AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0026210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0026210 MtrunA17_Chr1g0181621 100.000 142 0 0 1 142 1 142 5.68e-102 288
Msa0026210 MtrunA17_Chr7g0263691 93.662 142 9 0 1 142 1 142 1.56e-94 269
Msa0026210 MtrunA17_Chr7g0239631 53.623 69 29 2 42 109 15 81 5.82e-16 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0026210 AT5G02960.1 95.070 142 7 0 1 142 1 142 8.13e-95 270
Msa0026210 AT3G09680.1 92.958 142 10 0 1 142 1 142 1.41e-91 262

Find 64 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAGATAATTTGCAAATTA+TGG 0.181530 1_1:-49947793 None:intergenic
CTGGTTGTCTTACTCTTATT+TGG 0.212826 1_1:+49947752 Msa0026210:three_prime_UTR
CAGGTTTCATTTCGTAGATT+AGG 0.233470 1_1:+49945917 None:intergenic
ACCATAATTTGCAAATTATC+TGG 0.276012 1_1:+49947792 Msa0026210:three_prime_UTR
AGGTTTCATTTCGTAGATTA+GGG 0.327108 1_1:+49945918 Msa0026210:five_prime_UTR
ACATTTACGAATAGCTGAAT+TGG 0.330998 1_1:-49947192 None:intergenic
GTTAACACATATACTCTGTT+TGG 0.357410 1_1:+49947910 Msa0026210:three_prime_UTR
AGTAAGACAACCAGAGGATA+GGG 0.385428 1_1:-49947743 None:intergenic
ATTCCACAAATCTAAGATCT+TGG 0.393379 1_1:-49947564 None:intergenic
TTCAAGGTTGTGAAGGTCTC+CGG 0.405046 1_1:+49947501 Msa0026210:CDS
TGTGTTGAGCTCGGAGGTTA+TGG 0.405375 1_1:-49945982 None:intergenic
CATGCTGTGGGAGATATTCC+TGG 0.414411 1_1:+49947471 Msa0026210:CDS
GATAATTTGCAAATTATGGT+TGG 0.452323 1_1:-49947789 None:intergenic
TCAAGGTTGTGAAGGTCTCC+GGG 0.459657 1_1:+49947502 Msa0026210:CDS
CATTTACGAATAGCTGAATT+GGG 0.461085 1_1:-49947191 None:intergenic
CAGCTATTCGTAAATGTGCC+AGG 0.469764 1_1:+49947198 Msa0026210:CDS
TCATACAAGAAGTCTCATCT+TGG 0.473075 1_1:+49946994 Msa0026210:CDS
GTGAATCTTCCCCTATCCTC+TGG 0.473157 1_1:+49947733 Msa0026210:three_prime_UTR
GAGTAAGACAACCAGAGGAT+AGG 0.482177 1_1:-49947744 None:intergenic
AGAGTTACCCCATGGCTGCT+TGG 0.484731 1_1:-49946011 None:intergenic
TGCTGGTTCTTCCCACGCAA+AGG 0.487634 1_1:+49947038 Msa0026210:CDS
TGGTCCTTGTGTGTTGAGCT+CGG 0.488561 1_1:-49945991 None:intergenic
CTCACCGCAGGAGGCAAAGG+TGG 0.491520 1_1:+49946962 Msa0026210:CDS
GCTGGTTCTTCCCACGCAAA+GGG 0.497054 1_1:+49947039 Msa0026210:CDS
ATTGCTGGATTTGGAAGAAA+GGG 0.499669 1_1:+49947447 Msa0026210:CDS
GCGTGGGAAGAACCAGCAAA+AGG 0.504542 1_1:-49947033 None:intergenic
