AlfalfaGEDB | Msa0943970

M. sativa cultivar zhongmu-4 / Msa0943970

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0943970	A0A072U8W6	84.211	95	8	1	25	119	1	88	8.77e-50	162

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005380	Msa0943970	0.812530	4.047309e-51	-8.615850e-47
Msa0007440	Msa0943970	0.802986	4.324542e-49	-8.615850e-47
Msa0010110	Msa0943970	0.810364	1.195766e-50	-8.615850e-47
Msa0020410	Msa0943970	0.806647	7.431732e-50	-8.615850e-47
Msa0023330	Msa0943970	0.814124	1.807090e-51	-8.615850e-47
Msa0024400	Msa0943970	0.837542	4.889505e-57	-8.615850e-47
Msa0024620	Msa0943970	0.801502	8.736042e-49	-8.615850e-47
Msa0026910	Msa0943970	0.804682	1.921110e-49	-8.615850e-47
Msa0027890	Msa0943970	0.803626	3.186136e-49	-8.615850e-47
Msa0030160	Msa0943970	0.802220	6.220296e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0943970	MtrunA17_Chr6g0460751	84.211	95	8	1	25	119	1	88	1.69e-53	162
Msa0943970	MtrunA17_Chr7g0254151	49.351	77	34	2	41	116	20	92	1.34e-14	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 29 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATAACCCAAAATCCCCT+GGG	0.609618	6_3:+20302755	Msa0943970:CDS
AACCCAAAATCCCCTGGGAG+TGG	0.548305	6_3:+20302760	Msa0943970:CDS
AATTAGAATCAAAGTATGTG+TGG	0.621826	6_3:+20302866	Msa0943970:three_prime_UTR
ACATATGGATGAAAGATTGA+TGG	0.490804	6_3:+20302678	Msa0943970:CDS
ATATTCTGGCGTACTATACT+AGG	0.411234	6_3:-20301626	None:intergenic
ATGAAAGATTGATGGGAAGA+AGG	0.472148	6_3:+20302686	Msa0943970:CDS
CAACCACTCCCAGGGGATTT+TGG	0.070443	6_3:-20302763	None:intergenic
CACCAGGCCCTTCATAATCA+TGG	0.396641	6_3:-20302723	None:intergenic
CATATGGATGAAAGATTGAT+GGG	0.518975	6_3:+20302679	Msa0943970:CDS
CCACTAACATATTAATATTC+TGG	0.317915	6_3:-20301640	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTAGGAACCAAAAATTTGAA+TGG	+	chr6_3:20301889-20301908	Msa0943970:intron	30.0%
GCACTAACCTTATATAAAGA+AGG	-	chr6_3:20301934-20301953	None:intergenic	30.0%
CCAATATCTAAGGAAAAATG+AGG	+	chr6_3:20302028-20302047	Msa0943970:intron	30.0%
GGAAAAAAGTGAGAAAATGA+TGG	+	chr6_3:20302654-20302673	Msa0943970:CDS	30.0%
TGAGAAAATGATGGTACATA+TGG	+	chr6_3:20302663-20302682	Msa0943970:CDS	30.0%
ACATATGGATGAAAGATTGA+TGG	+	chr6_3:20302678-20302697	Msa0943970:CDS	30.0%
CATATGGATGAAAGATTGAT+GGG	+	chr6_3:20302679-20302698	Msa0943970:CDS	30.0%
GTAGGAACCAAAAATTTGAA+TGG	+	chr6_3:20301889-20301908	Msa0943970:intron	30.0%
GCACTAACCTTATATAAAGA+AGG	-	chr6_3:20301934-20301953	None:intergenic	30.0%
CCAATATCTAAGGAAAAATG+AGG	+	chr6_3:20302028-20302047	Msa0943970:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	20301597	20303131	20301597	ID=Msa0943970;Name=Msa0943970
chr6_3	mRNA	20301597	20303131	20301597	ID=Msa0943970-mRNA-1;Parent=Msa0943970;Name=Msa0943970-mRNA-1;_AED=0.00;_eAED=0.00;_QI=56\|1\|1\|1\|1\|1\|3\|345\|119
chr6_3	exon	20301597	20301806	20301597	ID=Msa0943970-mRNA-1:exon:6030;Parent=Msa0943970-mRNA-1
chr6_3	exon	20301893	20301945	20301893	ID=Msa0943970-mRNA-1:exon:6031;Parent=Msa0943970-mRNA-1
chr6_3	exon	20302634	20303131	20302634	ID=Msa0943970-mRNA-1:exon:6032;Parent=Msa0943970-mRNA-1
chr6_3	five_prime_UTR	20301597	20301652	20301597	ID=Msa0943970-mRNA-1:five_prime_utr;Parent=Msa0943970-mRNA-1
chr6_3	CDS	20301653	20301806	20301653	ID=Msa0943970-mRNA-1:cds;Parent=Msa0943970-mRNA-1
chr6_3	CDS	20301893	20301945	20301893	ID=Msa0943970-mRNA-1:cds;Parent=Msa0943970-mRNA-1
chr6_3	CDS	20302634	20302786	20302634	ID=Msa0943970-mRNA-1:cds;Parent=Msa0943970-mRNA-1
chr6_3	three_prime_UTR	20302787	20303131	20302787	ID=Msa0943970-mRNA-1:three_prime_utr;Parent=Msa0943970-mRNA-1

Gene Sequence	>Msa0943970 ATGTTAGTGGCACTATATAACAAGCATAAAGTATTCATACATCCTTTGTTATCTTCCACCATCCAATTCAAGATGAAAAAAAACTTTTTCATACTTTTTGTGATACTTCTGAGTTTCTCATATATTCTCCATGTCTTTGCTATCCCTGCAACAAGAACCAAAAATTTGAATGGTGAAGATGAATCAGTTTTTCCTTCTTTATATAAGGAACATGGTTCATTGATGTTGGAAAAAAGTGAGAAAATGATGGTACATATGGATGAAAGATTGATGGGAAGAAGGGTCAATTTGGAACTCCATGATTATGAAGGGCCTGGTGCAAATAAAGAACATAACCCAAAATCCCCTGGGAGTGGTTGA
Protein sequence	>Msa0943970 MLVALYNKHKVFIHPLLSSTIQFKMKKNFFILFVILLSFSYILHVFAIPATRTKNLNGEDESVFPSLYKEHGSLMLEKSEKMMVHMDERLMGRRVNLELHDYEGPGANKEHNPKSPGSG*