Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024620 | sp|Q9ZUX1|C94C1_ARATH | 48.118 | 372 | 157 | 5 | 1 | 340 | 127 | 494 | 9.29e-115 | 344 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024620 | Msa0026450 | 0.801099 | 1.056554e-48 | -8.615850e-47 |
| Msa0024620 | Msa0072120 | 0.911692 | 4.559219e-83 | -8.615850e-47 |
| Msa0024620 | Msa0120490 | 0.927273 | 1.478570e-91 | -8.615850e-47 |
| Msa0024620 | Msa0163710 | 0.918832 | 9.571493e-87 | -8.615850e-47 |
| Msa0024620 | Msa0943970 | 0.801502 | 8.736042e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024620 | MtrunA17_Chr1g0178971 | 87.903 | 372 | 14 | 3 | 1 | 342 | 144 | 514 | 0.0 | 649 |
| Msa0024620 | MtrunA17_Chr4g0026941 | 51.436 | 383 | 135 | 6 | 1 | 340 | 165 | 539 | 7.29e-129 | 379 |
| Msa0024620 | MtrunA17_Chr2g0321171 | 50.000 | 366 | 145 | 4 | 1 | 337 | 139 | 495 | 5.60e-126 | 370 |
| Msa0024620 | MtrunA17_Chr7g0260831 | 38.889 | 378 | 182 | 7 | 1 | 340 | 136 | 502 | 2.22e-85 | 266 |
| Msa0024620 | MtrunA17_Chr7g0260821 | 38.522 | 379 | 182 | 8 | 1 | 340 | 137 | 503 | 8.45e-82 | 257 |
| Msa0024620 | MtrunA17_Chr7g0255131 | 39.842 | 379 | 181 | 9 | 2 | 340 | 137 | 508 | 3.02e-77 | 245 |
| Msa0024620 | MtrunA17_Chr7g0225531 | 35.417 | 384 | 192 | 7 | 1 | 340 | 140 | 511 | 6.15e-75 | 239 |
| Msa0024620 | MtrunA17_Chr3g0119681 | 35.567 | 388 | 201 | 6 | 1 | 343 | 137 | 520 | 1.29e-74 | 239 |
| Msa0024620 | MtrunA17_Chr1g0184461 | 36.292 | 383 | 192 | 9 | 1 | 343 | 137 | 507 | 6.77e-73 | 234 |
| Msa0024620 | MtrunA17_Chr1g0184421 | 36.579 | 380 | 189 | 9 | 1 | 340 | 137 | 504 | 4.97e-72 | 232 |
| Msa0024620 | MtrunA17_Chr2g0309301 | 52.105 | 190 | 85 | 1 | 39 | 228 | 1 | 184 | 5.30e-65 | 204 |
| Msa0024620 | MtrunA17_Chr1g0164321 | 36.639 | 363 | 170 | 10 | 2 | 310 | 164 | 520 | 1.31e-64 | 214 |
| Msa0024620 | MtrunA17_Chr4g0038271 | 34.844 | 353 | 185 | 6 | 2 | 310 | 182 | 533 | 1.47e-64 | 214 |
| Msa0024620 | MtrunA17_Chr8g0387001 | 33.943 | 383 | 198 | 8 | 2 | 340 | 134 | 505 | 1.71e-61 | 204 |
| Msa0024620 | MtrunA17_Chr3g0104351 | 33.075 | 387 | 198 | 8 | 2 | 340 | 143 | 516 | 4.57e-60 | 201 |
| Msa0024620 | MtrunA17_Chr8g0348751 | 33.903 | 351 | 189 | 7 | 2 | 310 | 134 | 483 | 9.58e-60 | 201 |
| Msa0024620 | MtrunA17_Chr8g0351401 | 32.031 | 384 | 211 | 10 | 1 | 340 | 133 | 510 | 7.02e-58 | 195 |
| Msa0024620 | MtrunA17_Chr8g0351421 | 33.850 | 387 | 200 | 13 | 1 | 340 | 133 | 510 | 3.39e-56 | 191 |
| Msa0024620 | MtrunA17_Chr8g0351441 | 32.987 | 385 | 206 | 10 | 1 | 340 | 132 | 509 | 5.01e-56 | 190 |
| Msa0024620 | MtrunA17_Chr8g0351461 | 33.247 | 385 | 205 | 11 | 1 | 340 | 132 | 509 | 6.86e-56 | 189 |
| Msa0024620 | MtrunA17_Chr5g0429651 | 31.688 | 385 | 204 | 9 | 2 | 340 | 137 | 508 | 9.93e-54 | 184 |
| Msa0024620 | MtrunA17_Chr8g0380501 | 34.140 | 372 | 196 | 10 | 8 | 340 | 130 | 491 | 2.08e-53 | 182 |
| Msa0024620 | MtrunA17_Chr8g0351311 | 35.127 | 316 | 152 | 9 | 42 | 312 | 179 | 486 | 1.08e-51 | 179 |
| Msa0024620 | MtrunA17_Chr6g0449381 | 31.034 | 377 | 207 | 8 | 8 | 340 | 138 | 505 | 2.39e-51 | 177 |
| Msa0024620 | MtrunA17_Chr4g0004481 | 31.858 | 339 | 190 | 6 | 8 | 310 | 132 | 465 | 5.13e-51 | 176 |
| Msa0024620 | MtrunA17_Chr7g0227281 | 34.431 | 334 | 176 | 7 | 14 | 310 | 140 | 467 | 7.29e-51 | 176 |
| Msa0024620 | MtrunA17_Chr8g0351391 | 32.022 | 356 | 189 | 10 | 1 | 312 | 139 | 485 | 1.09e-50 | 176 |
| Msa0024620 | MtrunA17_Chr7g0214931 | 36.301 | 292 | 165 | 6 | 1 | 281 | 153 | 434 | 1.61e-50 | 174 |
| Msa0024620 | MtrunA17_Chr6g0449361 | 30.435 | 368 | 207 | 7 | 14 | 340 | 144 | 503 | 1.98e-50 | 175 |
| Msa0024620 | MtrunA17_Chr6g0449351 | 30.081 | 369 | 197 | 9 | 14 | 335 | 104 | 458 | 2.32e-50 | 174 |
| Msa0024620 | MtrunA17_Chr7g0227291 | 33.431 | 341 | 182 | 8 | 8 | 310 | 134 | 467 | 1.47e-49 | 172 |
| Msa0024620 | MtrunA17_Chr6g0449331 | 29.592 | 392 | 205 | 12 | 8 | 341 | 138 | 516 | 2.66e-48 | 169 |
