Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025030 | sp|Q9LZR0|ATB51_ARATH | 48.529 | 204 | 87 | 6 | 1 | 186 | 1 | 204 | 5.18e-47 | 158 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0025030 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025030 | Msa0161970 | 0.927121 | 1.827060e-91 | -8.615850e-47 |
| Msa0025030 | Msa0782230 | 0.826060 | 3.338043e-54 | -8.615850e-47 |
| Msa0025030 | Msa1431280 | 0.954880 | 1.087310e-112 | -8.615850e-47 |
| Msa0025030 | Msa1431850 | 0.801007 | 1.103019e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025030 | MtrunA17_Chr7g0265521 | 56.327 | 245 | 82 | 11 | 1 | 233 | 1 | 232 | 1.78e-77 | 233 |
| Msa0025030 | MtrunA17_Chr1g0179581 | 97.297 | 111 | 2 | 1 | 32 | 142 | 1 | 110 | 7.94e-72 | 214 |
| Msa0025030 | MtrunA17_Chr1g0179591 | 90.625 | 96 | 9 | 0 | 138 | 233 | 34 | 129 | 8.92e-62 | 189 |
| Msa0025030 | MtrunA17_Chr6g0450991 | 55.882 | 102 | 38 | 1 | 59 | 153 | 66 | 167 | 1.89e-30 | 114 |
| Msa0025030 | MtrunA17_Chr6g0453021 | 55.670 | 97 | 43 | 0 | 54 | 150 | 90 | 186 | 1.09e-28 | 109 |
| Msa0025030 | MtrunA17_Chr4g0060031 | 49.580 | 119 | 53 | 1 | 49 | 160 | 84 | 202 | 1.26e-28 | 110 |
| Msa0025030 | MtrunA17_Chr8g0362151 | 55.670 | 97 | 36 | 1 | 57 | 146 | 74 | 170 | 3.52e-28 | 108 |
| Msa0025030 | MtrunA17_Chr3g0123691 | 38.764 | 178 | 87 | 5 | 55 | 221 | 55 | 221 | 4.54e-27 | 105 |
| Msa0025030 | MtrunA17_Chr5g0416391 | 56.180 | 89 | 39 | 0 | 59 | 147 | 76 | 164 | 1.18e-26 | 103 |
| Msa0025030 | MtrunA17_Chr3g0119291 | 42.953 | 149 | 80 | 3 | 59 | 207 | 58 | 201 | 3.61e-26 | 102 |
| Msa0025030 | MtrunA17_Chr8g0381741 | 39.355 | 155 | 81 | 4 | 48 | 189 | 39 | 193 | 5.24e-26 | 102 |
| Msa0025030 | MtrunA17_Chr5g0415941 | 58.427 | 89 | 37 | 0 | 58 | 146 | 85 | 173 | 1.09e-25 | 102 |
| Msa0025030 | MtrunA17_Chr8g0362751 | 53.608 | 97 | 38 | 1 | 60 | 149 | 89 | 185 | 3.80e-25 | 100 |
| Msa0025030 | MtrunA17_Chr3g0127511 | 49.038 | 104 | 45 | 2 | 62 | 158 | 40 | 142 | 8.70e-25 | 98.2 |
| Msa0025030 | MtrunA17_Chr7g0217111 | 54.639 | 97 | 37 | 1 | 58 | 147 | 78 | 174 | 1.14e-24 | 98.6 |
| Msa0025030 | MtrunA17_Chr8g0346251 | 41.538 | 130 | 57 | 3 | 64 | 183 | 45 | 165 | 5.95e-23 | 93.6 |
| Msa0025030 | MtrunA17_Chr5g0403701 | 43.396 | 106 | 60 | 0 | 55 | 160 | 48 | 153 | 9.80e-20 | 84.0 |
| Msa0025030 | MtrunA17_Chr4g0054421 | 48.315 | 89 | 46 | 0 | 60 | 148 | 127 | 215 | 7.01e-19 | 82.8 |
| Msa0025030 | MtrunA17_Chr7g0258831 | 45.161 | 93 | 51 | 0 | 60 | 152 | 160 | 252 | 1.54e-18 | 82.4 |
| Msa0025030 | MtrunA17_Chr4g0055851 | 46.067 | 89 | 48 | 0 | 60 | 148 | 120 | 208 | 1.57e-18 | 82.0 |
| Msa0025030 | MtrunA17_Chr1g0151971 | 43.119 | 109 | 55 | 2 | 47 | 148 | 110 | 218 | 4.60e-18 | 80.9 |
| Msa0025030 | MtrunA17_Chr1g0175651 | 44.944 | 89 | 49 | 0 | 60 | 148 | 154 | 242 | 1.36e-17 | 79.7 |
| Msa0025030 | MtrunA17_Chr5g0403691 | 41.593 | 113 | 59 | 1 | 55 | 160 | 48 | 160 | 2.22e-17 | 77.8 |
| Msa0025030 | MtrunA17_Chr5g0399491 | 47.191 | 89 | 47 | 0 | 60 | 148 | 136 | 224 | 2.68e-17 | 79.0 |
| Msa0025030 | MtrunA17_Chr8g0335131 | 46.067 | 89 | 48 | 0 | 60 | 148 | 146 | 234 | 6.57e-17 | 78.2 |
| Msa0025030 | MtrunA17_Chr4g0044091 | 38.931 | 131 | 69 | 2 | 55 | 184 | 60 | 180 | 8.63e-17 | 75.9 |
| Msa0025030 | MtrunA17_Chr2g0308611 | 43.820 | 89 | 50 | 0 | 60 | 148 | 200 | 288 | 9.72e-17 | 77.8 |
| Msa0025030 | MtrunA17_Chr4g0071411 | 45.349 | 86 | 47 | 0 | 63 | 148 | 91 | 176 | 3.25e-16 | 74.7 |
| Msa0025030 | MtrunA17_Chr5g0400781 | 43.820 | 89 | 50 | 0 | 60 | 148 | 123 | 211 | 8.67e-16 | 74.3 |
| Msa0025030 | MtrunA17_Chr3g0135331 | 43.820 | 89 | 50 | 0 | 60 | 148 | 145 | 233 | 2.55e-14 | 70.9 |
| Msa0025030 | MtrunA17_Chr2g0299031 | 42.697 | 89 | 51 | 0 | 60 | 148 | 82 | 170 | 2.87e-13 | 66.6 |
| Msa0025030 | MtrunA17_Chr2g0331581 | 39.024 | 82 | 50 | 0 | 63 | 144 | 145 | 226 | 3.41e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025030 | AT5G03790.1 | 48.529 | 204 | 87 | 6 | 1 | 186 | 1 | 204 | 5.26e-48 | 158 |
| Msa0025030 | AT5G03790.2 | 53.086 | 162 | 59 | 5 | 1 | 145 | 1 | 162 | 1.18e-41 | 140 |
| Msa0025030 | AT2G36610.1 | 48.603 | 179 | 66 | 7 | 7 | 162 | 5 | 180 | 1.67e-40 | 137 |
| Msa0025030 | AT4G40060.1 | 41.250 | 160 | 83 | 3 | 27 | 177 | 28 | 185 | 8.98e-31 | 115 |
| Msa0025030 | AT1G69780.1 | 44.755 | 143 | 66 | 1 | 57 | 199 | 82 | 211 | 5.25e-30 | 113 |
