Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025670 | sp|F4KFB3|PTST3_ARATH | 36.617 | 609 | 305 | 17 | 45 | 625 | 41 | 596 | 7.82e-95 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025670 | Msa0166050 | 0.837287 | 5.681944e-57 | -8.615850e-47 |
| Msa0025670 | Msa0719490 | -0.803295 | 3.731174e-49 | -8.615850e-47 |
| Msa0025670 | Msa0769390 | 0.807163 | 5.780448e-50 | -8.615850e-47 |
| Msa0025670 | Msa0789690 | 0.809214 | 2.113148e-50 | -8.615850e-47 |
| Msa0025670 | Msa0968320 | -0.820886 | 5.410769e-53 | -8.615850e-47 |
| Msa0025670 | Msa1028570 | -0.809322 | 2.003770e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025670 | MtrunA17_Chr1g0180511 | 91.627 | 633 | 35 | 6 | 1 | 626 | 1 | 622 | 0.0 | 1149 |
| Msa0025670 | MtrunA17_Chr5g0415861 | 34.615 | 130 | 73 | 2 | 480 | 609 | 389 | 506 | 8.73e-13 | 71.2 |
| Msa0025670 | MtrunA17_Chr3g0110931 | 33.155 | 187 | 85 | 9 | 462 | 625 | 131 | 300 | 3.81e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025670 | AT5G03420.1 | 36.617 | 609 | 305 | 17 | 45 | 625 | 41 | 596 | 7.95e-96 | 306 |
| Msa0025670 | AT1G27070.1 | 31.469 | 143 | 86 | 1 | 480 | 622 | 399 | 529 | 8.11e-14 | 74.7 |
| Msa0025670 | AT5G39790.1 | 31.088 | 193 | 96 | 8 | 457 | 625 | 94 | 273 | 8.00e-12 | 66.6 |
| Msa0025670 | AT5G39790.3 | 33.621 | 116 | 63 | 3 | 515 | 625 | 174 | 280 | 5.23e-11 | 64.3 |
Find 191 sgRNAs with CRISPR-Local
Find 634 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTGAGGATCCATCTTTAT+TGG | 0.210353 | 1_1:+49027069 | None:intergenic |
| GAGGCTGAAGAAAGTCTTTC+AGG | 0.211074 | 1_1:-49027679 | Msa0025670:CDS |
| TACCCAGGAAATCAAGATTT+TGG | 0.263422 | 1_1:-49026667 | Msa0025670:intron |
| TCCTTGTCAAAATGAGTAAT+TGG | 0.264078 | 1_1:+49030598 | None:intergenic |
| TATAGTAGTAGTGGTGTAAA+TGG | 0.271902 | 1_1:-49034583 | Msa0025670:exon |
| AGAATGCGATGACGCTTTAA+TGG | 0.274132 | 1_1:-49032611 | Msa0025670:CDS |
| CACTTCATTCAACTTGTCTA+TGG | 0.293386 | 1_1:-49032299 | Msa0025670:CDS |
| CCGTGTGGTTGTGGTGGTTT+TGG | 0.307864 | 1_1:+49034413 | None:intergenic |
| GGAGAAAACGATTGCTTCAT+TGG | 0.317853 | 1_1:-49025555 | Msa0025670:three_prime_UTR |
| CCACCATCGCTGTATCTATT+AGG | 0.317864 | 1_1:-49025576 | Msa0025670:three_prime_UTR |
| AACAATGCCATGGCACATAA+TGG | 0.319841 | 1_1:-49030812 | Msa0025670:CDS |
| GGTATCAACTGAATTTCTTC+AGG | 0.320026 | 1_1:-49032932 | Msa0025670:CDS |
| TAGATAAAATTTGTTGTTGA+TGG | 0.320425 | 1_1:-49026447 | Msa0025670:CDS |
| CAGAGATGTGTGAAGCAGTT+TGG | 0.333304 | 1_1:+49034531 | None:intergenic |
| CCTATCATTCATCCTTGTCC+TGG | 0.345357 | 1_1:-49034652 | None:intergenic |
| TCCATGCCAACAGAAATTTC+TGG | 0.345810 | 1_1:-49032670 | Msa0025670:CDS |
| GAAAGTTGGACCAGCCTCTT+TGG | 0.349591 | 1_1:-49030754 | Msa0025670:intron |
| ATTGAGGATCCATCTTTATT+GGG | 0.352743 | 1_1:+49027070 | None:intergenic |
| ACCACTGTGGATAATGATTT+AGG | 0.354121 | 1_1:-49032736 | Msa0025670:CDS |
| GAAAGGATTAGTTTATGATT+AGG | 0.356681 | 1_1:-49025687 | Msa0025670:three_prime_UTR |
| TACATAGGAATTGAAGATAA+TGG | 0.357393 | 1_1:-49025910 | Msa0025670:three_prime_UTR |
| CTAGCTACTGACTCCCTTTG+TGG | 0.358855 | 1_1:+49026408 | None:intergenic |
| AACATTGATTCTTTAGAAAC+GGG | 0.360442 | 1_1:-49033138 | Msa0025670:CDS |
| AGTGAGAGGGAGAGAAATAG+TGG | 0.365796 | 1_1:+49034455 | None:intergenic |
| ATATTAGACTTACCTTCAAC+TGG | 0.371243 | 1_1:+49032235 | None:intergenic |
| AGAGATGTGTGAAGCAGTTT+GGG | 0.371482 | 1_1:+49034532 | None:intergenic |
| AGAGAAAGAGTTCAGTCGTT+TGG | 0.375021 | 1_1:-49032494 | Msa0025670:CDS |
| GCTGATTTCTTCCTCTGCCT+TGG | 0.376594 | 1_1:+49027744 | None:intergenic |
| TTAGGAGAAAATAAACAATT+AGG | 0.377868 | 1_1:-49025669 | Msa0025670:three_prime_UTR |
| TCCAATCAAGTTGTTCCATC+TGG | 0.387208 | 1_1:-49030776 | Msa0025670:CDS |
| GAGACAGTTCCAACTCCTTC+TGG | 0.394600 | 1_1:+49029105 | None:intergenic |
| AGTAGATAGATGATGCATTC+TGG | 0.398258 | 1_1:-49026358 | Msa0025670:exon |
| GAATGCGATGACGCTTTAAT+GGG | 0.407613 | 1_1:-49032610 | Msa0025670:CDS |
| CAACATTGATTCTTTAGAAA+CGG | 0.409475 | 1_1:-49033139 | Msa0025670:CDS |
| ATTTAAATGTGCATACTAGA+TGG | 0.410241 | 1_1:+49025785 | None:intergenic |
| TCCAGATGGAACAACTTGAT+TGG | 0.410526 | 1_1:+49030775 | None:intergenic |
| TTCTCTCTATTGTCAACATC+AGG | 0.412640 | 1_1:+49032511 | None:intergenic |
| AAACTCAGAGCCAGAGGTTG+TGG | 0.414256 | 1_1:+49032381 | None:intergenic |
| TTTCTGTTGGCATGGAACTT+TGG | 0.418429 | 1_1:+49032677 | None:intergenic |
| TACTTTCAGCTCAGCTGAAA+AGG | 0.420378 | 1_1:+49034626 | None:intergenic |
| CGTCAATTTCTCGACGAAGT+TGG | 0.426510 | 1_1:-49034230 | Msa0025670:CDS |
| ACAATGCCATGGCACATAAT+GGG | 0.428974 | 1_1:-49030811 | Msa0025670:CDS |
| GAGGTGGCTGGTAGCTTCAA+TGG | 0.431007 | 1_1:-49027102 | Msa0025670:CDS |
| ATGAAAGAACGACATTTAGA+TGG | 0.440490 | 1_1:-49025822 | Msa0025670:three_prime_UTR |
| TGATTTGTCCATAGAGCAAA+AGG | 0.443744 | 1_1:-49032461 | Msa0025670:CDS |
| GCCATGGCATTGTTATCTTC+AGG | 0.448831 | 1_1:+49030821 | None:intergenic |
| GATATTGAGGTTCTATCAAC+AGG | 0.455374 | 1_1:-49033081 | Msa0025670:intron |
| AAAATATCCGAGGATTCTAC+AGG | 0.459760 | 1_1:+49032847 | None:intergenic |
| AGAACAGATTGAGAAGGAAA+AGG | 0.463574 | 1_1:-49029075 | Msa0025670:intron |
| TCCGTGGAAGGAACTGTCAA+TGG | 0.466430 | 1_1:+49032562 | None:intergenic |
| AGTTGTTCCATCTGGAAAGT+TGG | 0.466950 | 1_1:-49030768 | Msa0025670:CDS |
| TATGCACTTGTTGTTGGTGT+TGG | 0.468497 | 1_1:+49034500 | None:intergenic |
| TTTAGAACCTTGATCCATCA+TGG | 0.470651 | 1_1:+49027028 | None:intergenic |
| GAACTTTGGCTATCAAAGTT+CGG | 0.471263 | 1_1:+49032691 | None:intergenic |
| AGAGAATATGCACTTGTTGT+TGG | 0.473316 | 1_1:+49034494 | None:intergenic |
| GTCCATAGAGCAAAAGGACT+GGG | 0.475132 | 1_1:-49032455 | Msa0025670:CDS |
| TCCGTCTGACAATGTTTGCC+AGG | 0.475420 | 1_1:+49033208 | None:intergenic |
| GCGGTGCTGTGGCTTTATCC+TGG | 0.477203 | 1_1:-49026641 | Msa0025670:CDS |
| CTATCATTCATCCTTGTCCT+GGG | 0.478875 | 1_1:-49034651 | None:intergenic |
| ACCAGAAATTTCTGTTGGCA+TGG | 0.480364 | 1_1:+49032669 | None:intergenic |
| CAGGTTCTTGTTGAATTCTG+TGG | 0.486855 | 1_1:-49027141 | Msa0025670:CDS |
| GATGATGTTCCCACAACCTC+TGG | 0.487197 | 1_1:-49032391 | Msa0025670:CDS |
| GTATCAACTGAATTTCTTCA+GGG | 0.491308 | 1_1:-49032931 | Msa0025670:CDS |
| ATAGTAGTAGTGGTGTAAAT+GGG | 0.494585 | 1_1:-49034582 | Msa0025670:exon |
| GCTTTATCCTGGTGTATATG+AGG | 0.496818 | 1_1:-49026630 | Msa0025670:intron |
| TTATTCATGGAGGATGGCCT+AGG | 0.498324 | 1_1:-49032826 | Msa0025670:CDS |
| AAATGGGTACCTCCACTCTC+TGG | 0.501751 | 1_1:-49034566 | Msa0025670:CDS |
| TGGCTGGTAGCTTCAATGGC+TGG | 0.501850 | 1_1:-49027098 | Msa0025670:CDS |
| GAATGAGAAGGTTGACGGCT+CGG | 0.502596 | 1_1:-49032968 | Msa0025670:CDS |
| AATTTGTTGTTGATGGCGAC+TGG | 0.503081 | 1_1:-49026440 | Msa0025670:CDS |
| TTCAGCTGAGCTGAAAGTAA+AGG | 0.503279 | 1_1:-49034622 | Msa0025670:five_prime_UTR |
| TAGATGATGCATTCTGGTTG+AGG | 0.504133 | 1_1:-49026352 | Msa0025670:exon |
| AACTCAGAGCCAGAGGTTGT+GGG | 0.505238 | 1_1:+49032382 | None:intergenic |
| GGTGATGTTGTTGAGGTGGC+TGG | 0.506525 | 1_1:-49027114 | Msa0025670:CDS |
| TTCCGCCCCTGTAGAATCCT+CGG | 0.509559 | 1_1:-49032854 | Msa0025670:CDS |
| CAACTTGTCTATGGAGGAAA+GGG | 0.509652 | 1_1:-49032290 | Msa0025670:CDS |
| TCCACAGTGGTCACTTCAGT+TGG | 0.511638 | 1_1:+49032748 | None:intergenic |
| TAAGATGCAATGTAGTATGA+TGG | 0.511848 | 1_1:-49025444 | Msa0025670:three_prime_UTR |
| CATTGTTATCTTCAGGTGGA+TGG | 0.517779 | 1_1:+49030828 | None:intergenic |
| GATTCACCAGAAATTTCTGT+TGG | 0.518420 | 1_1:+49032664 | None:intergenic |
| AAGGTTGACGGCTCGGATGA+TGG | 0.519792 | 1_1:-49032961 | Msa0025670:CDS |
| CATTATACGAAGTGTTGGAA+TGG | 0.520758 | 1_1:+49032536 | None:intergenic |
| CTGGCATCACCCAATAAAGA+TGG | 0.522059 | 1_1:-49027079 | Msa0025670:CDS |
| TGGCCACATTCCCTCTACTA+AGG | 0.523289 | 1_1:-49034198 | Msa0025670:CDS |
| TCCATTGACAGTTCCTTCCA+CGG | 0.525012 | 1_1:-49032563 | Msa0025670:CDS |
| TCATTTGAGACAACACGGTA+TGG | 0.525060 | 1_1:-49032640 | Msa0025670:CDS |
| ACATCTTCCACGTATGTGAA+AGG | 0.533520 | 1_1:-49025704 | Msa0025670:three_prime_UTR |
| TGAACTGTTGTAGGGTACAT+AGG | 0.534895 | 1_1:-49025925 | Msa0025670:intron |
| AGGATCATTATACGAAGTGT+TGG | 0.535407 | 1_1:+49032531 | None:intergenic |
| AGAAGTCAACAACGTGGCAG+AGG | 0.537900 | 1_1:-49032782 | Msa0025670:CDS |
| GACAAGTTGAATGAAGTGTC+GGG | 0.539012 | 1_1:+49032304 | None:intergenic |
| TGACAGCAACATGGAAGAGA+GGG | 0.539210 | 1_1:-49025858 | Msa0025670:three_prime_UTR |
| GAAAGGTGGAAATGAGTGAG+AGG | 0.539660 | 1_1:+49034441 | None:intergenic |
| GACGAAGTTGGTCTTCCTCA+TGG | 0.541010 | 1_1:-49034218 | Msa0025670:CDS |
| AGAAAATAAACAATTAGGCG+TGG | 0.542565 | 1_1:-49025664 | Msa0025670:three_prime_UTR |
| AATAATTGAAAGACCTTCCG+TGG | 0.543122 | 1_1:+49034165 | None:intergenic |
| GGTCAGAATGAGAAGGTTGA+CGG | 0.549557 | 1_1:-49032973 | Msa0025670:CDS |
| CTTCTCACAAGTTCATTATG+TGG | 0.549567 | 1_1:-49033162 | Msa0025670:CDS |
| GGAGATCTAGATCCAGTTGA+AGG | 0.550006 | 1_1:-49032247 | Msa0025670:intron |
| GCAAAGTAGTATAGTAGTAG+TGG | 0.550251 | 1_1:-49034592 | Msa0025670:five_prime_UTR |
| CTTGTTGAATTCTGTGGCGA+CGG | 0.551688 | 1_1:-49027135 | Msa0025670:CDS |
| CAGTGGTCACTTCAGTTGGA+TGG | 0.552128 | 1_1:+49032752 | None:intergenic |
| GAAGTCAACAACGTGGCAGA+GGG | 0.553220 | 1_1:-49032781 | Msa0025670:CDS |
| CTGGAGAACAGATCCACAAA+GGG | 0.554459 | 1_1:-49026421 | Msa0025670:CDS |
| TCAACTTGTCTATGGAGGAA+AGG | 0.554637 | 1_1:-49032291 | Msa0025670:CDS |
| ATAGTGGATTGGTGTTGCGT+TGG | 0.555387 | 1_1:+49034471 | None:intergenic |
| ATAACACTAGTTAATGATTG+AGG | 0.555605 | 1_1:+49027054 | None:intergenic |
| TAGATACAGCGATGGTGGCG+TGG | 0.558021 | 1_1:+49025581 | None:intergenic |
