52653558-52653577 Msa0334320:intron 35.0%
TGGAATTGATTGACATGGAA+AGG + chr2_4:52653563-52653582 Msa0334320:intron 35.0%
GGAATTGATTGACATGGAAA+GGG + chr2_4:52653564-52653583 Msa0334320:intron 35.0%
GAATTGATTGACATGGAAAG+GGG + chr2_4:52653565-52653584 Msa0334320:intron 35.0%
TTAACAATCAACAGCCACAA+CGG + chr2_4:52653818-52653837 Msa0334320:CDS 35.0%
GATAATATTGAGACGATCGA+TGG - chr2_4:52653930-52653949 None:intergenic 35.0%
TCGTCTCAATATTATCAGCT+CGG + chr2_4:52653934-52653953 Msa0334320:CDS 35.0%
!! AACAGAAGTTTGTTGTGTGA+GGG - chr2_4:52654020-52654039 None:intergenic 35.0%
! GAATTACTTGTGGGTTATTG+AGG + chr2_4:52654453-52654472 Msa0334320:CDS 35.0%
TAGTGAAGCATGAAACTTGT+TGG + chr2_4:52654596-52654615 Msa0334320:three_prime_UTR 35.0%
TGTTATGAATAACTGCAGTG+TGG + chr2_4:52654638-52654657 Msa0334320:three_prime_UTR 35.0%
ATGACAGAAATGCATCAAAG+GGG - chr2_4:52654723-52654742 None:intergenic 35.0%
CATGACAGAAATGCATCAAA+GGG - chr2_4:52654724-52654743 None:intergenic 35.0%
TCATGACAGAAATGCATCAA+AGG - chr2_4:52654725-52654744 None:intergenic 35.0%
TTCCATGCAAAGATTGAACG+CGG - chr2_4:52652326-52652345 None:intergenic 40.0%
GAGTTATCTGATCTCTGTCT+CGG + chr2_4:52652364-52652383 Msa0334320:CDS 40.0%
GCGAAAGTTTCGTCAGTATT+TGG + chr2_4:52652461-52652480 Msa0334320:CDS 40.0%
AACTGTGACCACTCTGAATT+CGG + chr2_4:52652484-52652503 Msa0334320:CDS 40.0%
TTCGGTCAATGTCAATGTGT+TGG + chr2_4:52652502-52652521 Msa0334320:CDS 40.0%
TCGGTCAATGTCAATGTGTT+GGG + chr2_4:52652503-52652522 Msa0334320:CDS 40.0%
!!! TTTTTTGTTTGGTAGTGGCC+GGG - chr2_4:52652850-52652869 None:intergenic 40.0%
!! GATTTTGACATGTTGTCAGG+TGG + chr2_4:52653034-52653053 Msa0334320:intron 40.0%
TGCCATTGATCTCATACTTG+AGG + chr2_4:52653718-52653737 Msa0334320:CDS 40.0%
GCCATTGATCTCATACTTGA+GGG + chr2_4:52653719-52653738 Msa0334320:CDS 40.0%
CCATTGATCTCATACTTGAG+GGG + chr2_4:52653720-52653739 Msa0334320:CDS 40.0%
CATTGATCTCATACTTGAGG+GGG + chr2_4:52653721-52653740 Msa0334320:CDS 40.0%
CAAAAAAAGGTGGCCTTTCA+AGG + chr2_4:52653774-52653793 Msa0334320:CDS 40.0%
! GTTCTGTTGGTTAACACAAG+AGG + chr2_4:52653847-52653866 Msa0334320:CDS 40.0%
TAACACAAGAGGATGTGATC+AGG + chr2_4:52653858-52653877 Msa0334320:CDS 40.0%
!! CAACAGAAGTTTGTTGTGTG+AGG - chr2_4:52654021-52654040 None:intergenic 40.0%
ACTTCTGTTGCAATTGTCGA+CGG + chr2_4:52654031-52654050 Msa0334320:CDS 40.0%
TCACAACATGCAAGTGTGAA+GGG - chr2_4:52654085-52654104 None:intergenic 40.0%