| Msa0024620 | MtrunA17_Chr4g0067191 | 30.673 | 401 | 208 | 11 | 2 | 340 | 123 | 515 | 5.07e-48 | 169 |
| Msa0024620 | MtrunA17_Chr1g0204271 | 32.011 | 353 | 192 | 10 | 2 | 312 | 134 | 480 | 1.20e-47 | 167 |
| Msa0024620 | MtrunA17_Chr1g0164351 | 38.403 | 263 | 138 | 7 | 1 | 244 | 163 | 420 | 5.24e-47 | 164 |
| Msa0024620 | MtrunA17_Chr6g0449341 | 29.771 | 393 | 203 | 12 | 8 | 341 | 186 | 564 | 4.02e-46 | 164 |
| Msa0024620 | MtrunA17_Chr1g0163351 | 29.921 | 381 | 210 | 13 | 8 | 340 | 134 | 505 | 2.25e-43 | 156 |
| Msa0024620 | MtrunA17_Chr1g0163501 | 29.365 | 378 | 215 | 12 | 6 | 340 | 131 | 499 | 6.64e-42 | 152 |
| Msa0024620 | MtrunA17_Chr1g0163421 | 29.412 | 391 | 213 | 13 | 1 | 340 | 162 | 540 | 7.38e-42 | 152 |
| Msa0024620 | MtrunA17_Chr1g0163511 | 30.636 | 346 | 180 | 11 | 19 | 310 | 153 | 492 | 2.70e-41 | 151 |
| Msa0024620 | MtrunA17_Chr1g0163391 | 29.310 | 348 | 198 | 9 | 6 | 310 | 133 | 475 | 3.64e-41 | 150 |
| Msa0024620 | MtrunA17_Chr1g0184471 | 38.967 | 213 | 116 | 3 | 46 | 254 | 158 | 360 | 2.31e-40 | 146 |
| Msa0024620 | MtrunA17_Chr1g0171041 | 29.248 | 359 | 191 | 11 | 6 | 310 | 131 | 480 | 5.22e-40 | 147 |
| Msa0024620 | MtrunA17_Chr1g0163451 | 28.643 | 398 | 207 | 14 | 1 | 340 | 146 | 524 | 2.23e-39 | 145 |
| Msa0024620 | MtrunA17_Chr1g0163281 | 26.761 | 355 | 198 | 9 | 6 | 310 | 150 | 492 | 7.20e-39 | 144 |
| Msa0024620 | MtrunA17_Chr1g0163461 | 28.771 | 358 | 201 | 7 | 1 | 310 | 141 | 492 | 1.19e-38 | 144 |
| Msa0024620 | MtrunA17_Chr1g0163491 | 27.226 | 393 | 209 | 13 | 6 | 340 | 148 | 521 | 7.30e-38 | 141 |
| Msa0024620 | MtrunA17_Chr1g0183611 | 27.222 | 360 | 195 | 8 | 6 | 310 | 51 | 398 | 6.19e-36 | 134 |
| Msa0024620 | MtrunA17_Chr1g0163211 | 28.125 | 384 | 208 | 12 | 6 | 340 | 137 | 501 | 5.14e-34 | 130 |
| Msa0024620 | MtrunA17_Chr2g0308941 | 52.381 | 105 | 50 | 0 | 15 | 119 | 91 | 195 | 4.93e-33 | 121 |
| Msa0024620 | MtrunA17_Chr1g0163401 | 28.075 | 374 | 208 | 12 | 19 | 338 | 146 | 512 | 1.66e-32 | 126 |
| Msa0024620 | MtrunA17_Chr2g0308951 | 54.082 | 98 | 45 | 0 | 22 | 119 | 4 | 101 | 2.69e-31 | 114 |
| Msa0024620 | MtrunA17_Chr1g0163431 | 27.414 | 321 | 187 | 9 | 6 | 284 | 95 | 411 | 5.94e-30 | 118 |
| Msa0024620 | MtrunA17_Chr5g0403451 | 32.883 | 222 | 97 | 5 | 141 | 310 | 31 | 252 | 8.33e-30 | 115 |
| Msa0024620 | MtrunA17_Chr1g0204241 | 28.904 | 301 | 142 | 8 | 51 | 312 | 4 | 271 | 6.49e-29 | 113 |
| Msa0024620 | MtrunA17_Chr1g0163371 | 30.851 | 188 | 97 | 3 | 153 | 310 | 11 | 195 | 8.21e-26 | 103 |
| Msa0024620 | MtrunA17_Chr0c19g0493771 | 24.773 | 331 | 177 | 13 | 34 | 310 | 308 | 620 | 1.88e-17 | 83.6 |
| Msa0024620 | MtrunA17_Chr5g0396521 | 28.571 | 217 | 91 | 4 | 153 | 313 | 337 | 545 | 8.75e-15 | 75.5 |
| Msa0024620 | MtrunA17_Chr6g0457421 | 23.706 | 367 | 221 | 13 | 9 | 339 | 163 | 506 | 2.05e-14 | 73.9 |
| Msa0024620 | MtrunA17_Chr2g0280011 | 28.571 | 203 | 101 | 5 | 159 | 319 | 3 | 203 | 3.55e-14 | 70.9 |
| Msa0024620 | MtrunA17_Chr5g0403441 | 33.588 | 131 | 83 | 3 | 2 | 132 | 138 | 264 | 4.56e-14 | 72.0 |
| Msa0024620 | MtrunA17_Chr2g0309311 | 30.405 | 148 | 91 | 4 | 136 | 278 | 11 | 151 | 5.89e-14 | 69.7 |
| Msa0024620 | MtrunA17_Chr1g0203151 | 24.638 | 276 | 156 | 9 | 103 | 339 | 248 | 510 | 1.12e-13 | 72.0 |
| Msa0024620 | MtrunA17_Chr1g0203141 | 25.000 | 276 | 155 | 9 | 103 | 339 | 252 | 514 | 3.95e-13 | 70.1 |
| Msa0024620 | MtrunA17_Chr4g0014051 | 28.685 | 251 | 123 | 9 | 112 | 321 | 276 | 511 | 4.56e-13 | 70.1 |
| Msa0024620 | MtrunA17_Chr8g0357121 | 43.860 | 57 | 32 | 0 | 254 | 310 | 67 | 123 | 2.15e-12 | 63.9 |
| Msa0024620 | MtrunA17_Chr3g0107511 | 25.072 | 347 | 200 | 15 | 27 | 340 | 158 | 477 | 4.10e-12 | 67.0 |
| Msa0024620 | MtrunA17_Chr7g0248991 | 23.986 | 296 | 153 | 13 | 34 | 275 | 90 | 367 | 4.37e-12 | 66.6 |