| GAAAATAAACAATTAGGCGT+GGG | 0.559016 | 1_1:-49025663 | Msa0025670:three_prime_UTR |
| GAGGGAGAGAAATAGTGGAT+TGG | 0.560233 | 1_1:+49034460 | None:intergenic |
| AGACAAGTTGAATGAAGTGT+CGG | 0.561921 | 1_1:+49032303 | None:intergenic |
| AGAAAGTCTTTCAGGACTCA+AGG | 0.562500 | 1_1:-49027671 | Msa0025670:CDS |
| TGACAAGGATTTGGATGCTG+AGG | 0.564953 | 1_1:-49030584 | Msa0025670:intron |
| TTATAGACCATGATGGATCA+AGG | 0.567399 | 1_1:-49027035 | Msa0025670:intron |
| GGCTGGTCCAACTTTCCAGA+TGG | 0.570271 | 1_1:+49030761 | None:intergenic |
| CTGAAAAGGAACCCAGGACA+AGG | 0.571580 | 1_1:+49034640 | None:intergenic |
| CACGAAATGAATTTGTATCA+CGG | 0.573343 | 1_1:+49025473 | None:intergenic |
| AAAGGTGGAAATGAGTGAGA+GGG | 0.577677 | 1_1:+49034442 | None:intergenic |
| CCTAATAGATACAGCGATGG+TGG | 0.578730 | 1_1:+49025576 | None:intergenic |
| AGAAGGAGTTGGAACTGTCT+CGG | 0.579202 | 1_1:-49029103 | Msa0025670:CDS |
| GTGCTAGTACCAGAAGGAGT+TGG | 0.582635 | 1_1:-49029114 | Msa0025670:intron |
| TGAGTTCCCATTATGTGCCA+TGG | 0.584922 | 1_1:+49030805 | None:intergenic |
| CTTAAAAGCTCCTTAGTAGA+GGG | 0.586209 | 1_1:+49034188 | None:intergenic |
| AAGGTGTTACCGTGTGGTTG+TGG | 0.587121 | 1_1:+49034404 | None:intergenic |
| TGTCCATAGAGCAAAAGGAC+TGG | 0.587697 | 1_1:-49032456 | Msa0025670:CDS |
| GGATGCTGCAAATGATATTG+AGG | 0.590010 | 1_1:-49033094 | Msa0025670:CDS |
| ACTAGTGTTATAGACCATGA+TGG | 0.591582 | 1_1:-49027042 | Msa0025670:CDS |
| GTGTTACCGTGTGGTTGTGG+TGG | 0.592717 | 1_1:+49034407 | None:intergenic |
| TTCATTCAACTTGTCTATGG+AGG | 0.594794 | 1_1:-49032296 | Msa0025670:CDS |
| CAAACACTTACCAAAGAGGC+TGG | 0.595729 | 1_1:+49030744 | None:intergenic |
| TGTCTTGCAAACCAAGGCAG+AGG | 0.596959 | 1_1:-49027755 | Msa0025670:CDS |
| ATACCAAACACTTACCAAAG+AGG | 0.597173 | 1_1:+49030740 | None:intergenic |
| AACTAATCCTTTCACATACG+TGG | 0.597521 | 1_1:+49025697 | None:intergenic |
| AAATCATCTCAAGTTCATGC+TGG | 0.600300 | 1_1:-49030456 | Msa0025670:intron |
| ATGGCATTGTTATCTTCAGG+TGG | 0.604132 | 1_1:+49030824 | None:intergenic |
| GTCAGAGCGGATCTCATCAT+CGG | 0.605498 | 1_1:+49034256 | None:intergenic |
| ATTTAAAGGTCAGAATGAGA+AGG | 0.605549 | 1_1:-49032980 | Msa0025670:intron |
| GCTTAAAAGCTCCTTAGTAG+AGG | 0.607264 | 1_1:+49034187 | None:intergenic |
| TTGACAGCAACATGGAAGAG+AGG | 0.608330 | 1_1:-49025859 | Msa0025670:three_prime_UTR |
| GCTGAAAGAACAGATTGAGA+AGG | 0.608814 | 1_1:-49029081 | Msa0025670:CDS |
| GATTTAGGTAGTTCAAGCGA+AGG | 0.608993 | 1_1:-49032721 | Msa0025670:CDS |
| CCTAGTGGCATATCAACAGC+AGG | 0.611521 | 1_1:+49030854 | None:intergenic |
| CGACGGTGATGTTGTTGAGG+TGG | 0.612943 | 1_1:-49027118 | Msa0025670:CDS |
| ATCAACTGAATTTCTTCAGG+GGG | 0.613079 | 1_1:-49032929 | Msa0025670:CDS |
| CACATAATGAACTTGTGAGA+AGG | 0.616043 | 1_1:+49033163 | None:intergenic |
| CTCCATGAATAAAATATCCG+AGG | 0.617697 | 1_1:+49032837 | None:intergenic |
| TCTATGGACAAATCAACTGA+TGG | 0.619476 | 1_1:+49032469 | None:intergenic |
| GCTCCTTAGTAGAGGGAATG+TGG | 0.619864 | 1_1:+49034195 | None:intergenic |
| ACCTGGCAAACATTGTCAGA+CGG | 0.622952 | 1_1:-49033209 | Msa0025670:CDS |
| GGATGATCACATGCTACATG+AGG | 0.625741 | 1_1:-49030623 | Msa0025670:CDS |
| CTCAGAAAACTCAGAGCCAG+AGG | 0.625929 | 1_1:+49032375 | None:intergenic |
| CCTGCTGTTGATATGCCACT+AGG | 0.626325 | 1_1:-49030854 | Msa0025670:CDS |
| ATCCGAGGATTCTACAGGGG+CGG | 0.627206 | 1_1:+49032852 | None:intergenic |
| GAAATAACATAGCCAGAGAG+TGG | 0.629639 | 1_1:+49034554 | None:intergenic |
| TTAGGCGTGGGCTGATAGTG+AGG | 0.631300 | 1_1:-49025651 | Msa0025670:three_prime_UTR |
| TGGCGACGGTGATGTTGTTG+AGG | 0.633088 | 1_1:-49027121 | Msa0025670:CDS |
| CAAAGGGAGTCAGTAGCTAG+AGG | 0.634990 | 1_1:-49026405 | Msa0025670:CDS |
| GCAAACATTGTCAGACGGAG+AGG | 0.639169 | 1_1:-49033204 | Msa0025670:CDS |
| TCTCCTAATAGATACAGCGA+TGG | 0.640058 | 1_1:+49025573 | None:intergenic |
| CCAAAACCACCACAACCACA+CGG | 0.642179 | 1_1:-49034413 | Msa0025670:intron |
| AGTGATCTTTGAGTTCACCT+AGG | 0.642551 | 1_1:+49032809 | None:intergenic |
| AAATATCCGAGGATTCTACA+GGG | 0.643478 | 1_1:+49032848 | None:intergenic |
| TTTGTCTGTCTTGCAAACCA+AGG | 0.647837 | 1_1:-49027761 | Msa0025670:CDS |
| TTGTATTTATAGGAATGACC+TGG | 0.649997 | 1_1:-49033226 | Msa0025670:intron |
| AAAATGACTGAGAAGAGGAG+AGG | 0.651561 | 1_1:+49025528 | None:intergenic |
| ACCTGAAGATAACAATGCCA+TGG | 0.653047 | 1_1:-49030822 | Msa0025670:CDS |
| GCTCAGCTGAAAAGGAACCC+AGG | 0.653399 | 1_1:+49034634 | None:intergenic |
| ACGATAAAAGTTAAAACCTG+TGG | 0.655831 | 1_1:+49025604 | None:intergenic |
| TCAGGTGGATGGACACCTAG+TGG | 0.658156 | 1_1:+49030839 | None:intergenic |
| GCACGCACCTCATATACACC+AGG | 0.663325 | 1_1:+49026623 | None:intergenic |
| AAGAAATTCAGTTGATACCG+TGG | 0.664333 | 1_1:+49032936 | None:intergenic |
| GAAGTGCATTCATCTAAACT+CGG | 0.666994 | 1_1:+49032874 | None:intergenic |
| TATTGGGTGCTAGTACCAGA+AGG | 0.670191 | 1_1:-49029120 | Msa0025670:intron |
| ACTGGAGAACAGATCCACAA+AGG | 0.670248 | 1_1:-49026422 | Msa0025670:CDS |
| TCCATAGAGCAAAAGGACTG+GGG | 0.672682 | 1_1:-49032454 | Msa0025670:CDS |
| TATCAACTGAATTTCTTCAG+GGG | 0.673369 | 1_1:-49032930 | Msa0025670:CDS |
| GACAGCAACATGGAAGAGAG+GGG | 0.676424 | 1_1:-49025857 | Msa0025670:three_prime_UTR |
| GTAGAGGGAATGTGGCCATG+AGG | 0.677553 | 1_1:+49034203 | None:intergenic |
| AACTGCTTCACACATCTCTG+TGG | 0.692375 | 1_1:-49034528 | Msa0025670:CDS |
| ACTGCTAGATGTATATAACA+AGG | 0.701193 | 1_1:-49026324 | Msa0025670:intron |
| ATAACATAGCCAGAGAGTGG+AGG | 0.702622 | 1_1:+49034557 | None:intergenic |
| AAGTCTTTCAGGACTCAAGG+AGG | 0.706762 | 1_1:-49027668 | Msa0025670:intron |
| AATCATCATTTGAGACAACA+CGG | 0.711660 | 1_1:-49032645 | Msa0025670:CDS |
| AAGTCAACAACGTGGCAGAG+GGG | 0.721712 | 1_1:-49032780 | Msa0025670:CDS |
| AAAAGATGCAGAGTTGCATG+AGG | 0.730970 | 1_1:-49027698 | Msa0025670:CDS |
| CGGCTCGGATGATGGTACCA+CGG | 0.731376 | 1_1:-49032953 | Msa0025670:CDS |
| AATATCCGAGGATTCTACAG+GGG | 0.732323 | 1_1:+49032849 | None:intergenic |
| ACCTAAATCATTATCCACAG+TGG | 0.733210 | 1_1:+49032735 | None:intergenic |
| GAAATTGACGAATGTCAGAG+CGG | 0.742026 | 1_1:+49034243 | None:intergenic |
| CTCTAAAGAAGTCAACAACG+TGG | 0.748360 | 1_1:-49032788 | Msa0025670:CDS |
| TCCAACTGAAGTGACCACTG+TGG | 0.757560 | 1_1:-49032749 | Msa0025670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAATTAATTCCTAATT+TGG | - | chr1_1:49025709-49025728 | Msa0025670:three_prime_UTR | 10.0% |
| !! | CATATTAAGTAAAAAAAAAA+AGG | - | chr1_1:49027886-49027905 | Msa0025670:intron | 10.0% |
| !! | TTATAAAATTTACAGAAATT+CGG | + | chr1_1:49027991-49028010 | None:intergenic | 10.0% |
| !!! | ATTTTTTATACTCTTTTTTT+GGG | - | chr1_1:49028305-49028324 | Msa0025670:intron | 10.0% |
| !! | CTTTATATTAATTAATTCAT+AGG | + | chr1_1:49028423-49028442 | None:intergenic | 10.0% |
| !! | TCTATGAATTAATTAATATA+AGG | - | chr1_1:49028448-49028467 | Msa0025670:intron | 10.0% |
| !! | ATTAATTAATATAAGGAATT+AGG | - | chr1_1:49028455-49028474 | Msa0025670:intron | 10.0% |
| !!! | TTTAAAAAAAAAATCCATTT+TGG | + | chr1_1:49030044-49030063 | None:intergenic | 10.0% |
| !!! | AAAATGGATTTTTTTTTTAA+AGG | - | chr1_1:49030043-49030062 | Msa0025670:intron | 10.0% |
| !!! | GGTATTTTAATATTAAATAT+AGG | + | chr1_1:49030520-49030539 | None:intergenic | 10.0% |
| !! | CAAAAAATATACTAAAATAT+AGG | + | chr1_1:49030492-49030511 | None:intergenic | 10.0% |
| !!! | GGTATTTTAATATTAAATAT+AGG | - | chr1_1:49030520-49030539 | Msa0025670:intron | 10.0% |
| !!! | TTAAATTTTACTGTTTTTAA+TGG | - | chr1_1:49031056-49031075 | Msa0025670:intron | 10.0% |
| !!! | AAAGTGATTTTTTTTTTTTT+TGG | - | chr1_1:49033161-49033180 | Msa0025670:CDS | 10.0% |
| !!! | TTTTTTTTTTTTTTGGTTTA+TGG | - | chr1_1:49033168-49033187 | Msa0025670:CDS | 10.0% |
| !! | AAATGAAATTAATCCAAATT+AGG | + | chr1_1:49025725-49025744 | None:intergenic | 15.0% |
| !!! | CAATTTTAAAATTTAAACTC+AGG | + | chr1_1:49025975-49025994 | None:intergenic | 15.0% |
| !! | ATTCAGTTATATACAAATAA+TGG | + | chr1_1:49026037-49026056 | None:intergenic | 15.0% |
| !!! | TTATAAGTGTTAGAATATTT+TGG | - | chr1_1:49026077-49026096 | Msa0025670:intron | 15.0% |
| !!! | TTTCTTCTTTTAATAAAATC+TGG | - | chr1_1:49026291-49026310 | Msa0025670:intron | 15.0% |
| !! | GAACATATTTAACTAAAAAA+AGG | - | chr1_1:49026508-49026527 | Msa0025670:intron | 15.0% |
| !!! | TAAATTTCATTTTTCCTTTT+AGG | - | chr1_1:49026657-49026676 | Msa0025670:CDS | 15.0% |
| !!! | AAATTTCATTTTTCCTTTTA+GGG | - | chr1_1:49026658-49026677 | Msa0025670:CDS | 15.0% |
| !! | TATTTAACCATTGTATTTAT+AGG | - | chr1_1:49026789-49026808 | Msa0025670:intron | 15.0% |
| !! | AAAAAAAAAGGAAAAAAATG+AGG | - | chr1_1:49027898-49027917 | Msa0025670:intron | 15.0% |
| !!! | AATGATTCTTTTAAAATGTT+CGG | + | chr1_1:49028111-49028130 | None:intergenic | 15.0% |
| !!! | AAAAAAGAGTATAAAAAATG+AGG | + | chr1_1:49028304-49028323 | None:intergenic | 15.0% |
| !!! | CATTTTTTATACTCTTTTTT+TGG | - | chr1_1:49028304-49028323 | Msa0025670:intron | 15.0% |
| !!! | TTATTAATTAGTTTAGTGAA+TGG | + | chr1_1:49028574-49028593 | None:intergenic | 15.0% |
| !!! | ATTATAATACTTGTTGTTAT+AGG | - | chr1_1:49028609-49028628 | Msa0025670:intron | 15.0% |
| !! | ATAAGTATAATTAAGAATTG+AGG | - | chr1_1:49028787-49028806 | Msa0025670:intron | 15.0% |
| !! | TAAGTATAATTAAGAATTGA+GGG | - | chr1_1:49028788-49028807 | Msa0025670:intron | 15.0% |
| !! | TGAAATGAAAAAAAAGTTAA+GGG | + | chr1_1:49029696-49029715 | None:intergenic | 15.0% |
| !! | ATGAAATGAAAAAAAAGTTA+AGG | + | chr1_1:49029697-49029716 | None:intergenic | 15.0% |
| !!! | GTTTTTTATGTTTCATATTT+TGG | + | chr1_1:49029955-49029974 | None:intergenic | 15.0% |
| !! | TATGAAACATAAAAAACTTA+AGG | - | chr1_1:49029958-49029977 | Msa0025670:intron | 15.0% |
