Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166050 | sp|F4KFB3|PTST3_ARATH | 36.585 | 615 | 309 | 17 | 41 | 627 | 35 | 596 | 3.81e-95 | 307 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166050 | A0A072VJE8 | 91.943 | 633 | 35 | 6 | 1 | 628 | 1 | 622 | 0.0 | 1152 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025670 | Msa0166050 | 0.837287 | 5.681944e-57 | -8.615850e-47 |
| Msa0073230 | Msa0166050 | 0.894631 | 2.056002e-75 | -8.615850e-47 |
| Msa0121430 | Msa0166050 | 0.864398 | 1.251704e-64 | -8.615850e-47 |
| Msa0148940 | Msa0166050 | 0.800304 | 1.534640e-48 | -8.615850e-47 |
| Msa0159740 | Msa0166050 | 0.803939 | 2.743669e-49 | -8.615850e-47 |
| Msa0166050 | Msa0357100 | 0.800847 | 1.189292e-48 | -8.615850e-47 |
| Msa0166050 | Msa0510370 | 0.804881 | 1.745812e-49 | -8.615850e-47 |
| Msa0166050 | Msa0748610 | 0.806357 | 8.555759e-50 | -8.615850e-47 |
| Msa0166050 | Msa0769390 | 0.811681 | 6.200121e-51 | -8.615850e-47 |
| Msa0166050 | Msa0782970 | 0.800397 | 1.468854e-48 | -8.615850e-47 |
| Msa0166050 | Msa0789690 | 0.815077 | 1.112307e-51 | -8.615850e-47 |
| Msa0166050 | Msa0831760 | 0.804871 | 1.754297e-49 | -8.615850e-47 |
| Msa0166050 | Msa0847390 | 0.802265 | 6.088957e-49 | -8.615850e-47 |
| Msa0166050 | Msa0968320 | -0.808225 | 3.438481e-50 | -8.615850e-47 |
| Msa0166050 | Msa1170040 | -0.803061 | 4.171774e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166050 | MtrunA17_Chr1g0180511 | 91.943 | 633 | 35 | 6 | 1 | 628 | 1 | 622 | 0.0 | 1152 |
| Msa0166050 | MtrunA17_Chr5g0415861 | 34.615 | 130 | 73 | 2 | 482 | 611 | 389 | 506 | 9.50e-13 | 70.9 |
| Msa0166050 | MtrunA17_Chr3g0110931 | 33.155 | 187 | 85 | 9 | 464 | 627 | 131 | 300 | 3.79e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166050 | AT5G03420.1 | 36.585 | 615 | 309 | 17 | 41 | 627 | 35 | 596 | 3.87e-96 | 307 |
| Msa0166050 | AT1G27070.1 | 31.469 | 143 | 86 | 1 | 482 | 624 | 399 | 529 | 8.52e-14 | 74.7 |
| Msa0166050 | AT5G39790.1 | 31.088 | 193 | 96 | 8 | 459 | 627 | 94 | 273 | 7.60e-12 | 66.6 |
| Msa0166050 | AT5G39790.3 | 33.621 | 116 | 63 | 3 | 517 | 627 | 174 | 280 | 4.88e-11 | 64.3 |
Find 193 sgRNAs with CRISPR-Local
Find 607 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTGAGGATCCATCTTTAT+TGG | 0.210353 | 1_4:-47044762 | None:intergenic |
| GAGGCTGAAGAAAGTCTTTC+AGG | 0.211074 | 1_4:+47044149 | Msa0166050:CDS |
| GGTTGTGGTGGCGGTGGTTT+TGG | 0.255607 | 1_4:-47037715 | None:intergenic |
| TACCCAGGAAATCAAGATTT+TGG | 0.263422 | 1_4:+47045164 | Msa0166050:intron |
| TCCTTGTCAAAATGAGTAAT+TGG | 0.264078 | 1_4:-47040803 | None:intergenic |
| TATAGTAGTAGTGGTGTAAA+TGG | 0.271902 | 1_4:+47037545 | Msa0166050:exon |
| AGAATGCGATGACGCTTTAA+TGG | 0.274132 | 1_4:+47039490 | Msa0166050:CDS |
| CACTTCATTCAACTTGTCTA+TGG | 0.293386 | 1_4:+47039802 | Msa0166050:CDS |
| GGAGAAAACGATTGCTTCAT+TGG | 0.317853 | 1_4:+47046276 | Msa0166050:three_prime_UTR |
| CCACCATCGCTGTATCTATT+AGG | 0.317864 | 1_4:+47046255 | Msa0166050:three_prime_UTR |
| AACAATGCCATGGCACATAA+TGG | 0.319841 | 1_4:+47040589 | Msa0166050:CDS |
| GGTATCAACTGAATTTCTTC+AGG | 0.320026 | 1_4:+47039169 | Msa0166050:CDS |
| TAGATAAAATTTGTTGTTGA+TGG | 0.320425 | 1_4:+47045384 | Msa0166050:intron |
| CAGAGATGTGTGAAGCAGTT+TGG | 0.333304 | 1_4:-47037597 | None:intergenic |
| CCTATCATTCATCCTTGTCC+TGG | 0.345357 | 1_4:+47037476 | None:intergenic |
| TCCATGCCAACAGAAATTTC+TGG | 0.345810 | 1_4:+47039431 | Msa0166050:CDS |
| GAAAGTTGGACCAGCCTCTT+TGG | 0.349591 | 1_4:+47040647 | Msa0166050:CDS |
| ATTGAGGATCCATCTTTATT+GGG | 0.352743 | 1_4:-47044761 | None:intergenic |
| ACCACTGTGGATAATGATTT+AGG | 0.354121 | 1_4:+47039365 | Msa0166050:CDS |
| GAAAGGATTAGTTTATGATT+AGG | 0.356681 | 1_4:+47046144 | Msa0166050:three_prime_UTR |
| TACATAGGAATTGAAGATAA+TGG | 0.357393 | 1_4:+47045921 | Msa0166050:three_prime_UTR |
| CTAGCTACTGACTCCCTTTG+TGG | 0.358855 | 1_4:-47045423 | None:intergenic |
| AACATTGATTCTTTAGAAAC+GGG | 0.360442 | 1_4:+47038963 | Msa0166050:CDS |
| TAGATGATGCATTCTGGTTC+AGG | 0.364201 | 1_4:+47045479 | Msa0166050:exon |
| AGTGAGAGGGAGAGAAATAG+TGG | 0.365796 | 1_4:-47037673 | None:intergenic |
| ATATTAGACTTACCTTCAAC+TGG | 0.371243 | 1_4:-47039866 | None:intergenic |
| AGAGATGTGTGAAGCAGTTT+GGG | 0.371482 | 1_4:-47037596 | None:intergenic |
| AGAGAAAGAGTTCAGTCGTT+TGG | 0.375021 | 1_4:+47039607 | Msa0166050:CDS |
| GCTGATTTCTTCCTCTGCCT+TGG | 0.376594 | 1_4:-47044084 | None:intergenic |
| TTAGGAGAAAATAAACAATT+AGG | 0.377868 | 1_4:+47046162 | Msa0166050:three_prime_UTR |
| TCCAATCAAGTTGTTCCATC+TGG | 0.387208 | 1_4:+47040625 | Msa0166050:CDS |
| GAGACAGTTCCAACTCCTTC+TGG | 0.394600 | 1_4:-47042297 | None:intergenic |
| AGTAGATAGATGATGCATTC+TGG | 0.398258 | 1_4:+47045473 | Msa0166050:exon |
| GAATGCGATGACGCTTTAAT+GGG | 0.407613 | 1_4:+47039491 | Msa0166050:CDS |
| CAACATTGATTCTTTAGAAA+CGG | 0.409475 | 1_4:+47038962 | Msa0166050:CDS |
| ATTTAAATGTGCATACTAGA+TGG | 0.410241 | 1_4:-47046046 | None:intergenic |
| TCCAGATGGAACAACTTGAT+TGG | 0.410526 | 1_4:-47040626 | None:intergenic |
| TTCTCTCTATTGTCAACATC+AGG | 0.412640 | 1_4:-47039590 | None:intergenic |
| AAACTCAGAGCCAGAGGTTG+TGG | 0.414256 | 1_4:-47039720 | None:intergenic |
| TTTCTGTTGGCATGGAACTT+TGG | 0.418429 | 1_4:-47039424 | None:intergenic |
| TACTTTCAGCTCAGCTGAAA+AGG | 0.420378 | 1_4:-47037502 | None:intergenic |
| CGTCAATTTCTCGACGAAGT+TGG | 0.426510 | 1_4:+47037895 | Msa0166050:CDS |
| ACAATGCCATGGCACATAAT+GGG | 0.428974 | 1_4:+47040590 | Msa0166050:CDS |
| GAGGTGGCTGGTAGCTTCAA+TGG | 0.431007 | 1_4:+47044729 | Msa0166050:CDS |
| ATGAAAGAACGACATTTAGA+TGG | 0.440490 | 1_4:+47046009 | Msa0166050:three_prime_UTR |
| TGATTTGTCCATAGAGCAAA+AGG | 0.443744 | 1_4:+47039640 | Msa0166050:CDS |
| GCCATGGCATTGTTATCTTC+AGG | 0.448831 | 1_4:-47040580 | None:intergenic |
| TTACCGTGTGGTTGTGGTGG+CGG | 0.451745 | 1_4:-47037724 | None:intergenic |
| GATATTGAGGTTCTATCAAC+AGG | 0.455374 | 1_4:+47039020 | Msa0166050:CDS |
| AGAACAGATTGAGAAGGAAA+AGG | 0.463574 | 1_4:+47042327 | Msa0166050:CDS |
| TCCGTGGAAGGAACTGTCAA+TGG | 0.466430 | 1_4:-47039539 | None:intergenic |
| AGTTGTTCCATCTGGAAAGT+TGG | 0.466950 | 1_4:+47040633 | Msa0166050:CDS |
| TATGCACTTGTTGTTGGTGT+TGG | 0.468497 | 1_4:-47037628 | None:intergenic |
| AAAATATCCGAGGATTCTAC+AGG | 0.469228 | 1_4:-47039254 | None:intergenic |
| TTTAGAACCTTGATCCATCA+TGG | 0.470651 | 1_4:-47044803 | None:intergenic |
| GAACTTTGGCTATCAAAGTT+CGG | 0.471263 | 1_4:-47039410 | None:intergenic |
| AGAGAATATGCACTTGTTGT+TGG | 0.473316 | 1_4:-47037634 | None:intergenic |
| GTCCATAGAGCAAAAGGACT+GGG | 0.475132 | 1_4:+47039646 | Msa0166050:CDS |
| TCCGTCTGACAATGTTTGCC+AGG | 0.475420 | 1_4:-47038893 | None:intergenic |
| TCTAAACTCGGAGTTGAGTC+AGG | 0.476874 | 1_4:-47039215 | None:intergenic |
| GCGGTGCTGTGGCTTTATCC+TGG | 0.477203 | 1_4:+47045190 | Msa0166050:CDS |
| CTATCATTCATCCTTGTCCT+GGG | 0.478875 | 1_4:+47037477 | None:intergenic |
| ACCAGAAATTTCTGTTGGCA+TGG | 0.480364 | 1_4:-47039432 | None:intergenic |
| CAGGTTCTTGTTGAATTCTG+TGG | 0.486855 | 1_4:+47044690 | Msa0166050:intron |
| CCGTGTGGTTGTGGTGGCGG+TGG | 0.487170 | 1_4:-47037721 | None:intergenic |
| GATGATGTTCCCACAACCTC+TGG | 0.487197 | 1_4:+47039710 | Msa0166050:CDS |
| GTATCAACTGAATTTCTTCA+GGG | 0.491308 | 1_4:+47039170 | Msa0166050:CDS |
| ATAGTAGTAGTGGTGTAAAT+GGG | 0.494585 | 1_4:+47037546 | Msa0166050:exon |
| GCTTTATCCTGGTGTATATG+AGG | 0.496818 | 1_4:+47045201 | Msa0166050:CDS |
| AAATGGGTACCTCCACTCTC+TGG | 0.501751 | 1_4:+47037562 | Msa0166050:exon |
| TGGCTGGTAGCTTCAATGGC+TGG | 0.501850 | 1_4:+47044733 | Msa0166050:CDS |
| GAATGAGAAGGTTGACGGCT+CGG | 0.502596 | 1_4:+47039133 | Msa0166050:CDS |
| AATTTGTTGTTGATGGCGAC+TGG | 0.503081 | 1_4:+47045391 | Msa0166050:CDS |
| TTCAGCTGAGCTGAAAGTAA+AGG | 0.503279 | 1_4:+47037506 | Msa0166050:five_prime_UTR |
| AACTCAGAGCCAGAGGTTGT+GGG | 0.505238 | 1_4:-47039719 | None:intergenic |
| GGTGATGTTGTTGAGGTGGC+TGG | 0.506525 | 1_4:+47044717 | Msa0166050:CDS |
| TTCCGCCCCTGTAGAATCCT+CGG | 0.509559 | 1_4:+47039247 | Msa0166050:CDS |
| CAACTTGTCTATGGAGGAAA+GGG | 0.509652 | 1_4:+47039811 | Msa0166050:CDS |
| TCCACAGTGGTCACTTCAGT+TGG | 0.511638 | 1_4:-47039353 | None:intergenic |
| TAAGATGCAATGTAGTATGA+TGG | 0.511848 | 1_4:+47046387 | Msa0166050:three_prime_UTR |
| CATTGTTATCTTCAGGTGGA+TGG | 0.517779 | 1_4:-47040573 | None:intergenic |
| GATTCACCAGAAATTTCTGT+TGG | 0.518420 | 1_4:-47039437 | None:intergenic |
| TTATACGTGGAGGATGGCCT+AGG | 0.519687 | 1_4:+47039275 | Msa0166050:CDS |
| AAGGTTGACGGCTCGGATGA+TGG | 0.519792 | 1_4:+47039140 | Msa0166050:CDS |
| CATTATACGAAGTGTTGGAA+TGG | 0.520758 | 1_4:-47039565 | None:intergenic |
| CTGGCATCACCCAATAAAGA+TGG | 0.522059 | 1_4:+47044752 | Msa0166050:CDS |
| TGGCCACATTCCCTCTACTA+AGG | 0.523289 | 1_4:+47037927 | Msa0166050:CDS |
| TCCATTGACAGTTCCTTCCA+CGG | 0.525012 | 1_4:+47039538 | Msa0166050:CDS |
| TCATTTGAGACAACACGGTA+TGG | 0.525060 | 1_4:+47039461 | Msa0166050:CDS |
| ACATCTTCCACGTATGTGAA+AGG | 0.533520 | 1_4:+47046127 | Msa0166050:three_prime_UTR |
| TGAACTGTTGTAGGGTACAT+AGG | 0.534895 | 1_4:+47045906 | Msa0166050:intron |
| AGGATCATTATACGAAGTGT+TGG | 0.535407 | 1_4:-47039570 | None:intergenic |
| AGAAGTCAACAACGTGGCAG+AGG | 0.537900 | 1_4:+47039319 | Msa0166050:CDS |
| GACAAGTTGAATGAAGTGTC+GGG | 0.539012 | 1_4:-47039797 | None:intergenic |
| TGACAGCAACATGGAAGAGA+GGG | 0.539210 | 1_4:+47045973 | Msa0166050:three_prime_UTR |