| Msa0025030 | AT5G15150.1 | 61.290 | 93 | 36 | 0 | 57 | 149 | 112 | 204 | 1.10e-28 | 110 |
| Msa0025030 | AT3G01470.1 | 37.059 | 170 | 97 | 2 | 57 | 219 | 65 | 231 | 1.93e-28 | 108 |
| Msa0025030 | AT5G65310.1 | 41.667 | 144 | 72 | 4 | 12 | 151 | 28 | 163 | 2.53e-28 | 109 |
| Msa0025030 | AT5G65310.2 | 41.667 | 144 | 72 | 4 | 12 | 151 | 10 | 145 | 2.62e-28 | 108 |
| Msa0025030 | AT2G22430.1 | 53.465 | 101 | 40 | 1 | 56 | 149 | 58 | 158 | 1.06e-27 | 107 |
| Msa0025030 | AT2G46680.1 | 49.541 | 109 | 48 | 1 | 45 | 146 | 17 | 125 | 2.09e-27 | 105 |
| Msa0025030 | AT2G46680.2 | 47.826 | 115 | 53 | 1 | 45 | 152 | 17 | 131 | 1.10e-26 | 103 |
| Msa0025030 | AT3G61890.1 | 39.264 | 163 | 70 | 3 | 63 | 214 | 33 | 177 | 1.41e-26 | 103 |
| Msa0025030 | AT3G01220.1 | 52.294 | 109 | 45 | 1 | 57 | 158 | 84 | 192 | 1.86e-26 | 103 |
| Msa0025030 | AT1G26960.1 | 42.958 | 142 | 60 | 3 | 57 | 193 | 68 | 193 | 2.90e-25 | 100 |
| Msa0025030 | AT2G18550.1 | 40.476 | 126 | 71 | 1 | 55 | 176 | 56 | 181 | 2.89e-24 | 96.7 |
| Msa0025030 | AT4G36740.2 | 50.526 | 95 | 47 | 0 | 55 | 149 | 51 | 145 | 7.20e-24 | 95.5 |
| Msa0025030 | AT4G36740.1 | 50.526 | 95 | 47 | 0 | 55 | 149 | 50 | 144 | 7.43e-24 | 95.5 |
| Msa0025030 | AT1G27045.1 | 48.039 | 102 | 46 | 1 | 60 | 154 | 68 | 169 | 2.11e-21 | 89.4 |
| Msa0025030 | AT1G27045.5 | 48.039 | 102 | 46 | 1 | 60 | 154 | 25 | 126 | 2.30e-21 | 88.2 |
| Msa0025030 | AT1G27045.3 | 48.039 | 102 | 46 | 1 | 60 | 154 | 25 | 126 | 2.30e-21 | 88.2 |
| Msa0025030 | AT5G66700.1 | 48.913 | 92 | 47 | 0 | 60 | 151 | 71 | 162 | 2.66e-21 | 89.0 |
| Msa0025030 | AT1G27045.2 | 48.039 | 102 | 46 | 1 | 60 | 154 | 17 | 118 | 2.73e-21 | 87.8 |
| Msa0025030 | AT1G27045.4 | 42.727 | 110 | 59 | 1 | 60 | 169 | 68 | 173 | 9.56e-20 | 85.5 |
| Msa0025030 | AT4G16780.1 | 43.617 | 94 | 53 | 0 | 55 | 148 | 124 | 217 | 1.38e-17 | 80.1 |
| Msa0025030 | AT5G53980.1 | 44.211 | 95 | 53 | 0 | 60 | 154 | 11 | 105 | 8.84e-17 | 75.1 |
| Msa0025030 | AT5G06710.1 | 44.944 | 89 | 49 | 0 | 60 | 148 | 190 | 278 | 1.00e-16 | 78.2 |
| Msa0025030 | AT2G01430.1 | 48.315 | 89 | 46 | 0 | 60 | 148 | 139 | 227 | 2.03e-16 | 76.6 |
| Msa0025030 | AT3G60390.1 | 46.067 | 89 | 48 | 0 | 60 | 148 | 162 | 250 | 2.17e-16 | 77.0 |
| Msa0025030 | AT4G17460.1 | 41.489 | 94 | 55 | 0 | 55 | 148 | 130 | 223 | 2.46e-16 | 76.6 |
| Msa0025030 | AT2G22800.1 | 42.553 | 94 | 54 | 0 | 55 | 148 | 108 | 201 | 3.08e-16 | 76.3 |
| Msa0025030 | AT4G37790.1 | 42.553 | 94 | 54 | 0 | 55 | 148 | 121 | 214 | 5.79e-16 | 75.5 |
| Msa0025030 | AT5G47370.1 | 31.973 | 147 | 91 | 2 | 11 | 148 | 72 | 218 | 8.60e-16 | 75.1 |
| Msa0025030 | AT2G44910.1 | 42.697 | 89 | 51 | 0 | 60 | 148 | 163 | 251 | 3.49e-15 | 73.6 |
| Msa0025030 | AT1G70920.2 | 41.489 | 94 | 55 | 0 | 55 | 148 | 34 | 127 | 1.59e-12 | 64.3 |
| Msa0025030 | AT1G70920.1 | 41.489 | 94 | 55 | 0 | 55 | 148 | 64 | 157 | 1.89e-12 | 64.7 |
| Msa0025030 | AT5G06710.4 | 53.846 | 52 | 24 | 0 | 60 | 111 | 190 | 241 | 1.23e-11 | 63.2 |
| Msa0025030 | AT2G01430.2 | 56.604 | 53 | 23 | 0 | 60 | 112 | 139 | 191 | 2.31e-11 | 61.6 |
Find 48 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCACCTAGCACGCCTATTT+TGG | 0.156053 | 1_1:-48052697 | None:intergenic |
| TTGCTATTTGGTTCCAAAAT+AGG | 0.158232 | 1_1:+48052684 | Msa0025030:CDS |
| AGCCTCGTCAAATTGCTATT+TGG | 0.235729 | 1_1:+48052672 | Msa0025030:CDS |
| CCTTGGACACAACCTCAAAT+TGG | 0.274196 | 1_1:-48052760 | None:intergenic |
| AAACTGTTGTTTCAATTTAG+AGG | 0.288321 | 1_1:+48054227 | Msa0025030:CDS |
| ATGAAGCTTTCCAAGGAGTT+AGG | 0.302805 | 1_1:+48052644 | Msa0025030:CDS |
| CTTTCCCTTCACCTCTCTGT+TGG | 0.348637 | 1_1:-48054175 | None:intergenic |
| GAAAGCTTCATCTTCCTTTG+AGG | 0.362313 | 1_1:-48052632 | None:intergenic |
| AATTAAGGGTGATAGTTATA+AGG | 0.365223 | 1_1:-48054303 | None:intergenic |
| AGATACAATGTTCCCAGAAA+TGG | 0.367312 | 1_1:+48052505 | Msa0025030:CDS |
| AAAGCTTCATCTTCCTTTGA+GGG | 0.383872 | 1_1:-48052631 | None:intergenic |
| AACAGTAGAAAGCACATTAG+AGG | 0.384105 | 1_1:+48054137 | Msa0025030:CDS |
| GCAGGCCAGTAGGGCAATAG+TGG | 0.385106 | 1_1:-48054273 | None:intergenic |
| GTAGTTGTAGAGGAAGCTTA+AGG | 0.434188 | 1_1:-48052075 | None:intergenic |
| GTGTTCCACTATTGCCCTAC+TGG | 0.465761 | 1_1:+48054268 | Msa0025030:CDS |