| !! | ATGAAACATAAAAAACTTAA+GGG | - | chr1_1:49029959-49029978 | Msa0025670:intron | 15.0% |
| !!! | AGTATATTTTTTGTATAGTA+TGG | - | chr1_1:49030499-49030518 | Msa0025670:intron | 15.0% |
| !! | TATAACTATTCTAAACAAAA+AGG | + | chr1_1:49030826-49030845 | None:intergenic | 15.0% |
| !!! | ATTTAGTATTGTTTTTGTTT+TGG | - | chr1_1:49031508-49031527 | Msa0025670:intron | 15.0% |
| !!! | TATTAAAATTTGAAATCAGA+TGG | - | chr1_1:49031751-49031770 | Msa0025670:intron | 15.0% |
| !!! | ATTAAAATTTGAAATCAGAT+GGG | - | chr1_1:49031752-49031771 | Msa0025670:intron | 15.0% |
| !!! | ATTTTTTTATCTTTTTGGAT+AGG | + | chr1_1:49032817-49032836 | None:intergenic | 15.0% |
| !!! | TCACTATTTTTTTATCTTTT+TGG | + | chr1_1:49032822-49032841 | None:intergenic | 15.0% |
| !! | TAAATTCAATTAAACATTAG+TGG | + | chr1_1:49033433-49033452 | None:intergenic | 15.0% |
| !! | ATGTTTAATTGAATTTACTT+CGG | - | chr1_1:49033436-49033455 | Msa0025670:intron | 15.0% |
| !! | CAAACATTAATTTAAATTGA+TGG | + | chr1_1:49033757-49033776 | None:intergenic | 15.0% |
| !! | CATCAATTTAAATTAATGTT+TGG | - | chr1_1:49033755-49033774 | Msa0025670:intron | 15.0% |
| !! | CTTCGTTTATAGTTAATTAT+TGG | + | chr1_1:49025681-49025700 | None:intergenic | 20.0% |
| !!! | TTTGGATTAATTTCATTTTC+AGG | - | chr1_1:49025727-49025746 | Msa0025670:three_prime_UTR | 20.0% |
| !!! | TAATTTTTGTACCTACTTTT+CGG | - | chr1_1:49026227-49026246 | Msa0025670:intron | 20.0% |
| !!! | AACTTTTCTTCAAGTAAAAA+CGG | + | chr1_1:49026388-49026407 | None:intergenic | 20.0% |
| !!! | TAATTTGTAGAGACTAAAAA+AGG | - | chr1_1:49026440-49026459 | Msa0025670:CDS | 20.0% |
| !! | AATTTGTAGAGACTAAAAAA+GGG | - | chr1_1:49026441-49026460 | Msa0025670:CDS | 20.0% |
| !!! | CAAAAAAATGTACATTTTGT+AGG | - | chr1_1:49026479-49026498 | Msa0025670:intron | 20.0% |
| !! | GATTAATGACAAACAATTAT+TGG | + | chr1_1:49026564-49026583 | None:intergenic | 20.0% |
| !! | TTAATATTGTGGAAATGAAA+AGG | + | chr1_1:49026624-49026643 | None:intergenic | 20.0% |
| !! | AAAAAGTTTAGATGAAAGAT+CGG | - | chr1_1:49026910-49026929 | Msa0025670:intron | 20.0% |
| !! | CCTTTAAATTGTATTAAAGT+TGG | + | chr1_1:49027034-49027053 | None:intergenic | 20.0% |
| !! | CCAACTTTAATACAATTTAA+AGG | - | chr1_1:49027031-49027050 | Msa0025670:intron | 20.0% |
| !! | TAATAAAGAAAAACAGAACA+CGG | + | chr1_1:49027933-49027952 | None:intergenic | 20.0% |
| !! | TCACAATATCAAACAAATAT+GGG | + | chr1_1:49027965-49027984 | None:intergenic | 20.0% |
| !! | ATCACAATATCAAACAAATA+TGG | + | chr1_1:49027966-49027985 | None:intergenic | 20.0% |
| !!! | GAACATTTTAAAAGAATCAT+TGG | - | chr1_1:49028110-49028129 | Msa0025670:intron | 20.0% |
| !! | GTATAAAAAATGAGGATAAA+CGG | + | chr1_1:49028296-49028315 | None:intergenic | 20.0% |
| !! | AGATAATAATATTACCATAC+TGG | - | chr1_1:49028548-49028567 | Msa0025670:intron | 20.0% |
| !! | AAGTATAATTAAGAATTGAG+GGG | - | chr1_1:49028789-49028808 | Msa0025670:intron | 20.0% |
| !!! | AGTTTTATTATGTTTGAATC+TGG | - | chr1_1:49029338-49029357 | Msa0025670:intron | 20.0% |
| !!! | CTGGATTTGAAATATATATA+GGG | - | chr1_1:49029381-49029400 | Msa0025670:intron | 20.0% |
| !! | ATTTAGATATTACGTATTGT+TGG | - | chr1_1:49029617-49029636 | Msa0025670:intron | 20.0% |
| !! | AAACCTAAAAATAACTTTAG+GGG | + | chr1_1:49029664-49029683 | None:intergenic | 20.0% |
| !! | GAAACCTAAAAATAACTTTA+GGG | + | chr1_1:49029665-49029684 | None:intergenic | 20.0% |
| !! | TGAAACCTAAAAATAACTTT+AGG | + | chr1_1:49029666-49029685 | None:intergenic | 20.0% |
| !!! | ATGTGTTTAATGTTACTTAA+GGG | + | chr1_1:49029726-49029745 | None:intergenic | 20.0% |
| !!! | AATGTGTTTAATGTTACTTA+AGG | + | chr1_1:49029727-49029746 | None:intergenic | 20.0% |
| !! | TTAAGTAACATTAAACACAT+TGG | - | chr1_1:49029726-49029745 | Msa0025670:intron | 20.0% |
| !! | GTCTATAATTAGCAATTTAA+TGG | + | chr1_1:49029817-49029836 | None:intergenic | 20.0% |
| !! | AAATGGAACGTAAAAATTTA+AGG | - | chr1_1:49029986-49030005 | Msa0025670:intron | 20.0% |
| !! | AATGGAACGTAAAAATTTAA+GGG | - | chr1_1:49029987-49030006 | Msa0025670:intron | 20.0% |
| !!! | AATTTTACTGTTTTTAATGG+AGG | - | chr1_1:49031059-49031078 | Msa0025670:intron | 20.0% |
| !!! | ATTTTACTGTTTTTAATGGA+GGG | - | chr1_1:49031060-49031079 | Msa0025670:intron | 20.0% |
| !!! | CCATATCATAAAATATGTTT+TGG | + | chr1_1:49031096-49031115 | None:intergenic | 20.0% |
| !!! | CCAAAACATATTTTATGATA+TGG | - | chr1_1:49031093-49031112 | Msa0025670:intron | 20.0% |
| !! | TATATATACATCAAGCAAAT+GGG | + | chr1_1:49031122-49031141 | None:intergenic | 20.0% |
| !! | ATATATATACATCAAGCAAA+TGG | + | chr1_1:49031123-49031142 | None:intergenic | 20.0% |
| !! | AAACTGTAGAAAAACAAAAA+AGG | + | chr1_1:49031907-49031926 | None:intergenic | 20.0% |
| !!! | TTTTTCAGATATTAGTTTTC+TGG | + | chr1_1:49032311-49032330 | None:intergenic | 20.0% |
| !!! | AGTATGCATTTTCATATTAA+TGG | - | chr1_1:49032728-49032747 | Msa0025670:CDS | 20.0% |
| !!! | GTATGCATTTTCATATTAAT+GGG | - | chr1_1:49032729-49032748 | Msa0025670:CDS | 20.0% |
| !!! | TTTTCATATTAATGGGTTAT+TGG | - | chr1_1:49032736-49032755 | Msa0025670:CDS | 20.0% |
| !! | AATCAAATTGAAATTTCAGT+TGG | - | chr1_1:49033063-49033082 | Msa0025670:intron | 20.0% |
| !!! | TTTTTTTTGGTTTATGGTAA+AGG | - | chr1_1:49033174-49033193 | Msa0025670:CDS | 20.0% |
| !!! | TCATTTCAATGATTTGTTAT+CGG | - | chr1_1:49033206-49033225 | Msa0025670:CDS | 20.0% |
| !!! | TATATGTTGTTCTTTTAAGA+AGG | + | chr1_1:49033277-49033296 | None:intergenic | 20.0% |
| !! | TGTTTAATTGAATTTACTTC+GGG | - | chr1_1:49033437-49033456 | Msa0025670:intron | 20.0% |
| !! | AAAGATTTAATAACAACTTG+TGG | - | chr1_1:49033548-49033567 | Msa0025670:intron | 20.0% |
| !!! | TAGATAAAATTTGTTGTTGA+TGG | - | chr1_1:49033578-49033597 | Msa0025670:intron | 20.0% |
| !! | TTAGGAGAAAATAAACAATT+AGG | - | chr1_1:49034356-49034375 | Msa0025670:intron | 20.0% |
| !! | TGCTTCTAAGAACAATTAAA+CGG | + | chr1_1:49026589-49026608 | None:intergenic | 25.0% |
| ! | ATCATACTTGCTTAATATTG+TGG | + | chr1_1:49026635-49026654 | None:intergenic | 25.0% |
| ! | TTCAGTTCAAAATTTAGCAA+GGG | + | chr1_1:49026688-49026707 | None:intergenic | 25.0% |
| !!! | CAACATTGATTCTTTAGAAA+CGG | - | chr1_1:49026886-49026905 | Msa0025670:intron | 25.0% |
| !!! | AACATTGATTCTTTAGAAAC+GGG | - | chr1_1:49026887-49026906 | Msa0025670:intron | 25.0% |
| !! | CAAATTTTCACTTTAATACC+TGG | - | chr1_1:49028069-49028088 | Msa0025670:intron | 25.0% |
| ! | CTAGTATTATATATCACTAG+CGG | - | chr1_1:49028252-49028271 | Msa0025670:intron | 25.0% |
| ! | AGTATAATTAAGAATTGAGG+GGG | - | chr1_1:49028790-49028809 | Msa0025670:intron | 25.0% |
| !!! | TAAGCAACTTTTCACTTTTT+AGG | - | chr1_1:49028906-49028925 | Msa0025670:intron | 25.0% |
| ! | CATTGAATAAATGATGTATG+TGG | + | chr1_1:49028931-49028950 | None:intergenic | 25.0% |
| ! | GTAAGTGTTTGGTATTATAT+TGG | - | chr1_1:49029293-49029312 | Msa0025670:intron | 25.0% |
| ! | TTTCAAATCCAGGTAAAAAA+GGG | + | chr1_1:49029373-49029392 | None:intergenic | 25.0% |
| ! | ATTTCAAATCCAGGTAAAAA+AGG | + | chr1_1:49029374-49029393 | None:intergenic | 25.0% |
| ! | CCTATATATATTTCAAATCC+AGG | + | chr1_1:49029383-49029402 | None:intergenic | 25.0% |
| !! | CCTGGATTTGAAATATATAT+AGG | - | chr1_1:49029380-49029399 | Msa0025670:intron | 25.0% |
| !! | TTTTACTTATCTCATTATGC+AGG | - | chr1_1:49029518-49029537 | Msa0025670:intron | 25.0% |
| ! | TTTACTTATCTCATTATGCA+GGG | - | chr1_1:49029519-49029538 | Msa0025670:intron | 25.0% |
| !! | TGTGTTTAATGTTACTTAAG+GGG | + | chr1_1:49029725-49029744 | None:intergenic | 25.0% |
| ! | TCTTAACCTTTGTAATGTAA+GGG | + | chr1_1:49029785-49029804 | None:intergenic | 25.0% |
| !! | GTCTCATTTTGTTAACTTAA+GGG | + | chr1_1:49029848-49029867 | None:intergenic | 25.0% |
| !! | TGTCTCATTTTGTTAACTTA+AGG | + | chr1_1:49029849-49029868 | None:intergenic | 25.0% |
| ! | ATTTGTAACTTAAGCCTTAA+GGG | - | chr1_1:49029896-49029915 | Msa0025670:intron | 25.0% |
| ! | AAAAACTTAAGGGATCAAAA+TGG | - | chr1_1:49029969-49029988 | Msa0025670:intron | 25.0% |
| !! | ATTTACAAACGTTGACATTT+TGG | + | chr1_1:49030014-49030033 | None:intergenic | 25.0% |
| ! | ATGTCAACGTTTGTAAATTA+AGG | - | chr1_1:49030016-49030035 | Msa0025670:intron | 25.0% |
| ! | TGTCAACGTTTGTAAATTAA+GGG | - | chr1_1:49030017-49030036 | Msa0025670:intron | 25.0% |
| ! | ACTGGGAAATGTTAAAATAT+AGG | - | chr1_1:49030381-49030400 | Msa0025670:intron | 25.0% |
| ! | CTGGGAAATGTTAAAATATA+GGG | - | chr1_1:49030382-49030401 | Msa0025670:intron | 25.0% |
| ! | CTAAAATATAGGGTATAGTA+TGG | + | chr1_1:49030481-49030500 | None:intergenic | 25.0% |
| ! | ACAAGTTAAGAAGCTAAAAA+AGG | + | chr1_1:49030660-49030679 | None:intergenic | 25.0% |
| ! | AAACAGTAAAATTTAACAGC+AGG | + | chr1_1:49031052-49031071 | None:intergenic | 25.0% |
| !!! | TTTTACTGTTTTTAATGGAG+GGG | - | chr1_1:49031061-49031080 | Msa0025670:intron | 25.0% |
| !! | ACTTTGAGTCTTTTATGTTT+AGG | - | chr1_1:49031429-49031448 | Msa0025670:intron | 25.0% |
| !! | TATGTTTAGGATTTGAGAAT+TGG | - | chr1_1:49031442-49031461 | Msa0025670:intron | 25.0% |
| !!! | AGTATTGTTTTTGTTTTGGT+AGG | - | chr1_1:49031512-49031531 | Msa0025670:intron | 25.0% |
| ! | TAATTCTGTAGGATTGAAAT+GGG | + | chr1_1:49031583-49031602 | None:intergenic | 25.0% |
| ! | TTAATTCTGTAGGATTGAAA+TGG | + | chr1_1:49031584-49031603 | None:intergenic | 25.0% |
| ! | TTCTACTCAATTAATTCTGT+AGG | + | chr1_1:49031594-49031613 | None:intergenic | 25.0% |
| !!! | GTCAATTTTTTAAGCAGTTT+TGG | - | chr1_1:49032430-49032449 | Msa0025670:CDS | 25.0% |
| !!! | TTTTTTAAGCAGTTTTGGAT+AGG | - | chr1_1:49032435-49032454 | Msa0025670:CDS | 25.0% |
| !! | GTTTTACAATCATGAGTTTA+GGG | + | chr1_1:49032512-49032531 | None:intergenic | 25.0% |
| !! | TGTTTTACAATCATGAGTTT+AGG | + | chr1_1:49032513-49032532 | None:intergenic | 25.0% |