ATCACAACATGCAAGTGTGA+AGG - chr2_4:52654086-52654105 None:intergenic 40.0%
ACTTGCATGTTGTGATGAGA+CGG + chr2_4:52654090-52654109 Msa0334320:CDS 40.0%
GGATCTAGTTAGGGTTGTAA+AGG + chr2_4:52654183-52654202 Msa0334320:CDS 40.0%
TAGTTAGGGTTGTAAAGGCA+AGG + chr2_4:52654188-52654207 Msa0334320:CDS 40.0%
!!! ACGCTTTTGACTTCTTTGAC+CGG + chr2_4:52654250-52654269 Msa0334320:CDS 40.0%
CTCTACATTCCTCACATACT+TGG - chr2_4:52654368-52654387 None:intergenic 40.0%
CAAGTATGTGAGGAATGTAG+AGG + chr2_4:52654366-52654385 Msa0334320:CDS 40.0%
ACAGCAATCAAAGAGCTCTT+GGG - chr2_4:52654406-52654425 None:intergenic 40.0%
! TGTGGGTTATTGAGGATGAT+TGG + chr2_4:52654461-52654480 Msa0334320:CDS 40.0%
AACAGAAAGACCACATTCAC+AGG - chr2_4:52654622-52654641 None:intergenic 40.0%
AGGGACAAGAACTATGATAC+AGG - chr2_4:52654772-52654791 None:intergenic 40.0%
GACGTTGAAAGCGACTTCAA+CGG - chr2_4:52652397-52652416 None:intergenic 45.0%
! GTTGAAGTCGCTTTCAACGT+CGG + chr2_4:52652396-52652415 Msa0334320:CDS 45.0%
GACATTGACCGAATTCAGAG+TGG - chr2_4:52652495-52652514 None:intergenic 45.0%
GTGTCCTTCCAAAGCTCTTA+AGG + chr2_4:52652579-52652598 Msa0334320:CDS 45.0%
!! GAAGCCTTAAGAGCTTTGGA+AGG - chr2_4:52652586-52652605 None:intergenic 45.0%
AACCAACTGAGCTAAGCTCA+CGG - chr2_4:52652788-52652807 None:intergenic 45.0%
!!! TTTTTGTTTGGTAGTGGCCG+GGG - chr2_4:52652849-52652868 None:intergenic 45.0%
TTGATTGACATGGAAAGGGG+TGG + chr2_4:52653568-52653587 Msa0334320:intron 45.0%
TGATTGACATGGAAAGGGGT+GGG + chr2_4:52653569-52653588 Msa0334320:intron 45.0%
CCCCTCAAGTATGAGATCAA+TGG - chr2_4:52653723-52653742 None:intergenic 45.0%
! GCTGCAGTTTTCTCCTTGAA+AGG - chr2_4:52653790-52653809 None:intergenic 45.0%
AACAGAACTCAACACCGTTG+TGG - chr2_4:52653835-52653854 None:intergenic 45.0%
! ACAACGGTGTTGAGTTCTGT+TGG + chr2_4:52653834-52653853 Msa0334320:CDS 45.0%
GATGTGATCAGGTTCTTGCT+TGG + chr2_4:52653869-52653888 Msa0334320:CDS 45.0%
AGGTTCTTGCTTGGTTCCAT+TGG + chr2_4:52653878-52653897 Msa0334320:CDS 45.0%
! CTCCATTGATTACTCTTCCC+AGG + chr2_4:52653964-52653983 Msa0334320:CDS 45.0%
! TTGTGTGAGGGACTTTGAGA+TGG - chr2_4:52654008-52654027 None:intergenic 45.0%
TTGCAATTGTCGACGGTGAT+GGG + chr2_4:52654038-52654057 Msa0334320:CDS 45.0%
ATGTTGTGATGAGACGGTTG+CGG + chr2_4:52654096-52654115 Msa0334320:CDS 45.0%
TGCAGACAAAGTTGTGATGG+CGG - chr2_4:52654122-52654141 None:intergenic 45.0%