| Msa0024620 | MtrunA17_Chr7g0215181 | 27.670 | 206 | 110 | 7 | 163 | 342 | 319 | 511 | 4.53e-12 | 67.0 |
| Msa0024620 | MtrunA17_Chr8g0380471 | 24.335 | 263 | 156 | 7 | 107 | 339 | 226 | 475 | 6.84e-12 | 66.2 |
| Msa0024620 | MtrunA17_Chr3g0107501 | 23.219 | 379 | 209 | 17 | 16 | 340 | 127 | 477 | 1.06e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024620 | AT2G27690.1 | 48.118 | 372 | 157 | 5 | 1 | 340 | 127 | 494 | 9.44e-116 | 344 |
| Msa0024620 | AT3G48520.1 | 38.158 | 380 | 182 | 7 | 1 | 340 | 133 | 499 | 8.99e-84 | 263 |
| Msa0024620 | AT5G63450.1 | 38.642 | 383 | 177 | 8 | 1 | 340 | 135 | 502 | 1.57e-81 | 257 |
| Msa0024620 | AT5G63450.2 | 38.642 | 383 | 177 | 8 | 1 | 340 | 193 | 560 | 6.96e-81 | 257 |
| Msa0024620 | AT3G56630.1 | 36.000 | 375 | 199 | 8 | 2 | 340 | 129 | 498 | 3.64e-71 | 230 |
| Msa0024620 | AT1G34540.1 | 36.888 | 347 | 176 | 7 | 2 | 310 | 129 | 470 | 2.58e-70 | 228 |
| Msa0024620 | AT5G08250.1 | 32.632 | 380 | 203 | 8 | 2 | 335 | 101 | 473 | 6.80e-66 | 216 |
| Msa0024620 | AT1G24540.1 | 33.075 | 387 | 205 | 8 | 1 | 340 | 141 | 520 | 2.14e-65 | 215 |
| Msa0024620 | AT5G08250.2 | 32.632 | 380 | 203 | 8 | 2 | 335 | 163 | 535 | 2.58e-65 | 216 |
| Msa0024620 | AT5G23190.1 | 34.561 | 353 | 186 | 7 | 2 | 310 | 162 | 513 | 6.93e-65 | 215 |
| Msa0024620 | AT3G01900.1 | 35.106 | 376 | 194 | 8 | 1 | 340 | 129 | 490 | 1.01e-64 | 213 |
| Msa0024620 | AT1G13140.1 | 33.618 | 351 | 187 | 6 | 5 | 310 | 148 | 497 | 2.86e-62 | 207 |
| Msa0024620 | AT1G63710.1 | 34.311 | 341 | 184 | 7 | 2 | 303 | 134 | 473 | 2.93e-62 | 207 |
| Msa0024620 | AT2G44890.1 | 33.592 | 387 | 206 | 9 | 1 | 343 | 132 | 511 | 3.22e-59 | 199 |
| Msa0024620 | AT2G45970.1 | 33.333 | 351 | 191 | 8 | 2 | 310 | 134 | 483 | 9.76e-59 | 198 |
| Msa0024620 | AT1G13150.1 | 31.675 | 382 | 210 | 9 | 5 | 340 | 141 | 517 | 1.27e-58 | 197 |
| Msa0024620 | AT4G00360.1 | 32.386 | 352 | 194 | 7 | 2 | 310 | 134 | 484 | 2.46e-58 | 197 |
| Msa0024620 | AT2G45510.1 | 34.366 | 355 | 186 | 9 | 1 | 312 | 132 | 482 | 3.51e-58 | 196 |
| Msa0024620 | AT2G23180.1 | 34.722 | 360 | 170 | 10 | 6 | 310 | 136 | 485 | 1.34e-57 | 194 |
| Msa0024620 | AT5G58860.1 | 32.817 | 387 | 199 | 10 | 2 | 341 | 137 | 509 | 1.92e-57 | 194 |
| Msa0024620 | AT1G01600.1 | 32.203 | 354 | 194 | 6 | 2 | 310 | 134 | 486 | 5.15e-57 | 194 |
| Msa0024620 | AT3G26125.1 | 31.807 | 393 | 203 | 10 | 5 | 340 | 148 | 532 | 6.02e-57 | 193 |
| Msa0024620 | AT1G13140.2 | 32.948 | 346 | 170 | 6 | 5 | 310 | 148 | 471 | 1.72e-56 | 191 |
| Msa0024620 | AT4G39490.1 | 34.270 | 356 | 170 | 11 | 12 | 310 | 141 | 489 | 4.22e-55 | 188 |
| Msa0024620 | AT4G39480.1 | 32.958 | 355 | 185 | 8 | 6 | 310 | 135 | 486 | 7.79e-55 | 187 |
| Msa0024620 | AT2G21910.1 | 31.186 | 388 | 201 | 10 | 6 | 341 | 134 | 507 | 6.32e-54 | 185 |
| Msa0024620 | AT1G69500.1 | 31.579 | 380 | 181 | 9 | 2 | 308 | 123 | 496 | 2.31e-51 | 178 |
| Msa0024620 | AT2G44890.2 | 31.854 | 383 | 200 | 10 | 1 | 343 | 132 | 493 | 1.41e-50 | 176 |
| Msa0024620 | AT1G65340.1 | 30.682 | 352 | 184 | 9 | 7 | 310 | 137 | 476 | 3.58e-49 | 172 |
| Msa0024620 | AT4G39500.1 | 32.295 | 353 | 183 | 8 | 6 | 310 | 95 | 439 | 4.14e-49 | 171 |
| Msa0024620 | AT4G39500.2 | 32.295 | 353 | 183 | 8 | 6 | 310 | 145 | 489 | 1.28e-48 | 171 |
| Msa0024620 | AT1G47620.1 | 30.990 | 384 | 203 | 12 | 2 | 335 | 139 | 510 | 5.26e-48 | 169 |
| Msa0024620 | AT4G39510.1 | 31.347 | 386 | 208 | 11 | 2 | 340 | 130 | 505 | 9.16e-48 | 168 |
| Msa0024620 | AT4G32170.1 | 31.909 | 351 | 185 | 10 | 6 | 310 | 134 | 476 | 1.05e-46 | 166 |
| Msa0024620 | AT1G57750.1 | 30.816 | 331 | 169 | 8 | 21 | 306 | 150 | 465 | 3.43e-46 | 164 |
| Msa0024620 | AT5G52320.1 | 28.267 | 375 | 209 | 9 | 9 | 337 | 139 | 499 | 6.94e-46 | 163 |
| Msa0024620 | AT5G52320.2 | 28.736 | 348 | 191 | 8 | 9 | 310 | 139 | 475 | 2.69e-45 | 162 |
| Msa0024620 | AT5G02900.1 | 32.934 | 334 | 164 | 12 | 30 | 310 | 125 | 451 | 6.58e-44 | 157 |