| TGAAGCTTTCCAAGGAGTTA+GGG | 0.476348 | 1_1:+48052645 | Msa0025030:CDS |
| CCAATTTGAGGTTGTGTCCA+AGG | 0.478928 | 1_1:+48052760 | Msa0025030:CDS |
| TGGAAGTGAAACAGCAAGAC+TGG | 0.490760 | 1_1:+48052480 | Msa0025030:CDS |
| ATACAAGTGTTCAAGTTGCT+TGG | 0.493063 | 1_1:-48052723 | None:intergenic |
| GGTACAGAAGCAGGCCAGTA+GGG | 0.495028 | 1_1:-48054282 | None:intergenic |
| AGGCTGTAGCCCTAACTCCT+TGG | 0.496406 | 1_1:-48052654 | None:intergenic |
| TGTTCAGGTTGTGAAGTTGA+AGG | 0.499837 | 1_1:+48054038 | Msa0025030:intron |
| TTTACTTAGACACCAATTTG+AGG | 0.500502 | 1_1:+48052748 | Msa0025030:CDS |
| GTGTGTTTGTTAAGGAATGA+TGG | 0.508746 | 1_1:+48052460 | Msa0025030:intron |
| GGTTCCAAAATAGGCGTGCT+AGG | 0.516451 | 1_1:+48052693 | Msa0025030:CDS |
| TACAACCAATGCTCATATCA+AGG | 0.516637 | 1_1:+48052095 | Msa0025030:CDS |
| TAGTTATAAGGTACAGAAGC+AGG | 0.517499 | 1_1:-48054291 | None:intergenic |
| CAACAGTTGAACATTGATGA+AGG | 0.518077 | 1_1:+48054204 | Msa0025030:CDS |
| AAAACAGCAGCTTCAGGATG+AGG | 0.518698 | 1_1:+48052784 | Msa0025030:CDS |
| AGCATTGGTTGTAGTTGTAG+AGG | 0.525273 | 1_1:-48052085 | None:intergenic |
| TAGATAATTATGGAATGGAA+TGG | 0.526946 | 1_1:+48052017 | None:intergenic |
| AACTCTTGTGGTAGAATGCA+AGG | 0.527714 | 1_1:+48054081 | Msa0025030:CDS |
| GAGTGAACAGATGGAATCAC+TGG | 0.535577 | 1_1:+48052577 | Msa0025030:CDS |
| AGGTACAGAAGCAGGCCAGT+AGG | 0.540474 | 1_1:-48054283 | None:intergenic |
| GCGATTAACGAGTGAACAGA+TGG | 0.542500 | 1_1:+48052568 | Msa0025030:CDS |
| ACAGATAGATAATTATGGAA+TGG | 0.549629 | 1_1:+48052012 | None:intergenic |
| CTTAAGGAAGACTCTGGTTG+AGG | 0.556116 | 1_1:-48052059 | None:intergenic |
| TTGCTCCAACAGAGAGGTGA+AGG | 0.556685 | 1_1:+48054170 | Msa0025030:CDS |
| AGATCAAACTAGACCCTCAA+AGG | 0.558248 | 1_1:+48052618 | Msa0025030:CDS |
| AAAGAACAAGGTAACTCTTG+TGG | 0.599344 | 1_1:+48054069 | Msa0025030:CDS |
| AGGAAGCTTAAGGAAGACTC+TGG | 0.609695 | 1_1:-48052065 | None:intergenic |
| AAGGAAGATGAAGCTTTCCA+AGG | 0.615641 | 1_1:+48052637 | Msa0025030:CDS |
| AAGGCTATGTTGAAAGAACA+AGG | 0.632753 | 1_1:+48054057 | Msa0025030:CDS |
| TCCAAAATAGGCGTGCTAGG+TGG | 0.637372 | 1_1:+48052696 | Msa0025030:CDS |
| TTACTATACAGAAATGTCAG+TGG | 0.650416 | 1_1:+48054104 | Msa0025030:CDS |
| TGCTCCAACAGAGAGGTGAA+GGG | 0.655501 | 1_1:+48054171 | Msa0025030:CDS |
| AACCAAATAGCAATTTGACG+AGG | 0.698239 | 1_1:-48052674 | None:intergenic |
| TCTACGTTGCTCCAACAGAG+AGG | 0.709736 | 1_1:+48054164 | Msa0025030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATCATAAGTTTAAATATA+GGG | - | chr1_1:48052216-48052235 | None:intergenic | 10.0% |
| !! | TTAATCATAAGTTTAAATAT+AGG | - | chr1_1:48052217-48052236 | None:intergenic | 10.0% |
| !!! | TGTTATTTTAAATAATCAAA+TGG | + | chr1_1:48053019-48053038 | Msa0025030:intron | 10.0% |
| !! | AGAGAAAAATAAATTATTTA+AGG | + | chr1_1:48053162-48053181 | Msa0025030:intron | 10.0% |
| !! | TAATCATAAGTTTAAATATA+GGG | - | chr1_1:48052216-48052235 | None:intergenic | 10.0% |
| !! | TTAATCATAAGTTTAAATAT+AGG | - | chr1_1:48052217-48052236 | None:intergenic | 10.0% |
| !!! | TGTTATTTTAAATAATCAAA+TGG | + | chr1_1:48053019-48053038 | Msa0025030:intron | 10.0% |
| !! | AGAGAAAAATAAATTATTTA+AGG | + | chr1_1:48053162-48053181 | Msa0025030:intron | 10.0% |
| !!! | TTTTTTTCTTCTTCTATATA+TGG | + | chr1_1:48052273-48052292 | Msa0025030:intron | 15.0% |
| !! | ACAATATTGTTTAAAAGTTT+AGG | - | chr1_1:48052440-48052459 | None:intergenic | 15.0% |
| !!! | ATAATTTATTTTTCTCTTCT+TGG | - | chr1_1:48053159-48053178 | None:intergenic | 15.0% |
| !! | TACGTAAAAAAAATCTAAAA+TGG | + | chr1_1:48053247-48053266 | Msa0025030:intron | 15.0% |
| !!! | GAAGTATATGTTTTTATTTT+CGG | + | chr1_1:48053354-48053373 | Msa0025030:intron | 15.0% |
| !!! | TCTTCTCTTATTTATATTAT+TGG | + | chr1_1:48053704-48053723 | Msa0025030:intron | 15.0% |
| !! | TATTAAATATTAAAGTAGCA+TGG | - | chr1_1:48053905-48053924 | None:intergenic | 15.0% |
| !! | AAAGTAAAATAGAGTTTAAT+TGG | + | chr1_1:48053934-48053953 | Msa0025030:intron | 15.0% |
| !!! | ATTTATATATGTAATTTGCA+TGG | - | chr1_1:48054007-48054026 | None:intergenic | 15.0% |
| !!! | TTTTTTTCTTCTTCTATATA+TGG | + | chr1_1:48052273-48052292 | Msa0025030:intron | 15.0% |
| !! | ACAATATTGTTTAAAAGTTT+AGG | - | chr1_1:48052440-48052459 | None:intergenic | 15.0% |
| !!! | ATAATTTATTTTTCTCTTCT+TGG | - | chr1_1:48053159-48053178 | None:intergenic | 15.0% |