| !! | TTTTATCTTTTTGGATAGGA+AGG | + | chr1_1:49032813-49032832 | None:intergenic | 25.0% |
| ! | ATAACACTAGTTAATGATTG+AGG | + | chr1_1:49032974-49032993 | None:intergenic | 25.0% |
| !!! | AGACACTTGTCTTTATTTTA+AGG | - | chr1_1:49033035-49033054 | Msa0025670:intron | 25.0% |
| !!! | AAATTTCAGTTGGTAACTAT+TGG | - | chr1_1:49033073-49033092 | Msa0025670:intron | 25.0% |
| ! | ATTAACAAGAACAGAATGAT+GGG | + | chr1_1:49033113-49033132 | None:intergenic | 25.0% |
| ! | AATTAACAAGAACAGAATGA+TGG | + | chr1_1:49033114-49033133 | None:intergenic | 25.0% |
| ! | TTATGTTATGCTCGTTTAAA+AGG | - | chr1_1:49033132-49033151 | Msa0025670:CDS | 25.0% |
| ! | TGTTCATTATTATAATACCC+AGG | - | chr1_1:49033343-49033362 | Msa0025670:intron | 25.0% |
| ! | TATATAACAAGGTATGATGA+TGG | - | chr1_1:49033712-49033731 | Msa0025670:intron | 25.0% |
| ! | GAATCATACTAATGATCTTA+AGG | - | chr1_1:49033938-49033957 | Msa0025670:intron | 25.0% |
| ! | ACATGCATTTAAATCAGTTA+GGG | - | chr1_1:49033974-49033993 | Msa0025670:intron | 25.0% |
| !!! | TTGAATTTGTTTCTGAAGTT+TGG | - | chr1_1:49034057-49034076 | Msa0025670:intron | 25.0% |
| !!! | TGAATTTGTTTCTGAAGTTT+GGG | - | chr1_1:49034058-49034077 | Msa0025670:intron | 25.0% |
| ! | CAACAGTTCACAATAATATT+AGG | + | chr1_1:49034090-49034109 | None:intergenic | 25.0% |
| ! | ATATTATTGTGAACTGTTGT+AGG | - | chr1_1:49034091-49034110 | Msa0025670:intron | 25.0% |
| ! | TATTATTGTGAACTGTTGTA+GGG | - | chr1_1:49034092-49034111 | Msa0025670:intron | 25.0% |
| ! | TACATAGGAATTGAAGATAA+TGG | - | chr1_1:49034115-49034134 | Msa0025670:intron | 25.0% |
| ! | ATTTAAATGTGCATACTAGA+TGG | + | chr1_1:49034243-49034262 | None:intergenic | 25.0% |
| !!! | GAAAGGATTAGTTTATGATT+AGG | - | chr1_1:49034338-49034357 | Msa0025670:intron | 25.0% |
| !!! | GTTTAGATAGTTTTAGTAAG+AGG | - | chr1_1:49034398-49034417 | Msa0025670:intron | 25.0% |
| TATAGTAGTAGTGGTGTAAA+TGG | - | chr1_1:49025442-49025461 | Msa0025670:three_prime_UTR | 30.0% | |
| ATAGTAGTAGTGGTGTAAAT+GGG | - | chr1_1:49025443-49025462 | Msa0025670:three_prime_UTR | 30.0% | |
| !!! | AATTTTAAAATTGCGTCTCG+CGG | - | chr1_1:49025982-49026001 | Msa0025670:intron | 30.0% |
| TGAAGAAAAGTTCACTCATT+AGG | - | chr1_1:49026396-49026415 | Msa0025670:CDS | 30.0% | |
| GAAGAAAAGTTCACTCATTA+GGG | - | chr1_1:49026397-49026416 | Msa0025670:CDS | 30.0% | |
| ATTAGGGAATAATAGCATGT+AGG | - | chr1_1:49026413-49026432 | Msa0025670:CDS | 30.0% | |
| AGAGATGCTTAACTAACTAA+TGG | + | chr1_1:49026536-49026555 | None:intergenic | 30.0% | |
| TCAGTTCAAAATTTAGCAAG+GGG | + | chr1_1:49026687-49026706 | None:intergenic | 30.0% | |
| GTTCAGTTCAAAATTTAGCA+AGG | + | chr1_1:49026689-49026708 | None:intergenic | 30.0% | |
| ! | TTTTACAAATGACCTCTAGT+AGG | - | chr1_1:49026725-49026744 | Msa0025670:intron | 30.0% |
| TTTACAAATGACCTCTAGTA+GGG | - | chr1_1:49026726-49026745 | Msa0025670:intron | 30.0% | |
| GGTCATTCCTATAAATACAA+TGG | + | chr1_1:49026799-49026818 | None:intergenic | 30.0% | |
| TTGTATTTATAGGAATGACC+TGG | - | chr1_1:49026799-49026818 | Msa0025670:intron | 30.0% | |
| GAGAGGTCATAAAAAGATTA+AGG | - | chr1_1:49026838-49026857 | Msa0025670:intron | 30.0% | |
| !! | TTCTTAACGCACTATTTTTC+TGG | - | chr1_1:49026984-49027003 | Msa0025670:intron | 30.0% |
| ATTTAAAGGTCAGAATGAGA+AGG | - | chr1_1:49027045-49027064 | Msa0025670:CDS | 30.0% | |
| GTATCAACTGAATTTCTTCA+GGG | - | chr1_1:49027094-49027113 | Msa0025670:CDS | 30.0% | |
| TATCAACTGAATTTCTTCAG+GGG | - | chr1_1:49027095-49027114 | Msa0025670:CDS | 30.0% | |
| ! | ATCCTCGGATATTTTATTCA+TGG | - | chr1_1:49027186-49027205 | Msa0025670:intron | 30.0% |
| ! | GATATTTTATTCATGGAGGA+TGG | - | chr1_1:49027193-49027212 | Msa0025670:intron | 30.0% |
| ! | AATCATCATTTGAGACAACA+CGG | - | chr1_1:49027380-49027399 | Msa0025670:intron | 30.0% |
| ! | GTCGCAAATTTTATTCAGAA+TGG | - | chr1_1:49027757-49027776 | Msa0025670:CDS | 30.0% |
| ATATTAGACTTACCTTCAAC+TGG | + | chr1_1:49027793-49027812 | None:intergenic | 30.0% | |
| !! | TGAAAATTTGAGTTGAAGCA+AGG | + | chr1_1:49028059-49028078 | None:intergenic | 30.0% |
| AATCATTGGCAACAAATTCT+TGG | - | chr1_1:49028124-49028143 | Msa0025670:intron | 30.0% | |
| ATCATTGGCAACAAATTCTT+GGG | - | chr1_1:49028125-49028144 | Msa0025670:intron | 30.0% | |
| TATATATCACTAGCGGAAAT+CGG | - | chr1_1:49028259-49028278 | Msa0025670:intron | 30.0% | |
| !! | GTTTGCTTTAATTTGGTGAA+TGG | + | chr1_1:49028519-49028538 | None:intergenic | 30.0% |
| ACAGCATGTTTGCTTTAATT+TGG | + | chr1_1:49028526-49028545 | None:intergenic | 30.0% | |
| TGGTGCAATGTTTAAATTTG+AGG | - | chr1_1:49028728-49028747 | Msa0025670:intron | 30.0% | |
| GGTGCAATGTTTAAATTTGA+GGG | - | chr1_1:49028729-49028748 | Msa0025670:intron | 30.0% | |
| GTGCAATGTTTAAATTTGAG+GGG | - | chr1_1:49028730-49028749 | Msa0025670:intron | 30.0% | |
| TCGATTTAGTATACTTTCTC+CGG | - | chr1_1:49028874-49028893 | Msa0025670:intron | 30.0% | |
| AAGTTGCTTATAATTGAGAC+CGG | + | chr1_1:49028896-49028915 | None:intergenic | 30.0% | |
| TGAACCTAAAAAGTGAAAAG+TGG | - | chr1_1:49028988-49029007 | Msa0025670:intron | 30.0% | |
| !!! | TAAGCCACTTTTCACTTTTT+AGG | + | chr1_1:49028995-49029014 | None:intergenic | 30.0% |
| TTCAAATCCAGGTAAAAAAG+GGG | + | chr1_1:49029372-49029391 | None:intergenic | 30.0% | |
| !! | TCCAATTACTCATTTTGACA+AGG | - | chr1_1:49029426-49029445 | Msa0025670:intron | 30.0% |
| TCCTTGTCAAAATGAGTAAT+TGG | + | chr1_1:49029430-49029449 | None:intergenic | 30.0% | |
| !! | TACTCATTTTGACAAGGATT+TGG | - | chr1_1:49029432-49029451 | Msa0025670:intron | 30.0% |
| ! | GTGTTTAATGTTACTTAAGG+GGG | + | chr1_1:49029724-49029743 | None:intergenic | 30.0% |
| GTCTTAACCTTTGTAATGTA+AGG | + | chr1_1:49029786-49029805 | None:intergenic | 30.0% | |
| TTACAAAGGTTAAGACACTT+TGG | - | chr1_1:49029790-49029809 | Msa0025670:intron | 30.0% | |
| ATTGCTAATTATAGACACGT+TGG | - | chr1_1:49029821-49029840 | Msa0025670:intron | 30.0% | |
| CATTTGTAACTTAAGCCTTA+AGG | - | chr1_1:49029895-49029914 | Msa0025670:intron | 30.0% | |
| TGTAAATTAAGGGACCAAAA+TGG | - | chr1_1:49030027-49030046 | Msa0025670:intron | 30.0% | |
| TTAACATTTCCCAGTATGAA+AGG | + | chr1_1:49030376-49030395 | None:intergenic | 30.0% | |
| GCGGACACTAATATATTTAA+GGG | + | chr1_1:49030708-49030727 | None:intergenic | 30.0% | |
| ! | TTCCTTTTGCAAATGCTATT+GGG | - | chr1_1:49030889-49030908 | Msa0025670:intron | 30.0% |
| TTTACAAAGTTCTCTTGTGA+AGG | + | chr1_1:49031157-49031176 | None:intergenic | 30.0% | |
| TCACAAGAGAACTTTGTAAA+TGG | - | chr1_1:49031157-49031176 | Msa0025670:intron | 30.0% | |
| CTGTCATTAGTCATAATTGA+AGG | + | chr1_1:49031189-49031208 | None:intergenic | 30.0% | |
| ! | TCATCTTTTGTGATTTTGCA+GGG | + | chr1_1:49031275-49031294 | None:intergenic | 30.0% |
| ! | TTCATCTTTTGTGATTTTGC+AGG | + | chr1_1:49031276-49031295 | None:intergenic | 30.0% |
| TTAAAAATGAATTGCAGGCA+AGG | + | chr1_1:49031697-49031716 | None:intergenic | 30.0% | |
| !! | TTGCCTGCAATTCATTTTTA+AGG | - | chr1_1:49031696-49031715 | Msa0025670:intron | 30.0% |
| GATTGCTTAAAGTTTGTATG+AGG | - | chr1_1:49031843-49031862 | Msa0025670:intron | 30.0% | |
| ! | TTTGTATGAGGTTTGATTTC+TGG | - | chr1_1:49031855-49031874 | Msa0025670:intron | 30.0% |
| ! | TTGATTTCTGGACTTAATGT+TGG | - | chr1_1:49031867-49031886 | Msa0025670:intron | 30.0% |
| ! | TGATTTCTGGACTTAATGTT+GGG | - | chr1_1:49031868-49031887 | Msa0025670:intron | 30.0% |
| CTGTAGAAAAACAAAAAAGG+TGG | + | chr1_1:49031904-49031923 | None:intergenic | 30.0% | |
| ! | TCAGATTTTGGACACATATT+TGG | + | chr1_1:49031954-49031973 | None:intergenic | 30.0% |
| TTTGAGCAATAGATTTGATC+GGG | + | chr1_1:49032123-49032142 | None:intergenic | 30.0% | |
| CTTTGAGCAATAGATTTGAT+CGG | + | chr1_1:49032124-49032143 | None:intergenic | 30.0% | |
| ATGCTGAAAACAAAAACATG+TGG | + | chr1_1:49032242-49032261 | None:intergenic | 30.0% | |
| ATTGACAAATGCTAACCATT+AGG | + | chr1_1:49032416-49032435 | None:intergenic | 30.0% | |
| ! | GAATGTTGGTTATGAAATTG+AGG | - | chr1_1:49032457-49032476 | Msa0025670:CDS | 30.0% |
| AATTCTTTCTCTGACAAAAC+TGG | + | chr1_1:49032615-49032634 | None:intergenic | 30.0% | |
| GATCATACATATGCTGTATT+TGG | - | chr1_1:49032766-49032785 | Msa0025670:CDS | 30.0% | |
| ATTGAGGATCCATCTTTATT+GGG | + | chr1_1:49032958-49032977 | None:intergenic | 30.0% | |
| ATCAGTATTATTACTAAGCC+AGG | + | chr1_1:49033317-49033336 | None:intergenic | 30.0% | |
| ACTGCTAGATGTATATAACA+AGG | - | chr1_1:49033701-49033720 | Msa0025670:intron | 30.0% | |
| ! | TTTTGCTAAAAGCTACACTT+TGG | + | chr1_1:49033833-49033852 | None:intergenic | 30.0% |
| GACATGCATTTAAATCAGTT+AGG | - | chr1_1:49033973-49033992 | Msa0025670:intron | 30.0% | |
| ! | CTGACATTAACTAAAAGTGT+CGG | + | chr1_1:49034004-49034023 | None:intergenic | 30.0% |
| !! | GAATTTGTTTCTGAAGTTTG+GGG | - | chr1_1:49034059-49034078 | Msa0025670:intron | 30.0% |
| ATGAAAGAACGACATTTAGA+TGG | - | chr1_1:49034203-49034222 | Msa0025670:CDS | 30.0% | |
| AGAAAATAAACAATTAGGCG+TGG | - | chr1_1:49034361-49034380 | Msa0025670:intron | 30.0% | |
| GAAAATAAACAATTAGGCGT+GGG | - | chr1_1:49034362-49034381 | Msa0025670:intron | 30.0% | |
| ACGATAAAAGTTAAAACCTG+TGG | + | chr1_1:49034424-49034443 | None:intergenic | 30.0% | |
| ! | TTTGTGGTTCATTTTCAAAG+TGG | - | chr1_1:49034519-49034538 | Msa0025670:CDS | 30.0% |
| CACGAAATGAATTTGTATCA+CGG | + | chr1_1:49034555-49034574 | None:intergenic | 30.0% | |
| TAAGATGCAATGTAGTATGA+TGG | - | chr1_1:49034581-49034600 | Msa0025670:exon | 30.0% | |
| GCAAAGTAGTATAGTAGTAG+TGG | - | chr1_1:49025433-49025452 | Msa0025670:three_prime_UTR | 35.0% | |
| !! | AGAGAATATGCACTTGTTGT+TGG | + | chr1_1:49025534-49025553 | None:intergenic | 35.0% |