| Msa0024620 | AT1G57750.2 | 30.556 | 288 | 141 | 7 | 21 | 264 | 150 | 422 | 1.45e-35 | 134 |
| Msa0024620 | AT1G31800.1 | 24.119 | 369 | 211 | 14 | 21 | 340 | 221 | 569 | 1.66e-14 | 75.1 |
| Msa0024620 | AT3G61040.1 | 25.564 | 266 | 157 | 4 | 108 | 339 | 235 | 493 | 3.42e-14 | 73.9 |
| Msa0024620 | AT5G52400.1 | 27.935 | 247 | 128 | 9 | 130 | 339 | 285 | 518 | 1.36e-13 | 72.0 |
| Msa0024620 | AT3G53130.1 | 28.261 | 184 | 94 | 3 | 157 | 310 | 337 | 512 | 7.73e-13 | 69.7 |
| Msa0024620 | AT1G64940.1 | 23.695 | 249 | 140 | 8 | 100 | 306 | 235 | 475 | 9.36e-11 | 63.2 |
Find 46 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAGTCATAAGTTTCTTAT+TGG | 0.165681 | 1_1:+47264080 | Msa0024620:CDS |
| ATAGATCAAAAGAGAAAATT+AGG | 0.203818 | 1_1:+47263985 | Msa0024620:CDS |
| TTAGAAGCTGAACAAGTAAT+TGG | 0.218363 | 1_1:+47264186 | Msa0024620:CDS |
| TTCAAAGGCAAAAGATCTTA+TGG | 0.272569 | 1_1:-47263632 | None:intergenic |
| TGGTTGTGTCTCCAATAATT+TGG | 0.275694 | 1_1:+47263878 | Msa0024620:CDS |
| AAACAACTTGGTCTAGGTTT+TGG | 0.292314 | 1_1:-47263702 | None:intergenic |
| CATCACTCACAAGTTTCTTT+TGG | 0.296519 | 1_1:+47264124 | Msa0024620:CDS |
| TGGTAAAGAAATGGCTTTGA+TGG | 0.321781 | 1_1:+47264546 | Msa0024620:CDS |
| AACTTTGAATCAAATTGAAT+TGG | 0.350752 | 1_1:-47264315 | None:intergenic |
| AAAATCTCTTTCTCAACTTC+CGG | 0.371569 | 1_1:-47264162 | None:intergenic |
| TAGAAAGTTTCATATTGAAT+TGG | 0.372190 | 1_1:+47264597 | Msa0024620:CDS |
| CCATCTTTCAACCACCTTTG+AGG | 0.373622 | 1_1:-47264460 | None:intergenic |
| TTGGAAGATACAATGTTTCA+TGG | 0.380597 | 1_1:+47264616 | Msa0024620:CDS |
| GTCATAAGTTTCTTATTGGC+TGG | 0.416268 | 1_1:+47264084 | Msa0024620:CDS |
| TTTGAATCAAATTGAATTGG+TGG | 0.416454 | 1_1:-47264312 | None:intergenic |
| GTTAGTCCAGGAGAGAATCT+TGG | 0.423157 | 1_1:-47264643 | None:intergenic |
| GGTTTGTATTGGTAAAGAAA+TGG | 0.442275 | 1_1:+47264537 | Msa0024620:CDS |
| GCTGGGTTAAGGGTTTGTAT+TGG | 0.467958 | 1_1:+47264526 | Msa0024620:CDS |
| TTAGTCCAGGAGAGAATCTT+GGG | 0.473412 | 1_1:-47264642 | None:intergenic |
| CCTCTAGGACGAACAAATAC+AGG | 0.475960 | 1_1:-47264688 | None:intergenic |
| GGGTACTTGAATTGATTTGA+AGG | 0.477164 | 1_1:-47264493 | None:intergenic |
| AGCAAAATCCGACATGGGTA+AGG | 0.479551 | 1_1:-47263812 | None:intergenic |
| TTGACAACAAATCTTTGTGA+TGG | 0.482486 | 1_1:-47264014 | None:intergenic |
| AGTAGTACGGATTATTCAGT+TGG | 0.488093 | 1_1:-47264713 | None:intergenic |
| GTAGAGGGATGAGTCGATGT+TGG | 0.496220 | 1_1:-47263672 | None:intergenic |
| GCAAAAGTGGCAGTTAGTCC+AGG | 0.508151 | 1_1:-47264655 | None:intergenic |
| TGTTAGAGTTTAAGCCTCAA+AGG | 0.521148 | 1_1:+47264446 | Msa0024620:intron |
| TTCGTTGTTGACAACTTCAA+AGG | 0.528287 | 1_1:-47263647 | None:intergenic |
| CCTCAAAGGTGGTTGAAAGA+TGG | 0.529001 | 1_1:+47264460 | Msa0024620:CDS |
| GGTAACCCAAGATTCTCTCC+TGG | 0.530666 | 1_1:+47264637 | Msa0024620:CDS |
| TGACAACAAATCTTTGTGAT+GGG | 0.536494 | 1_1:-47264013 | None:intergenic |
| CCTGTATTTGTTCGTCCTAG+AGG | 0.538130 | 1_1:+47264688 | Msa0024620:CDS |
| ATTATTCAGTTGGTTCCTCT+AGG | 0.543249 | 1_1:-47264703 | None:intergenic |
| AGGAAGACCAAAAGCAAAAG+TGG | 0.548305 | 1_1:-47264668 | None:intergenic |
| AAGGATGTTTCTAGACACAT+AGG | 0.557282 | 1_1:-47263793 | None:intergenic |
| ACACATAGGGTCTAAACCAA+AGG | 0.600563 | 1_1:-47263779 | None:intergenic |
| AGAAAGAGCAAAATCCGACA+TGG | 0.604355 | 1_1:-47263818 | None:intergenic |
| AGAAACATCCTTACCCATGT+CGG | 0.620375 | 1_1:+47263804 | Msa0024620:CDS |
| ATTATCAGCTGAAAGAGCCA+TGG | 0.623137 | 1_1:+47263858 | Msa0024620:CDS |
| AGGATGTTTCTAGACACATA+GGG | 0.642200 | 1_1:-47263792 | None:intergenic |
| GAAAGAGCAAAATCCGACAT+GGG | 0.650354 | 1_1:-47263817 | None:intergenic |
| TTTGATGGAACTTAAAACTG+TGG | 0.662676 | 1_1:+47264561 | Msa0024620:CDS |
| TAGAGTTTAAGCCTCAAAGG+TGG | 0.669231 | 1_1:+47264449 | Msa0024620:intron |