| GACGAAGTTGGTCTTCCTCA+TGG | 0.541010 | 1_4:+47037907 | Msa0166050:CDS |
| AGAAAATAAACAATTAGGCG+TGG | 0.542565 | 1_4:+47046167 | Msa0166050:three_prime_UTR |
| AATAATTGAAAGACCTTCCG+TGG | 0.543122 | 1_4:-47037960 | None:intergenic |
| GGTCAGAATGAGAAGGTTGA+CGG | 0.549557 | 1_4:+47039128 | Msa0166050:intron |
| GGAGATCTAGATCCAGTTGA+AGG | 0.550006 | 1_4:+47039854 | Msa0166050:CDS |
| GCAAAGTAGTATAGTAGTAG+TGG | 0.550251 | 1_4:+47037536 | Msa0166050:five_prime_UTR |
| CTTGTTGAATTCTGTGGCGA+CGG | 0.551688 | 1_4:+47044696 | Msa0166050:CDS |
| CAGTGGTCACTTCAGTTGGA+TGG | 0.552128 | 1_4:-47039349 | None:intergenic |
| GAAGTCAACAACGTGGCAGA+GGG | 0.553220 | 1_4:+47039320 | Msa0166050:CDS |
| CTGGAGAACAGATCCACAAA+GGG | 0.554459 | 1_4:+47045410 | Msa0166050:CDS |
| TCAACTTGTCTATGGAGGAA+AGG | 0.554637 | 1_4:+47039810 | Msa0166050:CDS |
| ATAGTGGATTGGTGTTGCGT+TGG | 0.555387 | 1_4:-47037657 | None:intergenic |
| ATAACACTAGTTAATGATTG+AGG | 0.555605 | 1_4:-47044777 | None:intergenic |
| AAAAGGTGGAAATGAGTGAG+AGG | 0.557135 | 1_4:-47037687 | None:intergenic |
| TAGATACAGCGATGGTGGCG+TGG | 0.558021 | 1_4:-47046250 | None:intergenic |
| GAAAATAAACAATTAGGCGT+GGG | 0.559016 | 1_4:+47046168 | Msa0166050:three_prime_UTR |
| GAGGGAGAGAAATAGTGGAT+TGG | 0.560233 | 1_4:-47037668 | None:intergenic |
| AGACAAGTTGAATGAAGTGT+CGG | 0.561921 | 1_4:-47039798 | None:intergenic |
| AGAAAGTCTTTCAGGACTCA+AGG | 0.562500 | 1_4:+47044157 | Msa0166050:CDS |
| TGACAAGGATTTGGATGCTG+AGG | 0.564953 | 1_4:+47040817 | Msa0166050:CDS |
| TTATAGACCATGATGGATCA+AGG | 0.567399 | 1_4:+47044796 | Msa0166050:CDS |
| GGCTGGTCCAACTTTCCAGA+TGG | 0.570271 | 1_4:-47040640 | None:intergenic |
| CTGAAAAGGAACCCAGGACA+AGG | 0.571580 | 1_4:-47037488 | None:intergenic |
| CACGAAATGAATTTGTATCA+CGG | 0.573343 | 1_4:-47046358 | None:intergenic |
| CCTAATAGATACAGCGATGG+TGG | 0.578730 | 1_4:-47046255 | None:intergenic |
| AGAAGGAGTTGGAACTGTCT+CGG | 0.579202 | 1_4:+47042299 | Msa0166050:CDS |
| GTGCTAGTACCAGAAGGAGT+TGG | 0.582635 | 1_4:+47042288 | Msa0166050:intron |
| TGAGTTCCCATTATGTGCCA+TGG | 0.584922 | 1_4:-47040596 | None:intergenic |
| CTTAAAAGCTCCTTAGTAGA+GGG | 0.586209 | 1_4:-47037937 | None:intergenic |
| AAGGTGTTACCGTGTGGTTG+TGG | 0.587121 | 1_4:-47037730 | None:intergenic |
| TGTCCATAGAGCAAAAGGAC+TGG | 0.587697 | 1_4:+47039645 | Msa0166050:CDS |
| GGATGCTGCAAATGATATTG+AGG | 0.590010 | 1_4:+47039007 | Msa0166050:CDS |
| AAAGGTGGAAATGAGTGAGA+GGG | 0.590308 | 1_4:-47037686 | None:intergenic |
| ACTAGTGTTATAGACCATGA+TGG | 0.591582 | 1_4:+47044789 | Msa0166050:CDS |
| TTCATTCAACTTGTCTATGG+AGG | 0.594794 | 1_4:+47039805 | Msa0166050:CDS |
| CAAACACTTACCAAAGAGGC+TGG | 0.595729 | 1_4:-47040657 | None:intergenic |
| TGTCTTGCAAACCAAGGCAG+AGG | 0.596959 | 1_4:+47044073 | Msa0166050:CDS |
| ATACCAAACACTTACCAAAG+AGG | 0.597173 | 1_4:-47040661 | None:intergenic |
| AACTAATCCTTTCACATACG+TGG | 0.597521 | 1_4:-47046134 | None:intergenic |
| AAATCATCTCAAGTTCATGC+TGG | 0.600300 | 1_4:+47040945 | Msa0166050:CDS |
| ATGGCATTGTTATCTTCAGG+TGG | 0.604132 | 1_4:-47040577 | None:intergenic |
| ATTTAAAGGTCAGAATGAGA+AGG | 0.605549 | 1_4:+47039121 | Msa0166050:intron |
| GCTTAAAAGCTCCTTAGTAG+AGG | 0.607264 | 1_4:-47037938 | None:intergenic |
| TTGACAGCAACATGGAAGAG+AGG | 0.608330 | 1_4:+47045972 | Msa0166050:three_prime_UTR |
| GCTGAAAGAACAGATTGAGA+AGG | 0.608814 | 1_4:+47042321 | Msa0166050:CDS |
| GATTTAGGTAGTTCAAGCGA+AGG | 0.608993 | 1_4:+47039380 | Msa0166050:CDS |
| GTGTTACCGTGTGGTTGTGG+TGG | 0.610122 | 1_4:-47037727 | None:intergenic |
| CCTAGTGGCATATCAACAGC+AGG | 0.611521 | 1_4:-47040547 | None:intergenic |
| CGACGGTGATGTTGTTGAGG+TGG | 0.612943 | 1_4:+47044713 | Msa0166050:CDS |
| ATCAACTGAATTTCTTCAGG+GGG | 0.613079 | 1_4:+47039172 | Msa0166050:CDS |
| CACACAATGAACTTGTGAGA+AGG | 0.619390 | 1_4:-47038938 | None:intergenic |
| TCTATGGACAAATCAACTGA+TGG | 0.619476 | 1_4:-47039632 | None:intergenic |
| GCTCCTTAGTAGAGGGAATG+TGG | 0.619864 | 1_4:-47037930 | None:intergenic |
| ACCTGGCAAACATTGTCAGA+CGG | 0.622952 | 1_4:+47038892 | Msa0166050:CDS |
| AAATATCCGAGGATTCTACA+GGG | 0.625683 | 1_4:-47039253 | None:intergenic |
| GGATGATCACATGCTACATG+AGG | 0.625741 | 1_4:+47040778 | Msa0166050:CDS |
| CTCAGAAAACTCAGAGCCAG+AGG | 0.625929 | 1_4:-47039726 | None:intergenic |
| CCTGCTGTTGATATGCCACT+AGG | 0.626325 | 1_4:+47040547 | Msa0166050:CDS |
| ATCCGAGGATTCTACAGGGG+CGG | 0.627206 | 1_4:-47039249 | None:intergenic |
| CCACCGCCACCACAACCACA+CGG | 0.629623 | 1_4:+47037721 | Msa0166050:CDS |
| GAAATAACATAGCCAGAGAG+TGG | 0.629639 | 1_4:-47037574 | None:intergenic |
| TTAGGCGTGGGCTGATAGTG+AGG | 0.631300 | 1_4:+47046180 | Msa0166050:three_prime_UTR |
| TGGCGACGGTGATGTTGTTG+AGG | 0.633088 | 1_4:+47044710 | Msa0166050:CDS |
| CAAAGGGAGTCAGTAGCTAG+AGG | 0.634990 | 1_4:+47045426 | Msa0166050:CDS |
| GCAAACATTGTCAGACGGAG+AGG | 0.639169 | 1_4:+47038897 | Msa0166050:CDS |
| TCTCCTAATAGATACAGCGA+TGG | 0.640058 | 1_4:-47046258 | None:intergenic |
| AGTGATCTTTGAGTTCACCT+AGG | 0.642551 | 1_4:-47039292 | None:intergenic |
| CTTCTCACAAGTTCATTGTG+TGG | 0.645061 | 1_4:+47038939 | Msa0166050:CDS |
| TTTGTCTGTCTTGCAAACCA+AGG | 0.647837 | 1_4:+47044067 | Msa0166050:CDS |
| TTGTATTTATAGGAATGACC+TGG | 0.649997 | 1_4:+47038875 | Msa0166050:intron |
| AAAATGACTGAGAAGAGGAG+AGG | 0.651561 | 1_4:-47046303 | None:intergenic |
| ACCTGAAGATAACAATGCCA+TGG | 0.653047 | 1_4:+47040579 | Msa0166050:CDS |
| GCTCAGCTGAAAAGGAACCC+AGG | 0.653399 | 1_4:-47037494 | None:intergenic |
| ACGATAAAAGTTAAAACCTG+TGG | 0.655831 | 1_4:-47046227 | None:intergenic |
| TCAGGTGGATGGACACCTAG+TGG | 0.658156 | 1_4:-47040562 | None:intergenic |
| GCACGCACCTCATATACACC+AGG | 0.663325 | 1_4:-47045208 | None:intergenic |
| AAGAAATTCAGTTGATACCG+TGG | 0.664333 | 1_4:-47039165 | None:intergenic |
| GAAGTGCATTCATCTAAACT+CGG | 0.666994 | 1_4:-47039227 | None:intergenic |
| TATTGGGTGCTAGTACCAGA+AGG | 0.670191 | 1_4:+47042282 | Msa0166050:intron |
| ACTGGAGAACAGATCCACAA+AGG | 0.670248 | 1_4:+47045409 | Msa0166050:CDS |
| TCCATAGAGCAAAAGGACTG+GGG | 0.672682 | 1_4:+47039647 | Msa0166050:CDS |
| TATCAACTGAATTTCTTCAG+GGG | 0.673369 | 1_4:+47039171 | Msa0166050:CDS |
| GACAGCAACATGGAAGAGAG+GGG | 0.676424 | 1_4:+47045974 | Msa0166050:three_prime_UTR |
| GTAGAGGGAATGTGGCCATG+AGG | 0.677553 | 1_4:-47037922 | None:intergenic |
| AACTGCTTCACACATCTCTG+TGG | 0.692375 | 1_4:+47037600 | Msa0166050:CDS |
| ACTGCTAGATGTATATAACA+AGG | 0.701193 | 1_4:+47045507 | Msa0166050:three_prime_UTR |
| ATAACATAGCCAGAGAGTGG+AGG | 0.702622 | 1_4:-47037571 | None:intergenic |
| AAGTCTTTCAGGACTCAAGG+AGG | 0.706762 | 1_4:+47044160 | Msa0166050:CDS |
| CTCCACGTATAAAATATCCG+AGG | 0.709234 | 1_4:-47039264 | None:intergenic |
| AATCATCATTTGAGACAACA+CGG | 0.711660 | 1_4:+47039456 | Msa0166050:CDS |
| AAGTCAACAACGTGGCAGAG+GGG | 0.721712 | 1_4:+47039321 | Msa0166050:CDS |
| AAAAGATGCAGAGTTGCATG+AGG | 0.730970 | 1_4:+47044130 | Msa0166050:CDS |
| CGGCTCGGATGATGGTACCA+CGG | 0.731376 | 1_4:+47039148 | Msa0166050:CDS |
| AATATCCGAGGATTCTACAG+GGG | 0.732323 | 1_4:-47039252 | None:intergenic |
| ACCTAAATCATTATCCACAG+TGG | 0.733210 | 1_4:-47039366 | None:intergenic |
| GAAATTGACGAATGTCAGAG+CGG | 0.742026 | 1_4:-47037882 | None:intergenic |
| CTCTAAAGAAGTCAACAACG+TGG | 0.748360 | 1_4:+47039313 | Msa0166050:CDS |
| TCCAACTGAAGTGACCACTG+TGG | 0.757560 | 1_4:+47039352 | Msa0166050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAATTAATTCCTAATT+TGG | + | chr1_4:47037809-47037828 | Msa0166050:intron | 10.0% |
| !! | TTATAAAATTTACAGAAATT+CGG | - | chr1_4:47040068-47040087 | None:intergenic | 10.0% |
| !!! | TTTAAAAAAAAAATCCATTT+TGG | - | chr1_4:47041420-47041439 | None:intergenic | 10.0% |
| !!! | AAAATGGATTTTTTTTTTAA+AGG | + | chr1_4:47041419-47041438 | Msa0166050:intron | 10.0% |
| !!! | GGTATTTTAATATTAAATAT+AGG | - | chr1_4:47041898-47041917 | None:intergenic | 10.0% |
| !! | CAAAAAATATACTAAAATAT+AGG | - | chr1_4:47041870-47041889 | None:intergenic | 10.0% |
| !!! | GGTATTTTAATATTAAATAT+AGG | + | chr1_4:47041898-47041917 | Msa0166050:intron | 10.0% |
| !!! | TTAAATTTTACTGTTTTTAA+TGG | + | chr1_4:47042433-47042452 | Msa0166050:intron | 10.0% |
| !!! | AAAGTGATTTTTTTTTTTTT+TGG | + | chr1_4:47044967-47044986 | Msa0166050:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTGGTTTA+TGG | + | chr1_4:47044974-47044993 | Msa0166050:intron | 10.0% |
| !! | CTTCATTTATAGTTAATTAT+TGG | - | chr1_4:47037781-47037800 | None:intergenic | 15.0% |
| !! | AAATGAAATTAATCCAAATT+AGG | - | chr1_4:47037825-47037844 | None:intergenic | 15.0% |
| !!! | CAATTTTAAAATTTAAACTC+AGG | - | chr1_4:47038075-47038094 | None:intergenic | 15.0% |
| !! | ATTCAGTTATATACAAATAA+TGG | - | chr1_4:47038137-47038156 | None:intergenic | 15.0% |
| !!! | TTATAAGTGTTAGAATATTT+TGG | + | chr1_4:47038177-47038196 | Msa0166050:intron | 15.0% |
| !! | GAACATATTTAACAAAAAAA+AGG | + | chr1_4:47038584-47038603 | Msa0166050:intron | 15.0% |
| !! | TATTTAACCATTGTATTTAT+AGG | + | chr1_4:47038865-47038884 | Msa0166050:intron | 15.0% |
| !! | AAAAAAAAAGGAAAAAAATG+AGG | + | chr1_4:47039975-47039994 | Msa0166050:intron | 15.0% |
| !!! | AATGATTCTTTTAAAATGTT+CGG | - | chr1_4:47040188-47040207 | None:intergenic | 15.0% |
| !! | TGAAATGAAAAAAAAGTTAA+GGG | - | chr1_4:47041072-47041091 | None:intergenic | 15.0% |
| !! | ATGAAATGAAAAAAAAGTTA+AGG | - | chr1_4:47041073-47041092 | None:intergenic | 15.0% |
| !!! | GTTTTTTATGTTTCATATTT+TGG | - | chr1_4:47041331-47041350 | None:intergenic | 15.0% |