| !! | TACGTAAAAAAAATCTAAAA+TGG | + | chr1_1:48053247-48053266 | Msa0025030:intron | 15.0% |
| !!! | GAAGTATATGTTTTTATTTT+CGG | + | chr1_1:48053354-48053373 | Msa0025030:intron | 15.0% |
| !!! | TCTTCTCTTATTTATATTAT+TGG | + | chr1_1:48053704-48053723 | Msa0025030:intron | 15.0% |
| !! | TATTAAATATTAAAGTAGCA+TGG | - | chr1_1:48053905-48053924 | None:intergenic | 15.0% |
| !! | AAAGTAAAATAGAGTTTAAT+TGG | + | chr1_1:48053934-48053953 | Msa0025030:intron | 15.0% |
| !!! | ATTTATATATGTAATTTGCA+TGG | - | chr1_1:48054007-48054026 | None:intergenic | 15.0% |
| !!! | ATTACATTCTAGAAGTTATT+AGG | - | chr1_1:48052186-48052205 | None:intergenic | 20.0% |
| !! | AGAAAAAAACTATATATGCA+TGG | - | chr1_1:48052262-48052281 | None:intergenic | 20.0% |
| !! | ATTCAAAATTTACGTATGTT+TGG | + | chr1_1:48052321-48052340 | Msa0025030:intron | 20.0% |
| !! | TCATTCTCATATATTATTAC+CGG | + | chr1_1:48052397-48052416 | Msa0025030:intron | 20.0% |
| !! | TAAATAGAGAAATACTTACA+TGG | - | chr1_1:48053089-48053108 | None:intergenic | 20.0% |
| !! | ATCGAAAACGTATAAATATA+TGG | + | chr1_1:48053207-48053226 | Msa0025030:intron | 20.0% |
| !!! | TAAATATATGGTGTTGATAT+TGG | + | chr1_1:48053219-48053238 | Msa0025030:intron | 20.0% |
| !!! | AAATATATGGTGTTGATATT+GGG | + | chr1_1:48053220-48053239 | Msa0025030:intron | 20.0% |
| !!! | TTATTTTGTCATAATCCTTA+CGG | + | chr1_1:48053281-48053300 | Msa0025030:intron | 20.0% |
| !! | TATATCAATGACTTATATTG+AGG | - | chr1_1:48053441-48053460 | None:intergenic | 20.0% |
| !!! | ATTACAATGTGTTATTTTAG+TGG | + | chr1_1:48053505-48053524 | Msa0025030:intron | 20.0% |
| !!! | ATTACATTCTAGAAGTTATT+AGG | - | chr1_1:48052186-48052205 | None:intergenic | 20.0% |
| !! | AGAAAAAAACTATATATGCA+TGG | - | chr1_1:48052262-48052281 | None:intergenic | 20.0% |
| !! | ATTCAAAATTTACGTATGTT+TGG | + | chr1_1:48052321-48052340 | Msa0025030:intron | 20.0% |
| !! | TCATTCTCATATATTATTAC+CGG | + | chr1_1:48052397-48052416 | Msa0025030:intron | 20.0% |
| !! | TAAATAGAGAAATACTTACA+TGG | - | chr1_1:48053089-48053108 | None:intergenic | 20.0% |
| !! | ATCGAAAACGTATAAATATA+TGG | + | chr1_1:48053207-48053226 | Msa0025030:intron | 20.0% |
| !!! | TAAATATATGGTGTTGATAT+TGG | + | chr1_1:48053219-48053238 | Msa0025030:intron | 20.0% |
| !!! | AAATATATGGTGTTGATATT+GGG | + | chr1_1:48053220-48053239 | Msa0025030:intron | 20.0% |
| !!! | TTATTTTGTCATAATCCTTA+CGG | + | chr1_1:48053281-48053300 | Msa0025030:intron | 20.0% |
| !! | TATATCAATGACTTATATTG+AGG | - | chr1_1:48053441-48053460 | None:intergenic | 20.0% |
| !!! | ATTACAATGTGTTATTTTAG+TGG | + | chr1_1:48053505-48053524 | Msa0025030:intron | 20.0% |
| ! | AAAAACTATATATGCATGGT+TGG | - | chr1_1:48052258-48052277 | None:intergenic | 25.0% |
| ! | TATATGGCATATATATAGCT+TGG | + | chr1_1:48052289-48052308 | Msa0025030:intron | 25.0% |
| !! | AATATTGTGTGTGTTTGTTA+AGG | + | chr1_1:48052452-48052471 | Msa0025030:intron | 25.0% |
| !!! | TCATCATTTTTTCCATTTCT+GGG | - | chr1_1:48052520-48052539 | None:intergenic | 25.0% |
| !!! | TTCATCATTTTTTCCATTTC+TGG | - | chr1_1:48052521-48052540 | None:intergenic | 25.0% |
| ! | ATGGAAAAAATGATGAAGTA+TGG | + | chr1_1:48052524-48052543 | Msa0025030:CDS | 25.0% |
| ! | TGGAAAAAATGATGAAGTAT+GGG | + | chr1_1:48052525-48052544 | Msa0025030:CDS | 25.0% |
| !!! | AAGCGCAAATAACTTTATTT+TGG | + | chr1_1:48052947-48052966 | Msa0025030:intron | 25.0% |
| ! | TTTACCTTCTCATTGAAATT+TGG | - | chr1_1:48053311-48053330 | None:intergenic | 25.0% |
| ! | AATGAAGGCAAAATATAGTT+TGG | + | chr1_1:48053384-48053403 | Msa0025030:intron | 25.0% |
| !! | GTAAGTTGGAGTAATATATT+TGG | - | chr1_1:48053414-48053433 | None:intergenic | 25.0% |
| ! | ATAAATTTATTCTAACGGTC+TGG | + | chr1_1:48053463-48053482 | Msa0025030:intron | 25.0% |
| !!! | TTATTTTAGTGGTGTAAGTT+GGG | + | chr1_1:48053516-48053535 | Msa0025030:intron | 25.0% |
| ! | TTTATGAGTTTATGGATTCA+CGG | - | chr1_1:48053672-48053691 | None:intergenic | 25.0% |
| ! | TGATCAACTTTATGAGTTTA+TGG | - | chr1_1:48053680-48053699 | None:intergenic | 25.0% |
| ! | ACACATACATACATACATAT+TGG | - | chr1_1:48053795-48053814 | None:intergenic | 25.0% |
| !!! | AAACTGTTGTTTCAATTTAG+AGG | + | chr1_1:48054227-48054246 | Msa0025030:CDS | 25.0% |
| ! | AAAAACTATATATGCATGGT+TGG | - | chr1_1:48052258-48052277 | None:intergenic | 25.0% |