| ACTTGTGAGTGATGATGCCA+CGG | 0.691784 | 1_1:-47264115 | None:intergenic |
| AATTATTGGAGACACAACCA+TGG | 0.692792 | 1_1:-47263875 | None:intergenic |
| ATTGGCTGGTCGTGACACCG+TGG | 0.708219 | 1_1:+47264098 | Msa0024620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATGATGAAAAAAATAATTA+TGG | + | chr1_1:47264216-47264235 | Msa0024620:CDS | 15.0% |
| !! | GATGATGAAAAAAATAATTA+TGG | + | chr1_1:47264216-47264235 | Msa0024620:CDS | 15.0% |
| !!! | ATCAAAAGATTTTTCAACAT+GGG | + | chr1_1:47263904-47263923 | Msa0024620:CDS | 20.0% |
| !! | ATAGATCAAAAGAGAAAATT+AGG | + | chr1_1:47263985-47264004 | Msa0024620:CDS | 20.0% |
| !! | AACTTTGAATCAAATTGAAT+TGG | - | chr1_1:47264318-47264337 | None:intergenic | 20.0% |
| !!! | ATTTGATTCAAAGTTTTGTT+TGG | + | chr1_1:47264323-47264342 | Msa0024620:CDS | 20.0% |
| !! | TAGAAAGTTTCATATTGAAT+TGG | + | chr1_1:47264597-47264616 | Msa0024620:CDS | 20.0% |
| !!! | ATCAAAAGATTTTTCAACAT+GGG | + | chr1_1:47263904-47263923 | Msa0024620:CDS | 20.0% |
| !! | ATAGATCAAAAGAGAAAATT+AGG | + | chr1_1:47263985-47264004 | Msa0024620:CDS | 20.0% |
| !! | AACTTTGAATCAAATTGAAT+TGG | - | chr1_1:47264318-47264337 | None:intergenic | 20.0% |
| !!! | ATTTGATTCAAAGTTTTGTT+TGG | + | chr1_1:47264323-47264342 | Msa0024620:CDS | 20.0% |
| !! | TAGAAAGTTTCATATTGAAT+TGG | + | chr1_1:47264597-47264616 | Msa0024620:CDS | 20.0% |
| !! | AGTATTTGTAGATTTTCCTT+TGG | + | chr1_1:47263763-47263782 | Msa0024620:CDS | 25.0% |
| !! | CTTTTGATCTTCCAAATTAT+TGG | - | chr1_1:47263892-47263911 | None:intergenic | 25.0% |
| !!! | GATCAAAAGATTTTTCAACA+TGG | + | chr1_1:47263903-47263922 | Msa0024620:CDS | 25.0% |
| ! | CATAGTCATAAGTTTCTTAT+TGG | + | chr1_1:47264080-47264099 | Msa0024620:CDS | 25.0% |
| ! | TTGGTTATTAGCAAAAAATC+CGG | + | chr1_1:47264143-47264162 | Msa0024620:CDS | 25.0% |
| !!! | TTATTTTTTTCATCATCACG+TGG | - | chr1_1:47264213-47264232 | None:intergenic | 25.0% |
| !! | TAACGAATTTTGAACAACTT+AGG | + | chr1_1:47264241-47264260 | Msa0024620:CDS | 25.0% |
| ! | TTTGAATCAAATTGAATTGG+TGG | - | chr1_1:47264315-47264334 | None:intergenic | 25.0% |
| !! | AGTATTTGTAGATTTTCCTT+TGG | + | chr1_1:47263763-47263782 | Msa0024620:CDS | 25.0% |
| !! | CTTTTGATCTTCCAAATTAT+TGG | - | chr1_1:47263892-47263911 | None:intergenic | 25.0% |
| !!! | GATCAAAAGATTTTTCAACA+TGG | + | chr1_1:47263903-47263922 | Msa0024620:CDS | 25.0% |
| ! | CATAGTCATAAGTTTCTTAT+TGG | + | chr1_1:47264080-47264099 | Msa0024620:CDS | 25.0% |
| ! | TTGGTTATTAGCAAAAAATC+CGG | + | chr1_1:47264143-47264162 | Msa0024620:CDS | 25.0% |
| !!! | TTATTTTTTTCATCATCACG+TGG | - | chr1_1:47264213-47264232 | None:intergenic | 25.0% |
| !! | TAACGAATTTTGAACAACTT+AGG | + | chr1_1:47264241-47264260 | Msa0024620:CDS | 25.0% |
| ! | TTTGAATCAAATTGAATTGG+TGG | - | chr1_1:47264315-47264334 | None:intergenic | 25.0% |
| TTCAAAGGCAAAAGATCTTA+TGG | - | chr1_1:47263635-47263654 | None:intergenic | 30.0% | |
| AATCAAAAACAACTTGGTCT+AGG | - | chr1_1:47263711-47263730 | None:intergenic | 30.0% | |
| CTTGCAAATCAAAAACAACT+TGG | - | chr1_1:47263717-47263736 | None:intergenic | 30.0% | |
| TGACAACAAATCTTTGTGAT+GGG | - | chr1_1:47264016-47264035 | None:intergenic | 30.0% | |
| TTGACAACAAATCTTTGTGA+TGG | - | chr1_1:47264017-47264036 | None:intergenic | 30.0% | |
| AAAATCTCTTTCTCAACTTC+CGG | - | chr1_1:47264165-47264184 | None:intergenic | 30.0% | |
| TTAGAAGCTGAACAAGTAAT+TGG | + | chr1_1:47264186-47264205 | Msa0024620:CDS | 30.0% | |
| AAAAGTGAAAAGTGGTACTA+GGG | + | chr1_1:47264371-47264390 | Msa0024620:intron | 30.0% | |
| TACTTATCATCCTTATGCAA+TGG | + | chr1_1:47264395-47264414 | Msa0024620:intron | 30.0% | |
| ACTTATCATCCTTATGCAAT+GGG | + | chr1_1:47264396-47264415 | Msa0024620:intron | 30.0% | |
| TTAACCCAGCTTGAAAAATA+GGG | - | chr1_1:47264516-47264535 | None:intergenic | 30.0% | |
| !!! | TATTTTTCAAGCTGGGTTAA+GGG | + | chr1_1:47264516-47264535 | Msa0024620:CDS | 30.0% |