CCATCACAACTTTGTCTGCA+GGG + chr2_4:52654122-52654141 Msa0334320:CDS 45.0%
CATCACAACTTTGTCTGCAG+GGG + chr2_4:52654123-52654142 Msa0334320:CDS 45.0%
ATCACAACTTTGTCTGCAGG+GGG + chr2_4:52654124-52654143 Msa0334320:CDS 45.0%
! TTGATGGCCTACATTGACTG+TGG + chr2_4:52654148-52654167 Msa0334320:CDS 45.0%
ACAACCCTAACTAGATCCTC+TGG - chr2_4:52654181-52654200 None:intergenic 45.0%
GGTTGTAAAGGCAAGGTTGA+AGG + chr2_4:52654195-52654214 Msa0334320:CDS 45.0%
AGAGGAGGATGACATATCAC+CGG - chr2_4:52654272-52654291 None:intergenic 45.0%
ATCCTCCTCTTCATCTGATG+AGG + chr2_4:52654282-52654301 Msa0334320:CDS 45.0%
ACTGTCCTCATCAGATGAAG+AGG - chr2_4:52654290-52654309 None:intergenic 45.0%
TTCATCTGATGAGGACAGTC+CGG + chr2_4:52654291-52654310 Msa0334320:CDS 45.0%
CGATGACCTTGCATACTTTC+CGG - chr2_4:52654335-52654354 None:intergenic 45.0%
CACAGCAATCAAAGAGCTCT+TGG - chr2_4:52654407-52654426 None:intergenic 45.0%
GAGGATGATTGGAGCTTAGT+TGG + chr2_4:52654472-52654491 Msa0334320:CDS 45.0%
!! AACTTGTTGGCCTGTGAATG+TGG + chr2_4:52654609-52654628 Msa0334320:three_prime_UTR 45.0%
CATGCAAAGATTGAACGCGG+CGG - chr2_4:52652323-52652342 None:intergenic 50.0%
GTTGAAAGCGACTTCAACGG+CGG - chr2_4:52652394-52652413 None:intergenic 50.0%
GACTTCAATTGCCTCAGCGA+CGG - chr2_4:52652425-52652444 None:intergenic 50.0%
ATTGAAGTCCTCCGTAGCTC+CGG + chr2_4:52652436-52652455 Msa0334320:CDS 50.0%
ACCAACTGAGCTAAGCTCAC+GGG - chr2_4:52652787-52652806 None:intergenic 50.0%
GTGAGCTTAGCTCAGTTGGT+TGG + chr2_4:52652787-52652806 Msa0334320:intron 50.0%
AAGGTTCGGGGTTTAAACCC+CGG + chr2_4:52652829-52652848 Msa0334320:intron 50.0%
!!! GGGGGGTAAGTTTTGAAGTG+TGG + chr2_4:52653543-52653562 Msa0334320:intron 50.0%
!! GACGATCGATGGATTGTGCA+GGG - chr2_4:52653919-52653938 None:intergenic 50.0%
!! AGACGATCGATGGATTGTGC+AGG - chr2_4:52653920-52653939 None:intergenic 50.0%
CGCCTGGGAAGAGTAATCAA+TGG - chr2_4:52653969-52653988 None:intergenic 50.0%
TTCAACAGCAGAAGACGCCT+GGG - chr2_4:52653984-52654003 None:intergenic 50.0%
GTTGCAATTGTCGACGGTGA+TGG + chr2_4:52654037-52654056 Msa0334320:CDS 50.0%
!! GACGGTGATGGGACATTCAT+CGG + chr2_4:52654049-52654068 Msa0334320:CDS 50.0%
GCCATCACAACTTTGTCTGC+AGG + chr2_4:52654121-52654140 Msa0334320:CDS 50.0%
CCCTGCAGACAAAGTTGTGA+TGG - chr2_4:52654125-52654144 None:intergenic 50.0%
CCCTAACTAGATCCTCTGGA+GGG - chr2_4:52654177-52654196 None:intergenic 50.0%