| ! | TATATGGCATATATATAGCT+TGG | + | chr1_1:48052289-48052308 | Msa0025030:intron | 25.0% |
| !! | AATATTGTGTGTGTTTGTTA+AGG | + | chr1_1:48052452-48052471 | Msa0025030:intron | 25.0% |
| !!! | TCATCATTTTTTCCATTTCT+GGG | - | chr1_1:48052520-48052539 | None:intergenic | 25.0% |
| !!! | TTCATCATTTTTTCCATTTC+TGG | - | chr1_1:48052521-48052540 | None:intergenic | 25.0% |
| ! | ATGGAAAAAATGATGAAGTA+TGG | + | chr1_1:48052524-48052543 | Msa0025030:CDS | 25.0% |
| ! | TGGAAAAAATGATGAAGTAT+GGG | + | chr1_1:48052525-48052544 | Msa0025030:CDS | 25.0% |
| !!! | AAGCGCAAATAACTTTATTT+TGG | + | chr1_1:48052947-48052966 | Msa0025030:intron | 25.0% |
| ! | TTTACCTTCTCATTGAAATT+TGG | - | chr1_1:48053311-48053330 | None:intergenic | 25.0% |
| ! | AATGAAGGCAAAATATAGTT+TGG | + | chr1_1:48053384-48053403 | Msa0025030:intron | 25.0% |
| !! | GTAAGTTGGAGTAATATATT+TGG | - | chr1_1:48053414-48053433 | None:intergenic | 25.0% |
| ! | ATAAATTTATTCTAACGGTC+TGG | + | chr1_1:48053463-48053482 | Msa0025030:intron | 25.0% |
| !!! | TTATTTTAGTGGTGTAAGTT+GGG | + | chr1_1:48053516-48053535 | Msa0025030:intron | 25.0% |
| ! | TTTATGAGTTTATGGATTCA+CGG | - | chr1_1:48053672-48053691 | None:intergenic | 25.0% |
| ! | TGATCAACTTTATGAGTTTA+TGG | - | chr1_1:48053680-48053699 | None:intergenic | 25.0% |
| ! | ACACATACATACATACATAT+TGG | - | chr1_1:48053795-48053814 | None:intergenic | 25.0% |
| !!! | AAACTGTTGTTTCAATTTAG+AGG | + | chr1_1:48054227-48054246 | Msa0025030:CDS | 25.0% |
| ! | TTTTACCTTGATATGAGCAT+TGG | - | chr1_1:48052103-48052122 | None:intergenic | 30.0% |
| !! | TTGCTATTTGGTTCCAAAAT+AGG | + | chr1_1:48052684-48052703 | Msa0025030:CDS | 30.0% |
| TTTACTTAGACACCAATTTG+AGG | + | chr1_1:48052748-48052767 | Msa0025030:CDS | 30.0% | |
| GTCAATGAACAATACCTAAA+TGG | + | chr1_1:48052894-48052913 | Msa0025030:intron | 30.0% | |
| GAACAATACCTAAATGGTTA+CGG | + | chr1_1:48052900-48052919 | Msa0025030:intron | 30.0% | |
| AGTATTTGTGTGTGTCTAAA+TGG | + | chr1_1:48053044-48053063 | Msa0025030:intron | 30.0% | |
| ! | GTCTAAATGGATTTCATTTG+TGG | + | chr1_1:48053057-48053076 | Msa0025030:intron | 30.0% |
| TAGTCCAAATTTCAATGAGA+AGG | + | chr1_1:48053304-48053323 | Msa0025030:intron | 30.0% | |
| ! | ATTTTCGGTGAACTTAATGA+AGG | + | chr1_1:48053369-48053388 | Msa0025030:intron | 30.0% |
| AGTTGGAGTAATATATTTGG+TGG | - | chr1_1:48053411-48053430 | None:intergenic | 30.0% | |
| ATCAATGACTTATATTGAGG+TGG | - | chr1_1:48053438-48053457 | None:intergenic | 30.0% | |
| !!! | GTTATTTTAGTGGTGTAAGT+TGG | + | chr1_1:48053515-48053534 | Msa0025030:intron | 30.0% |
| !!! | TATTTTAGTGGTGTAAGTTG+GGG | + | chr1_1:48053517-48053536 | Msa0025030:intron | 30.0% |
| TGTCACCATGATTTCATTAA+GGG | - | chr1_1:48053574-48053593 | None:intergenic | 30.0% | |
| TTACTATACAGAAATGTCAG+TGG | + | chr1_1:48054104-48054123 | Msa0025030:CDS | 30.0% | |
| ! | TTTTACCTTGATATGAGCAT+TGG | - | chr1_1:48052103-48052122 | None:intergenic | 30.0% |
| !! | TTGCTATTTGGTTCCAAAAT+AGG | + | chr1_1:48052684-48052703 | Msa0025030:CDS | 30.0% |
| TTTACTTAGACACCAATTTG+AGG | + | chr1_1:48052748-48052767 | Msa0025030:CDS | 30.0% | |
| GTCAATGAACAATACCTAAA+TGG | + | chr1_1:48052894-48052913 | Msa0025030:intron | 30.0% | |
| GAACAATACCTAAATGGTTA+CGG | + | chr1_1:48052900-48052919 | Msa0025030:intron | 30.0% | |
| AGTATTTGTGTGTGTCTAAA+TGG | + | chr1_1:48053044-48053063 | Msa0025030:intron | 30.0% | |
| ! | GTCTAAATGGATTTCATTTG+TGG | + | chr1_1:48053057-48053076 | Msa0025030:intron | 30.0% |
| TAGTCCAAATTTCAATGAGA+AGG | + | chr1_1:48053304-48053323 | Msa0025030:intron | 30.0% | |
| ! | ATTTTCGGTGAACTTAATGA+AGG | + | chr1_1:48053369-48053388 | Msa0025030:intron | 30.0% |
| AGTTGGAGTAATATATTTGG+TGG | - | chr1_1:48053411-48053430 | None:intergenic | 30.0% | |
| ATCAATGACTTATATTGAGG+TGG | - | chr1_1:48053438-48053457 | None:intergenic | 30.0% | |
| !!! | GTTATTTTAGTGGTGTAAGT+TGG | + | chr1_1:48053515-48053534 | Msa0025030:intron | 30.0% |
| !!! | TATTTTAGTGGTGTAAGTTG+GGG | + | chr1_1:48053517-48053536 | Msa0025030:intron | 30.0% |
| TGTCACCATGATTTCATTAA+GGG | - | chr1_1:48053574-48053593 | None:intergenic | 30.0% | |
| TTACTATACAGAAATGTCAG+TGG | + | chr1_1:48054104-48054123 | Msa0025030:CDS | 30.0% | |
| TACAACCAATGCTCATATCA+AGG | + | chr1_1:48052095-48052114 | Msa0025030:CDS | 35.0% | |
| ACACACGTAACTACATACAA+TGG | + | chr1_1:48052371-48052390 | Msa0025030:intron | 35.0% | |