| ! | GGTTTGTATTGGTAAAGAAA+TGG | + | chr1_1:47264537-47264556 | Msa0024620:CDS | 30.0% |
| TTTGATGGAACTTAAAACTG+TGG | + | chr1_1:47264561-47264580 | Msa0024620:CDS | 30.0% | |
| TTGGAAGATACAATGTTTCA+TGG | + | chr1_1:47264616-47264635 | Msa0024620:CDS | 30.0% | |
| TTCAAAGGCAAAAGATCTTA+TGG | - | chr1_1:47263635-47263654 | None:intergenic | 30.0% | |
| AATCAAAAACAACTTGGTCT+AGG | - | chr1_1:47263711-47263730 | None:intergenic | 30.0% | |
| CTTGCAAATCAAAAACAACT+TGG | - | chr1_1:47263717-47263736 | None:intergenic | 30.0% | |
| TGACAACAAATCTTTGTGAT+GGG | - | chr1_1:47264016-47264035 | None:intergenic | 30.0% | |
| TTGACAACAAATCTTTGTGA+TGG | - | chr1_1:47264017-47264036 | None:intergenic | 30.0% | |
| AAAATCTCTTTCTCAACTTC+CGG | - | chr1_1:47264165-47264184 | None:intergenic | 30.0% | |
| TTAGAAGCTGAACAAGTAAT+TGG | + | chr1_1:47264186-47264205 | Msa0024620:CDS | 30.0% | |
| AAAAGTGAAAAGTGGTACTA+GGG | + | chr1_1:47264371-47264390 | Msa0024620:intron | 30.0% | |
| TACTTATCATCCTTATGCAA+TGG | + | chr1_1:47264395-47264414 | Msa0024620:intron | 30.0% | |
| ACTTATCATCCTTATGCAAT+GGG | + | chr1_1:47264396-47264415 | Msa0024620:intron | 30.0% | |
| TTAACCCAGCTTGAAAAATA+GGG | - | chr1_1:47264516-47264535 | None:intergenic | 30.0% | |
| !!! | TATTTTTCAAGCTGGGTTAA+GGG | + | chr1_1:47264516-47264535 | Msa0024620:CDS | 30.0% |
| ! | GGTTTGTATTGGTAAAGAAA+TGG | + | chr1_1:47264537-47264556 | Msa0024620:CDS | 30.0% |
| TTTGATGGAACTTAAAACTG+TGG | + | chr1_1:47264561-47264580 | Msa0024620:CDS | 30.0% | |
| TTGGAAGATACAATGTTTCA+TGG | + | chr1_1:47264616-47264635 | Msa0024620:CDS | 30.0% | |
| TTCGTTGTTGACAACTTCAA+AGG | - | chr1_1:47263650-47263669 | None:intergenic | 35.0% | |
| ! | AAACAACTTGGTCTAGGTTT+TGG | - | chr1_1:47263705-47263724 | None:intergenic | 35.0% |
| !! | AGGATGTTTCTAGACACATA+GGG | - | chr1_1:47263795-47263814 | None:intergenic | 35.0% |
| !! | AAGGATGTTTCTAGACACAT+AGG | - | chr1_1:47263796-47263815 | None:intergenic | 35.0% |
| AATTATTGGAGACACAACCA+TGG | - | chr1_1:47263878-47263897 | None:intergenic | 35.0% | |
| TGGTTGTGTCTCCAATAATT+TGG | + | chr1_1:47263878-47263897 | Msa0024620:CDS | 35.0% | |
| GTCATAAGTTTCTTATTGGC+TGG | + | chr1_1:47264084-47264103 | Msa0024620:CDS | 35.0% | |
| ! | CATCACTCACAAGTTTCTTT+TGG | + | chr1_1:47264124-47264143 | Msa0024620:CDS | 35.0% |
| !! | GATGATGATGTTTTACCAGA+TGG | + | chr1_1:47264345-47264364 | Msa0024620:CDS | 35.0% |
| !! | CTTTTCACTTTTGTACCATC+TGG | - | chr1_1:47264363-47264382 | None:intergenic | 35.0% |
| GATGGTACAAAAGTGAAAAG+TGG | + | chr1_1:47264363-47264382 | Msa0024620:intron | 35.0% | |
| CAAAAGTGAAAAGTGGTACT+AGG | + | chr1_1:47264370-47264389 | Msa0024620:intron | 35.0% | |
| GAGGCTTAAACTCTAACAAT+TGG | - | chr1_1:47264444-47264463 | None:intergenic | 35.0% | |
| TGTTAGAGTTTAAGCCTCAA+AGG | + | chr1_1:47264446-47264465 | Msa0024620:intron | 35.0% | |
| !! | GGGTACTTGAATTGATTTGA+AGG | - | chr1_1:47264496-47264515 | None:intergenic | 35.0% |
| !!! | AAGTACCCTATTTTTCAAGC+TGG | + | chr1_1:47264508-47264527 | Msa0024620:CDS | 35.0% |
| !!! | AGTACCCTATTTTTCAAGCT+GGG | + | chr1_1:47264509-47264528 | Msa0024620:CDS | 35.0% |
| CTTAACCCAGCTTGAAAAAT+AGG | - | chr1_1:47264517-47264536 | None:intergenic | 35.0% | |
| !!! | CTATTTTTCAAGCTGGGTTA+AGG | + | chr1_1:47264515-47264534 | Msa0024620:CDS | 35.0% |
| !! | TGGTAAAGAAATGGCTTTGA+TGG | + | chr1_1:47264546-47264565 | Msa0024620:CDS | 35.0% |
| TTCGTTGTTGACAACTTCAA+AGG | - | chr1_1:47263650-47263669 | None:intergenic | 35.0% | |
| ! | AAACAACTTGGTCTAGGTTT+TGG | - | chr1_1:47263705-47263724 | None:intergenic | 35.0% |
| !! | AGGATGTTTCTAGACACATA+GGG | - | chr1_1:47263795-47263814 | None:intergenic | 35.0% |
| !! | AAGGATGTTTCTAGACACAT+AGG | - | chr1_1:47263796-47263815 | None:intergenic | 35.0% |
| AATTATTGGAGACACAACCA+TGG | - | chr1_1:47263878-47263897 | None:intergenic | 35.0% | |