| GAAGAAGAAGAAGAAGAAGA+AGG | + | chr1_1:49025643-49025662 | None:intergenic | 35.0% | |
| CTTAAAAGCTCCTTAGTAGA+GGG | + | chr1_1:49025840-49025859 | None:intergenic | 35.0% | |
| AATAATTGAAAGACCTTCCG+TGG | + | chr1_1:49025863-49025882 | None:intergenic | 35.0% | |
| TCTGGTATGTTGCAAATGAT+TGG | - | chr1_1:49026309-49026328 | Msa0025670:intron | 35.0% | |
| CAAATGATTGGTAGAGTTTG+AGG | - | chr1_1:49026321-49026340 | Msa0025670:intron | 35.0% | |
| AATGACTTTCTCTATAGCGA+TGG | - | chr1_1:49026359-49026378 | Msa0025670:exon | 35.0% | |
| TTACAAATGACCTCTAGTAG+GGG | - | chr1_1:49026727-49026746 | Msa0025670:intron | 35.0% | |
| CACATAATGAACTTGTGAGA+AGG | + | chr1_1:49026865-49026884 | None:intergenic | 35.0% | |
| CTTCTCACAAGTTCATTATG+TGG | - | chr1_1:49026863-49026882 | Msa0025670:intron | 35.0% | |
| GATATTGAGGTTCTATCAAC+AGG | - | chr1_1:49026944-49026963 | Msa0025670:intron | 35.0% | |
| ! | AAGAAATTCAGTTGATACCG+TGG | + | chr1_1:49027092-49027111 | None:intergenic | 35.0% |
| GGTATCAACTGAATTTCTTC+AGG | - | chr1_1:49027093-49027112 | Msa0025670:CDS | 35.0% | |
| ATCAACTGAATTTCTTCAGG+GGG | - | chr1_1:49027096-49027115 | Msa0025670:CDS | 35.0% | |
| GAAGTGCATTCATCTAAACT+CGG | + | chr1_1:49027154-49027173 | None:intergenic | 35.0% | |
| AAATATCCGAGGATTCTACA+GGG | + | chr1_1:49027180-49027199 | None:intergenic | 35.0% | |
| AAAATATCCGAGGATTCTAC+AGG | + | chr1_1:49027181-49027200 | None:intergenic | 35.0% | |
| CTCCATGAATAAAATATCCG+AGG | + | chr1_1:49027191-49027210 | None:intergenic | 35.0% | |
| ! | CTCGGATATTTTATTCATGG+AGG | - | chr1_1:49027189-49027208 | Msa0025670:intron | 35.0% |
| ACCACTGTGGATAATGATTT+AGG | - | chr1_1:49027289-49027308 | Msa0025670:intron | 35.0% | |
| ACCTAAATCATTATCCACAG+TGG | + | chr1_1:49027293-49027312 | None:intergenic | 35.0% | |
| GAACTTTGGCTATCAAAGTT+CGG | + | chr1_1:49027337-49027356 | None:intergenic | 35.0% | |
| GATTCACCAGAAATTTCTGT+TGG | + | chr1_1:49027364-49027383 | None:intergenic | 35.0% | |
| TGACGCTTTAATGGGAAAAA+TGG | - | chr1_1:49027423-49027442 | Msa0025670:intron | 35.0% | |
| GCTTTAATGGGAAAAATGGT+TGG | - | chr1_1:49027427-49027446 | Msa0025670:intron | 35.0% | |
| !! | CATTATACGAAGTGTTGGAA+TGG | + | chr1_1:49027492-49027511 | None:intergenic | 35.0% |
| AGGATCATTATACGAAGTGT+TGG | + | chr1_1:49027497-49027516 | None:intergenic | 35.0% | |
| TTCTCTCTATTGTCAACATC+AGG | + | chr1_1:49027517-49027536 | None:intergenic | 35.0% | |
| TCTATGGACAAATCAACTGA+TGG | + | chr1_1:49027559-49027578 | None:intergenic | 35.0% | |
| ! | TGATTTGTCCATAGAGCAAA+AGG | - | chr1_1:49027564-49027583 | Msa0025670:intron | 35.0% |
| ! | AGACAAGTTGAATGAAGTGT+CGG | + | chr1_1:49027725-49027744 | None:intergenic | 35.0% |
| CACTTCATTCAACTTGTCTA+TGG | - | chr1_1:49027726-49027745 | Msa0025670:CDS | 35.0% | |
| TTCATTCAACTTGTCTATGG+AGG | - | chr1_1:49027729-49027748 | Msa0025670:CDS | 35.0% | |
| ATATATCACTAGCGGAAATC+GGG | - | chr1_1:49028260-49028279 | Msa0025670:intron | 35.0% | |
| TCAGCATAAGTTTACTTGTG+TGG | + | chr1_1:49028382-49028401 | None:intergenic | 35.0% | |
| TCACATGCTATTGCAATTGT+CGG | - | chr1_1:49028632-49028651 | Msa0025670:intron | 35.0% | |
| TTACAATGACTTTGACTCAC+TGG | + | chr1_1:49028850-49028869 | None:intergenic | 35.0% | |
| GTGAGTCAAAGTCATTGTAA+TGG | - | chr1_1:49028850-49028869 | Msa0025670:intron | 35.0% | |
| AAGTGGCTTATAATTGAGAC+CGG | - | chr1_1:49029005-49029024 | Msa0025670:intron | 35.0% | |
| !!! | CATTTTCCATCTGTCACTTT+AGG | - | chr1_1:49029047-49029066 | Msa0025670:intron | 35.0% |
| CATTATCCTAAAGTGACAGA+TGG | + | chr1_1:49029056-49029075 | None:intergenic | 35.0% | |
| TGCAAAAGGAGATGATTCTT+AGG | - | chr1_1:49029122-49029141 | Msa0025670:intron | 35.0% | |
| ATACCAAACACTTACCAAAG+AGG | + | chr1_1:49029288-49029307 | None:intergenic | 35.0% | |
| AAATCATCTCAAGTTCATGC+TGG | - | chr1_1:49029569-49029588 | Msa0025670:intron | 35.0% | |
| !!! | TGGCCCCTAAAGTTATTTTT+AGG | - | chr1_1:49029658-49029677 | Msa0025670:intron | 35.0% |
| TTTGGTCCCTTACATTACAA+AGG | - | chr1_1:49029776-49029795 | Msa0025670:intron | 35.0% | |
| ! | GACACTTTAGTCTTCTCTTT+CGG | + | chr1_1:49029872-49029891 | None:intergenic | 35.0% |
| CGCGGACACTAATATATTTA+AGG | + | chr1_1:49030709-49030728 | None:intergenic | 35.0% | |
| TTGAATCTCTGTTGTCAAAG+CGG | + | chr1_1:49030803-49030822 | None:intergenic | 35.0% | |
| TAGCATTTGCAAAAGGAAGA+GGG | + | chr1_1:49030887-49030906 | None:intergenic | 35.0% | |
| ATAGCATTTGCAAAAGGAAG+AGG | + | chr1_1:49030888-49030907 | None:intergenic | 35.0% | |
| ! | CTTCCTTTTGCAAATGCTAT+TGG | - | chr1_1:49030888-49030907 | Msa0025670:intron | 35.0% |
| AGAACAGATTGAGAAGGAAA+AGG | - | chr1_1:49030950-49030969 | Msa0025670:intron | 35.0% | |
| ! | GTTTTTAATGGAGGGGAAAA+TGG | - | chr1_1:49031068-49031087 | Msa0025670:intron | 35.0% |
| GGTATGACATAAATTTGAGG+AGG | + | chr1_1:49031220-49031239 | None:intergenic | 35.0% | |
| GCAGGTATGACATAAATTTG+AGG | + | chr1_1:49031223-49031242 | None:intergenic | 35.0% | |
| !! | CGATATGATTTTAACGATCC+TGG | - | chr1_1:49031318-49031337 | Msa0025670:intron | 35.0% |
| ! | TTGGTAGGATCTTTTGATCT+TGG | - | chr1_1:49031527-49031546 | Msa0025670:intron | 35.0% |
| TAAGATCGCAATCAAGATCA+AGG | + | chr1_1:49031618-49031637 | None:intergenic | 35.0% | |
| ATCTAGCATCAGATCAAAAG+GGG | + | chr1_1:49031660-49031679 | None:intergenic | 35.0% | |
| GATCTAGCATCAGATCAAAA+GGG | + | chr1_1:49031661-49031680 | None:intergenic | 35.0% | |
| CCACCTTAAAAATGAATTGC+AGG | + | chr1_1:49031702-49031721 | None:intergenic | 35.0% | |
| !! | CCTGCAATTCATTTTTAAGG+TGG | - | chr1_1:49031699-49031718 | Msa0025670:intron | 35.0% |
| ! | TTTTGGACACATATTTGGCT+TGG | + | chr1_1:49031949-49031968 | None:intergenic | 35.0% |
| ! | TGCATGATGCTATCAGATTT+TGG | + | chr1_1:49031966-49031985 | None:intergenic | 35.0% |
| CGATCAAATCTATTGCTCAA+AGG | - | chr1_1:49032122-49032141 | Msa0025670:intron | 35.0% | |
| CAAATCTATTGCTCAAAGGA+AGG | - | chr1_1:49032126-49032145 | Msa0025670:intron | 35.0% | |
| TCATACATTACACAGAAGGA+CGG | + | chr1_1:49032194-49032213 | None:intergenic | 35.0% | |
| ACTCTCATACATTACACAGA+AGG | + | chr1_1:49032198-49032217 | None:intergenic | 35.0% | |
| ATGTGGCTAAGCAAATTGTA+TGG | + | chr1_1:49032225-49032244 | None:intergenic | 35.0% | |
| ! | CTTGCATTTTCTTGTCCTAA+TGG | - | chr1_1:49032398-49032417 | Msa0025670:CDS | 35.0% |
| CTATCACAATGAGGTTTAGA+GGG | + | chr1_1:49032707-49032726 | None:intergenic | 35.0% | |
| TCTATCACAATGAGGTTTAG+AGG | + | chr1_1:49032708-49032727 | None:intergenic | 35.0% | |
| TGCATACTTCTATCACAATG+AGG | + | chr1_1:49032716-49032735 | None:intergenic | 35.0% | |
| AACAAGAACCTGGAAATACA+AGG | + | chr1_1:49032876-49032895 | None:intergenic | 35.0% | |
| GATTGAGGATCCATCTTTAT+TGG | + | chr1_1:49032959-49032978 | None:intergenic | 35.0% | |
| ACTAGTGTTATAGACCATGA+TGG | - | chr1_1:49032983-49033002 | Msa0025670:intron | 35.0% | |
| !! | TTATAGACCATGATGGATCA+AGG | - | chr1_1:49032990-49033009 | Msa0025670:intron | 35.0% |
| ! | TTTAGAACCTTGATCCATCA+TGG | + | chr1_1:49033000-49033019 | None:intergenic | 35.0% |
| TTGTTATCGGAATAAGCCTA+TGG | - | chr1_1:49033219-49033238 | Msa0025670:intron | 35.0% | |
| ! | TACCCAGGAAATCAAGATTT+TGG | - | chr1_1:49033358-49033377 | Msa0025670:intron | 35.0% |
| GACCAAAATCTTGATTTCCT+GGG | + | chr1_1:49033363-49033382 | None:intergenic | 35.0% | |
| AGACCAAAATCTTGATTTCC+TGG | + | chr1_1:49033364-49033383 | None:intergenic | 35.0% | |
| !! | GAAATCAAGATTTTGGTCTG+CGG | - | chr1_1:49033365-49033384 | Msa0025670:intron | 35.0% |
| GATACAGTTGCAATTCGTTT+AGG | - | chr1_1:49033459-49033478 | Msa0025670:intron | 35.0% | |
| AGTAGATAGATGATGCATTC+TGG | - | chr1_1:49033667-49033686 | Msa0025670:intron | 35.0% | |
| TCAGTTTGACACAAACACTA+TGG | - | chr1_1:49033786-49033805 | Msa0025670:intron | 35.0% | |
| ! | TGTTACTTCCAGAATATACC+CGG | + | chr1_1:49033918-49033937 | None:intergenic | 35.0% |
| !! | TGTCAATTTTGACAGCAACA+TGG | - | chr1_1:49034158-49034177 | Msa0025670:intron | 35.0% |
| AACTAATCCTTTCACATACG+TGG | + | chr1_1:49034331-49034350 | None:intergenic | 35.0% | |
| CACAAAAAATGACTGAGAAG+AGG | + | chr1_1:49034505-49034524 | None:intergenic | 35.0% | |
| !!! | CTCTTCTCAGTCATTTTTTG+TGG | - | chr1_1:49034503-49034522 | Msa0025670:CDS | 35.0% |
| TACTTTCAGCTCAGCTGAAA+AGG | + | chr1_1:49025402-49025421 | None:intergenic | 40.0% | |
| TTCAGCTGAGCTGAAAGTAA+AGG | - | chr1_1:49025403-49025422 | Msa0025670:three_prime_UTR | 40.0% | |
| GAAATAACATAGCCAGAGAG+TGG | + | chr1_1:49025474-49025493 | None:intergenic | 40.0% | |
| AGAGATGTGTGAAGCAGTTT+GGG | + | chr1_1:49025496-49025515 | None:intergenic | 40.0% | |
| !! | TATGCACTTGTTGTTGGTGT+TGG | + | chr1_1:49025528-49025547 | None:intergenic | 40.0% |
| AAAGGTGGAAATGAGTGAGA+GGG | + | chr1_1:49025586-49025605 | None:intergenic | 40.0% | |
| !! | TCATTTTCAGGAGAAGTCGA+AGG | - | chr1_1:49025739-49025758 | Msa0025670:three_prime_UTR | 40.0% |
| GAAATTGACGAATGTCAGAG+CGG | + | chr1_1:49025785-49025804 | None:intergenic | 40.0% | |
| GCTTAAAAGCTCCTTAGTAG+AGG | + | chr1_1:49025841-49025860 | None:intergenic | 40.0% | |
| ! | ACTAAGGAGCTTTTAAGCCA+CGG | - | chr1_1:49025843-49025862 | Msa0025670:three_prime_UTR | 40.0% |
| !!! | GCATGCAATTTTGCCACTTT+AGG | + | chr1_1:49026255-49026274 | None:intergenic | 40.0% |
| AGTGGCAAAATTGCATGCTT+TGG | - | chr1_1:49026257-49026276 | Msa0025670:intron | 40.0% | |
| TACAAATGACCTCTAGTAGG+GGG | - | chr1_1:49026728-49026747 | Msa0025670:intron | 40.0% | |
| GGATGCTGCAAATGATATTG+AGG | - | chr1_1:49026931-49026950 | Msa0025670:intron | 40.0% | |
| AATATCCGAGGATTCTACAG+GGG | + | chr1_1:49027179-49027198 | None:intergenic | 40.0% | |
| ! | AGTGATCTTTGAGTTCACCT+AGG | + | chr1_1:49027219-49027238 | None:intergenic | 40.0% |