CCCTCCAGAGGATCTAGTTA+GGG + chr2_4:52654174-52654193 Msa0334320:CDS 50.0%
ACCCTAACTAGATCCTCTGG+AGG - chr2_4:52654178-52654197 None:intergenic 50.0%
GTCCTCATCAGATGAAGAGG+AGG - chr2_4:52654287-52654306 None:intergenic 50.0%
TGCAAGGTCATCGAGCTACT+CGG + chr2_4:52654342-52654361 Msa0334320:CDS 50.0%
TAACTGCAGTGTGGCTGATG+AGG + chr2_4:52654647-52654666 Msa0334320:three_prime_UTR 50.0%
CGGCGGAGAGAATCTCGAAA+CGG - chr2_4:52652303-52652322 None:intergenic 55.0%
CGCCGCGTTCAATCTTTGCA+TGG + chr2_4:52652321-52652340 Msa0334320:exon 55.0%
ACTGACGAAACTTTCGCCGC+CGG - chr2_4:52652458-52652477 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+GGG - chr2_4:52652786-52652805 None:intergenic 55.0%
CTTCAACAGCAGAAGACGCC+TGG - chr2_4:52653985-52654004 None:intergenic 55.0%
TTTGTCTGCAGGGGGCTTGA+TGG + chr2_4:52654132-52654151 Msa0334320:CDS 55.0%
AGGGCGACCACAGTCAATGT+AGG - chr2_4:52654158-52654177 None:intergenic 55.0%
GCCCTCCAGAGGATCTAGTT+AGG + chr2_4:52654173-52654192 Msa0334320:CDS 55.0%
! CACGGTCCGGAAAGTATGCA+AGG + chr2_4:52654326-52654345 Msa0334320:CDS 55.0%
GCTACTCGGCCAAGTATGTG+AGG + chr2_4:52654356-52654375 Msa0334320:CDS 55.0%
GCAAAGATTGAACGCGGCGG+CGG - chr2_4:52652320-52652339 None:intergenic 60.0%
AACTTTCGCCGCCGGAGCTA+CGG - chr2_4:52652450-52652469 None:intergenic 60.0%
CCCCGTGAGCTTAGCTCAGT+TGG + chr2_4:52652783-52652802 Msa0334320:intron 60.0%
! TGAGGGGGCACAGAATCTCG+TGG + chr2_4:52653736-52653755 Msa0334320:CDS 60.0%
GAGTGCACTGAAGCGGCCAA+TGG - chr2_4:52653897-52653916 None:intergenic 60.0%
! GTGCAGGGAGTGCACTGAAG+CGG - chr2_4:52653904-52653923 None:intergenic 60.0%
GTCCGGCGAGGAGTTTGACA+CGG + chr2_4:52654308-52654327 Msa0334320:CDS 60.0%
GACCGTGTCAAACTCCTCGC+CGG - chr2_4:52654313-52654332 None:intergenic 60.0%
GCGAGGAGTTTGACACGGTC+CGG + chr2_4:52654313-52654332 Msa0334320:CDS 60.0%
TGCAGTGTGGCTGATGAGGC+CGG + chr2_4:52654651-52654670 Msa0334320:three_prime_UTR 60.0%
! AACGTCGGCTACCGTCGCTG+AGG + chr2_4:52652411-52652430 Msa0334320:CDS 65.0%
GAAGTCCTCCGTAGCTCCGG+CGG + chr2_4:52652439-52652458 Msa0334320:CDS 65.0%
TGACTGTGGTCGCCCTCCAG+AGG + chr2_4:52654162-52654181 Msa0334320:CDS 65.0%
CTGATGAGGACAGTCCGGCG+AGG + chr2_4:52654296-52654315 Msa0334320:CDS 65.0%
TTTCGCCGCCGGAGCTACGG+AGG - chr2_4:52652447-52652466 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 52652262 52654871 52652262 ID=Msa0334320;Name=Msa0334320