| TGGTTGTGTCTCCAATAATT+TGG | + | chr1_1:47263878-47263897 | Msa0024620:CDS | 35.0% | |
| GTCATAAGTTTCTTATTGGC+TGG | + | chr1_1:47264084-47264103 | Msa0024620:CDS | 35.0% | |
| ! | CATCACTCACAAGTTTCTTT+TGG | + | chr1_1:47264124-47264143 | Msa0024620:CDS | 35.0% |
| !! | GATGATGATGTTTTACCAGA+TGG | + | chr1_1:47264345-47264364 | Msa0024620:CDS | 35.0% |
| !! | CTTTTCACTTTTGTACCATC+TGG | - | chr1_1:47264363-47264382 | None:intergenic | 35.0% |
| GATGGTACAAAAGTGAAAAG+TGG | + | chr1_1:47264363-47264382 | Msa0024620:intron | 35.0% | |
| CAAAAGTGAAAAGTGGTACT+AGG | + | chr1_1:47264370-47264389 | Msa0024620:intron | 35.0% | |
| GAGGCTTAAACTCTAACAAT+TGG | - | chr1_1:47264444-47264463 | None:intergenic | 35.0% | |
| TGTTAGAGTTTAAGCCTCAA+AGG | + | chr1_1:47264446-47264465 | Msa0024620:intron | 35.0% | |
| !! | GGGTACTTGAATTGATTTGA+AGG | - | chr1_1:47264496-47264515 | None:intergenic | 35.0% |
| !!! | AAGTACCCTATTTTTCAAGC+TGG | + | chr1_1:47264508-47264527 | Msa0024620:CDS | 35.0% |
| !!! | AGTACCCTATTTTTCAAGCT+GGG | + | chr1_1:47264509-47264528 | Msa0024620:CDS | 35.0% |
| CTTAACCCAGCTTGAAAAAT+AGG | - | chr1_1:47264517-47264536 | None:intergenic | 35.0% | |
| !!! | CTATTTTTCAAGCTGGGTTA+AGG | + | chr1_1:47264515-47264534 | Msa0024620:CDS | 35.0% |
| !! | TGGTAAAGAAATGGCTTTGA+TGG | + | chr1_1:47264546-47264565 | Msa0024620:CDS | 35.0% |
| !!! | GGTTTTGGTTTTGGAGTAGA+GGG | - | chr1_1:47263690-47263709 | None:intergenic | 40.0% |
| !!! | AGGTTTTGGTTTTGGAGTAG+AGG | - | chr1_1:47263691-47263710 | None:intergenic | 40.0% |
| !!! | CTTGGTCTAGGTTTTGGTTT+TGG | - | chr1_1:47263699-47263718 | None:intergenic | 40.0% |
| ACACATAGGGTCTAAACCAA+AGG | - | chr1_1:47263782-47263801 | None:intergenic | 40.0% | |
| AGAAACATCCTTACCCATGT+CGG | + | chr1_1:47263804-47263823 | Msa0024620:CDS | 40.0% | |
| GAAAGAGCAAAATCCGACAT+GGG | - | chr1_1:47263820-47263839 | None:intergenic | 40.0% | |
| AGAAAGAGCAAAATCCGACA+TGG | - | chr1_1:47263821-47263840 | None:intergenic | 40.0% | |
| ATTATCAGCTGAAAGAGCCA+TGG | + | chr1_1:47263858-47263877 | Msa0024620:CDS | 40.0% | |
| ATCATCCTTATGCAATGGGT+AGG | + | chr1_1:47264400-47264419 | Msa0024620:intron | 40.0% | |
| TAGAGTTTAAGCCTCAAAGG+TGG | + | chr1_1:47264449-47264468 | Msa0024620:intron | 40.0% | |
| TTAGTCCAGGAGAGAATCTT+GGG | - | chr1_1:47264645-47264664 | None:intergenic | 40.0% | |
| !!! | CTAACTGCCACTTTTGCTTT+TGG | + | chr1_1:47264661-47264680 | Msa0024620:CDS | 40.0% |
| AGGAAGACCAAAAGCAAAAG+TGG | - | chr1_1:47264671-47264690 | None:intergenic | 40.0% | |
| !!! | GGTTTTGGTTTTGGAGTAGA+GGG | - | chr1_1:47263690-47263709 | None:intergenic | 40.0% |
| !!! | AGGTTTTGGTTTTGGAGTAG+AGG | - | chr1_1:47263691-47263710 | None:intergenic | 40.0% |
| !!! | CTTGGTCTAGGTTTTGGTTT+TGG | - | chr1_1:47263699-47263718 | None:intergenic | 40.0% |
| ACACATAGGGTCTAAACCAA+AGG | - | chr1_1:47263782-47263801 | None:intergenic | 40.0% | |
| AGAAACATCCTTACCCATGT+CGG | + | chr1_1:47263804-47263823 | Msa0024620:CDS | 40.0% | |
| GAAAGAGCAAAATCCGACAT+GGG | - | chr1_1:47263820-47263839 | None:intergenic | 40.0% | |
| AGAAAGAGCAAAATCCGACA+TGG | - | chr1_1:47263821-47263840 | None:intergenic | 40.0% | |
| ATTATCAGCTGAAAGAGCCA+TGG | + | chr1_1:47263858-47263877 | Msa0024620:CDS | 40.0% | |
| ATCATCCTTATGCAATGGGT+AGG | + | chr1_1:47264400-47264419 | Msa0024620:intron | 40.0% | |
| TAGAGTTTAAGCCTCAAAGG+TGG | + | chr1_1:47264449-47264468 | Msa0024620:intron | 40.0% | |
| TTAGTCCAGGAGAGAATCTT+GGG | - | chr1_1:47264645-47264664 | None:intergenic | 40.0% | |
| !!! | CTAACTGCCACTTTTGCTTT+TGG | + | chr1_1:47264661-47264680 | Msa0024620:CDS | 40.0% |
| AGGAAGACCAAAAGCAAAAG+TGG | - | chr1_1:47264671-47264690 | None:intergenic | 40.0% | |
| AGCAAAATCCGACATGGGTA+AGG | - | chr1_1:47263815-47263834 | None:intergenic | 45.0% | |