| !! | TATGAAACATAAAAAACTTA+AGG | + | chr1_4:47041334-47041353 | Msa0166050:intron | 15.0% |
| !! | ATGAAACATAAAAAACTTAA+GGG | + | chr1_4:47041335-47041354 | Msa0166050:intron | 15.0% |
| !!! | AGTATATTTTTTGTATAGTA+TGG | + | chr1_4:47041877-47041896 | Msa0166050:intron | 15.0% |
| !! | TATAACTATTCTAAACAAAA+AGG | - | chr1_4:47042203-47042222 | None:intergenic | 15.0% |
| !!! | ATTTAGTATTGTTTTTGTTT+TGG | + | chr1_4:47042886-47042905 | Msa0166050:intron | 15.0% |
| !!! | TATTAAAATTTGAAATCAGA+TGG | + | chr1_4:47043129-47043148 | Msa0166050:intron | 15.0% |
| !!! | ATTAAAATTTGAAATCAGAT+GGG | + | chr1_4:47043130-47043149 | Msa0166050:intron | 15.0% |
| !! | TATCTTTACTAAGATTTATT+TGG | - | chr1_4:47043216-47043235 | None:intergenic | 15.0% |
| !!! | ATTTTTTTATCTTTTTGGAT+AGG | - | chr1_4:47044620-47044639 | None:intergenic | 15.0% |
| !!! | TCACTATTTTTTTATCTTTT+TGG | - | chr1_4:47044625-47044644 | None:intergenic | 15.0% |
| !! | TAAATTCAATTAAACATTAG+TGG | - | chr1_4:47045239-47045258 | None:intergenic | 15.0% |
| !! | ATGTTTAATTGAATTTACTT+CGG | + | chr1_4:47045242-47045261 | Msa0166050:intron | 15.0% |
| !! | CAAACATTAATTTAAATTGA+TGG | - | chr1_4:47045563-47045582 | None:intergenic | 15.0% |
| !! | CATCAATTTAAATTAATGTT+TGG | + | chr1_4:47045561-47045580 | Msa0166050:intron | 15.0% |
| !!! | TTTGGATTAATTTCATTTTC+AGG | + | chr1_4:47037827-47037846 | Msa0166050:intron | 20.0% |
| !!! | TAATTTTTGTACCTACTTTT+CGG | + | chr1_4:47038327-47038346 | Msa0166050:intron | 20.0% |
| !!! | AACTTTTCTTCAAGTAAAAA+CGG | - | chr1_4:47038464-47038483 | None:intergenic | 20.0% |
| !!! | TAATTTGTAGAGACTATAAA+AGG | + | chr1_4:47038516-47038535 | Msa0166050:intron | 20.0% |
| !! | AATTTGTAGAGACTATAAAA+GGG | + | chr1_4:47038517-47038536 | Msa0166050:intron | 20.0% |
| !!! | CAAAAAAATGTACATTTTGT+AGG | + | chr1_4:47038555-47038574 | Msa0166050:intron | 20.0% |
| !! | GATTAATGACAAACAATTAT+TGG | - | chr1_4:47038640-47038659 | None:intergenic | 20.0% |
| !! | TTAATATTGTGGAAATGAAA+AGG | - | chr1_4:47038700-47038719 | None:intergenic | 20.0% |
| !!! | TAAATTTCACTTTTCCTTTT+AGG | + | chr1_4:47038733-47038752 | Msa0166050:intron | 20.0% |
| !!! | AAATTTCACTTTTCCTTTTA+GGG | + | chr1_4:47038734-47038753 | Msa0166050:intron | 20.0% |
| !! | AAAAAGTTTAGATGAAAGAT+CGG | + | chr1_4:47038986-47039005 | Msa0166050:CDS | 20.0% |
| !! | CCTTTAAATTGTATTAAAGT+TGG | - | chr1_4:47039110-47039129 | None:intergenic | 20.0% |
| !! | CCAACTTTAATACAATTTAA+AGG | + | chr1_4:47039107-47039126 | Msa0166050:intron | 20.0% |
| !! | TAATAAAGAAAAACAGAACA+CGG | - | chr1_4:47040010-47040029 | None:intergenic | 20.0% |
| !! | TCACAATATCAAACAAATAT+GGG | - | chr1_4:47040042-47040061 | None:intergenic | 20.0% |
| !! | ATCACAATATCAAACAAATA+TGG | - | chr1_4:47040043-47040062 | None:intergenic | 20.0% |
| !!! | GAACATTTTAAAAGAATCAT+TGG | + | chr1_4:47040187-47040206 | Msa0166050:intron | 20.0% |
| !!! | AGTTTTATTATGTTTGAATC+TGG | + | chr1_4:47040714-47040733 | Msa0166050:intron | 20.0% |
| !!! | CTGGATTTGAAATATATATA+GGG | + | chr1_4:47040757-47040776 | Msa0166050:intron | 20.0% |
| !! | ATTTAGATATTACGTATTGT+TGG | + | chr1_4:47040993-47041012 | Msa0166050:intron | 20.0% |
| !! | AAACCTAAAAATAACTTTAG+GGG | - | chr1_4:47041040-47041059 | None:intergenic | 20.0% |
| !! | GAAACCTAAAAATAACTTTA+GGG | - | chr1_4:47041041-47041060 | None:intergenic | 20.0% |
| !! | TGAAACCTAAAAATAACTTT+AGG | - | chr1_4:47041042-47041061 | None:intergenic | 20.0% |
| !!! | ATGTGTTTAATGTTACTTAA+GGG | - | chr1_4:47041102-47041121 | None:intergenic | 20.0% |
| !!! | AATGTGTTTAATGTTACTTA+AGG | - | chr1_4:47041103-47041122 | None:intergenic | 20.0% |
| !! | TTAAGTAACATTAAACACAT+TGG | + | chr1_4:47041102-47041121 | Msa0166050:intron | 20.0% |
| !! | GTCTATAATTAGCAATTTAA+TGG | - | chr1_4:47041193-47041212 | None:intergenic | 20.0% |
| !! | AAATGGAACGTAAAAATTTA+AGG | + | chr1_4:47041362-47041381 | Msa0166050:intron | 20.0% |
| !! | AATGGAACGTAAAAATTTAA+GGG | + | chr1_4:47041363-47041382 | Msa0166050:intron | 20.0% |
| !!! | AATTTTACTGTTTTTAATGG+AGG | + | chr1_4:47042436-47042455 | Msa0166050:intron | 20.0% |
| !!! | ATTTTACTGTTTTTAATGGA+GGG | + | chr1_4:47042437-47042456 | Msa0166050:intron | 20.0% |
| !!! | CCATATCATAAAATATGTTT+TGG | - | chr1_4:47042473-47042492 | None:intergenic | 20.0% |
| !!! | CCAAAACATATTTTATGATA+TGG | + | chr1_4:47042470-47042489 | Msa0166050:intron | 20.0% |
| !! | TATATATACATCAAGCAAAT+GGG | - | chr1_4:47042499-47042518 | None:intergenic | 20.0% |
| !! | ATATATATACATCAAGCAAA+TGG | - | chr1_4:47042500-47042519 | None:intergenic | 20.0% |
| !!! | ATTATTTGATAATATGTCCT+TGG | + | chr1_4:47043343-47043362 | Msa0166050:intron | 20.0% |
| !! | TATATAAGTCAATATGTAGA+GGG | + | chr1_4:47043374-47043393 | Msa0166050:intron | 20.0% |
| !! | AAACTGTAGAAAAACAAAAA+AGG | - | chr1_4:47043710-47043729 | None:intergenic | 20.0% |
| !!! | TTTTTCAGATATTAGTTTTC+TGG | - | chr1_4:47044114-47044133 | None:intergenic | 20.0% |
| !!! | AGTATGCATTTTCATATTAA+TGG | + | chr1_4:47044531-47044550 | Msa0166050:intron | 20.0% |
| !!! | GTATGCATTTTCATATTAAT+GGG | + | chr1_4:47044532-47044551 | Msa0166050:intron | 20.0% |
| !!! | TTTTCATATTAATGGGTTAT+TGG | + | chr1_4:47044539-47044558 | Msa0166050:intron | 20.0% |
| !! | AATCAAATTGAAATTTCAGT+TGG | + | chr1_4:47044869-47044888 | Msa0166050:intron | 20.0% |
| !!! | TTTTTTTTGGTTTATGGTAA+AGG | + | chr1_4:47044980-47044999 | Msa0166050:intron | 20.0% |
| !!! | TCATTTCAATGATTTGTTAT+CGG | + | chr1_4:47045012-47045031 | Msa0166050:intron | 20.0% |
| !!! | TATATGTTGTTCTTTTAAGA+AGG | - | chr1_4:47045083-47045102 | None:intergenic | 20.0% |
| !! | TGTTTAATTGAATTTACTTC+GGG | + | chr1_4:47045243-47045262 | Msa0166050:intron | 20.0% |
| !! | AAAGATTTAATAACAACTTG+TGG | + | chr1_4:47045354-47045373 | Msa0166050:intron | 20.0% |
| !!! | TAGATAAAATTTGTTGTTGA+TGG | + | chr1_4:47045384-47045403 | Msa0166050:intron | 20.0% |
| !! | TTAGGAGAAAATAAACAATT+AGG | + | chr1_4:47046162-47046181 | Msa0166050:three_prime_UTR | 20.0% |
| ! | AGTAAAAAAGAAGAAGAAGA+AGG | - | chr1_4:47037752-47037771 | None:intergenic | 25.0% |
| !! | TGCTTCTAAGAACAATTAAA+CGG | - | chr1_4:47038665-47038684 | None:intergenic | 25.0% |
| ! | ATCATACTTGCTTAATATTG+TGG | - | chr1_4:47038711-47038730 | None:intergenic | 25.0% |
| ! | TTCAGTTCAAAATTTAGCAA+GGG | - | chr1_4:47038764-47038783 | None:intergenic | 25.0% |
| !!! | CAACATTGATTCTTTAGAAA+CGG | + | chr1_4:47038962-47038981 | Msa0166050:CDS | 25.0% |
| !!! | AACATTGATTCTTTAGAAAC+GGG | + | chr1_4:47038963-47038982 | Msa0166050:CDS | 25.0% |
| !! | CAAATTTTCACTTTAATACC+TGG | + | chr1_4:47040146-47040165 | Msa0166050:intron | 25.0% |
| ! | TTTAGTCAAAGTCATTGTAA+TGG | + | chr1_4:47040226-47040245 | Msa0166050:intron | 25.0% |
| !!! | TAAGCAACTTTTCACTTTTT+AGG | + | chr1_4:47040282-47040301 | Msa0166050:intron | 25.0% |
| ! | CATTGAATAAATGATGTATG+TGG | - | chr1_4:47040307-47040326 | None:intergenic | 25.0% |
| ! | GTAAGTGTTTGGTATTATAT+TGG | + | chr1_4:47040669-47040688 | Msa0166050:intron | 25.0% |
| ! | TTTCAAATCCAGGTAAAAAA+GGG | - | chr1_4:47040749-47040768 | None:intergenic | 25.0% |
| ! | ATTTCAAATCCAGGTAAAAA+AGG | - | chr1_4:47040750-47040769 | None:intergenic | 25.0% |
| ! | CCTATATATATTTCAAATCC+AGG | - | chr1_4:47040759-47040778 | None:intergenic | 25.0% |
| !! | CCTGGATTTGAAATATATAT+AGG | + | chr1_4:47040756-47040775 | Msa0166050:intron | 25.0% |
| !! | TTTTACTTATCTCATTATGC+AGG | + | chr1_4:47040894-47040913 | Msa0166050:intron | 25.0% |
| ! | TTTACTTATCTCATTATGCA+GGG | + | chr1_4:47040895-47040914 | Msa0166050:intron | 25.0% |
| !! | TGTGTTTAATGTTACTTAAG+GGG | - | chr1_4:47041101-47041120 | None:intergenic | 25.0% |
| ! | TCTTAACCTTTGTAATGTAA+GGG | - | chr1_4:47041161-47041180 | None:intergenic | 25.0% |
| !! | GTCTCATTTTGTTAACTTAA+GGG | - | chr1_4:47041224-47041243 | None:intergenic | 25.0% |
| !! | TGTCTCATTTTGTTAACTTA+AGG | - | chr1_4:47041225-47041244 | None:intergenic | 25.0% |
| ! | ATTTGTAACTTAAGCCTTAA+GGG | + | chr1_4:47041272-47041291 | Msa0166050:intron | 25.0% |
| ! | AAAAACTTAAGGGATCAAAA+TGG | + | chr1_4:47041345-47041364 | Msa0166050:intron | 25.0% |
| !! | ATTTACAAACGTTGACATTT+TGG | - | chr1_4:47041390-47041409 | None:intergenic | 25.0% |
| ! | ATGTCAACGTTTGTAAATTA+AGG | + | chr1_4:47041392-47041411 | Msa0166050:intron | 25.0% |
| ! | TGTCAACGTTTGTAAATTAA+GGG | + | chr1_4:47041393-47041412 | Msa0166050:intron | 25.0% |
| !!! | GTTATTTTTAAGTTTCACTC+AGG | - | chr1_4:47041446-47041465 | None:intergenic | 25.0% |
| ! | ACTGGGAAATGTTAAAATAT+AGG | + | chr1_4:47041759-47041778 | Msa0166050:intron | 25.0% |
| ! | CTGGGAAATGTTAAAATATA+GGG | + | chr1_4:47041760-47041779 | Msa0166050:intron | 25.0% |
| ! | CTAAAATATAGGGTATAGTA+TGG | - | chr1_4:47041859-47041878 | None:intergenic | 25.0% |
| ! | ACAAGTTAAGAAGCTAAAAA+AGG | - | chr1_4:47042037-47042056 | None:intergenic | 25.0% |
| ! | AAACAGTAAAATTTAACAGC+AGG | - | chr1_4:47042429-47042448 | None:intergenic | 25.0% |
| !!! | TTTTACTGTTTTTAATGGAG+GGG | + | chr1_4:47042438-47042457 | Msa0166050:intron | 25.0% |
| !! | ACTTTGAGTCTTTTATGTTT+AGG | + | chr1_4:47042807-47042826 | Msa0166050:intron | 25.0% |
| !! | TATGTTTAGGATTTGAGAAT+TGG | + | chr1_4:47042820-47042839 | Msa0166050:intron | 25.0% |
| !!! | AGTATTGTTTTTGTTTTGGT+AGG | + | chr1_4:47042890-47042909 | Msa0166050:intron | 25.0% |
| ! | TAATTCTGTAGGATTGAAAT+GGG | - | chr1_4:47042961-47042980 | None:intergenic | 25.0% |