CATACAAGAAGTCTCATCTT+GGG 0.508352 1_1:+49946995 Msa0026210:CDS
GATTGCTGGATTTGGAAGAA+AGG 0.508603 1_1:+49947446 Msa0026210:CDS
TAGTTTAAACAACCATCGTT+AGG 0.508606 1_1:-49947263 None:intergenic
TATTCCTGGAGTTAGATTCA+AGG 0.508883 1_1:+49947485 Msa0026210:CDS
AGGGTACAACTAATCAAGAA+TGG 0.513747 1_1:+49947218 Msa0026210:CDS
TATAGGAAGACACATGGAAT+GGG 0.517444 1_1:+49946919 Msa0026210:intron
AAGCCAAGATCTTAGATTTG+TGG 0.520253 1_1:+49947561 Msa0026210:exon
CAGCCCACCTTTGCCTCCTG+CGG 0.522174 1_1:-49946966 None:intergenic
ACACAAGGACCAAGCAGCCA+TGG 0.530103 1_1:+49946002 Msa0026210:exon
CGAGGACAATTCCCTTTGCG+TGG 0.534957 1_1:-49947050 None:intergenic
CACAAGGACCAAGCAGCCAT+GGG 0.544659 1_1:+49946003 Msa0026210:exon
GCAAGCTGAAGTCTCACCGC+AGG 0.557712 1_1:+49946950 Msa0026210:CDS
AGTCTCACCGCAGGAGGCAA+AGG 0.562641 1_1:+49946959 Msa0026210:CDS
AGCTGAAGTCTCACCGCAGG+AGG 0.569090 1_1:+49946953 Msa0026210:CDS
AGTCTCATCTTGGGAATGAG+TGG 0.571456 1_1:+49947004 Msa0026210:CDS
ATTCTTGATTAGTTGTACCC+TGG 0.574592 1_1:-49947216 None:intergenic
CTATAGGAAGACACATGGAA+TGG 0.575092 1_1:+49946918 Msa0026210:intron
GTTGAGCTCGGAGGTTATGG+AGG 0.583331 1_1:-49945979 None:intergenic
TGGAAGAAAGGGTCATGCTG+TGG 0.584767 1_1:+49947458 Msa0026210:CDS
GGAAGAAAGGGTCATGCTGT+GGG 0.588458 1_1:+49947459 Msa0026210:CDS
GCTGCCTTTGTTCCTAACGA+TGG 0.589634 1_1:+49947251 Msa0026210:CDS
AGTTAGATTCAAGGTTGTGA+AGG 0.593952 1_1:+49947494 Msa0026210:CDS
ACAACCATCGTTAGGAACAA+AGG 0.594668 1_1:-49947255 None:intergenic
AAGAGCAAGAAGAGACACCC+CGG 0.599254 1_1:-49947520 None:intergenic
TCACCGCAGGAGGCAAAGGT+GGG 0.600190 1_1:+49946963 Msa0026210:CDS
ACAACCTTGAATCTAACTCC+AGG 0.602701 1_1:-49947489 None:intergenic
ATAGGGGAAGATTCACAAGT+AGG 0.610228 1_1:-49947726 None:intergenic
ACCTCCGAGCTCAACACACA+AGG 0.619600 1_1:+49945987 Msa0026210:five_prime_UTR
GTAAGACAACCAGAGGATAG+GGG 0.623999 1_1:-49947742 None:intergenic
GAGGACAATTCCCTTTGCGT+GGG 0.632164 1_1:-49947049 None:intergenic
AGCTATTCGTAAATGTGCCA+GGG 0.637371 1_1:+49947199 Msa0026210:CDS
CTTGTCTATAGGAAGACACA+TGG 0.644023 1_1:+49946913 Msa0026210:intron
TTGAGCTCGGAGGTTATGGA+GGG 0.646209 1_1:-49945978 None:intergenic
AATAAGAGTAAGACAACCAG+AGG 0.653108 1_1:-49947749 None:intergenic
TTGTTAAACAGAAAATTCAG+TGG 0.670551 1_1:-49947815 None:intergenic
CAAGGTTGTGAAGGTCTCCG+GGG 0.724409 1_1:+49947503 Msa0026210:CDS