| ! | CTCTAAAGAAGTCAACAACG+TGG | - | chr1_1:49027237-49027256 | Msa0025670:intron | 40.0% |
| GATTTAGGTAGTTCAAGCGA+AGG | - | chr1_1:49027304-49027323 | Msa0025670:intron | 40.0% | |
| TTTCTGTTGGCATGGAACTT+TGG | + | chr1_1:49027351-49027370 | None:intergenic | 40.0% | |
| TCCATGCCAACAGAAATTTC+TGG | - | chr1_1:49027355-49027374 | Msa0025670:intron | 40.0% | |
| ACCAGAAATTTCTGTTGGCA+TGG | + | chr1_1:49027359-49027378 | None:intergenic | 40.0% | |
| ! | TCATTTGAGACAACACGGTA+TGG | - | chr1_1:49027385-49027404 | Msa0025670:intron | 40.0% |
| AGAATGCGATGACGCTTTAA+TGG | - | chr1_1:49027414-49027433 | Msa0025670:intron | 40.0% | |
| GAATGCGATGACGCTTTAAT+GGG | - | chr1_1:49027415-49027434 | Msa0025670:intron | 40.0% | |
| AGAGAAAGAGTTCAGTCGTT+TGG | - | chr1_1:49027531-49027550 | Msa0025670:intron | 40.0% | |
| ! | GACAAGTTGAATGAAGTGTC+GGG | + | chr1_1:49027724-49027743 | None:intergenic | 40.0% |
| TCAACTTGTCTATGGAGGAA+AGG | - | chr1_1:49027734-49027753 | Msa0025670:CDS | 40.0% | |
| CAACTTGTCTATGGAGGAAA+GGG | - | chr1_1:49027735-49027754 | Msa0025670:CDS | 40.0% | |
| AGGCATTCATCACAACGATA+TGG | + | chr1_1:49027822-49027841 | None:intergenic | 40.0% | |
| ! | TTCAACTGTCAAAGGCATAG+TGG | + | chr1_1:49027846-49027865 | None:intergenic | 40.0% |
| TCACAAGCTTCAACTGTCAA+AGG | + | chr1_1:49027854-49027873 | None:intergenic | 40.0% | |
| CAAACAAATATGGGACTGAC+AGG | + | chr1_1:49027956-49027975 | None:intergenic | 40.0% | |
| AGTTTAGTGAATGGCCAGTA+TGG | + | chr1_1:49028565-49028584 | None:intergenic | 40.0% | |
| ATACTTAAACCACACAGCCA+GGG | - | chr1_1:49028679-49028698 | Msa0025670:intron | 40.0% | |
| TCCATAAAATGCATTCCCTC+CGG | + | chr1_1:49029027-49029046 | None:intergenic | 40.0% | |
| CATGTCTCTCACATTGCAAA+AGG | - | chr1_1:49029108-49029127 | Msa0025670:CDS | 40.0% | |
| CATTGTTATCTTCAGGTGGA+TGG | + | chr1_1:49029200-49029219 | None:intergenic | 40.0% | |
| ATGGCATTGTTATCTTCAGG+TGG | + | chr1_1:49029204-49029223 | None:intergenic | 40.0% | |
| ACCTGAAGATAACAATGCCA+TGG | - | chr1_1:49029203-49029222 | Msa0025670:intron | 40.0% | |
| AACAATGCCATGGCACATAA+TGG | - | chr1_1:49029213-49029232 | Msa0025670:intron | 40.0% | |
| ACAATGCCATGGCACATAAT+GGG | - | chr1_1:49029214-49029233 | Msa0025670:intron | 40.0% | |
| ! | TCCAATCAAGTTGTTCCATC+TGG | - | chr1_1:49029249-49029268 | Msa0025670:intron | 40.0% |
| TCCAGATGGAACAACTTGAT+TGG | + | chr1_1:49029253-49029272 | None:intergenic | 40.0% | |
| AGTTGTTCCATCTGGAAAGT+TGG | - | chr1_1:49029257-49029276 | Msa0025670:intron | 40.0% | |
| ! | GGCTGACTAAATTACGCTTT+TGG | - | chr1_1:49029638-49029657 | Msa0025670:intron | 40.0% |
| TAAGACACTTTCGTCCCTTA+AGG | + | chr1_1:49029913-49029932 | None:intergenic | 40.0% | |
| CAACCCTCTGTTGTTAATAG+CGG | - | chr1_1:49030110-49030129 | Msa0025670:intron | 40.0% | |
| !! | CTTCTTAACTTGTGCCCTAA+GGG | - | chr1_1:49030667-49030686 | Msa0025670:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTTA+GGG | + | chr1_1:49030684-49030703 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTT+AGG | + | chr1_1:49030685-49030704 | None:intergenic | 40.0% |
| CACCCAATAGCATTTGCAAA+AGG | + | chr1_1:49030894-49030913 | None:intergenic | 40.0% | |
| GCTGAAAGAACAGATTGAGA+AGG | - | chr1_1:49030944-49030963 | Msa0025670:intron | 40.0% | |
| ! | TATGCGTAAGCTTTGTGACT+AGG | - | chr1_1:49031353-49031372 | Msa0025670:intron | 40.0% |
| GGATCTAGCATCAGATCAAA+AGG | + | chr1_1:49031662-49031681 | None:intergenic | 40.0% | |
| AAATCAGATGGGTAATCGCT+TGG | - | chr1_1:49031763-49031782 | Msa0025670:intron | 40.0% | |
| ! | GTAATCGCTTGGTCTTCTAA+AGG | - | chr1_1:49031774-49031793 | Msa0025670:intron | 40.0% |
| ATACATTACACAGAAGGACG+GGG | + | chr1_1:49032192-49032211 | None:intergenic | 40.0% | |
| CATACATTACACAGAAGGAC+GGG | + | chr1_1:49032193-49032212 | None:intergenic | 40.0% | |
| TTTGTCTGTCTTGCAAACCA+AGG | - | chr1_1:49032264-49032283 | Msa0025670:CDS | 40.0% | |
| AAAAGATGCAGAGTTGCATG+AGG | - | chr1_1:49032327-49032346 | Msa0025670:CDS | 40.0% | |
| AGAAAGTCTTTCAGGACTCA+AGG | - | chr1_1:49032354-49032373 | Msa0025670:CDS | 40.0% | |
| CTCAAGGAGGTAATGCATTT+AGG | - | chr1_1:49032370-49032389 | Msa0025670:CDS | 40.0% | |
| AAGGAGGTAATGCATTTAGG+AGG | - | chr1_1:49032373-49032392 | Msa0025670:CDS | 40.0% | |
| !!! | GCAGTTTTGGATAGGAATGT+TGG | - | chr1_1:49032443-49032462 | Msa0025670:CDS | 40.0% |
| ATGAGTTTAGGGACTGTATG+TGG | + | chr1_1:49032501-49032520 | None:intergenic | 40.0% | |
| ! | GACAGCGCTCCTTTAAATTT+TGG | - | chr1_1:49032677-49032696 | Msa0025670:CDS | 40.0% |
| !! | GAGGGAGTGCCAAAATTTAA+AGG | + | chr1_1:49032689-49032708 | None:intergenic | 40.0% |
| ACTGTGTTCCTTGTATTTCC+AGG | - | chr1_1:49032865-49032884 | Msa0025670:CDS | 40.0% | |
| CACAGAATTCAACAAGAACC+TGG | + | chr1_1:49032886-49032905 | None:intergenic | 40.0% | |
| CAGGTTCTTGTTGAATTCTG+TGG | - | chr1_1:49032884-49032903 | Msa0025670:CDS | 40.0% | |
| CTCTCTATCACATATGCCAT+AGG | + | chr1_1:49033238-49033257 | None:intergenic | 40.0% | |
| AAGATTCGCAAGAATTGACC+TGG | - | chr1_1:49033296-49033315 | Msa0025670:intron | 40.0% | |
| GCTTTATCCTGGTGTATATG+AGG | - | chr1_1:49033395-49033414 | Msa0025670:intron | 40.0% | |
| !! | AATTTGTTGTTGATGGCGAC+TGG | - | chr1_1:49033585-49033604 | Msa0025670:intron | 40.0% |
| ! | TAGATGATGCATTCTGGTTG+AGG | - | chr1_1:49033673-49033692 | Msa0025670:intron | 40.0% |
| ! | TTGATGGTCATGAAGCAATG+TGG | + | chr1_1:49033741-49033760 | None:intergenic | 40.0% |
| TGGAGAATTTGGCAGAATCA+CGG | + | chr1_1:49033869-49033888 | None:intergenic | 40.0% | |
| GTTTGGATAGGTGGAGAATT+TGG | + | chr1_1:49033880-49033899 | None:intergenic | 40.0% | |
| CATTTAGTGCAGGTTTGGAT+AGG | + | chr1_1:49033892-49033911 | None:intergenic | 40.0% | |
| AAACCTGCACTAAATGTTCC+CGG | - | chr1_1:49033896-49033915 | Msa0025670:intron | 40.0% | |
| AAATGTTCCCGGGTATATTC+TGG | - | chr1_1:49033907-49033926 | Msa0025670:intron | 40.0% | |
| GTTACTTCCAGAATATACCC+GGG | + | chr1_1:49033917-49033936 | None:intergenic | 40.0% | |
| TGAACTGTTGTAGGGTACAT+AGG | - | chr1_1:49034100-49034119 | Msa0025670:intron | 40.0% | |
| ACATCTTCCACGTATGTGAA+AGG | - | chr1_1:49034321-49034340 | Msa0025670:intron | 40.0% | |
| !!! | TAGTTTTAGTAAGAGGCCAC+AGG | - | chr1_1:49034405-49034424 | Msa0025670:intron | 40.0% |
| TCTCCTAATAGATACAGCGA+TGG | + | chr1_1:49034455-49034474 | None:intergenic | 40.0% | |
| GGAGAAAACGATTGCTTCAT+TGG | - | chr1_1:49034470-49034489 | Msa0025670:CDS | 40.0% | |
| AAAATGACTGAGAAGAGGAG+AGG | + | chr1_1:49034500-49034519 | None:intergenic | 40.0% | |
| ! | CATTTTCAAAGTGGCTCACA+AGG | - | chr1_1:49034528-49034547 | Msa0025670:CDS | 40.0% |
| ATAACATAGCCAGAGAGTGG+AGG | + | chr1_1:49025471-49025490 | None:intergenic | 45.0% | |
| CAGAGATGTGTGAAGCAGTT+TGG | + | chr1_1:49025497-49025516 | None:intergenic | 45.0% | |
| AACTGCTTCACACATCTCTG+TGG | - | chr1_1:49025497-49025516 | Msa0025670:three_prime_UTR | 45.0% | |
| !! | ATAGTGGATTGGTGTTGCGT+TGG | + | chr1_1:49025557-49025576 | None:intergenic | 45.0% |
| !! | GAGGGAGAGAAATAGTGGAT+TGG | + | chr1_1:49025568-49025587 | None:intergenic | 45.0% |
| AGTGAGAGGGAGAGAAATAG+TGG | + | chr1_1:49025573-49025592 | None:intergenic | 45.0% | |
| GAAAGGTGGAAATGAGTGAG+AGG | + | chr1_1:49025587-49025606 | None:intergenic | 45.0% | |
| !! | AAGAAGAAGGTGTTACCGTG+TGG | + | chr1_1:49025630-49025649 | None:intergenic | 45.0% |
| CGTCAATTTCTCGACGAAGT+TGG | - | chr1_1:49025795-49025814 | Msa0025670:three_prime_UTR | 45.0% | |
| !! | CACTTTAGGCACCGAAAAGT+AGG | + | chr1_1:49026241-49026260 | None:intergenic | 45.0% |
| !!! | CTACTTTTCGGTGCCTAAAG+TGG | - | chr1_1:49026239-49026258 | Msa0025670:intron | 45.0% |
| TTGCATGCTTTGGTCACTCT+AGG | - | chr1_1:49026267-49026286 | Msa0025670:intron | 45.0% | |
| ACACATAATCCCCCTACTAG+AGG | + | chr1_1:49026740-49026759 | None:intergenic | 45.0% | |
| ACCTGGCAAACATTGTCAGA+CGG | - | chr1_1:49026816-49026835 | Msa0025670:intron | 45.0% | |
| GGTCAGAATGAGAAGGTTGA+CGG | - | chr1_1:49027052-49027071 | Msa0025670:CDS | 45.0% | |
| TTATTCATGGAGGATGGCCT+AGG | - | chr1_1:49027199-49027218 | Msa0025670:intron | 45.0% | |
| TCCATTGACAGTTCCTTCCA+CGG | - | chr1_1:49027462-49027481 | Msa0025670:intron | 45.0% | |
| ! | TTGGAATGGTTTTCCGTGGA+AGG | + | chr1_1:49027478-49027497 | None:intergenic | 45.0% |
| !! | AGTGTTGGAATGGTTTTCCG+TGG | + | chr1_1:49027482-49027501 | None:intergenic | 45.0% |
| TGTCCATAGAGCAAAAGGAC+TGG | - | chr1_1:49027569-49027588 | Msa0025670:intron | 45.0% | |
| GTCCATAGAGCAAAAGGACT+GGG | - | chr1_1:49027570-49027589 | Msa0025670:intron | 45.0% | |
| TCCATAGAGCAAAAGGACTG+GGG | - | chr1_1:49027571-49027590 | Msa0025670:intron | 45.0% | |
| GGAGATCTAGATCCAGTTGA+AGG | - | chr1_1:49027778-49027797 | Msa0025670:intron | 45.0% | |
| ! | ACTGTCAAAGGCATAGTGGT+AGG | + | chr1_1:49027842-49027861 | None:intergenic | 45.0% |
| GGAAACTAGACAAGCTAACC+AGG | + | chr1_1:49028090-49028109 | None:intergenic | 45.0% | |
| ! | TTGGGCTTTAGTCAAAGCAG+TGG | - | chr1_1:49028143-49028162 | Msa0025670:intron | 45.0% |
| TACTTGTGTGGAGTCGAAGT+AGG | + | chr1_1:49028370-49028389 | None:intergenic | 45.0% | |
| CATACTTAAACCACACAGCC+AGG | - | chr1_1:49028678-49028697 | Msa0025670:intron | 45.0% | |
| !!! | CAGCTACATCACTTTTTCCC+TGG | + | chr1_1:49028699-49028718 | None:intergenic | 45.0% |
| CAGGGAAAAAGTGATGTAGC+TGG | - | chr1_1:49028697-49028716 | Msa0025670:intron | 45.0% | |
| TGATGTAGCTGGTGCAAATG+TGG | - | chr1_1:49028708-49028727 | Msa0025670:intron | 45.0% | |
| CAATGACTTTGACTCACTGG+CGG | + | chr1_1:49028847-49028866 | None:intergenic | 45.0% | |
| TGGCTTATAATTGAGACCGG+AGG | - | chr1_1:49029008-49029027 | Msa0025670:intron | 45.0% | |