| TATTACCGGTGTCTACATAT+CGG | + | chr1_1:48052411-48052430 | Msa0025030:intron | 35.0% | |
| ! | GTGTGTTTGTTAAGGAATGA+TGG | + | chr1_1:48052460-48052479 | Msa0025030:intron | 35.0% |
| AGATACAATGTTCCCAGAAA+TGG | + | chr1_1:48052505-48052524 | Msa0025030:CDS | 35.0% | |
| AAAGCTTCATCTTCCTTTGA+GGG | - | chr1_1:48052634-48052653 | None:intergenic | 35.0% | |
| AACCAAATAGCAATTTGACG+AGG | - | chr1_1:48052677-48052696 | None:intergenic | 35.0% | |
| !! | ATACAAGTGTTCAAGTTGCT+TGG | - | chr1_1:48052726-48052745 | None:intergenic | 35.0% |
| !!! | TATTTTGGCGCATACACAAA+TGG | + | chr1_1:48052962-48052981 | Msa0025030:intron | 35.0% |
| CGTCTACACTTATTCGTATA+TGG | - | chr1_1:48053130-48053149 | None:intergenic | 35.0% | |
| ATACGAATAAGTGTAGACGT+CGG | + | chr1_1:48053131-48053150 | Msa0025030:intron | 35.0% | |
| TTGAAATTTGGACTACCGTA+AGG | - | chr1_1:48053299-48053318 | None:intergenic | 35.0% | |
| TATATTGAGGTGGTGTAAGT+TGG | - | chr1_1:48053428-48053447 | None:intergenic | 35.0% | |
| TGACACCCTTAATGAAATCA+TGG | + | chr1_1:48053566-48053585 | Msa0025030:intron | 35.0% | |
| GTGTCACCATGATTTCATTA+AGG | - | chr1_1:48053575-48053594 | None:intergenic | 35.0% | |
| !! | AAATTTGTTGTTCCCTGTTC+AGG | + | chr1_1:48054023-48054042 | Msa0025030:intron | 35.0% |
| AAGGCTATGTTGAAAGAACA+AGG | + | chr1_1:48054057-48054076 | Msa0025030:CDS | 35.0% | |
| AAAGAACAAGGTAACTCTTG+TGG | + | chr1_1:48054069-48054088 | Msa0025030:CDS | 35.0% | |
| ! | AACAGTAGAAAGCACATTAG+AGG | + | chr1_1:48054137-48054156 | Msa0025030:CDS | 35.0% |
| CAACAGTTGAACATTGATGA+AGG | + | chr1_1:48054204-48054223 | Msa0025030:CDS | 35.0% | |
| TAGTTATAAGGTACAGAAGC+AGG | - | chr1_1:48054294-48054313 | None:intergenic | 35.0% | |
| TACAACCAATGCTCATATCA+AGG | + | chr1_1:48052095-48052114 | Msa0025030:CDS | 35.0% | |
| ACACACGTAACTACATACAA+TGG | + | chr1_1:48052371-48052390 | Msa0025030:intron | 35.0% | |
| TATTACCGGTGTCTACATAT+CGG | + | chr1_1:48052411-48052430 | Msa0025030:intron | 35.0% | |
| ! | GTGTGTTTGTTAAGGAATGA+TGG | + | chr1_1:48052460-48052479 | Msa0025030:intron | 35.0% |
| AGATACAATGTTCCCAGAAA+TGG | + | chr1_1:48052505-48052524 | Msa0025030:CDS | 35.0% | |
| AAAGCTTCATCTTCCTTTGA+GGG | - | chr1_1:48052634-48052653 | None:intergenic | 35.0% | |
| AACCAAATAGCAATTTGACG+AGG | - | chr1_1:48052677-48052696 | None:intergenic | 35.0% | |
| !! | ATACAAGTGTTCAAGTTGCT+TGG | - | chr1_1:48052726-48052745 | None:intergenic | 35.0% |
| !!! | TATTTTGGCGCATACACAAA+TGG | + | chr1_1:48052962-48052981 | Msa0025030:intron | 35.0% |
| CGTCTACACTTATTCGTATA+TGG | - | chr1_1:48053130-48053149 | None:intergenic | 35.0% | |
| ATACGAATAAGTGTAGACGT+CGG | + | chr1_1:48053131-48053150 | Msa0025030:intron | 35.0% | |
| TTGAAATTTGGACTACCGTA+AGG | - | chr1_1:48053299-48053318 | None:intergenic | 35.0% | |
| TATATTGAGGTGGTGTAAGT+TGG | - | chr1_1:48053428-48053447 | None:intergenic | 35.0% | |
| TGACACCCTTAATGAAATCA+TGG | + | chr1_1:48053566-48053585 | Msa0025030:intron | 35.0% | |
| GTGTCACCATGATTTCATTA+AGG | - | chr1_1:48053575-48053594 | None:intergenic | 35.0% | |
| !! | AAATTTGTTGTTCCCTGTTC+AGG | + | chr1_1:48054023-48054042 | Msa0025030:intron | 35.0% |
| AAGGCTATGTTGAAAGAACA+AGG | + | chr1_1:48054057-48054076 | Msa0025030:CDS | 35.0% | |
| AAAGAACAAGGTAACTCTTG+TGG | + | chr1_1:48054069-48054088 | Msa0025030:CDS | 35.0% | |
| ! | AACAGTAGAAAGCACATTAG+AGG | + | chr1_1:48054137-48054156 | Msa0025030:CDS | 35.0% |
| CAACAGTTGAACATTGATGA+AGG | + | chr1_1:48054204-48054223 | Msa0025030:CDS | 35.0% | |
| TAGTTATAAGGTACAGAAGC+AGG | - | chr1_1:48054294-48054313 | None:intergenic | 35.0% | |
| GTAGTTGTAGAGGAAGCTTA+AGG | - | chr1_1:48052078-48052097 | None:intergenic | 40.0% | |
| !! | AGCATTGGTTGTAGTTGTAG+AGG | - | chr1_1:48052088-48052107 | None:intergenic | 40.0% |
| ! | TACGTGTGTCGATATCATGT+TGG | - | chr1_1:48052360-48052379 | None:intergenic | 40.0% |
| !! | ACTGGAGAGTAGTTTTCAAG+AGG | + | chr1_1:48052595-48052614 | Msa0025030:CDS | 40.0% |
| AGATCAAACTAGACCCTCAA+AGG | + | chr1_1:48052618-48052637 | Msa0025030:CDS | 40.0% | |
| GAAAGCTTCATCTTCCTTTG+AGG | - | chr1_1:48052635-48052654 | None:intergenic | 40.0% | |
| AAGGAAGATGAAGCTTTCCA+AGG | + | chr1_1:48052637-48052656 | Msa0025030:CDS | 40.0% | |
| ATGAAGCTTTCCAAGGAGTT+AGG | + | chr1_1:48052644-48052663 | Msa0025030:CDS | 40.0% | |