TCCTTGTGTGTTGAGCTCGG+AGG 0.735284 1_1:-49945988 None:intergenic
ACAAGGACCAAGCAGCCATG+GGG 0.747559 1_1:+49946004 Msa0026210:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTATTTAGGTTTTATTT+TGG + chr1_1:49946154-49946173 Msa0026210:intron 15.0%
!!! GTATCTATTTTTTGTTATTA+AGG + chr1_1:49946354-49946373 Msa0026210:intron 15.0%
!!! AATTTGAAACTTGAATATTT+AGG + chr1_1:49946385-49946404 Msa0026210:intron 15.0%
!!! TATGTCATTTCATATTTATA+AGG - chr1_1:49946520-49946539 None:intergenic 15.0%
!!! AATGAAATTTTAAAAGTTAC+AGG + chr1_1:49947940-49947959 Msa0026210:three_prime_UTR 15.0%
!!! TTGTTATTTAGGTTTTATTT+TGG + chr1_1:49946154-49946173 Msa0026210:intron 15.0%
!!! GTATCTATTTTTTGTTATTA+AGG + chr1_1:49946354-49946373 Msa0026210:intron 15.0%
!!! AATTTGAAACTTGAATATTT+AGG + chr1_1:49946385-49946404 Msa0026210:intron 15.0%
!!! TATGTCATTTCATATTTATA+AGG - chr1_1:49946520-49946539 None:intergenic 15.0%
!!! TTATTTAGGTTTTATTTTGG+TGG + chr1_1:49946157-49946176 Msa0026210:intron 20.0%
!!! CTTTTGTTTTGTTTAGTTTA+TGG + chr1_1:49946230-49946249 Msa0026210:intron 20.0%
!! TTGAATATTTAGGCTTAATT+TGG + chr1_1:49946395-49946414 Msa0026210:intron 20.0%
!! TATCTAAAAATGCTATAAGT+TGG + chr1_1:49946607-49946626 Msa0026210:intron 20.0%
!!! CTTTTTGTTATAAATGACTT+AGG + chr1_1:49946780-49946799 Msa0026210:intron 20.0%
!! GCAAAAATCAACATAATTTA+GGG - chr1_1:49947612-49947631 None:intergenic 20.0%
!! AGCAAAAATCAACATAATTT+AGG - chr1_1:49947613-49947632 None:intergenic 20.0%
!!! TTTTGTATCTTGTTATTTTG+TGG + chr1_1:49947659-49947678 Msa0026210:three_prime_UTR 20.0%
!!! TTATTTAGGTTTTATTTTGG+TGG + chr1_1:49946157-49946176 Msa0026210:intron 20.0%
!!! CTTTTGTTTTGTTTAGTTTA+TGG + chr1_1:49946230-49946249 Msa0026210:intron 20.0%
!! TTGAATATTTAGGCTTAATT+TGG + chr1_1:49946395-49946414 Msa0026210:intron 20.0%
!! TATCTAAAAATGCTATAAGT+TGG + chr1_1:49946607-49946626 Msa0026210:intron 20.0%
!!! CTTTTTGTTATAAATGACTT+AGG + chr1_1:49946780-49946799 Msa0026210:intron 20.0%
!! GCAAAAATCAACATAATTTA+GGG - chr1_1:49947612-49947631 None:intergenic 20.0%
!! AGCAAAAATCAACATAATTT+AGG - chr1_1:49947613-49947632 None:intergenic 20.0%
!!! TTTTGTATCTTGTTATTTTG+TGG + chr1_1:49947659-49947678 Msa0026210:three_prime_UTR 20.0%
!!! TCCTTATGAATATCGATTTT+GGG - chr1_1:49946105-49946124 None:intergenic 25.0%
!!! ATCCTTATGAATATCGATTT+TGG - chr1_1:49946106-49946125 None:intergenic 25.0%