| GGCTTATAATTGAGACCGGA+GGG | - | chr1_1:49029009-49029028 | Msa0025670:intron | 45.0% | |
| ! | ACCGGAGGGAATGCATTTTA+TGG | - | chr1_1:49029023-49029042 | Msa0025670:intron | 45.0% |
| GCCATGGCATTGTTATCTTC+AGG | + | chr1_1:49029207-49029226 | None:intergenic | 45.0% | |
| TGAGTTCCCATTATGTGCCA+TGG | + | chr1_1:49029223-49029242 | None:intergenic | 45.0% | |
| CAAACACTTACCAAAGAGGC+TGG | + | chr1_1:49029284-49029303 | None:intergenic | 45.0% | |
| CAGCCTCTTTGGTAAGTGTT+TGG | - | chr1_1:49029282-49029301 | Msa0025670:intron | 45.0% | |
| !!! | CTGAGATCCCCTTTTTTACC+TGG | - | chr1_1:49029362-49029381 | Msa0025670:intron | 45.0% |
| GGATGATCACATGCTACATG+AGG | - | chr1_1:49029402-49029421 | Msa0025670:intron | 45.0% | |
| TGACAAGGATTTGGATGCTG+AGG | - | chr1_1:49029441-49029460 | Msa0025670:intron | 45.0% | |
| !!! | GGTCAAAGCGCCTCTTTTTT+GGG | - | chr1_1:49030256-49030275 | Msa0025670:intron | 45.0% |
| !!! | AAAGCGCCTCTTTTTTGGGT+CGG | - | chr1_1:49030260-49030279 | Msa0025670:intron | 45.0% |
| !! | GCTTCTTAACTTGTGCCCTA+AGG | - | chr1_1:49030666-49030685 | Msa0025670:intron | 45.0% |
| CTGTTGTCAAAGCGGAAAAG+CGG | + | chr1_1:49030795-49030814 | None:intergenic | 45.0% | |
| TATTGGGTGCTAGTACCAGA+AGG | - | chr1_1:49030905-49030924 | Msa0025670:intron | 45.0% | |
| AGAAGGAGTTGGAACTGTCT+CGG | - | chr1_1:49030922-49030941 | Msa0025670:intron | 45.0% | |
| GAAGCATAAACAACGCTTGC+AGG | + | chr1_1:49031241-49031260 | None:intergenic | 45.0% | |
| CGCATAAACAACTCAAAGCC+AGG | + | chr1_1:49031339-49031358 | None:intergenic | 45.0% | |
| GAGGCTGAAGAAAGTCTTTC+AGG | - | chr1_1:49032346-49032365 | Msa0025670:CDS | 45.0% | |
| AAGTCTTTCAGGACTCAAGG+AGG | - | chr1_1:49032357-49032376 | Msa0025670:CDS | 45.0% | |
| CACCAGAATCCTGCCTTTAT+GGG | - | chr1_1:49032558-49032577 | Msa0025670:CDS | 45.0% | |
| ACCAGAATCCTGCCTTTATG+GGG | - | chr1_1:49032559-49032578 | Msa0025670:CDS | 45.0% | |
| CTAAAGACACAGCCCCATAA+AGG | + | chr1_1:49032574-49032593 | None:intergenic | 45.0% | |
| CTTGTTGAATTCTGTGGCGA+CGG | - | chr1_1:49032890-49032909 | Msa0025670:CDS | 45.0% | |
| CTGGCATCACCCAATAAAGA+TGG | - | chr1_1:49032946-49032965 | Msa0025670:CDS | 45.0% | |
| ACTGGAGAACAGATCCACAA+AGG | - | chr1_1:49033603-49033622 | Msa0025670:intron | 45.0% | |
| CTGGAGAACAGATCCACAAA+GGG | - | chr1_1:49033604-49033623 | Msa0025670:intron | 45.0% | |
| TTAGTGCAGGTTTGGATAGG+TGG | + | chr1_1:49033889-49033908 | None:intergenic | 45.0% | |
| GGGAACATTTAGTGCAGGTT+TGG | + | chr1_1:49033897-49033916 | None:intergenic | 45.0% | |
| AACCTGCACTAAATGTTCCC+GGG | - | chr1_1:49033897-49033916 | Msa0025670:intron | 45.0% | |
| TTGACAGCAACATGGAAGAG+AGG | - | chr1_1:49034166-49034185 | Msa0025670:intron | 45.0% | |
| TGACAGCAACATGGAAGAGA+GGG | - | chr1_1:49034167-49034186 | Msa0025670:intron | 45.0% | |
| CCTAATAGATACAGCGATGG+TGG | + | chr1_1:49034452-49034471 | None:intergenic | 45.0% | |
| CCACCATCGCTGTATCTATT+AGG | - | chr1_1:49034449-49034468 | Msa0025670:CDS | 45.0% | |
| !! | TAAAATGAAAAAAAAAATAT+AGG | + | chr1_1:49029755-49029774 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTCATTTTATTT+TGG | - | chr1_1:49029758-49029777 | Msa0025670:intron | 5.0% |
| !!! | GTATTTTAATATTAAATATA+GGG | + | chr1_1:49030521-49030540 | None:intergenic | 5.0% |
| !! | AAAAAATATACTAAAATATA+GGG | + | chr1_1:49030491-49030510 | None:intergenic | 5.0% |
| CTGAAAAGGAACCCAGGACA+AGG | + | chr1_1:49025388-49025407 | None:intergenic | 50.0% | |
| AAATGGGTACCTCCACTCTC+TGG | - | chr1_1:49025459-49025478 | Msa0025670:three_prime_UTR | 50.0% | |
| !!! | TGGTTTTGGAAGCGGAAAGG+TGG | + | chr1_1:49025601-49025620 | None:intergenic | 50.0% |
| !!! | TGGTGGTTTTGGAAGCGGAA+AGG | + | chr1_1:49025604-49025623 | None:intergenic | 50.0% |
| !!! | GGTTGTGGTGGTTTTGGAAG+CGG | + | chr1_1:49025609-49025628 | None:intergenic | 50.0% |
| CCAAAACCACCACAACCACA+CGG | - | chr1_1:49025612-49025631 | Msa0025670:three_prime_UTR | 50.0% | |
| ! | AAGGTGTTACCGTGTGGTTG+TGG | + | chr1_1:49025624-49025643 | None:intergenic | 50.0% |
| GTCAGAGCGGATCTCATCAT+CGG | + | chr1_1:49025772-49025791 | None:intergenic | 50.0% | |
| !! | GACGAAGTTGGTCTTCCTCA+TGG | - | chr1_1:49025807-49025826 | Msa0025670:three_prime_UTR | 50.0% |
| TGGCCACATTCCCTCTACTA+AGG | - | chr1_1:49025827-49025846 | Msa0025670:three_prime_UTR | 50.0% | |
| GCTCCTTAGTAGAGGGAATG+TGG | + | chr1_1:49025833-49025852 | None:intergenic | 50.0% | |
| ! | AGGAGCTTTTAAGCCACGGA+AGG | - | chr1_1:49025847-49025866 | Msa0025670:three_prime_UTR | 50.0% |
| TTGCGTCTCGCGGTAACTAA+AGG | - | chr1_1:49025992-49026011 | Msa0025670:intron | 50.0% | |
| TAGCAAGGGGACTCCCTAAA+AGG | + | chr1_1:49026674-49026693 | None:intergenic | 50.0% | |
| TCCGTCTGACAATGTTTGCC+AGG | + | chr1_1:49026820-49026839 | None:intergenic | 50.0% | |
| GCAAACATTGTCAGACGGAG+AGG | - | chr1_1:49026821-49026840 | Msa0025670:intron | 50.0% | |
| GAATGAGAAGGTTGACGGCT+CGG | - | chr1_1:49027057-49027076 | Msa0025670:CDS | 50.0% | |
| TTTCTTCAGGGGGACAGTTC+TGG | - | chr1_1:49027106-49027125 | Msa0025670:CDS | 50.0% | |
| AGAAGTCAACAACGTGGCAG+AGG | - | chr1_1:49027243-49027262 | Msa0025670:intron | 50.0% | |
| GAAGTCAACAACGTGGCAGA+GGG | - | chr1_1:49027244-49027263 | Msa0025670:intron | 50.0% | |
| AAGTCAACAACGTGGCAGAG+GGG | - | chr1_1:49027245-49027264 | Msa0025670:intron | 50.0% | |
| CAGTGGTCACTTCAGTTGGA+TGG | + | chr1_1:49027276-49027295 | None:intergenic | 50.0% | |
| TCCAACTGAAGTGACCACTG+TGG | - | chr1_1:49027276-49027295 | Msa0025670:intron | 50.0% | |
| TCCACAGTGGTCACTTCAGT+TGG | + | chr1_1:49027280-49027299 | None:intergenic | 50.0% | |
| TCCGTGGAAGGAACTGTCAA+TGG | + | chr1_1:49027466-49027485 | None:intergenic | 50.0% | |
| ! | ACCCCAGTCCTTTTGCTCTA+TGG | + | chr1_1:49027575-49027594 | None:intergenic | 50.0% |
| GATGATGTTCCCACAACCTC+TGG | - | chr1_1:49027634-49027653 | Msa0025670:intron | 50.0% | |
| AACTCAGAGCCAGAGGTTGT+GGG | + | chr1_1:49027646-49027665 | None:intergenic | 50.0% | |
| AAACTCAGAGCCAGAGGTTG+TGG | + | chr1_1:49027647-49027666 | None:intergenic | 50.0% | |
| CTCAGAAAACTCAGAGCCAG+AGG | + | chr1_1:49027653-49027672 | None:intergenic | 50.0% | |
| !!! | TCACTTTTTCCCTGGCTGTG+TGG | + | chr1_1:49028691-49028710 | None:intergenic | 50.0% |
| CCTAGTGGCATATCAACAGC+AGG | + | chr1_1:49029174-49029193 | None:intergenic | 50.0% | |
| CCTGCTGTTGATATGCCACT+AGG | - | chr1_1:49029171-49029190 | Msa0025670:intron | 50.0% | |
| GAAAGTTGGACCAGCCTCTT+TGG | - | chr1_1:49029271-49029290 | Msa0025670:intron | 50.0% | |
| CGGCCGCTATTAACAACAGA+GGG | + | chr1_1:49030116-49030135 | None:intergenic | 50.0% | |
| !!! | GTAGGCTGTTTTTTGCCGCT+CGG | + | chr1_1:49030141-49030160 | None:intergenic | 50.0% |
| AGGGAAAAGCGGGTCAATAG+CGG | - | chr1_1:49030190-49030209 | Msa0025670:intron | 50.0% | |
| !!! | GGGTCAAAGCGCCTCTTTTT+TGG | - | chr1_1:49030255-49030274 | Msa0025670:intron | 50.0% |
| TGTGCTCCGACCCAAAAAAG+AGG | + | chr1_1:49030269-49030288 | None:intergenic | 50.0% | |
| TTGGGTCGGAGCACAAAACA+AGG | - | chr1_1:49030274-49030293 | Msa0025670:intron | 50.0% | |
| ACGGGTCACATGGCTGAAAT+GGG | + | chr1_1:49030327-49030346 | None:intergenic | 50.0% | |
| AACGGGTCACATGGCTGAAA+TGG | + | chr1_1:49030328-49030347 | None:intergenic | 50.0% | |
| TGGGTCAAAAACGGGTCACA+TGG | + | chr1_1:49030337-49030356 | None:intergenic | 50.0% | |
| GGGTCGTATGGGTCAAAAAC+GGG | + | chr1_1:49030345-49030364 | None:intergenic | 50.0% | |
| CGGGTCGTATGGGTCAAAAA+CGG | + | chr1_1:49030346-49030365 | None:intergenic | 50.0% | |
| ! | CGTTTTTGACCCATACGACC+CGG | - | chr1_1:49030344-49030363 | Msa0025670:intron | 50.0% |
| ! | CAGTATGAAAGGCACGAACC+GGG | + | chr1_1:49030365-49030384 | None:intergenic | 50.0% |
| ! | CCAGTATGAAAGGCACGAAC+CGG | + | chr1_1:49030366-49030385 | None:intergenic | 50.0% |
| CGGTTCGTGCCTTTCATACT+GGG | - | chr1_1:49030364-49030383 | Msa0025670:intron | 50.0% | |
| GTGCTAGTACCAGAAGGAGT+TGG | - | chr1_1:49030911-49030930 | Msa0025670:intron | 50.0% | |
| GAGACAGTTCCAACTCCTTC+TGG | + | chr1_1:49030923-49030942 | None:intergenic | 50.0% | |
| CAGGCAAGGTTGTCAGAATC+GGG | + | chr1_1:49031683-49031702 | None:intergenic | 50.0% | |
| GCAGGCAAGGTTGTCAGAAT+CGG | + | chr1_1:49031684-49031703 | None:intergenic | 50.0% | |
| !! | GGACACATATTTGGCTTGGC+AGG | + | chr1_1:49031945-49031964 | None:intergenic | 50.0% |
| TTACACAGAAGGACGGGGAA+GGG | + | chr1_1:49032187-49032206 | None:intergenic | 50.0% | |
| ATTACACAGAAGGACGGGGA+AGG | + | chr1_1:49032188-49032207 | None:intergenic | 50.0% | |
| TGTCTTGCAAACCAAGGCAG+AGG | - | chr1_1:49032270-49032289 | Msa0025670:CDS | 50.0% | |
| ! | GCTGATTTCTTCCTCTGCCT+TGG | + | chr1_1:49032284-49032303 | None:intergenic | 50.0% |
| CCATAAAGGCAGGATTCTGG+TGG | + | chr1_1:49032560-49032579 | None:intergenic | 50.0% | |
| CCACCAGAATCCTGCCTTTA+TGG | - | chr1_1:49032557-49032576 | Msa0025670:CDS | 50.0% | |
| CGCTGTCGCTGCTTCTTATA+CGG | + | chr1_1:49032664-49032683 | None:intergenic | 50.0% | |
| !! | CTAGCTACTGACTCCCTTTG+TGG | + | chr1_1:49033620-49033639 | None:intergenic | 50.0% |
| CAAAGGGAGTCAGTAGCTAG+AGG | - | chr1_1:49033620-49033639 | Msa0025670:intron | 50.0% | |
| ! | AGAATCACGGTGTGTCACTG+TGG | + | chr1_1:49033856-49033875 | None:intergenic | 50.0% |
| TACCCGGGAACATTTAGTGC+AGG | + | chr1_1:49033902-49033921 | None:intergenic | 50.0% | |
| GACAGCAACATGGAAGAGAG+GGG | - | chr1_1:49034168-49034187 | Msa0025670:intron | 50.0% | |
| GCTCAGCTGAAAAGGAACCC+AGG | + | chr1_1:49025394-49025413 | None:intergenic | 55.0% | |
| ! | CCGTGTGGTTGTGGTGGTTT+TGG | + | chr1_1:49025615-49025634 | None:intergenic | 55.0% |
| GTGTTACCGTGTGGTTGTGG+TGG | + | chr1_1:49025621-49025640 | None:intergenic | 55.0% | |