| TGAAGCTTTCCAAGGAGTTA+GGG | + | chr1_1:48052645-48052664 | Msa0025030:CDS | 40.0% | |
| ! | AGCCTCGTCAAATTGCTATT+TGG | + | chr1_1:48052672-48052691 | Msa0025030:CDS | 40.0% |
| TAACACAGCCGTAACCATTT+AGG | - | chr1_1:48052911-48052930 | None:intergenic | 40.0% | |
| !! | ACGGCTGTGTTATTTAGATG+AGG | + | chr1_1:48052919-48052938 | Msa0025030:intron | 40.0% |
| !! | CGGCTGTGTTATTTAGATGA+GGG | + | chr1_1:48052920-48052939 | Msa0025030:intron | 40.0% |
| ! | GTAAGTTGGGGCATTCTATT+TGG | + | chr1_1:48053529-48053548 | Msa0025030:intron | 40.0% |
| CGAACGCGTAACTAAAATCA+TGG | + | chr1_1:48053613-48053632 | Msa0025030:intron | 40.0% | |
| ! | CCATGTCTCTTTTGTAGACA+CGG | + | chr1_1:48053765-48053784 | Msa0025030:intron | 40.0% |
| GAAACAAAGTTGCAGTGCTA+TGG | - | chr1_1:48053831-48053850 | None:intergenic | 40.0% | |
| TCAACTTCACAACCTGAACA+GGG | - | chr1_1:48054038-48054057 | None:intergenic | 40.0% | |
| TTCAACTTCACAACCTGAAC+AGG | - | chr1_1:48054039-48054058 | None:intergenic | 40.0% | |
| !! | TGTTCAGGTTGTGAAGTTGA+AGG | + | chr1_1:48054038-48054057 | Msa0025030:intron | 40.0% |
| AACTCTTGTGGTAGAATGCA+AGG | + | chr1_1:48054081-48054100 | Msa0025030:CDS | 40.0% | |
| GTAGTTGTAGAGGAAGCTTA+AGG | - | chr1_1:48052078-48052097 | None:intergenic | 40.0% | |
| !! | AGCATTGGTTGTAGTTGTAG+AGG | - | chr1_1:48052088-48052107 | None:intergenic | 40.0% |
| ! | TACGTGTGTCGATATCATGT+TGG | - | chr1_1:48052360-48052379 | None:intergenic | 40.0% |
| !! | ACTGGAGAGTAGTTTTCAAG+AGG | + | chr1_1:48052595-48052614 | Msa0025030:CDS | 40.0% |
| AGATCAAACTAGACCCTCAA+AGG | + | chr1_1:48052618-48052637 | Msa0025030:CDS | 40.0% | |
| GAAAGCTTCATCTTCCTTTG+AGG | - | chr1_1:48052635-48052654 | None:intergenic | 40.0% | |
| AAGGAAGATGAAGCTTTCCA+AGG | + | chr1_1:48052637-48052656 | Msa0025030:CDS | 40.0% | |
| ATGAAGCTTTCCAAGGAGTT+AGG | + | chr1_1:48052644-48052663 | Msa0025030:CDS | 40.0% | |
| TGAAGCTTTCCAAGGAGTTA+GGG | + | chr1_1:48052645-48052664 | Msa0025030:CDS | 40.0% | |
| ! | AGCCTCGTCAAATTGCTATT+TGG | + | chr1_1:48052672-48052691 | Msa0025030:CDS | 40.0% |
| TAACACAGCCGTAACCATTT+AGG | - | chr1_1:48052911-48052930 | None:intergenic | 40.0% | |
| !! | ACGGCTGTGTTATTTAGATG+AGG | + | chr1_1:48052919-48052938 | Msa0025030:intron | 40.0% |
| !! | CGGCTGTGTTATTTAGATGA+GGG | + | chr1_1:48052920-48052939 | Msa0025030:intron | 40.0% |
| ! | GTAAGTTGGGGCATTCTATT+TGG | + | chr1_1:48053529-48053548 | Msa0025030:intron | 40.0% |
| CGAACGCGTAACTAAAATCA+TGG | + | chr1_1:48053613-48053632 | Msa0025030:intron | 40.0% | |
| ! | CCATGTCTCTTTTGTAGACA+CGG | + | chr1_1:48053765-48053784 | Msa0025030:intron | 40.0% |
| GAAACAAAGTTGCAGTGCTA+TGG | - | chr1_1:48053831-48053850 | None:intergenic | 40.0% | |
| TCAACTTCACAACCTGAACA+GGG | - | chr1_1:48054038-48054057 | None:intergenic | 40.0% | |
| TTCAACTTCACAACCTGAAC+AGG | - | chr1_1:48054039-48054058 | None:intergenic | 40.0% | |
| !! | TGTTCAGGTTGTGAAGTTGA+AGG | + | chr1_1:48054038-48054057 | Msa0025030:intron | 40.0% |
| AACTCTTGTGGTAGAATGCA+AGG | + | chr1_1:48054081-48054100 | Msa0025030:CDS | 40.0% | |
| CTTAAGGAAGACTCTGGTTG+AGG | - | chr1_1:48052062-48052081 | None:intergenic | 45.0% | |
| AGGAAGCTTAAGGAAGACTC+TGG | - | chr1_1:48052068-48052087 | None:intergenic | 45.0% | |
| TGGAAGTGAAACAGCAAGAC+TGG | + | chr1_1:48052480-48052499 | Msa0025030:CDS | 45.0% | |
| GCGATTAACGAGTGAACAGA+TGG | + | chr1_1:48052568-48052587 | Msa0025030:CDS | 45.0% | |
| GAGTGAACAGATGGAATCAC+TGG | + | chr1_1:48052577-48052596 | Msa0025030:CDS | 45.0% | |
| CCTTGGACACAACCTCAAAT+TGG | - | chr1_1:48052763-48052782 | None:intergenic | 45.0% | |
| ! | CCAATTTGAGGTTGTGTCCA+AGG | + | chr1_1:48052760-48052779 | Msa0025030:CDS | 45.0% |
| !!! | CTGAAGCTGCTGTTTTTCCT+TGG | - | chr1_1:48052780-48052799 | None:intergenic | 45.0% |
| CAAGGAAAAACAGCAGCTTC+AGG | + | chr1_1:48052778-48052797 | Msa0025030:CDS | 45.0% | |
| AAAACAGCAGCTTCAGGATG+AGG | + | chr1_1:48052784-48052803 | Msa0025030:CDS | 45.0% | |
| ! | AGTTGGGGCATTCTATTTGG+TGG | + | chr1_1:48053532-48053551 | Msa0025030:intron | 45.0% |
| CCGTGTCTACAAAAGAGACA+TGG | - | chr1_1:48053768-48053787 | None:intergenic | 45.0% | |
| CTTAAGGAAGACTCTGGTTG+AGG | - | chr1_1:48052062-48052081 | None:intergenic | 45.0% | |
| AGGAAGCTTAAGGAAGACTC+TGG | - | chr1_1:48052068-48052087 | None:intergenic | 45.0% | |