! TAGCATGTTTATATTCGATT+TGG - chr1_1:49946190-49946209 None:intergenic 25.0%
! CTGATTAAATTTGTAGTGTT+TGG + chr1_1:49946474-49946493 Msa0026210:intron 25.0%
! TGTTCATAATTCACAACTAA+GGG - chr1_1:49946745-49946764 None:intergenic 25.0%
! ATGTTCATAATTCACAACTA+AGG - chr1_1:49946746-49946765 None:intergenic 25.0%
!!! TCTTTTGTTGTTACATAAGA+TGG - chr1_1:49946860-49946879 None:intergenic 25.0%
!!! GATTGTTGTTTTATTTACAG+TGG + chr1_1:49947152-49947171 Msa0026210:intron 25.0%
!!! TTTTATTTACAGTGGTATTG+AGG + chr1_1:49947160-49947179 Msa0026210:intron 25.0%
!! ATTTTTGCTTCATATTGAGT+GGG + chr1_1:49947624-49947643 Msa0026210:three_prime_UTR 25.0%
!! CATTTTTCATTCTTACTCTT+AGG + chr1_1:49947687-49947706 Msa0026210:three_prime_UTR 25.0%
!! GATAATTTGCAAATTATGGT+TGG - chr1_1:49947792-49947811 None:intergenic 25.0%
!! ACCATAATTTGCAAATTATC+TGG + chr1_1:49947792-49947811 Msa0026210:three_prime_UTR 25.0%
! TTGTTAAACAGAAAATTCAG+TGG - chr1_1:49947818-49947837 None:intergenic 25.0%
!!! TCCTTATGAATATCGATTTT+GGG - chr1_1:49946105-49946124 None:intergenic 25.0%
!!! ATCCTTATGAATATCGATTT+TGG - chr1_1:49946106-49946125 None:intergenic 25.0%
! TAGCATGTTTATATTCGATT+TGG - chr1_1:49946190-49946209 None:intergenic 25.0%
! CTGATTAAATTTGTAGTGTT+TGG + chr1_1:49946474-49946493 Msa0026210:intron 25.0%
! TGTTCATAATTCACAACTAA+GGG - chr1_1:49946745-49946764 None:intergenic 25.0%
! ATGTTCATAATTCACAACTA+AGG - chr1_1:49946746-49946765 None:intergenic 25.0%
!!! TCTTTTGTTGTTACATAAGA+TGG - chr1_1:49946860-49946879 None:intergenic 25.0%
!!! GATTGTTGTTTTATTTACAG+TGG + chr1_1:49947152-49947171 Msa0026210:intron 25.0%
!!! TTTTATTTACAGTGGTATTG+AGG + chr1_1:49947160-49947179 Msa0026210:intron 25.0%
!! ATTTTTGCTTCATATTGAGT+GGG + chr1_1:49947624-49947643 Msa0026210:three_prime_UTR 25.0%
!! CATTTTTCATTCTTACTCTT+AGG + chr1_1:49947687-49947706 Msa0026210:three_prime_UTR 25.0%
!! GATAATTTGCAAATTATGGT+TGG - chr1_1:49947792-49947811 None:intergenic 25.0%
!! ACCATAATTTGCAAATTATC+TGG + chr1_1:49947792-49947811 Msa0026210:three_prime_UTR 25.0%
! TTGTTAAACAGAAAATTCAG+TGG - chr1_1:49947818-49947837 None:intergenic 25.0%
AGGTTTCATTTCGTAGATTA+GGG + chr1_1:49945918-49945937 Msa0026210:five_prime_UTR 30.0%
TGCAATAGAATATGCAGAAA+TGG - chr1_1:49946056-49946075 None:intergenic 30.0%
!!! ATGAATATCGATTTTGGGAA+TGG - chr1_1:49946100-49946119 None:intergenic 30.0%