| ! | TTAATTCTGTAGGATTGAAA+TGG | - | chr1_4:47042962-47042981 | None:intergenic | 25.0% |
| ! | TTCTACTCAATTAATTCTGT+AGG | - | chr1_4:47042972-47042991 | None:intergenic | 25.0% |
| ! | ATCTGATAGGAAATTAGATA+TGG | + | chr1_4:47043155-47043174 | Msa0166050:intron | 25.0% |
| ! | TCTGATAGGAAATTAGATAT+GGG | + | chr1_4:47043156-47043175 | Msa0166050:intron | 25.0% |
| ! | ACTTATATAGAATACTACCA+AGG | - | chr1_4:47043363-47043382 | None:intergenic | 25.0% |
| ! | CTATATAAGTCAATATGTAG+AGG | + | chr1_4:47043373-47043392 | Msa0166050:intron | 25.0% |
| !!! | TTATTTGTTAGTACCCTTTT+AGG | + | chr1_4:47043417-47043436 | Msa0166050:intron | 25.0% |
| !!! | TATTTGTTAGTACCCTTTTA+GGG | + | chr1_4:47043418-47043437 | Msa0166050:intron | 25.0% |
| ! | CAATAGAAACTATAGAATAG+TGG | - | chr1_4:47043526-47043545 | None:intergenic | 25.0% |
| !! | ATTGATTTCTTCTGTGTTAT+TGG | + | chr1_4:47043542-47043561 | Msa0166050:intron | 25.0% |
| !!! | GTCAATTTTTTAAGCAGTTT+TGG | + | chr1_4:47044233-47044252 | Msa0166050:intron | 25.0% |
| !!! | TTTTTTAAGCAGTTTTGGAT+AGG | + | chr1_4:47044238-47044257 | Msa0166050:intron | 25.0% |
| !! | GTTTTACAATCATGAGTTTA+GGG | - | chr1_4:47044315-47044334 | None:intergenic | 25.0% |
| !! | TGTTTTACAATCATGAGTTT+AGG | - | chr1_4:47044316-47044335 | None:intergenic | 25.0% |
| !! | TTTTATCTTTTTGGATAGGA+AGG | - | chr1_4:47044616-47044635 | None:intergenic | 25.0% |
| ! | ATAACACTAGTTAATGATTG+AGG | - | chr1_4:47044780-47044799 | None:intergenic | 25.0% |
| !!! | AGACACTTGTCTTTATTTTA+AGG | + | chr1_4:47044841-47044860 | Msa0166050:intron | 25.0% |
| !!! | AAATTTCAGTTGGTAACTAT+TGG | + | chr1_4:47044879-47044898 | Msa0166050:intron | 25.0% |
| ! | ATTAACAAGAACAGAATGAT+GGG | - | chr1_4:47044919-47044938 | None:intergenic | 25.0% |
| ! | AATTAACAAGAACAGAATGA+TGG | - | chr1_4:47044920-47044939 | None:intergenic | 25.0% |
| ! | TTATGTTATGCTCGTTTAAA+AGG | + | chr1_4:47044938-47044957 | Msa0166050:intron | 25.0% |
| ! | TGTTCATTATTATAATACCC+AGG | + | chr1_4:47045149-47045168 | Msa0166050:intron | 25.0% |
| ! | TATATAACAAGGTATGATGA+TGG | + | chr1_4:47045518-47045537 | Msa0166050:intron | 25.0% |
| ! | GAATCATACTAATGATCTTA+AGG | + | chr1_4:47045744-47045763 | Msa0166050:intron | 25.0% |
| !!! | TTGAATTTGTTTCTGAAGTT+TGG | + | chr1_4:47045863-47045882 | Msa0166050:intron | 25.0% |
| !!! | TGAATTTGTTTCTGAAGTTT+GGG | + | chr1_4:47045864-47045883 | Msa0166050:intron | 25.0% |
| ! | CAACAGTTCACAATAATATT+AGG | - | chr1_4:47045896-47045915 | None:intergenic | 25.0% |
| ! | ATATTATTGTGAACTGTTGT+AGG | + | chr1_4:47045897-47045916 | Msa0166050:intron | 25.0% |
| ! | TATTATTGTGAACTGTTGTA+GGG | + | chr1_4:47045898-47045917 | Msa0166050:intron | 25.0% |
| ! | TACATAGGAATTGAAGATAA+TGG | + | chr1_4:47045921-47045940 | Msa0166050:three_prime_UTR | 25.0% |
| ! | ATTTAAATGTGCATACTAGA+TGG | - | chr1_4:47046049-47046068 | None:intergenic | 25.0% |
| !!! | GAAAGGATTAGTTTATGATT+AGG | + | chr1_4:47046144-47046163 | Msa0166050:three_prime_UTR | 25.0% |
| !!! | GTTTAGATAGTTTTAGTAAG+AGG | + | chr1_4:47046204-47046223 | Msa0166050:three_prime_UTR | 25.0% |
| TATAGTAGTAGTGGTGTAAA+TGG | + | chr1_4:47037545-47037564 | Msa0166050:exon | 30.0% | |
| ATAGTAGTAGTGGTGTAAAT+GGG | + | chr1_4:47037546-47037565 | Msa0166050:exon | 30.0% | |
| !!! | AATTTTAAAATTGCGTCTCG+CGG | + | chr1_4:47038082-47038101 | Msa0166050:intron | 30.0% |
| ! | CTAGGCTTTCTTCTTTTAAT+TGG | + | chr1_4:47038385-47038404 | Msa0166050:intron | 30.0% |
| !! | CTTTTAATTGGTAGAGTTTG+AGG | + | chr1_4:47038397-47038416 | Msa0166050:intron | 30.0% |
| TGAAGAAAAGTTCACTCTTT+AGG | + | chr1_4:47038472-47038491 | Msa0166050:intron | 30.0% | |
| GAAGAAAAGTTCACTCTTTA+GGG | + | chr1_4:47038473-47038492 | Msa0166050:intron | 30.0% | |
| TTTAGGGAATAATAGCATGT+AGG | + | chr1_4:47038489-47038508 | Msa0166050:intron | 30.0% | |
| AGAGATGCTTAACTAACTAA+TGG | - | chr1_4:47038612-47038631 | None:intergenic | 30.0% | |
| TCAGTTCAAAATTTAGCAAG+GGG | - | chr1_4:47038763-47038782 | None:intergenic | 30.0% | |
| GTTCAGTTCAAAATTTAGCA+AGG | - | chr1_4:47038765-47038784 | None:intergenic | 30.0% | |
| ! | TTTTACAAATGACCTCTAGT+AGG | + | chr1_4:47038801-47038820 | Msa0166050:intron | 30.0% |
| TTTACAAATGACCTCTAGTA+GGG | + | chr1_4:47038802-47038821 | Msa0166050:intron | 30.0% | |
| GGTCATTCCTATAAATACAA+TGG | - | chr1_4:47038875-47038894 | None:intergenic | 30.0% | |
| TTGTATTTATAGGAATGACC+TGG | + | chr1_4:47038875-47038894 | Msa0166050:intron | 30.0% | |
| !! | TTCTTAACGCACTATTTTTC+TGG | + | chr1_4:47039060-47039079 | Msa0166050:intron | 30.0% |
| ATTTAAAGGTCAGAATGAGA+AGG | + | chr1_4:47039121-47039140 | Msa0166050:intron | 30.0% | |
| GTATCAACTGAATTTCTTCA+GGG | + | chr1_4:47039170-47039189 | Msa0166050:CDS | 30.0% | |
| TATCAACTGAATTTCTTCAG+GGG | + | chr1_4:47039171-47039190 | Msa0166050:CDS | 30.0% | |
| ! | AATCATCATTTGAGACAACA+CGG | + | chr1_4:47039456-47039475 | Msa0166050:CDS | 30.0% |
| ! | GTCGCAAATTTTATTCAGAA+TGG | + | chr1_4:47039833-47039852 | Msa0166050:CDS | 30.0% |
| ATATTAGACTTACCTTCAAC+TGG | - | chr1_4:47039869-47039888 | None:intergenic | 30.0% | |
| !! | TGAAAATTTGAGTTGAAGCA+AGG | - | chr1_4:47040136-47040155 | None:intergenic | 30.0% |
| AATCATTGGCAACAAATTCT+TGG | + | chr1_4:47040201-47040220 | Msa0166050:intron | 30.0% | |
| ATCATTGGCAACAAATTCTT+GGG | + | chr1_4:47040202-47040221 | Msa0166050:intron | 30.0% | |
| TCGATTTAGTATACTTTCTC+CGG | + | chr1_4:47040250-47040269 | Msa0166050:intron | 30.0% | |
| AAGTTGCTTATAATTGAGAC+CGG | - | chr1_4:47040272-47040291 | None:intergenic | 30.0% | |
| TGAACCTAAAAAGTGAAAAG+TGG | + | chr1_4:47040364-47040383 | Msa0166050:intron | 30.0% | |
| !!! | TAAGCCACTTTTCACTTTTT+AGG | - | chr1_4:47040371-47040390 | None:intergenic | 30.0% |
| TTCAAATCCAGGTAAAAAAG+GGG | - | chr1_4:47040748-47040767 | None:intergenic | 30.0% | |
| !! | TCCAATTACTCATTTTGACA+AGG | + | chr1_4:47040802-47040821 | Msa0166050:CDS | 30.0% |
| TCCTTGTCAAAATGAGTAAT+TGG | - | chr1_4:47040806-47040825 | None:intergenic | 30.0% | |
| !! | TACTCATTTTGACAAGGATT+TGG | + | chr1_4:47040808-47040827 | Msa0166050:CDS | 30.0% |
| ! | GTGTTTAATGTTACTTAAGG+GGG | - | chr1_4:47041100-47041119 | None:intergenic | 30.0% |
| GTCTTAACCTTTGTAATGTA+AGG | - | chr1_4:47041162-47041181 | None:intergenic | 30.0% | |
| TTACAAAGGTTAAGACACTT+TGG | + | chr1_4:47041166-47041185 | Msa0166050:intron | 30.0% | |
| ATTGCTAATTATAGACACGT+TGG | + | chr1_4:47041197-47041216 | Msa0166050:intron | 30.0% | |
| CATTTGTAACTTAAGCCTTA+AGG | + | chr1_4:47041271-47041290 | Msa0166050:intron | 30.0% | |
| TGTAAATTAAGGGACCAAAA+TGG | + | chr1_4:47041403-47041422 | Msa0166050:intron | 30.0% | |
| TTAACATTTCCCAGTATGAA+AGG | - | chr1_4:47041754-47041773 | None:intergenic | 30.0% | |
| GCGGACACTAATATATTTAA+GGG | - | chr1_4:47042085-47042104 | None:intergenic | 30.0% | |
| ! | TTCCTTTTGCAAATGCTATT+GGG | + | chr1_4:47042266-47042285 | Msa0166050:intron | 30.0% |
| CTGTCATTAGTCATAATTGA+AGG | - | chr1_4:47042564-47042583 | None:intergenic | 30.0% | |
| ! | TCTTTTCATGTGATTTTGCA+GGG | - | chr1_4:47042650-47042669 | None:intergenic | 30.0% |
| ! | ATCTTTTCATGTGATTTTGC+AGG | - | chr1_4:47042651-47042670 | None:intergenic | 30.0% |
| TAAGATCGAAATCAAGATCA+AGG | - | chr1_4:47042996-47043015 | None:intergenic | 30.0% | |
| TTAAAAATGAATTGCAGGCA+AGG | - | chr1_4:47043075-47043094 | None:intergenic | 30.0% | |
| !! | TTGCCTGCAATTCATTTTTA+AGG | + | chr1_4:47043074-47043093 | Msa0166050:intron | 30.0% |
| TATCTTCTTACTCTCTCTAT+TGG | - | chr1_4:47043189-47043208 | None:intergenic | 30.0% | |
| GGTGAATATTATCAAGTAGA+TGG | - | chr1_4:47043505-47043524 | None:intergenic | 30.0% | |
| GATTGCTTAAAGTTTGTATG+AGG | + | chr1_4:47043646-47043665 | Msa0166050:intron | 30.0% | |
| ! | TTTGTATGAGGTTTGATTTC+TGG | + | chr1_4:47043658-47043677 | Msa0166050:intron | 30.0% |
| ! | TTGATTTCTGGACTTAATGT+TGG | + | chr1_4:47043670-47043689 | Msa0166050:intron | 30.0% |
| ! | TGATTTCTGGACTTAATGTT+GGG | + | chr1_4:47043671-47043690 | Msa0166050:intron | 30.0% |
| CTGTAGAAAAACAAAAAAGG+TGG | - | chr1_4:47043707-47043726 | None:intergenic | 30.0% | |
| ! | TCAGATTTTGGACACATATT+TGG | - | chr1_4:47043757-47043776 | None:intergenic | 30.0% |
| TTTGAGCAATAGATTTGATC+GGG | - | chr1_4:47043926-47043945 | None:intergenic | 30.0% | |
| CTTTGAGCAATAGATTTGAT+CGG | - | chr1_4:47043927-47043946 | None:intergenic | 30.0% | |
| ATGCTGAAAACAAAAACATG+TGG | - | chr1_4:47044045-47044064 | None:intergenic | 30.0% | |
| ATTGACAAATGCTAACCATT+AGG | - | chr1_4:47044219-47044238 | None:intergenic | 30.0% | |
| ! | GAATGTTGGTTATGAAATTG+AGG | + | chr1_4:47044260-47044279 | Msa0166050:intron | 30.0% |
| AATTCTTTCTCTGACAAAAC+TGG | - | chr1_4:47044418-47044437 | None:intergenic | 30.0% | |
| GATCATACATATGCTGTATT+TGG | + | chr1_4:47044569-47044588 | Msa0166050:intron | 30.0% | |
| ATTGAGGATCCATCTTTATT+GGG | - | chr1_4:47044764-47044783 | None:intergenic | 30.0% | |
| ATCAGTATTATTACTAAGCC+AGG | - | chr1_4:47045123-47045142 | None:intergenic | 30.0% | |
| ACTGCTAGATGTATATAACA+AGG | + | chr1_4:47045507-47045526 | Msa0166050:three_prime_UTR | 30.0% | |
| ! | TTTTGCTAAAAGCTACACTT+TGG | - | chr1_4:47045639-47045658 | None:intergenic | 30.0% |
| ACATGCGTTTAAATCAGTTA+GGG | + | chr1_4:47045780-47045799 | Msa0166050:intron | 30.0% | |
| ! | CTGACATTAACTAAAAGTGT+CGG | - | chr1_4:47045810-47045829 | None:intergenic | 30.0% |
| !! | GAATTTGTTTCTGAAGTTTG+GGG | + | chr1_4:47045865-47045884 | Msa0166050:intron | 30.0% |