chr2_4 mRNA 52652262 52654871 52652262 ID=Msa0334320-mRNA-1;Parent=Msa0334320;Name=Msa0334320-mRNA-1;_AED=0.00;_eAED=0.00;_QI=78|1|1|1|1|1|2|319|389
chr2_4 exon 52652262 52652665 52652262 ID=Msa0334320-mRNA-1:exon:15838;Parent=Msa0334320-mRNA-1
chr2_4 exon 52653709 52654871 52653709 ID=Msa0334320-mRNA-1:exon:15839;Parent=Msa0334320-mRNA-1
chr2_4 five_prime_UTR 52652262 52652339 52652262 ID=Msa0334320-mRNA-1:five_prime_utr;Parent=Msa0334320-mRNA-1
chr2_4 CDS 52652340 52652665 52652340 ID=Msa0334320-mRNA-1:cds;Parent=Msa0334320-mRNA-1
chr2_4 CDS 52653709 52654552 52653709 ID=Msa0334320-mRNA-1:cds;Parent=Msa0334320-mRNA-1
chr2_4 three_prime_UTR 52654553 52654871 52654553 ID=Msa0334320-mRNA-1:three_prime_utr;Parent=Msa0334320-mRNA-1
Gene Sequence

>Msa0334320

ATGGAAGTTTTCTTTCTGTTACATGAGTTATCTGATCTCTGTCTCGGTAAGCCGCCGTTGAAGTCGCTTTCAACGTCGGCTACCGTCGCTGAGGCAATTGAAGTCCTCCGTAGCTCCGGCGGCGAAAGTTTCGTCAGTATTTGGAACTGTGACCACTCTGAATTCGGTCAATGTCAATGTGTTGGGAAAATTTGTATGGTTGATGTTATTCTTTATCTGTGCAAAGAACAGAATCTTTTGTGTCCTTCCAAAGCTCTTAAGGCTTCAATTTCCAATGTTTTGAATAAGGTTGATGGTCTTGTTGTTCATCTAGAACCTTCATCTAGCTTATTGGATGCCATTGATCTCATACTTGAGGGGGCACAGAATCTCGTGGTGCCAATTTTGCAGACAAAAAAAGGTGGCCTTTCAAGGAGAAAACTGCAGCAGAAGTCATTAACAATCAACAGCCACAACGGTGTTGAGTTCTGTTGGTTAACACAAGAGGATGTGATCAGGTTCTTGCTTGGTTCCATTGGCCGCTTCAGTGCACTCCCTGCACAATCCATCGATCGTCTCAATATTATCAGCTCGGATGTGCTCTCCATTGATTACTCTTCCCAGGCGTCTTCTGCTGTTGAAGCCATCTCAAAGTCCCTCACACAACAAACTTCTGTTGCAATTGTCGACGGTGATGGGACATTCATCGGTGAGATATCACCCTTCACACTTGCATGTTGTGATGAGACGGTTGCGGCCGCCATCACAACTTTGTCTGCAGGGGGCTTGATGGCCTACATTGACTGTGGTCGCCCTCCAGAGGATCTAGTTAGGGTTGTAAAGGCAAGGTTGAAGGAAAAGAATTTGGAAAAACTGCTACAAGAGTTTACGCTTTTGACTTCTTTGACCGGTGATATGTCATCCTCCTCTTCATCTGATGAGGACAGTCCGGCGAGGAGTTTGACACGGTCCGGAAAGTATGCAAGGTCATCGAGCTACTCGGCCAAGTATGTGAGGAATGTAGAGGCTATAGTTTGTCATCCCAAGAGCTCTTTGATTGCTGTGATGATGCAAGCAATTGCTAATAGAGTGAATTACTTGTGGGTTATTGAGGATGATTGGAGCTTAGTTGGCATTGTTACTTTTTCTAATATCTTGAAGGTGTTCAAAGAGCGTTTAGAAGTTATTTAG

Protein sequence

>Msa0334320

MEVFFLLHELSDLCLGKPPLKSLSTSATVAEAIEVLRSSGGESFVSIWNCDHSEFGQCQCVGKICMVDVILYLCKEQNLLCPSKALKASISNVLNKVDGLVVHLEPSSSLLDAIDLILEGAQNLVVPILQTKKGGLSRRKLQQKSLTINSHNGVEFCWLTQEDVIRFLLGSIGRFSALPAQSIDRLNIISSDVLSIDYSSQASSAVEAISKSLTQQTSVAIVDGDGTFIGEISPFTLACCDETVAAAITTLSAGGLMAYIDCGRPPEDLVRVVKARLKEKNLEKLLQEFTLLTSLTGDMSSSSSSDEDSPARSLTRSGKYARSSSYSAKYVRNVEAIVCHPKSSLIAVMMQAIANRVNYLWVIEDDWSLVGIVTFSNILKVFKERLEVI*