| TGGAAGTGAAACAGCAAGAC+TGG | + | chr1_1:48052480-48052499 | Msa0025030:CDS | 45.0% | |
| GCGATTAACGAGTGAACAGA+TGG | + | chr1_1:48052568-48052587 | Msa0025030:CDS | 45.0% | |
| GAGTGAACAGATGGAATCAC+TGG | + | chr1_1:48052577-48052596 | Msa0025030:CDS | 45.0% | |
| CCTTGGACACAACCTCAAAT+TGG | - | chr1_1:48052763-48052782 | None:intergenic | 45.0% | |
| ! | CCAATTTGAGGTTGTGTCCA+AGG | + | chr1_1:48052760-48052779 | Msa0025030:CDS | 45.0% |
| !!! | CTGAAGCTGCTGTTTTTCCT+TGG | - | chr1_1:48052780-48052799 | None:intergenic | 45.0% |
| CAAGGAAAAACAGCAGCTTC+AGG | + | chr1_1:48052778-48052797 | Msa0025030:CDS | 45.0% | |
| AAAACAGCAGCTTCAGGATG+AGG | + | chr1_1:48052784-48052803 | Msa0025030:CDS | 45.0% | |
| ! | AGTTGGGGCATTCTATTTGG+TGG | + | chr1_1:48053532-48053551 | Msa0025030:intron | 45.0% |
| CCGTGTCTACAAAAGAGACA+TGG | - | chr1_1:48053768-48053787 | None:intergenic | 45.0% | |
| !! | ATATTATAAATTTATTCTAA+CGG | + | chr1_1:48053458-48053477 | Msa0025030:intron | 5.0% |
| !! | ATATTATAAATTTATTCTAA+CGG | + | chr1_1:48053458-48053477 | Msa0025030:intron | 5.0% |
| GGACACCGATATGTAGACAC+CGG | - | chr1_1:48052419-48052438 | None:intergenic | 50.0% | |
| GGTTCCAAAATAGGCGTGCT+AGG | + | chr1_1:48052693-48052712 | Msa0025030:CDS | 50.0% | |
| TCCAAAATAGGCGTGCTAGG+TGG | + | chr1_1:48052696-48052715 | Msa0025030:CDS | 50.0% | |
| ! | TCCACCTAGCACGCCTATTT+TGG | - | chr1_1:48052700-48052719 | None:intergenic | 50.0% |
| TCTACGTTGCTCCAACAGAG+AGG | + | chr1_1:48054164-48054183 | Msa0025030:CDS | 50.0% | |
| TTGCTCCAACAGAGAGGTGA+AGG | + | chr1_1:48054170-48054189 | Msa0025030:CDS | 50.0% | |
| TGCTCCAACAGAGAGGTGAA+GGG | + | chr1_1:48054171-48054190 | Msa0025030:CDS | 50.0% | |
| CTTTCCCTTCACCTCTCTGT+TGG | - | chr1_1:48054178-48054197 | None:intergenic | 50.0% | |
| GTGTTCCACTATTGCCCTAC+TGG | + | chr1_1:48054268-48054287 | Msa0025030:CDS | 50.0% | |
| GGACACCGATATGTAGACAC+CGG | - | chr1_1:48052419-48052438 | None:intergenic | 50.0% | |
| GGTTCCAAAATAGGCGTGCT+AGG | + | chr1_1:48052693-48052712 | Msa0025030:CDS | 50.0% | |
| TCCAAAATAGGCGTGCTAGG+TGG | + | chr1_1:48052696-48052715 | Msa0025030:CDS | 50.0% | |
| ! | TCCACCTAGCACGCCTATTT+TGG | - | chr1_1:48052700-48052719 | None:intergenic | 50.0% |
| TCTACGTTGCTCCAACAGAG+AGG | + | chr1_1:48054164-48054183 | Msa0025030:CDS | 50.0% | |
| TTGCTCCAACAGAGAGGTGA+AGG | + | chr1_1:48054170-48054189 | Msa0025030:CDS | 50.0% | |
| TGCTCCAACAGAGAGGTGAA+GGG | + | chr1_1:48054171-48054190 | Msa0025030:CDS | 50.0% | |
| CTTTCCCTTCACCTCTCTGT+TGG | - | chr1_1:48054178-48054197 | None:intergenic | 50.0% | |
| GTGTTCCACTATTGCCCTAC+TGG | + | chr1_1:48054268-48054287 | Msa0025030:CDS | 50.0% | |
| AGGCTGTAGCCCTAACTCCT+TGG | - | chr1_1:48052657-48052676 | None:intergenic | 55.0% | |
| GGTACAGAAGCAGGCCAGTA+GGG | - | chr1_1:48054285-48054304 | None:intergenic | 55.0% | |
| AGGTACAGAAGCAGGCCAGT+AGG | - | chr1_1:48054286-48054305 | None:intergenic | 55.0% | |
| AGGCTGTAGCCCTAACTCCT+TGG | - | chr1_1:48052657-48052676 | None:intergenic | 55.0% | |
| GGTACAGAAGCAGGCCAGTA+GGG | - | chr1_1:48054285-48054304 | None:intergenic | 55.0% | |
| AGGTACAGAAGCAGGCCAGT+AGG | - | chr1_1:48054286-48054305 | None:intergenic | 55.0% | |
| GCAGGCCAGTAGGGCAATAG+TGG | - | chr1_1:48054276-48054295 | None:intergenic | 60.0% | |
| GCAGGCCAGTAGGGCAATAG+TGG | - | chr1_1:48054276-48054295 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 48052026 | 48054323 | 48052026 | ID=Msa0025030;Name=Msa0025030 |
| chr1_1 | mRNA | 48052026 | 48054323 | 48052026 | ID=Msa0025030-mRNA-1;Parent=Msa0025030;Name=Msa0025030-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|233 |
| chr1_1 | exon | 48052026 | 48052116 | 48052026 | ID=Msa0025030-mRNA-1:exon:13710;Parent=Msa0025030-mRNA-1 |
| chr1_1 | exon | 48052474 | 48052805 | 48052474 | ID=Msa0025030-mRNA-1:exon:13711;Parent=Msa0025030-mRNA-1 |
| chr1_1 | exon | 48054045 | 48054323 | 48054045 | ID=Msa0025030-mRNA-1:exon:13712;Parent=Msa0025030-mRNA-1 |
| chr1_1 | CDS | 48052026 | 48052116 | 48052026 | ID=Msa0025030-mRNA-1:cds;Parent=Msa0025030-mRNA-1 |
| chr1_1 | CDS | 48052474 | 48052805 | 48052474 | ID=Msa0025030-mRNA-1:cds;Parent=Msa0025030-mRNA-1 |
| chr1_1 | CDS | 48054045 | 48054323 | 48054045 | ID=Msa0025030-mRNA-1:cds;Parent=Msa0025030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