| ATGAAAGAACGACATTTAGA+TGG | + | chr1_4:47046009-47046028 | Msa0166050:three_prime_UTR | 30.0% | |
| AGAAAATAAACAATTAGGCG+TGG | + | chr1_4:47046167-47046186 | Msa0166050:three_prime_UTR | 30.0% | |
| GAAAATAAACAATTAGGCGT+GGG | + | chr1_4:47046168-47046187 | Msa0166050:three_prime_UTR | 30.0% | |
| ACGATAAAAGTTAAAACCTG+TGG | - | chr1_4:47046230-47046249 | None:intergenic | 30.0% | |
| ! | TTTGTGGTTCATTTTCAAAG+TGG | + | chr1_4:47046325-47046344 | Msa0166050:three_prime_UTR | 30.0% |
| CACGAAATGAATTTGTATCA+CGG | - | chr1_4:47046361-47046380 | None:intergenic | 30.0% | |
| TAAGATGCAATGTAGTATGA+TGG | + | chr1_4:47046387-47046406 | Msa0166050:three_prime_UTR | 30.0% | |
| GCAAAGTAGTATAGTAGTAG+TGG | + | chr1_4:47037536-47037555 | Msa0166050:five_prime_UTR | 35.0% | |
| !! | AGAGAATATGCACTTGTTGT+TGG | - | chr1_4:47037637-47037656 | None:intergenic | 35.0% |
| CTTAAAAGCTCCTTAGTAGA+GGG | - | chr1_4:47037940-47037959 | None:intergenic | 35.0% | |
| AATAATTGAAAGACCTTCCG+TGG | - | chr1_4:47037963-47037982 | None:intergenic | 35.0% | |
| TTACAAATGACCTCTAGTAG+GGG | + | chr1_4:47038803-47038822 | Msa0166050:intron | 35.0% | |
| GAGAGGTCATAAAAAGATTC+AGG | + | chr1_4:47038914-47038933 | Msa0166050:CDS | 35.0% | |
| GATATTGAGGTTCTATCAAC+AGG | + | chr1_4:47039020-47039039 | Msa0166050:CDS | 35.0% | |
| ! | AAGAAATTCAGTTGATACCG+TGG | - | chr1_4:47039168-47039187 | None:intergenic | 35.0% |
| GGTATCAACTGAATTTCTTC+AGG | + | chr1_4:47039169-47039188 | Msa0166050:CDS | 35.0% | |
| ATCAACTGAATTTCTTCAGG+GGG | + | chr1_4:47039172-47039191 | Msa0166050:CDS | 35.0% | |
| GAAGTGCATTCATCTAAACT+CGG | - | chr1_4:47039230-47039249 | None:intergenic | 35.0% | |
| AAATATCCGAGGATTCTACA+GGG | - | chr1_4:47039256-47039275 | None:intergenic | 35.0% | |
| AAAATATCCGAGGATTCTAC+AGG | - | chr1_4:47039257-47039276 | None:intergenic | 35.0% | |
| ! | ATCCTCGGATATTTTATACG+TGG | + | chr1_4:47039262-47039281 | Msa0166050:CDS | 35.0% |
| ! | GATATTTTATACGTGGAGGA+TGG | + | chr1_4:47039269-47039288 | Msa0166050:CDS | 35.0% |
| ACCACTGTGGATAATGATTT+AGG | + | chr1_4:47039365-47039384 | Msa0166050:CDS | 35.0% | |
| ACCTAAATCATTATCCACAG+TGG | - | chr1_4:47039369-47039388 | None:intergenic | 35.0% | |
| GAACTTTGGCTATCAAAGTT+CGG | - | chr1_4:47039413-47039432 | None:intergenic | 35.0% | |
| GATTCACCAGAAATTTCTGT+TGG | - | chr1_4:47039440-47039459 | None:intergenic | 35.0% | |
| TGACGCTTTAATGGGAAAAA+TGG | + | chr1_4:47039499-47039518 | Msa0166050:CDS | 35.0% | |
| GCTTTAATGGGAAAAATGGT+TGG | + | chr1_4:47039503-47039522 | Msa0166050:CDS | 35.0% | |
| !! | CATTATACGAAGTGTTGGAA+TGG | - | chr1_4:47039568-47039587 | None:intergenic | 35.0% |
| AGGATCATTATACGAAGTGT+TGG | - | chr1_4:47039573-47039592 | None:intergenic | 35.0% | |
| TTCTCTCTATTGTCAACATC+AGG | - | chr1_4:47039593-47039612 | None:intergenic | 35.0% | |
| TCTATGGACAAATCAACTGA+TGG | - | chr1_4:47039635-47039654 | None:intergenic | 35.0% | |
| ! | TGATTTGTCCATAGAGCAAA+AGG | + | chr1_4:47039640-47039659 | Msa0166050:CDS | 35.0% |
| ! | AGACAAGTTGAATGAAGTGT+CGG | - | chr1_4:47039801-47039820 | None:intergenic | 35.0% |
| CACTTCATTCAACTTGTCTA+TGG | + | chr1_4:47039802-47039821 | Msa0166050:CDS | 35.0% | |
| TTCATTCAACTTGTCTATGG+AGG | + | chr1_4:47039805-47039824 | Msa0166050:CDS | 35.0% | |
| AAGTGGCTTATAATTGAGAC+CGG | + | chr1_4:47040381-47040400 | Msa0166050:intron | 35.0% | |
| !!! | CATTTTCCATCTGTCACTTT+AGG | + | chr1_4:47040423-47040442 | Msa0166050:intron | 35.0% |
| CATTATCCTAAAGTGACAGA+TGG | - | chr1_4:47040432-47040451 | None:intergenic | 35.0% | |
| TGCAAAAGGAGATGATTCTT+AGG | + | chr1_4:47040498-47040517 | Msa0166050:intron | 35.0% | |
| ATACCAAACACTTACCAAAG+AGG | - | chr1_4:47040664-47040683 | None:intergenic | 35.0% | |
| AAATCATCTCAAGTTCATGC+TGG | + | chr1_4:47040945-47040964 | Msa0166050:CDS | 35.0% | |
| !!! | TGGCCCCTAAAGTTATTTTT+AGG | + | chr1_4:47041034-47041053 | Msa0166050:intron | 35.0% |
| TTTGGTCCCTTACATTACAA+AGG | + | chr1_4:47041152-47041171 | Msa0166050:intron | 35.0% | |
| ! | GACACTTTAGTCTTCTCTTT+CGG | - | chr1_4:47041248-47041267 | None:intergenic | 35.0% |
| CGCGGACACTAATATATTTA+AGG | - | chr1_4:47042086-47042105 | None:intergenic | 35.0% | |
| TTGAATCTCTGTTGTCAAAG+CGG | - | chr1_4:47042180-47042199 | None:intergenic | 35.0% | |
| TAGCATTTGCAAAAGGAAGA+GGG | - | chr1_4:47042264-47042283 | None:intergenic | 35.0% | |
| ATAGCATTTGCAAAAGGAAG+AGG | - | chr1_4:47042265-47042284 | None:intergenic | 35.0% | |
| ! | CTTCCTTTTGCAAATGCTAT+TGG | + | chr1_4:47042265-47042284 | Msa0166050:intron | 35.0% |
| AGAACAGATTGAGAAGGAAA+AGG | + | chr1_4:47042327-47042346 | Msa0166050:CDS | 35.0% | |
| ! | GTTTTTAATGGAGGGGAAAA+TGG | + | chr1_4:47042445-47042464 | Msa0166050:intron | 35.0% |
| CATTTACAAAGTTCTCGTGA+AGG | - | chr1_4:47042534-47042553 | None:intergenic | 35.0% | |
| CTTCACGAGAACTTTGTAAA+TGG | + | chr1_4:47042532-47042551 | Msa0166050:intron | 35.0% | |
| GGTATGACATAAATTTGAGG+AGG | - | chr1_4:47042595-47042614 | None:intergenic | 35.0% | |
| GCAGGTATGACATAAATTTG+AGG | - | chr1_4:47042598-47042617 | None:intergenic | 35.0% | |
| !! | CGATATGATTTTAACGATCC+TGG | + | chr1_4:47042696-47042715 | Msa0166050:intron | 35.0% |
| ! | TTGGTAGGATCTTTTGATCT+TGG | + | chr1_4:47042905-47042924 | Msa0166050:intron | 35.0% |
| ATCTAGCATCAGATCAAAAG+GGG | - | chr1_4:47043038-47043057 | None:intergenic | 35.0% | |
| GATCTAGCATCAGATCAAAA+GGG | - | chr1_4:47043039-47043058 | None:intergenic | 35.0% | |
| CCACCTTAAAAATGAATTGC+AGG | - | chr1_4:47043080-47043099 | None:intergenic | 35.0% | |
| !! | CCTGCAATTCATTTTTAAGG+TGG | + | chr1_4:47043077-47043096 | Msa0166050:intron | 35.0% |
| AATCAGATGGGTAATCTGAT+AGG | + | chr1_4:47043142-47043161 | Msa0166050:intron | 35.0% | |
| ! | ATAATCGCTTGGTCTTCTAA+AGG | + | chr1_4:47043577-47043596 | Msa0166050:intron | 35.0% |
| ! | TTTTGGACACATATTTGGCT+TGG | - | chr1_4:47043752-47043771 | None:intergenic | 35.0% |
| ! | TGCATGATGCTATCAGATTT+TGG | - | chr1_4:47043769-47043788 | None:intergenic | 35.0% |
| CGATCAAATCTATTGCTCAA+AGG | + | chr1_4:47043925-47043944 | Msa0166050:intron | 35.0% | |
| CAAATCTATTGCTCAAAGGA+AGG | + | chr1_4:47043929-47043948 | Msa0166050:intron | 35.0% | |
| TCATACATTACACAGAAGGA+CGG | - | chr1_4:47043997-47044016 | None:intergenic | 35.0% | |
| ACTCTCATACATTACACAGA+AGG | - | chr1_4:47044001-47044020 | None:intergenic | 35.0% | |
| ATGTGGCTAAGCAAATTGTA+TGG | - | chr1_4:47044028-47044047 | None:intergenic | 35.0% | |
| ! | CTTGCATTTTCTTGTCCTAA+TGG | + | chr1_4:47044201-47044220 | Msa0166050:intron | 35.0% |
| CTATCACAATGAGGTTTAGA+GGG | - | chr1_4:47044510-47044529 | None:intergenic | 35.0% | |
| TCTATCACAATGAGGTTTAG+AGG | - | chr1_4:47044511-47044530 | None:intergenic | 35.0% | |
| TGCATACTTCTATCACAATG+AGG | - | chr1_4:47044519-47044538 | None:intergenic | 35.0% | |
| AACAAGAACCTGGAAATACA+AGG | - | chr1_4:47044682-47044701 | None:intergenic | 35.0% | |
| GATTGAGGATCCATCTTTAT+TGG | - | chr1_4:47044765-47044784 | None:intergenic | 35.0% | |
| ACTAGTGTTATAGACCATGA+TGG | + | chr1_4:47044789-47044808 | Msa0166050:CDS | 35.0% | |
| !! | TTATAGACCATGATGGATCA+AGG | + | chr1_4:47044796-47044815 | Msa0166050:CDS | 35.0% |
| ! | TTTAGAACCTTGATCCATCA+TGG | - | chr1_4:47044806-47044825 | None:intergenic | 35.0% |
| TTGTTATCGGAATAAGCCTA+TGG | + | chr1_4:47045025-47045044 | Msa0166050:intron | 35.0% | |
| ! | TACCCAGGAAATCAAGATTT+TGG | + | chr1_4:47045164-47045183 | Msa0166050:intron | 35.0% |
| GACCAAAATCTTGATTTCCT+GGG | - | chr1_4:47045169-47045188 | None:intergenic | 35.0% | |
| AGACCAAAATCTTGATTTCC+TGG | - | chr1_4:47045170-47045189 | None:intergenic | 35.0% | |
| !! | GAAATCAAGATTTTGGTCTG+CGG | + | chr1_4:47045171-47045190 | Msa0166050:CDS | 35.0% |
| GATACAGTTGCAATTCGTTT+AGG | + | chr1_4:47045265-47045284 | Msa0166050:intron | 35.0% | |
| AGTAGATAGATGATGCATTC+TGG | + | chr1_4:47045473-47045492 | Msa0166050:exon | 35.0% | |
| ! | TTGATGGTTATGAAGCAATG+TGG | - | chr1_4:47045547-47045566 | None:intergenic | 35.0% |
| TCAGTTTGACACAAACACTA+TGG | + | chr1_4:47045592-47045611 | Msa0166050:intron | 35.0% | |
| AAACCTGCACTAAATGTTAC+CGG | + | chr1_4:47045702-47045721 | Msa0166050:intron | 35.0% | |
| AAATGTTACCGGGTATATTC+TGG | + | chr1_4:47045713-47045732 | Msa0166050:intron | 35.0% | |
| ! | TGTTACTTCCAGAATATACC+CGG | - | chr1_4:47045724-47045743 | None:intergenic | 35.0% |
| GACATGCGTTTAAATCAGTT+AGG | + | chr1_4:47045779-47045798 | Msa0166050:intron | 35.0% | |
| !! | TGTCAATTTTGACAGCAACA+TGG | + | chr1_4:47045964-47045983 | Msa0166050:three_prime_UTR | 35.0% |
| AACTAATCCTTTCACATACG+TGG | - | chr1_4:47046137-47046156 | None:intergenic | 35.0% | |
| CACAAAAAATGACTGAGAAG+AGG | - | chr1_4:47046311-47046330 | None:intergenic | 35.0% | |
| !!! | CTCTTCTCAGTCATTTTTTG+TGG | + | chr1_4:47046309-47046328 | Msa0166050:three_prime_UTR | 35.0% |
| TACTTTCAGCTCAGCTGAAA+AGG | - | chr1_4:47037505-47037524 | None:intergenic | 40.0% | |
| TTCAGCTGAGCTGAAAGTAA+AGG | + | chr1_4:47037506-47037525 | Msa0166050:five_prime_UTR | 40.0% | |
| GAAATAACATAGCCAGAGAG+TGG | - | chr1_4:47037577-47037596 | None:intergenic | 40.0% | |
| AGAGATGTGTGAAGCAGTTT+GGG | - | chr1_4:47037599-47037618 | None:intergenic | 40.0% | |
| !! | TATGCACTTGTTGTTGGTGT+TGG | - | chr1_4:47037631-47037650 | None:intergenic | 40.0% |
| AAAGGTGGAAATGAGTGAGA+GGG | - | chr1_4:47037689-47037708 | None:intergenic | 40.0% | |
| AAAAGGTGGAAATGAGTGAG+AGG | - | chr1_4:47037690-47037709 | None:intergenic | 40.0% | |
| !!! | TGGTTTTGGAAGCAAAAAGG+TGG | - | chr1_4:47037704-47037723 | None:intergenic | 40.0% |