| ! | ACTTGTGAGTGATGATGCCA+CGG | - | chr1_1:47264118-47264137 | None:intergenic | 45.0% |
| TCCTTATGCAATGGGTAGGT+TGG | + | chr1_1:47264404-47264423 | Msa0024620:intron | 45.0% | |
| TCCAACCTACCCATTGCATA+AGG | - | chr1_1:47264408-47264427 | None:intergenic | 45.0% | |
| ! | TTATGCAATGGGTAGGTTGG+AGG | + | chr1_1:47264407-47264426 | Msa0024620:intron | 45.0% |
| CCATCTTTCAACCACCTTTG+AGG | - | chr1_1:47264463-47264482 | None:intergenic | 45.0% | |
| CCTCAAAGGTGGTTGAAAGA+TGG | + | chr1_1:47264460-47264479 | Msa0024620:CDS | 45.0% | |
| GCTGGGTTAAGGGTTTGTAT+TGG | + | chr1_1:47264526-47264545 | Msa0024620:CDS | 45.0% | |
| GTTAGTCCAGGAGAGAATCT+TGG | - | chr1_1:47264646-47264665 | None:intergenic | 45.0% | |
| !! | CCTCTAGGACGAACAAATAC+AGG | - | chr1_1:47264691-47264710 | None:intergenic | 45.0% |
| CCTGTATTTGTTCGTCCTAG+AGG | + | chr1_1:47264688-47264707 | Msa0024620:CDS | 45.0% | |
| AGCAAAATCCGACATGGGTA+AGG | - | chr1_1:47263815-47263834 | None:intergenic | 45.0% | |
| ! | ACTTGTGAGTGATGATGCCA+CGG | - | chr1_1:47264118-47264137 | None:intergenic | 45.0% |
| TCCTTATGCAATGGGTAGGT+TGG | + | chr1_1:47264404-47264423 | Msa0024620:intron | 45.0% | |
| TCCAACCTACCCATTGCATA+AGG | - | chr1_1:47264408-47264427 | None:intergenic | 45.0% | |
| ! | TTATGCAATGGGTAGGTTGG+AGG | + | chr1_1:47264407-47264426 | Msa0024620:intron | 45.0% |
| CCATCTTTCAACCACCTTTG+AGG | - | chr1_1:47264463-47264482 | None:intergenic | 45.0% | |
| CCTCAAAGGTGGTTGAAAGA+TGG | + | chr1_1:47264460-47264479 | Msa0024620:CDS | 45.0% | |
| GCTGGGTTAAGGGTTTGTAT+TGG | + | chr1_1:47264526-47264545 | Msa0024620:CDS | 45.0% | |
| GTTAGTCCAGGAGAGAATCT+TGG | - | chr1_1:47264646-47264665 | None:intergenic | 45.0% | |
| !! | CCTCTAGGACGAACAAATAC+AGG | - | chr1_1:47264691-47264710 | None:intergenic | 45.0% |
| CCTGTATTTGTTCGTCCTAG+AGG | + | chr1_1:47264688-47264707 | Msa0024620:CDS | 45.0% | |
| GTAGAGGGATGAGTCGATGT+TGG | - | chr1_1:47263675-47263694 | None:intergenic | 50.0% | |
| ! | TGGGTAGGTTGGAGGAATTG+TGG | + | chr1_1:47264415-47264434 | Msa0024620:intron | 50.0% |
| ! | GGGTAGGTTGGAGGAATTGT+GGG | + | chr1_1:47264416-47264435 | Msa0024620:intron | 50.0% |
| ! | GGTAGGTTGGAGGAATTGTG+GGG | + | chr1_1:47264417-47264436 | Msa0024620:intron | 50.0% |
| GGTAACCCAAGATTCTCTCC+TGG | + | chr1_1:47264637-47264656 | Msa0024620:CDS | 50.0% | |
| GCAAAAGTGGCAGTTAGTCC+AGG | - | chr1_1:47264658-47264677 | None:intergenic | 50.0% | |
| GTAGAGGGATGAGTCGATGT+TGG | - | chr1_1:47263675-47263694 | None:intergenic | 50.0% | |
| ! | TGGGTAGGTTGGAGGAATTG+TGG | + | chr1_1:47264415-47264434 | Msa0024620:intron | 50.0% |
| ! | GGGTAGGTTGGAGGAATTGT+GGG | + | chr1_1:47264416-47264435 | Msa0024620:intron | 50.0% |
| ! | GGTAGGTTGGAGGAATTGTG+GGG | + | chr1_1:47264417-47264436 | Msa0024620:intron | 50.0% |
| GGTAACCCAAGATTCTCTCC+TGG | + | chr1_1:47264637-47264656 | Msa0024620:CDS | 50.0% | |
| GCAAAAGTGGCAGTTAGTCC+AGG | - | chr1_1:47264658-47264677 | None:intergenic | 50.0% | |
| ! | ATTGGCTGGTCGTGACACCG+TGG | + | chr1_1:47264098-47264117 | Msa0024620:CDS | 60.0% |
| ! | ATTGGCTGGTCGTGACACCG+TGG | + | chr1_1:47264098-47264117 | Msa0024620:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 47263604 | 47264720 | 47263604 | ID=Msa0024620;Name=Msa0024620 |
| chr1_1 | mRNA | 47263604 | 47264720 | 47263604 | ID=Msa0024620-mRNA-1;Parent=Msa0024620;Name=Msa0024620-mRNA-1;_AED=0.17;_eAED=0.25;_QI=0|0|0|1|1|1|2|0|343 |
| chr1_1 | exon | 47263604 | 47264366 | 47263604 | ID=Msa0024620-mRNA-1:exon:13433;Parent=Msa0024620-mRNA-1 |
| chr1_1 | exon | 47264452 | 47264720 | 47264452 | ID=Msa0024620-mRNA-1:exon:13434;Parent=Msa0024620-mRNA-1 |
| chr1_1 | CDS | 47263604 | 47264366 | 47263604 | ID=Msa0024620-mRNA-1:cds;Parent=Msa0024620-mRNA-1 |
| chr1_1 | CDS | 47264452 | 47264720 | 47264452 | ID=Msa0024620-mRNA-1:cds;Parent=Msa0024620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