| GTAGAGGGAATGTGGCCATG+AGG | + | chr1_1:49025825-49025844 | None:intergenic | 55.0% | |
| ! | AAGGTTGACGGCTCGGATGA+TGG | - | chr1_1:49027064-49027083 | Msa0025670:CDS | 55.0% |
| TTCCGCCCCTGTAGAATCCT+CGG | - | chr1_1:49027171-49027190 | Msa0025670:intron | 55.0% | |
| ATCCGAGGATTCTACAGGGG+CGG | + | chr1_1:49027176-49027195 | None:intergenic | 55.0% | |
| GGAGCTACATAGAGCTCAGG+GGG | + | chr1_1:49028826-49028845 | None:intergenic | 55.0% | |
| CGGAGCTACATAGAGCTCAG+GGG | + | chr1_1:49028827-49028846 | None:intergenic | 55.0% | |
| GCGGAGCTACATAGAGCTCA+GGG | + | chr1_1:49028828-49028847 | None:intergenic | 55.0% | |
| TCAGGTGGATGGACACCTAG+TGG | + | chr1_1:49029189-49029208 | None:intergenic | 55.0% | |
| ! | GGCTGGTCCAACTTTCCAGA+TGG | + | chr1_1:49029267-49029286 | None:intergenic | 55.0% |
| GCGGCCGCTATTAACAACAG+AGG | + | chr1_1:49030117-49030136 | None:intergenic | 55.0% | |
| !!! | CTGTTTTTTGCCGCTCGGAG+CGG | + | chr1_1:49030136-49030155 | None:intergenic | 55.0% |
| ! | CTTTTCCCTAACGCGCGACT+CGG | + | chr1_1:49030179-49030198 | None:intergenic | 55.0% |
| AGTCGCGCGTTAGGGAAAAG+CGG | - | chr1_1:49030179-49030198 | Msa0025670:intron | 55.0% | |
| GGGAAAAGCGGGTCAATAGC+GGG | - | chr1_1:49030191-49030210 | Msa0025670:intron | 55.0% | |
| ! | CCGGTTCGTGCCTTTCATAC+TGG | - | chr1_1:49030363-49030382 | Msa0025670:intron | 55.0% |
| ! | TACCGCGCCGCGTCAATTTT+TGG | - | chr1_1:49030759-49030778 | Msa0025670:CDS | 55.0% |
| ! | ACCGCGCCGCGTCAATTTTT+GGG | - | chr1_1:49030760-49030779 | Msa0025670:CDS | 55.0% |
| GGCCACCCCAAAAATTGACG+CGG | + | chr1_1:49030769-49030788 | None:intergenic | 55.0% | |
| GCCCCATAAAGGCAGGATTC+TGG | + | chr1_1:49032563-49032582 | None:intergenic | 55.0% | |
| AGACACAGCCCCATAAAGGC+AGG | + | chr1_1:49032570-49032589 | None:intergenic | 55.0% | |
| TGGCGACGGTGATGTTGTTG+AGG | - | chr1_1:49032904-49032923 | Msa0025670:CDS | 55.0% | |
| CGACGGTGATGTTGTTGAGG+TGG | - | chr1_1:49032907-49032926 | Msa0025670:CDS | 55.0% | |
| GGTGATGTTGTTGAGGTGGC+TGG | - | chr1_1:49032911-49032930 | Msa0025670:CDS | 55.0% | |
| GAGGTGGCTGGTAGCTTCAA+TGG | - | chr1_1:49032923-49032942 | Msa0025670:CDS | 55.0% | |
| TGGCTGGTAGCTTCAATGGC+TGG | - | chr1_1:49032927-49032946 | Msa0025670:CDS | 55.0% | |
| !! | GATTTTGGTCTGCGGTGCTG+TGG | - | chr1_1:49033373-49033392 | Msa0025670:intron | 55.0% |
| GCACGCACCTCATATACACC+AGG | + | chr1_1:49033405-49033424 | None:intergenic | 55.0% | |
| ! | TTAGGCGTGGGCTGATAGTG+AGG | - | chr1_1:49034374-49034393 | Msa0025670:intron | 55.0% |
| ! | TAGATACAGCGATGGTGGCG+TGG | + | chr1_1:49034447-49034466 | None:intergenic | 55.0% |
| ! | CGGCTCGGATGATGGTACCA+CGG | - | chr1_1:49027072-49027091 | Msa0025670:CDS | 60.0% |
| GTCAAAGCAGTGGCGTTGCC+AGG | - | chr1_1:49028153-49028172 | Msa0025670:intron | 60.0% | |
| AGTGTGAACCCCCTGAGCCA+GGG | + | chr1_1:49028180-49028199 | None:intergenic | 60.0% | |
| AAGTGTGAACCCCCTGAGCC+AGG | + | chr1_1:49028181-49028200 | None:intergenic | 60.0% | |
| GGCGGAGCTACATAGAGCTC+AGG | + | chr1_1:49028829-49028848 | None:intergenic | 60.0% | |
| TTAATAGCGGCCGCTCCGAG+CGG | - | chr1_1:49030123-49030142 | Msa0025670:intron | 60.0% | |
| GTCGCGCGTTAGGGAAAAGC+GGG | - | chr1_1:49030180-49030199 | Msa0025670:intron | 60.0% | |
| !! | CGGGTCAATAGCGGGTTTCG+CGG | - | chr1_1:49030199-49030218 | Msa0025670:intron | 60.0% |
| ! | GAGGCGCTTTGACCCGCTAT+TGG | + | chr1_1:49030250-49030269 | None:intergenic | 60.0% |
| AGGCACGAACCGGGTCGTAT+GGG | + | chr1_1:49030356-49030375 | None:intergenic | 60.0% | |
| AAGGCACGAACCGGGTCGTA+TGG | + | chr1_1:49030357-49030376 | None:intergenic | 60.0% | |
| ! | GCGGGCGCTATTTCATGACG+CGG | + | chr1_1:49030727-49030746 | None:intergenic | 60.0% |
| AATTGACGCGGCGCGGTATG+CGG | + | chr1_1:49030757-49030776 | None:intergenic | 60.0% | |
| CCCCAAAAATTGACGCGGCG+CGG | + | chr1_1:49030764-49030783 | None:intergenic | 60.0% | |
| ! | CCGCGCCGCGTCAATTTTTG+GGG | - | chr1_1:49030761-49030780 | Msa0025670:CDS | 60.0% |
| !! | CGCCGCGTCAATTTTTGGGG+TGG | - | chr1_1:49030764-49030783 | Msa0025670:CDS | 60.0% |
| GTCAAAGCGGAAAAGCGGCG+CGG | + | chr1_1:49030790-49030809 | None:intergenic | 60.0% | |
| !! | GCGGTGCTGTGGCTTTATCC+TGG | - | chr1_1:49033384-49033403 | Msa0025670:intron | 60.0% |
| GTTGCCAGGACCCTGGCTCA+GGG | - | chr1_1:49028167-49028186 | Msa0025670:intron | 65.0% | |
| TTGCCAGGACCCTGGCTCAG+GGG | - | chr1_1:49028168-49028187 | Msa0025670:intron | 65.0% | |
| ! | GACTCGGTAGCGCTCTGACG+CGG | + | chr1_1:49030163-49030182 | None:intergenic | 65.0% |
| CGCTACCGAGTCGCGCGTTA+GGG | - | chr1_1:49030171-49030190 | Msa0025670:intron | 65.0% | |
| ATTGACGCGGCGCGGTATGC+GGG | + | chr1_1:49030756-49030775 | None:intergenic | 65.0% | |
| CAGTGGCGTTGCCAGGACCC+TGG | - | chr1_1:49028160-49028179 | Msa0025670:intron | 70.0% | |
| CGTTGCCAGGACCCTGGCTC+AGG | - | chr1_1:49028166-49028185 | Msa0025670:intron | 70.0% | |
| TGCCAGGACCCTGGCTCAGG+GGG | - | chr1_1:49028169-49028188 | Msa0025670:intron | 70.0% | |
| AACCCCCTGAGCCAGGGTCC+TGG | + | chr1_1:49028174-49028193 | None:intergenic | 70.0% | |
| CGGTAGCGCTCTGACGCGGT+AGG | + | chr1_1:49030159-49030178 | None:intergenic | 70.0% | |
| GCGCTACCGAGTCGCGCGTT+AGG | - | chr1_1:49030170-49030189 | Msa0025670:intron | 70.0% | |
| CGGGTTTCGCGGCCGCTATC+CGG | - | chr1_1:49030210-49030229 | Msa0025670:intron | 70.0% | |
| GTTTCGCGGCCGCTATCCGG+TGG | - | chr1_1:49030213-49030232 | Msa0025670:intron | 70.0% | |
| ATTGGTCCGCCCCGCTCCAC+CGG | + | chr1_1:49030232-49030251 | None:intergenic | 70.0% | |
| GGAGCGGGGCGGACCAATAG+CGG | - | chr1_1:49030234-49030253 | Msa0025670:intron | 70.0% | |
| GAGCGGGGCGGACCAATAGC+GGG | - | chr1_1:49030235-49030254 | Msa0025670:intron | 70.0% | |
| GCGGCCGCTATCCGGTGGAG+CGG | - | chr1_1:49030218-49030237 | Msa0025670:intron | 75.0% | |
| CGGCCGCTATCCGGTGGAGC+GGG | - | chr1_1:49030219-49030238 | Msa0025670:intron | 75.0% | |
| GGCCGCTATCCGGTGGAGCG+GGG | - | chr1_1:49030220-49030239 | Msa0025670:intron | 75.0% | |
| CGCCCCGCTCCACCGGATAG+CGG | + | chr1_1:49030225-49030244 | None:intergenic | 75.0% | |
| CGCTATCCGGTGGAGCGGGG+CGG | - | chr1_1:49030223-49030242 | Msa0025670:intron | 75.0% | |
| GCGGTATGCGGGCGCGTAGC+GGG | + | chr1_1:49030745-49030764 | None:intergenic | 75.0% | |
| CGCGGTATGCGGGCGCGTAG+CGG | + | chr1_1:49030746-49030765 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 49025385 | 49034662 | 49025385 | ID=Msa0025670;Name=Msa0025670 |
| chr1_1 | mRNA | 49025385 | 49034662 | 49025385 | ID=Msa0025670-mRNA-1;Parent=Msa0025670;Name=Msa0025670-mRNA-1;_AED=0.19;_eAED=0.19;_QI=76|0.91|0.92|1|0.91|0.92|13|593|626 |
| chr1_1 | exon | 49025385 | 49025934 | 49025385 | ID=Msa0025670-mRNA-1:exon:14145;Parent=Msa0025670-mRNA-1 |
| chr1_1 | exon | 49026325 | 49026466 | 49026325 | ID=Msa0025670-mRNA-1:exon:14144;Parent=Msa0025670-mRNA-1 |
| chr1_1 | exon | 49026631 | 49026682 | 49026631 | ID=Msa0025670-mRNA-1:exon:14143;Parent=Msa0025670-mRNA-1 |
| chr1_1 | exon | 49027036 | 49027160 | 49027036 | ID=Msa0025670-mRNA-1:exon:14142;Parent=Msa0025670-mRNA-1 |
| chr1_1 | exon | 49027669 | 49027788 | 49027669 | ID=Msa0025670-mRNA-1:exon:14141;Parent=Msa0025670-mRNA-1 |
| chr1_1 | exon | 49029076 | 49029129 | 49029076 | ID=Msa0025670-mRNA-1:exon:14140;Parent=Msa0025670-mRNA-1 |
| chr1_1 | exon | 49030457 | 49030507 | 49030457 | ID=Msa0025670-mRNA-1:exon:14139;Parent=Msa0025670-mRNA-1 |
| chr1_1 | exon | 49030585 | 49030645 | 49030585 | ID=Msa0025670-mRNA-1:exon:14138;Parent=Msa0025670-mRNA-1 |
| chr1_1 | exon | 49030755 | 49030878 | 49030755 | ID=Msa0025670-mRNA-1:exon:14137;Parent=Msa0025670-mRNA-1 |
| chr1_1 | exon | 49032248 | 49032994 | 49032248 | ID=Msa0025670-mRNA-1:exon:14136;Parent=Msa0025670-mRNA-1 |
| chr1_1 | exon | 49033082 | 49033236 | 49033082 | ID=Msa0025670-mRNA-1:exon:14135;Parent=Msa0025670-mRNA-1 |
| chr1_1 | exon | 49034179 | 49034298 | 49034179 | ID=Msa0025670-mRNA-1:exon:14134;Parent=Msa0025670-mRNA-1 |
| chr1_1 | exon | 49034414 | 49034662 | 49034414 | ID=Msa0025670-mRNA-1:exon:14133;Parent=Msa0025670-mRNA-1 |
| chr1_1 | five_prime_UTR | 49034587 | 49034662 | 49034587 | ID=Msa0025670-mRNA-1:five_prime_utr;Parent=Msa0025670-mRNA-1 |
| chr1_1 | CDS | 49034414 | 49034586 | 49034414 | ID=Msa0025670-mRNA-1:cds;Parent=Msa0025670-mRNA-1 |
| chr1_1 | CDS | 49034179 | 49034298 | 49034179 | ID=Msa0025670-mRNA-1:cds;Parent=Msa0025670-mRNA-1 |
| chr1_1 | CDS | 49033082 | 49033236 | 49033082 | ID=Msa0025670-mRNA-1:cds;Parent=Msa0025670-mRNA-1 |
| chr1_1 | CDS | 49032248 | 49032994 | 49032248 | ID=Msa0025670-mRNA-1:cds;Parent=Msa0025670-mRNA-1 |
| chr1_1 | CDS | 49030755 | 49030878 | 49030755 | ID=Msa0025670-mRNA-1:cds;Parent=Msa0025670-mRNA-1 |
| chr1_1 | CDS | 49030585 | 49030645 | 49030585 | ID=Msa0025670-mRNA-1:cds;Parent=Msa0025670-mRNA-1 |
| chr1_1 | CDS | 49030457 | 49030507 | 49030457 | ID=Msa0025670-mRNA-1:cds;Parent=Msa0025670-mRNA-1 |
| chr1_1 | CDS | 49029076 | 49029129 | 49029076 | ID=Msa0025670-mRNA-1:cds;Parent=Msa0025670-mRNA-1 |
| chr1_1 | CDS | 49027669 | 49027788 | 49027669 | ID=Msa0025670-mRNA-1:cds;Parent=Msa0025670-mRNA-1 |
| chr1_1 | CDS | 49027036 | 49027160 | 49027036 | ID=Msa0025670-mRNA-1:cds;Parent=Msa0025670-mRNA-1 |
| chr1_1 | CDS | 49026631 | 49026682 | 49026631 | ID=Msa0025670-mRNA-1:cds;Parent=Msa0025670-mRNA-1 |
| chr1_1 | CDS | 49026368 | 49026466 | 49026368 | ID=Msa0025670-mRNA-1:cds;Parent=Msa0025670-mRNA-1 |
| chr1_1 | three_prime_UTR | 49026325 | 49026367 | 49026325 | ID=Msa0025670-mRNA-1:three_prime_utr;Parent=Msa0025670-mRNA-1 |
| chr1_1 | three_prime_UTR | 49025385 | 49025934 | 49025385 | ID=Msa0025670-mRNA-1:three_prime_utr;Parent=Msa0025670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