| !! | TCATTTTCAGGAGAAGTCGA+AGG | + | chr1_4:47037839-47037858 | Msa0166050:intron | 40.0% |
| GAAATTGACGAATGTCAGAG+CGG | - | chr1_4:47037885-47037904 | None:intergenic | 40.0% | |
| GCTTAAAAGCTCCTTAGTAG+AGG | - | chr1_4:47037941-47037960 | None:intergenic | 40.0% | |
| ! | ACTAAGGAGCTTTTAAGCCA+CGG | + | chr1_4:47037943-47037962 | Msa0166050:CDS | 40.0% |
| !!! | GCATGCAATTTTGCCACTTT+AGG | - | chr1_4:47038355-47038374 | None:intergenic | 40.0% |
| AGTGGCAAAATTGCATGCTT+TGG | + | chr1_4:47038357-47038376 | Msa0166050:intron | 40.0% | |
| TACAAATGACCTCTAGTAGG+GGG | + | chr1_4:47038804-47038823 | Msa0166050:intron | 40.0% | |
| CACACAATGAACTTGTGAGA+AGG | - | chr1_4:47038941-47038960 | None:intergenic | 40.0% | |
| CTTCTCACAAGTTCATTGTG+TGG | + | chr1_4:47038939-47038958 | Msa0166050:CDS | 40.0% | |
| GGATGCTGCAAATGATATTG+AGG | + | chr1_4:47039007-47039026 | Msa0166050:CDS | 40.0% | |
| AATATCCGAGGATTCTACAG+GGG | - | chr1_4:47039255-47039274 | None:intergenic | 40.0% | |
| CTCCACGTATAAAATATCCG+AGG | - | chr1_4:47039267-47039286 | None:intergenic | 40.0% | |
| ! | CTCGGATATTTTATACGTGG+AGG | + | chr1_4:47039265-47039284 | Msa0166050:CDS | 40.0% |
| ! | AGTGATCTTTGAGTTCACCT+AGG | - | chr1_4:47039295-47039314 | None:intergenic | 40.0% |
| ! | CTCTAAAGAAGTCAACAACG+TGG | + | chr1_4:47039313-47039332 | Msa0166050:CDS | 40.0% |
| GATTTAGGTAGTTCAAGCGA+AGG | + | chr1_4:47039380-47039399 | Msa0166050:CDS | 40.0% | |
| TTTCTGTTGGCATGGAACTT+TGG | - | chr1_4:47039427-47039446 | None:intergenic | 40.0% | |
| TCCATGCCAACAGAAATTTC+TGG | + | chr1_4:47039431-47039450 | Msa0166050:CDS | 40.0% | |
| ACCAGAAATTTCTGTTGGCA+TGG | - | chr1_4:47039435-47039454 | None:intergenic | 40.0% | |
| ! | TCATTTGAGACAACACGGTA+TGG | + | chr1_4:47039461-47039480 | Msa0166050:CDS | 40.0% |
| AGAATGCGATGACGCTTTAA+TGG | + | chr1_4:47039490-47039509 | Msa0166050:CDS | 40.0% | |
| GAATGCGATGACGCTTTAAT+GGG | + | chr1_4:47039491-47039510 | Msa0166050:CDS | 40.0% | |
| AGAGAAAGAGTTCAGTCGTT+TGG | + | chr1_4:47039607-47039626 | Msa0166050:CDS | 40.0% | |
| ! | GACAAGTTGAATGAAGTGTC+GGG | - | chr1_4:47039800-47039819 | None:intergenic | 40.0% |
| TCAACTTGTCTATGGAGGAA+AGG | + | chr1_4:47039810-47039829 | Msa0166050:CDS | 40.0% | |
| CAACTTGTCTATGGAGGAAA+GGG | + | chr1_4:47039811-47039830 | Msa0166050:CDS | 40.0% | |
| AGGCATTCATCACAACGATA+TGG | - | chr1_4:47039898-47039917 | None:intergenic | 40.0% | |
| ! | TTCAACTGTCAAAGGCATAG+TGG | - | chr1_4:47039922-47039941 | None:intergenic | 40.0% |
| TCACAAGCTTCAACTGTCAA+AGG | - | chr1_4:47039930-47039949 | None:intergenic | 40.0% | |
| CAAACAAATATGGGACTGAC+AGG | - | chr1_4:47040033-47040052 | None:intergenic | 40.0% | |
| TCCATAAAATGCATTCCCTC+CGG | - | chr1_4:47040403-47040422 | None:intergenic | 40.0% | |
| CATGTCTCTCACATTGCAAA+AGG | + | chr1_4:47040484-47040503 | Msa0166050:intron | 40.0% | |
| CATTGTTATCTTCAGGTGGA+TGG | - | chr1_4:47040576-47040595 | None:intergenic | 40.0% | |
| ATGGCATTGTTATCTTCAGG+TGG | - | chr1_4:47040580-47040599 | None:intergenic | 40.0% | |
| ACCTGAAGATAACAATGCCA+TGG | + | chr1_4:47040579-47040598 | Msa0166050:CDS | 40.0% | |
| AACAATGCCATGGCACATAA+TGG | + | chr1_4:47040589-47040608 | Msa0166050:CDS | 40.0% | |
| ACAATGCCATGGCACATAAT+GGG | + | chr1_4:47040590-47040609 | Msa0166050:CDS | 40.0% | |
| ! | TCCAATCAAGTTGTTCCATC+TGG | + | chr1_4:47040625-47040644 | Msa0166050:CDS | 40.0% |
| TCCAGATGGAACAACTTGAT+TGG | - | chr1_4:47040629-47040648 | None:intergenic | 40.0% | |
| AGTTGTTCCATCTGGAAAGT+TGG | + | chr1_4:47040633-47040652 | Msa0166050:CDS | 40.0% | |
| ! | GGCTGACTAAATTACGCTTT+TGG | + | chr1_4:47041014-47041033 | Msa0166050:intron | 40.0% |
| TAAGACACTTTCGTCCCTTA+AGG | - | chr1_4:47041289-47041308 | None:intergenic | 40.0% | |
| CAACCCTCTGTTGTTAATAG+CGG | + | chr1_4:47041488-47041507 | Msa0166050:intron | 40.0% | |
| !! | CTTCTTAACTTGTGCCCTAA+GGG | + | chr1_4:47042044-47042063 | Msa0166050:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTTA+GGG | - | chr1_4:47042061-47042080 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTT+AGG | - | chr1_4:47042062-47042081 | None:intergenic | 40.0% |
| CACCCAATAGCATTTGCAAA+AGG | - | chr1_4:47042271-47042290 | None:intergenic | 40.0% | |
| GCTGAAAGAACAGATTGAGA+AGG | + | chr1_4:47042321-47042340 | Msa0166050:CDS | 40.0% | |
| ! | TATGCGTAAGCTTTGTGACT+AGG | + | chr1_4:47042731-47042750 | Msa0166050:intron | 40.0% |
| GGATCTAGCATCAGATCAAA+AGG | - | chr1_4:47043040-47043059 | None:intergenic | 40.0% | |
| GGAAATTAGATATGGGCCTT+AGG | + | chr1_4:47043163-47043182 | Msa0166050:intron | 40.0% | |
| ! | TTACTCTCTCTATTGGCCTA+AGG | - | chr1_4:47043182-47043201 | None:intergenic | 40.0% |
| CAATATGTAGAGGGAGTTCT+AGG | + | chr1_4:47043383-47043402 | Msa0166050:intron | 40.0% | |
| !!! | TGTTAGTACCCTTTTAGGGT+TGG | + | chr1_4:47043422-47043441 | Msa0166050:intron | 40.0% |
| TCTGCTCTATCATAATCGCT+TGG | + | chr1_4:47043566-47043585 | Msa0166050:intron | 40.0% | |
| ATACATTACACAGAAGGACG+GGG | - | chr1_4:47043995-47044014 | None:intergenic | 40.0% | |
| CATACATTACACAGAAGGAC+GGG | - | chr1_4:47043996-47044015 | None:intergenic | 40.0% | |
| TTTGTCTGTCTTGCAAACCA+AGG | + | chr1_4:47044067-47044086 | Msa0166050:CDS | 40.0% | |
| AAAAGATGCAGAGTTGCATG+AGG | + | chr1_4:47044130-47044149 | Msa0166050:CDS | 40.0% | |
| AGAAAGTCTTTCAGGACTCA+AGG | + | chr1_4:47044157-47044176 | Msa0166050:CDS | 40.0% | |
| CTCAAGGAGGTAATGCATTT+AGG | + | chr1_4:47044173-47044192 | Msa0166050:intron | 40.0% | |
| AAGGAGGTAATGCATTTAGG+AGG | + | chr1_4:47044176-47044195 | Msa0166050:intron | 40.0% | |
| !!! | GCAGTTTTGGATAGGAATGT+TGG | + | chr1_4:47044246-47044265 | Msa0166050:intron | 40.0% |
| ATGAGTTTAGGGACTGTATG+TGG | - | chr1_4:47044304-47044323 | None:intergenic | 40.0% | |
| ! | GACAGCGCTCCTTTAAATTT+TGG | + | chr1_4:47044480-47044499 | Msa0166050:intron | 40.0% |
| !! | GAGGGAGTGCCAAAATTTAA+AGG | - | chr1_4:47044492-47044511 | None:intergenic | 40.0% |
| ACTGTGTTCCTTGTATTTCC+AGG | + | chr1_4:47044671-47044690 | Msa0166050:intron | 40.0% | |
| CACAGAATTCAACAAGAACC+TGG | - | chr1_4:47044692-47044711 | None:intergenic | 40.0% | |
| CAGGTTCTTGTTGAATTCTG+TGG | + | chr1_4:47044690-47044709 | Msa0166050:intron | 40.0% | |
| CTCTCTATCACATATGCCAT+AGG | - | chr1_4:47045044-47045063 | None:intergenic | 40.0% | |
| AAGATTCGCAAGAATTGACC+TGG | + | chr1_4:47045102-47045121 | Msa0166050:intron | 40.0% | |
| GCTTTATCCTGGTGTATATG+AGG | + | chr1_4:47045201-47045220 | Msa0166050:CDS | 40.0% | |
| !! | AATTTGTTGTTGATGGCGAC+TGG | + | chr1_4:47045391-47045410 | Msa0166050:CDS | 40.0% |
| !! | TAGATGATGCATTCTGGTTC+AGG | + | chr1_4:47045479-47045498 | Msa0166050:exon | 40.0% |
| TGGAGAATTTGGCAGAATCA+CGG | - | chr1_4:47045675-47045694 | None:intergenic | 40.0% | |
| GTTTGGATAGGTGGAGAATT+TGG | - | chr1_4:47045686-47045705 | None:intergenic | 40.0% | |
| CATTTAGTGCAGGTTTGGAT+AGG | - | chr1_4:47045698-47045717 | None:intergenic | 40.0% | |
| GGTAACATTTAGTGCAGGTT+TGG | - | chr1_4:47045703-47045722 | None:intergenic | 40.0% | |
| AACCTGCACTAAATGTTACC+GGG | + | chr1_4:47045703-47045722 | Msa0166050:intron | 40.0% | |
| TGAACTGTTGTAGGGTACAT+AGG | + | chr1_4:47045906-47045925 | Msa0166050:intron | 40.0% | |
| ACATCTTCCACGTATGTGAA+AGG | + | chr1_4:47046127-47046146 | Msa0166050:three_prime_UTR | 40.0% | |
| !!! | TAGTTTTAGTAAGAGGCCAC+AGG | + | chr1_4:47046211-47046230 | Msa0166050:three_prime_UTR | 40.0% |
| TCTCCTAATAGATACAGCGA+TGG | - | chr1_4:47046261-47046280 | None:intergenic | 40.0% | |
| GGAGAAAACGATTGCTTCAT+TGG | + | chr1_4:47046276-47046295 | Msa0166050:three_prime_UTR | 40.0% | |
| AAAATGACTGAGAAGAGGAG+AGG | - | chr1_4:47046306-47046325 | None:intergenic | 40.0% | |
| ! | CATTTTCAAAGTGGCTCACA+AGG | + | chr1_4:47046334-47046353 | Msa0166050:three_prime_UTR | 40.0% |
| ATAACATAGCCAGAGAGTGG+AGG | - | chr1_4:47037574-47037593 | None:intergenic | 45.0% | |
| CAGAGATGTGTGAAGCAGTT+TGG | - | chr1_4:47037600-47037619 | None:intergenic | 45.0% | |
| AACTGCTTCACACATCTCTG+TGG | + | chr1_4:47037600-47037619 | Msa0166050:CDS | 45.0% | |
| !! | ATAGTGGATTGGTGTTGCGT+TGG | - | chr1_4:47037660-47037679 | None:intergenic | 45.0% |
| !! | GAGGGAGAGAAATAGTGGAT+TGG | - | chr1_4:47037671-47037690 | None:intergenic | 45.0% |
| AGTGAGAGGGAGAGAAATAG+TGG | - | chr1_4:47037676-47037695 | None:intergenic | 45.0% | |
| !!! | CGGTGGTTTTGGAAGCAAAA+AGG | - | chr1_4:47037707-47037726 | None:intergenic | 45.0% |
| !! | AAGAAGAAGGTGTTACCGTG+TGG | - | chr1_4:47037739-47037758 | None:intergenic | 45.0% |
| CGTCAATTTCTCGACGAAGT+TGG | + | chr1_4:47037895-47037914 | Msa0166050:CDS | 45.0% | |
| !! | CACTTTAGGCACCGAAAAGT+AGG | - | chr1_4:47038341-47038360 | None:intergenic | 45.0% |
| !!! | CTACTTTTCGGTGCCTAAAG+TGG | + | chr1_4:47038339-47038358 | Msa0166050:intron | 45.0% |
| TTGCATGCTTTGGTCACTCT+AGG | + | chr1_4:47038367-47038386 | Msa0166050:intron | 45.0% | |
| ACACATAATCCCCCTACTAG+AGG | - | chr1_4:47038816-47038835 | None:intergenic | 45.0% | |
| ACCTGGCAAACATTGTCAGA+CGG | + | chr1_4:47038892-47038911 | Msa0166050:CDS | 45.0% | |
| GGTCAGAATGAGAAGGTTGA+CGG | + | chr1_4:47039128-47039147 | Msa0166050:intron | 45.0% | |
| TCTAAACTCGGAGTTGAGTC+AGG | - | chr1_4:47039218-47039237 | None:intergenic | 45.0% | |
| TCCATTGACAGTTCCTTCCA+CGG | + | chr1_4:47039538-47039557 | Msa0166050:CDS | 45.0% | |
| ! | TTGGAATGGTTTTCCGTGGA+AGG | - | chr1_4:47039554-47039573 | None:intergenic | 45.0% |
| !! | AGTGTTGGAATGGTTTTCCG+TGG | - | chr1_4:47039558-47039577 | None:intergenic | 45.0% |
| TGTCCATAGAGCAAAAGGAC+TGG | + | chr1_4:47039645-47039664 | Msa0166050:CDS | 45.0% | |
| GTCCATAGAGCAAAAGGACT+GGG | + | chr1_4:47039646-47039665 | Msa0166050:CDS | 45.0% | |
| TCCATAGAGCAAAAGGACTG+GGG | + | chr1_4:47039647-47039666 | Msa0166050:CDS | 45.0% | |
| GGAGATCTAGATCCAGTTGA+AGG | + | chr1_4:47039854-47039873 | Msa0166050:CDS | 45.0% | |
| ! | ACTGTCAAAGGCATAGTGGT+AGG | - | chr1_4:47039918-47039937 | None:intergenic | 45.0% |
| GGAAACTAGACAAGCTAACC+AGG | - | chr1_4:47040167-47040186 | None:intergenic | 45.0% | |
| TGGCTTATAATTGAGACCGG+AGG | + | chr1_4:47040384-47040403 | Msa0166050:intron | 45.0% | |
| GGCTTATAATTGAGACCGGA+GGG | + | chr1_4:47040385-47040404 | Msa0166050:intron | 45.0% | |
| ! | ACCGGAGGGAATGCATTTTA+TGG | + | chr1_4:47040399-47040418 | Msa0166050:intron | 45.0% |
| GCCATGGCATTGTTATCTTC+AGG | - | chr1_4:47040583-47040602 | None:intergenic | 45.0% | |
| TGAGTTCCCATTATGTGCCA+TGG | - | chr1_4:47040599-47040618 | None:intergenic | 45.0% | |
| CAAACACTTACCAAAGAGGC+TGG | - | chr1_4:47040660-47040679 | None:intergenic | 45.0% | |
| CAGCCTCTTTGGTAAGTGTT+TGG | + | chr1_4:47040658-47040677 | Msa0166050:intron | 45.0% | |
| !!! | CTGAGATCCCCTTTTTTACC+TGG | + | chr1_4:47040738-47040757 | Msa0166050:intron | 45.0% |
| GGATGATCACATGCTACATG+AGG | + | chr1_4:47040778-47040797 | Msa0166050:CDS | 45.0% | |
| TGACAAGGATTTGGATGCTG+AGG | + | chr1_4:47040817-47040836 | Msa0166050:CDS | 45.0% | |
| TGGGTTAAAAACGGGTCACA+TGG | - | chr1_4:47041715-47041734 | None:intergenic | 45.0% | |
| ! | GGGTCGTATGGGTTAAAAAC+GGG | - | chr1_4:47041723-47041742 | None:intergenic | 45.0% |
| ! | CGGGTCGTATGGGTTAAAAA+CGG | - | chr1_4:47041724-47041743 | None:intergenic | 45.0% |
| ! | CGTTTTTAACCCATACGACC+CGG | + | chr1_4:47041722-47041741 | Msa0166050:intron | 45.0% |
| ! | CAGTATGAAAGGCACAAACC+GGG | - | chr1_4:47041743-47041762 | None:intergenic | 45.0% |
| ! | CCAGTATGAAAGGCACAAAC+CGG | - | chr1_4:47041744-47041763 | None:intergenic | 45.0% |
| CGGTTTGTGCCTTTCATACT+GGG | + | chr1_4:47041742-47041761 | Msa0166050:intron | 45.0% | |
| !! | GCTTCTTAACTTGTGCCCTA+AGG | + | chr1_4:47042043-47042062 | Msa0166050:intron | 45.0% |
| CTGTTGTCAAAGCGGAAAAG+CGG | - | chr1_4:47042172-47042191 | None:intergenic | 45.0% | |
| TATTGGGTGCTAGTACCAGA+AGG | + | chr1_4:47042282-47042301 | Msa0166050:intron | 45.0% | |
| AGAAGGAGTTGGAACTGTCT+CGG | + | chr1_4:47042299-47042318 | Msa0166050:CDS | 45.0% | |
| GAAGCATAAACAACGCTTGC+AGG | - | chr1_4:47042616-47042635 | None:intergenic | 45.0% | |
| CGCATAAACAACTCAAAGCC+AGG | - | chr1_4:47042717-47042736 | None:intergenic | 45.0% | |
| TCTTGCTGCCAACCCTAAAA+GGG | - | chr1_4:47043433-47043452 | None:intergenic | 45.0% | |
| GAGGCTGAAGAAAGTCTTTC+AGG | + | chr1_4:47044149-47044168 | Msa0166050:CDS | 45.0% | |
| AAGTCTTTCAGGACTCAAGG+AGG | + | chr1_4:47044160-47044179 | Msa0166050:CDS | 45.0% | |
| CACCAGAATCCTGCCTTTAT+GGG | + | chr1_4:47044361-47044380 | Msa0166050:intron | 45.0% | |
| ACCAGAATCCTGCCTTTATG+GGG | + | chr1_4:47044362-47044381 | Msa0166050:intron | 45.0% | |
| CTAAAGACACAGCCCCATAA+AGG | - | chr1_4:47044377-47044396 | None:intergenic | 45.0% | |
| CTTGTTGAATTCTGTGGCGA+CGG | + | chr1_4:47044696-47044715 | Msa0166050:CDS | 45.0% | |
| CTGGCATCACCCAATAAAGA+TGG | + | chr1_4:47044752-47044771 | Msa0166050:CDS | 45.0% | |
| ACTGGAGAACAGATCCACAA+AGG | + | chr1_4:47045409-47045428 | Msa0166050:CDS | 45.0% | |
| CTGGAGAACAGATCCACAAA+GGG | + | chr1_4:47045410-47045429 | Msa0166050:CDS | 45.0% | |
| TTAGTGCAGGTTTGGATAGG+TGG | - | chr1_4:47045695-47045714 | None:intergenic | 45.0% | |
| TACCCGGTAACATTTAGTGC+AGG | - | chr1_4:47045708-47045727 | None:intergenic | 45.0% | |
| TTGACAGCAACATGGAAGAG+AGG | + | chr1_4:47045972-47045991 | Msa0166050:three_prime_UTR | 45.0% | |
| TGACAGCAACATGGAAGAGA+GGG | + | chr1_4:47045973-47045992 | Msa0166050:three_prime_UTR | 45.0% | |
| CCTAATAGATACAGCGATGG+TGG | - | chr1_4:47046258-47046277 | None:intergenic | 45.0% | |
| CCACCATCGCTGTATCTATT+AGG | + | chr1_4:47046255-47046274 | Msa0166050:three_prime_UTR | 45.0% | |
| !! | ATATTAAGTAAAAAAAAAAA+AGG | + | chr1_4:47039963-47039982 | Msa0166050:intron | 5.0% |
| !! | TAAAATGAAAAAAAAAATAT+AGG | - | chr1_4:47041131-47041150 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTCATTTTATTT+TGG | + | chr1_4:47041134-47041153 | Msa0166050:intron | 5.0% |
| !!! | GTATTTTAATATTAAATATA+GGG | - | chr1_4:47041899-47041918 | None:intergenic | 5.0% |
| !! | AAAAAATATACTAAAATATA+GGG | - | chr1_4:47041869-47041888 | None:intergenic | 5.0% |
| CTGAAAAGGAACCCAGGACA+AGG | - | chr1_4:47037491-47037510 | None:intergenic | 50.0% | |
| AAATGGGTACCTCCACTCTC+TGG | + | chr1_4:47037562-47037581 | Msa0166050:exon | 50.0% | |
| ! | AAGGTGTTACCGTGTGGTTG+TGG | - | chr1_4:47037733-47037752 | None:intergenic | 50.0% |
| !! | GACGAAGTTGGTCTTCCTCA+TGG | + | chr1_4:47037907-47037926 | Msa0166050:CDS | 50.0% |
| TGGCCACATTCCCTCTACTA+AGG | + | chr1_4:47037927-47037946 | Msa0166050:CDS | 50.0% | |
| GCTCCTTAGTAGAGGGAATG+TGG | - | chr1_4:47037933-47037952 | None:intergenic | 50.0% | |
| ! | AGGAGCTTTTAAGCCACGGA+AGG | + | chr1_4:47037947-47037966 | Msa0166050:CDS | 50.0% |
| TTGCGTCTCGCGGTAACTAA+AGG | + | chr1_4:47038092-47038111 | Msa0166050:intron | 50.0% | |
| TAGCAAGGGGACTCCCTAAA+AGG | - | chr1_4:47038750-47038769 | None:intergenic | 50.0% | |
| TCCGTCTGACAATGTTTGCC+AGG | - | chr1_4:47038896-47038915 | None:intergenic | 50.0% | |
| GCAAACATTGTCAGACGGAG+AGG | + | chr1_4:47038897-47038916 | Msa0166050:CDS | 50.0% | |
| GAATGAGAAGGTTGACGGCT+CGG | + | chr1_4:47039133-47039152 | Msa0166050:CDS | 50.0% | |
| TTTCTTCAGGGGGACAGTTC+TGG | + | chr1_4:47039182-47039201 | Msa0166050:CDS | 50.0% | |
| TTATACGTGGAGGATGGCCT+AGG | + | chr1_4:47039275-47039294 | Msa0166050:CDS | 50.0% | |
| AGAAGTCAACAACGTGGCAG+AGG | + | chr1_4:47039319-47039338 | Msa0166050:CDS | 50.0% | |
| GAAGTCAACAACGTGGCAGA+GGG | + | chr1_4:47039320-47039339 | Msa0166050:CDS | 50.0% | |
| AAGTCAACAACGTGGCAGAG+GGG | + | chr1_4:47039321-47039340 | Msa0166050:CDS | 50.0% | |
| CAGTGGTCACTTCAGTTGGA+TGG | - | chr1_4:47039352-47039371 | None:intergenic | 50.0% | |
| TCCAACTGAAGTGACCACTG+TGG | + | chr1_4:47039352-47039371 | Msa0166050:CDS | 50.0% | |
| TCCACAGTGGTCACTTCAGT+TGG | - | chr1_4:47039356-47039375 | None:intergenic | 50.0% | |
| TCCGTGGAAGGAACTGTCAA+TGG | - | chr1_4:47039542-47039561 | None:intergenic | 50.0% | |
| ! | ACCCCAGTCCTTTTGCTCTA+TGG | - | chr1_4:47039651-47039670 | None:intergenic | 50.0% |
| GATGATGTTCCCACAACCTC+TGG | + | chr1_4:47039710-47039729 | Msa0166050:CDS | 50.0% | |
| AACTCAGAGCCAGAGGTTGT+GGG | - | chr1_4:47039722-47039741 | None:intergenic | 50.0% | |
| AAACTCAGAGCCAGAGGTTG+TGG | - | chr1_4:47039723-47039742 | None:intergenic | 50.0% | |
| CTCAGAAAACTCAGAGCCAG+AGG | - | chr1_4:47039729-47039748 | None:intergenic | 50.0% | |
| CCTAGTGGCATATCAACAGC+AGG | - | chr1_4:47040550-47040569 | None:intergenic | 50.0% | |
| CCTGCTGTTGATATGCCACT+AGG | + | chr1_4:47040547-47040566 | Msa0166050:CDS | 50.0% | |
| GAAAGTTGGACCAGCCTCTT+TGG | + | chr1_4:47040647-47040666 | Msa0166050:CDS | 50.0% | |
| CGGCCGCTATTAACAACAGA+GGG | - | chr1_4:47041494-47041513 | None:intergenic | 50.0% | |
| !!! | GTAGGCTGTTTTTTGCCGCT+CGG | - | chr1_4:47041519-47041538 | None:intergenic | 50.0% |
| AGGGAAAAGCGGGTCAATAG+CGG | + | chr1_4:47041568-47041587 | Msa0166050:intron | 50.0% | |
| !!! | GGTCAAAGCGCCGCTTTTTT+GGG | + | chr1_4:47041634-47041653 | Msa0166050:intron | 50.0% |
| !!! | AAAGCGCCGCTTTTTTGGGT+CGG | + | chr1_4:47041638-47041657 | Msa0166050:intron | 50.0% |
| TGTGCTCCGACCCAAAAAAG+CGG | - | chr1_4:47041647-47041666 | None:intergenic | 50.0% | |
| TTGGGTCGGAGCACAAAACA+AGG | + | chr1_4:47041652-47041671 | Msa0166050:intron | 50.0% | |
| ACGGGTCACATGGCTGAAAT+GGG | - | chr1_4:47041705-47041724 | None:intergenic | 50.0% | |
| AACGGGTCACATGGCTGAAA+TGG | - | chr1_4:47041706-47041725 | None:intergenic | 50.0% | |
| ! | CCGGTTTGTGCCTTTCATAC+TGG | + | chr1_4:47041741-47041760 | Msa0166050:intron | 50.0% |
| GTGCTAGTACCAGAAGGAGT+TGG | + | chr1_4:47042288-47042307 | Msa0166050:intron | 50.0% | |
| GAGACAGTTCCAACTCCTTC+TGG | - | chr1_4:47042300-47042319 | None:intergenic | 50.0% | |
| CAGGCAAGGTTGTCAGAATC+GGG | - | chr1_4:47043061-47043080 | None:intergenic | 50.0% | |
| GCAGGCAAGGTTGTCAGAAT+CGG | - | chr1_4:47043062-47043081 | None:intergenic | 50.0% | |
| CTCTTGCTGCCAACCCTAAA+AGG | - | chr1_4:47043434-47043453 | None:intergenic | 50.0% | |
| TTTGCTGAGGAGCTTTGCTC+TGG | + | chr1_4:47043456-47043475 | Msa0166050:intron | 50.0% | |
| !! | GGACACATATTTGGCTTGGC+AGG | - | chr1_4:47043748-47043767 | None:intergenic | 50.0% |
| TTACACAGAAGGACGGGGAA+GGG | - | chr1_4:47043990-47044009 | None:intergenic | 50.0% | |
| ATTACACAGAAGGACGGGGA+AGG | - | chr1_4:47043991-47044010 | None:intergenic | 50.0% | |
| TGTCTTGCAAACCAAGGCAG+AGG | + | chr1_4:47044073-47044092 | Msa0166050:CDS | 50.0% | |
| ! | GCTGATTTCTTCCTCTGCCT+TGG | - | chr1_4:47044087-47044106 | None:intergenic | 50.0% |
| CCATAAAGGCAGGATTCTGG+TGG | - | chr1_4:47044363-47044382 | None:intergenic | 50.0% | |
| CCACCAGAATCCTGCCTTTA+TGG | + | chr1_4:47044360-47044379 | Msa0166050:intron | 50.0% | |
| CGCTGTCGCTGCTTCTTATA+CGG | - | chr1_4:47044467-47044486 | None:intergenic | 50.0% | |
| !! | CTAGCTACTGACTCCCTTTG+TGG | - | chr1_4:47045426-47045445 | None:intergenic | 50.0% |
| CAAAGGGAGTCAGTAGCTAG+AGG | + | chr1_4:47045426-47045445 | Msa0166050:CDS | 50.0% | |
| ! | AGAATCACGGTGTGTCACTG+TGG | - | chr1_4:47045662-47045681 | None:intergenic | 50.0% |
| GACAGCAACATGGAAGAGAG+GGG | + | chr1_4:47045974-47045993 | Msa0166050:three_prime_UTR | 50.0% | |
| GCTCAGCTGAAAAGGAACCC+AGG | - | chr1_4:47037497-47037516 | None:intergenic | 55.0% | |
| TTACCGTGTGGTTGTGGTGG+CGG | - | chr1_4:47037727-47037746 | None:intergenic | 55.0% | |
| GTGTTACCGTGTGGTTGTGG+TGG | - | chr1_4:47037730-47037749 | None:intergenic | 55.0% | |
| GTAGAGGGAATGTGGCCATG+AGG | - | chr1_4:47037925-47037944 | None:intergenic | 55.0% | |
| ! | AAGGTTGACGGCTCGGATGA+TGG | + | chr1_4:47039140-47039159 | Msa0166050:CDS | 55.0% |
| TTCCGCCCCTGTAGAATCCT+CGG | + | chr1_4:47039247-47039266 | Msa0166050:CDS | 55.0% | |
| ATCCGAGGATTCTACAGGGG+CGG | - | chr1_4:47039252-47039271 | None:intergenic | 55.0% | |
| TCAGGTGGATGGACACCTAG+TGG | - | chr1_4:47040565-47040584 | None:intergenic | 55.0% | |
| ! | GGCTGGTCCAACTTTCCAGA+TGG | - | chr1_4:47040643-47040662 | None:intergenic | 55.0% |
| GCGGCCGCTATTAACAACAG+AGG | - | chr1_4:47041495-47041514 | None:intergenic | 55.0% | |
| !!! | CTGTTTTTTGCCGCTCGGAG+CGG | - | chr1_4:47041514-47041533 | None:intergenic | 55.0% |
| ! | CTTTTCCCTAACGCGCGACT+CGG | - | chr1_4:47041557-47041576 | None:intergenic | 55.0% |
| AGTCGCGCGTTAGGGAAAAG+CGG | + | chr1_4:47041557-47041576 | Msa0166050:intron | 55.0% | |
| GGGAAAAGCGGGTCAATAGC+GGG | + | chr1_4:47041569-47041588 | Msa0166050:intron | 55.0% | |
| !!! | GGGTCAAAGCGCCGCTTTTT+TGG | + | chr1_4:47041633-47041652 | Msa0166050:intron | 55.0% |
| AGGCACAAACCGGGTCGTAT+GGG | - | chr1_4:47041734-47041753 | None:intergenic | 55.0% | |
| AAGGCACAAACCGGGTCGTA+TGG | - | chr1_4:47041735-47041754 | None:intergenic | 55.0% | |
| ! | TACCGCGCCGCGTCAATTTT+TGG | + | chr1_4:47042136-47042155 | Msa0166050:intron | 55.0% |
| ! | ACCGCGCCGCGTCAATTTTT+GGG | + | chr1_4:47042137-47042156 | Msa0166050:intron | 55.0% |
| GGCCACCCCAAAAATTGACG+CGG | - | chr1_4:47042146-47042165 | None:intergenic | 55.0% | |
| GGCAGCAAGAGACTTTGCTG+AGG | + | chr1_4:47043443-47043462 | Msa0166050:intron | 55.0% | |
| GCCCCATAAAGGCAGGATTC+TGG | - | chr1_4:47044366-47044385 | None:intergenic | 55.0% | |
| AGACACAGCCCCATAAAGGC+AGG | - | chr1_4:47044373-47044392 | None:intergenic | 55.0% | |
| TGGCGACGGTGATGTTGTTG+AGG | + | chr1_4:47044710-47044729 | Msa0166050:CDS | 55.0% | |
| CGACGGTGATGTTGTTGAGG+TGG | + | chr1_4:47044713-47044732 | Msa0166050:CDS | 55.0% | |
| GGTGATGTTGTTGAGGTGGC+TGG | + | chr1_4:47044717-47044736 | Msa0166050:CDS | 55.0% | |
| GAGGTGGCTGGTAGCTTCAA+TGG | + | chr1_4:47044729-47044748 | Msa0166050:CDS | 55.0% | |
| TGGCTGGTAGCTTCAATGGC+TGG | + | chr1_4:47044733-47044752 | Msa0166050:CDS | 55.0% | |
| !! | GATTTTGGTCTGCGGTGCTG+TGG | + | chr1_4:47045179-47045198 | Msa0166050:CDS | 55.0% |
| GCACGCACCTCATATACACC+AGG | - | chr1_4:47045211-47045230 | None:intergenic | 55.0% | |
| ! | TTAGGCGTGGGCTGATAGTG+AGG | + | chr1_4:47046180-47046199 | Msa0166050:three_prime_UTR | 55.0% |
| ! | TAGATACAGCGATGGTGGCG+TGG | - | chr1_4:47046253-47046272 | None:intergenic | 55.0% |
| !!! | GGTTGTGGTGGCGGTGGTTT+TGG | - | chr1_4:47037718-47037737 | None:intergenic | 60.0% |
| ! | CGGCTCGGATGATGGTACCA+CGG | + | chr1_4:47039148-47039167 | Msa0166050:CDS | 60.0% |
| TTAATAGCGGCCGCTCCGAG+CGG | + | chr1_4:47041501-47041520 | Msa0166050:intron | 60.0% | |
| GTCGCGCGTTAGGGAAAAGC+GGG | + | chr1_4:47041558-47041577 | Msa0166050:intron | 60.0% | |
| !! | CGGGTCAATAGCGGGTTTCG+CGG | + | chr1_4:47041577-47041596 | Msa0166050:intron | 60.0% |
| ! | GCGGGCGCTATTTCATGACG+CGG | - | chr1_4:47042104-47042123 | None:intergenic | 60.0% |
| AATTGACGCGGCGCGGTATG+CGG | - | chr1_4:47042134-47042153 | None:intergenic | 60.0% | |
| CCCCAAAAATTGACGCGGCG+CGG | - | chr1_4:47042141-47042160 | None:intergenic | 60.0% | |
| ! | CCGCGCCGCGTCAATTTTTG+GGG | + | chr1_4:47042138-47042157 | Msa0166050:intron | 60.0% |
| !! | CGCCGCGTCAATTTTTGGGG+TGG | + | chr1_4:47042141-47042160 | Msa0166050:intron | 60.0% |
| GTCAAAGCGGAAAAGCGGCG+CGG | - | chr1_4:47042167-47042186 | None:intergenic | 60.0% | |
| !! | GCGGTGCTGTGGCTTTATCC+TGG | + | chr1_4:47045190-47045209 | Msa0166050:CDS | 60.0% |
| CCACCGCCACCACAACCACA+CGG | + | chr1_4:47037721-47037740 | Msa0166050:CDS | 65.0% | |
| ! | GACTCGGTAGCGCTCTGACG+CGG | - | chr1_4:47041541-47041560 | None:intergenic | 65.0% |
| CGCTACCGAGTCGCGCGTTA+GGG | + | chr1_4:47041549-47041568 | Msa0166050:intron | 65.0% | |
| GCGGCGCTTTGACCCGCTAT+TGG | - | chr1_4:47041628-47041647 | None:intergenic | 65.0% | |
| ATTGACGCGGCGCGGTATGC+GGG | - | chr1_4:47042133-47042152 | None:intergenic | 65.0% | |
| !! | CCGTGTGGTTGTGGTGGCGG+TGG | - | chr1_4:47037724-47037743 | None:intergenic | 70.0% |
| CGGTAGCGCTCTGACGCGGT+AGG | - | chr1_4:47041537-47041556 | None:intergenic | 70.0% | |
| GCGCTACCGAGTCGCGCGTT+AGG | + | chr1_4:47041548-47041567 | Msa0166050:intron | 70.0% | |
| CGGGTTTCGCGGCCGCTATC+CGG | + | chr1_4:47041588-47041607 | Msa0166050:intron | 70.0% | |
| GTTTCGCGGCCGCTATCCGG+TGG | + | chr1_4:47041591-47041610 | Msa0166050:intron | 70.0% | |
| ATTGGTCCGCCCCGCTCCAC+CGG | - | chr1_4:47041610-47041629 | None:intergenic | 70.0% | |
| GGAGCGGGGCGGACCAATAG+CGG | + | chr1_4:47041612-47041631 | Msa0166050:intron | 70.0% | |
| GAGCGGGGCGGACCAATAGC+GGG | + | chr1_4:47041613-47041632 | Msa0166050:intron | 70.0% | |
| GCGGCCGCTATCCGGTGGAG+CGG | + | chr1_4:47041596-47041615 | Msa0166050:intron | 75.0% | |
| CGGCCGCTATCCGGTGGAGC+GGG | + | chr1_4:47041597-47041616 | Msa0166050:intron | 75.0% | |
| GGCCGCTATCCGGTGGAGCG+GGG | + | chr1_4:47041598-47041617 | Msa0166050:intron | 75.0% | |
| CGCCCCGCTCCACCGGATAG+CGG | - | chr1_4:47041603-47041622 | None:intergenic | 75.0% | |
| CGCTATCCGGTGGAGCGGGG+CGG | + | chr1_4:47041601-47041620 | Msa0166050:intron | 75.0% | |
| GCGGTATGCGGGCGCGTAGC+GGG | - | chr1_4:47042122-47042141 | None:intergenic | 75.0% | |
| CGCGGTATGCGGGCGCGTAG+CGG | - | chr1_4:47042123-47042142 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 47037488 | 47046468 | 47037488 | ID=Msa0166050;Name=Msa0166050 |
| chr1_4 | mRNA | 47037488 | 47046468 | 47037488 | ID=Msa0166050-mRNA-1;Parent=Msa0166050;Name=Msa0166050-mRNA-1;_AED=0.19;_eAED=0.19;_QI=76|0.91|0.92|1|0.91|0.92|13|593|628 |
| chr1_4 | exon | 47037488 | 47037742 | 47037488 | ID=Msa0166050-mRNA-1:exon:13568;Parent=Msa0166050-mRNA-1 |
| chr1_4 | exon | 47037849 | 47037968 | 47037849 | ID=Msa0166050-mRNA-1:exon:13569;Parent=Msa0166050-mRNA-1 |
| chr1_4 | exon | 47038887 | 47039041 | 47038887 | ID=Msa0166050-mRNA-1:exon:13570;Parent=Msa0166050-mRNA-1 |
| chr1_4 | exon | 47039129 | 47039875 | 47039129 | ID=Msa0166050-mRNA-1:exon:13571;Parent=Msa0166050-mRNA-1 |
| chr1_4 | exon | 47040545 | 47040668 | 47040545 | ID=Msa0166050-mRNA-1:exon:13572;Parent=Msa0166050-mRNA-1 |
| chr1_4 | exon | 47040778 | 47040838 | 47040778 | ID=Msa0166050-mRNA-1:exon:13573;Parent=Msa0166050-mRNA-1 |
| chr1_4 | exon | 47040916 | 47040966 | 47040916 | ID=Msa0166050-mRNA-1:exon:13574;Parent=Msa0166050-mRNA-1 |
| chr1_4 | exon | 47042295 | 47042348 | 47042295 | ID=Msa0166050-mRNA-1:exon:13575;Parent=Msa0166050-mRNA-1 |
| chr1_4 | exon | 47044062 | 47044181 | 47044062 | ID=Msa0166050-mRNA-1:exon:13576;Parent=Msa0166050-mRNA-1 |
| chr1_4 | exon | 47044693 | 47044817 | 47044693 | ID=Msa0166050-mRNA-1:exon:13577;Parent=Msa0166050-mRNA-1 |
| chr1_4 | exon | 47045171 | 47045222 | 47045171 | ID=Msa0166050-mRNA-1:exon:13578;Parent=Msa0166050-mRNA-1 |
| chr1_4 | exon | 47045387 | 47045528 | 47045387 | ID=Msa0166050-mRNA-1:exon:13579;Parent=Msa0166050-mRNA-1 |
| chr1_4 | exon | 47045919 | 47046468 | 47045919 | ID=Msa0166050-mRNA-1:exon:13580;Parent=Msa0166050-mRNA-1 |
| chr1_4 | five_prime_UTR | 47037488 | 47037563 | 47037488 | ID=Msa0166050-mRNA-1:five_prime_utr;Parent=Msa0166050-mRNA-1 |
| chr1_4 | CDS | 47037564 | 47037742 | 47037564 | ID=Msa0166050-mRNA-1:cds;Parent=Msa0166050-mRNA-1 |
| chr1_4 | CDS | 47037849 | 47037968 | 47037849 | ID=Msa0166050-mRNA-1:cds;Parent=Msa0166050-mRNA-1 |
| chr1_4 | CDS | 47038887 | 47039041 | 47038887 | ID=Msa0166050-mRNA-1:cds;Parent=Msa0166050-mRNA-1 |
| chr1_4 | CDS | 47039129 | 47039875 | 47039129 | ID=Msa0166050-mRNA-1:cds;Parent=Msa0166050-mRNA-1 |
| chr1_4 | CDS | 47040545 | 47040668 | 47040545 | ID=Msa0166050-mRNA-1:cds;Parent=Msa0166050-mRNA-1 |
| chr1_4 | CDS | 47040778 | 47040838 | 47040778 | ID=Msa0166050-mRNA-1:cds;Parent=Msa0166050-mRNA-1 |
| chr1_4 | CDS | 47040916 | 47040966 | 47040916 | ID=Msa0166050-mRNA-1:cds;Parent=Msa0166050-mRNA-1 |
| chr1_4 | CDS | 47042295 | 47042348 | 47042295 | ID=Msa0166050-mRNA-1:cds;Parent=Msa0166050-mRNA-1 |
| chr1_4 | CDS | 47044062 | 47044181 | 47044062 | ID=Msa0166050-mRNA-1:cds;Parent=Msa0166050-mRNA-1 |
| chr1_4 | CDS | 47044693 | 47044817 | 47044693 | ID=Msa0166050-mRNA-1:cds;Parent=Msa0166050-mRNA-1 |
| chr1_4 | CDS | 47045171 | 47045222 | 47045171 | ID=Msa0166050-mRNA-1:cds;Parent=Msa0166050-mRNA-1 |
| chr1_4 | CDS | 47045387 | 47045485 | 47045387 | ID=Msa0166050-mRNA-1:cds;Parent=Msa0166050-mRNA-1 |
| chr1_4 | three_prime_UTR | 47045486 | 47045528 | 47045486 | ID=Msa0166050-mRNA-1:three_prime_utr;Parent=Msa0166050-mRNA-1 |
| chr1_4 | three_prime_UTR | 47045919 | 47046468 | 47045919 | ID=Msa0166050-mRNA-1:three_prime_utr;Parent=Msa0166050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