TCCCAAAATCGATATTCATA+AGG + chr1_1:49946101-49946120 Msa0026210:intron 30.0%
TAGTTTATGACTTATCGTAC+TGG + chr1_1:49946326-49946345 Msa0026210:intron 30.0%
TGTAAGCTTGTGAAAAATGA+CGG + chr1_1:49946647-49946666 Msa0026210:intron 30.0%
AAAAAATGTGTCTTGCCAAA+CGG + chr1_1:49946718-49946737 Msa0026210:intron 30.0%
GTCTTCAACACTTTGATATT+AGG + chr1_1:49946802-49946821 Msa0026210:intron 30.0%
TTCAACACTTTGATATTAGG+TGG + chr1_1:49946805-49946824 Msa0026210:intron 30.0%
TCAACACTTTGATATTAGGT+GGG + chr1_1:49946806-49946825 Msa0026210:intron 30.0%
! AAATCTTCTGACTTGTCTAT+AGG + chr1_1:49946902-49946921 Msa0026210:intron 30.0%
CATTTACGAATAGCTGAATT+GGG - chr1_1:49947194-49947213 None:intergenic 30.0%
ACATTTACGAATAGCTGAAT+TGG - chr1_1:49947195-49947214 None:intergenic 30.0%
TAGTTTAAACAACCATCGTT+AGG - chr1_1:49947266-49947285 None:intergenic 30.0%
! TCCTTGCTTGTATTTTCTAT+TGG + chr1_1:49947304-49947323 Msa0026210:intron 30.0%
ACCAATAGAAAATACAAGCA+AGG - chr1_1:49947308-49947327 None:intergenic 30.0%
TGACTTTAAACTGTTATGTC+TGG + chr1_1:49947336-49947355 Msa0026210:intron 30.0%
! ATTCCACAAATCTAAGATCT+TGG - chr1_1:49947567-49947586 None:intergenic 30.0%
! GATTTTTGCTTCATATTGAG+TGG + chr1_1:49947623-49947642 Msa0026210:three_prime_UTR 30.0%
! GCCAGATAATTTGCAAATTA+TGG - chr1_1:49947796-49947815 None:intergenic 30.0%
GTTAACACATATACTCTGTT+TGG + chr1_1:49947910-49947929 Msa0026210:three_prime_UTR 30.0%
AGGTTTCATTTCGTAGATTA+GGG + chr1_1:49945918-49945937 Msa0026210:five_prime_UTR 30.0%
TGCAATAGAATATGCAGAAA+TGG - chr1_1:49946056-49946075 None:intergenic 30.0%
!!! ATGAATATCGATTTTGGGAA+TGG - chr1_1:49946100-49946119 None:intergenic 30.0%
TCCCAAAATCGATATTCATA+AGG + chr1_1:49946101-49946120 Msa0026210:intron 30.0%
TAGTTTATGACTTATCGTAC+TGG + chr1_1:49946326-49946345 Msa0026210:intron 30.0%
TGTAAGCTTGTGAAAAATGA+CGG + chr1_1:49946647-49946666 Msa0026210:intron 30.0%
AAAAAATGTGTCTTGCCAAA+CGG + chr1_1:49946718-49946737 Msa0026210:intron 30.0%
GTCTTCAACACTTTGATATT+AGG + chr1_1:49946802-49946821 Msa0026210:intron 30.0%
TTCAACACTTTGATATTAGG+TGG + chr1_1:49946805-49946824 Msa0026210:intron 30.0%
TCAACACTTTGATATTAGGT+GGG + chr1_1:49946806-49946825 Msa0026210:intron 30.0%
! AAATCTTCTGACTTGTCTAT+AGG + chr1_1:49946902-49946921 Msa0026210:intron 30.0%
CATTTACGAATAGCTGAATT+GGG - chr1_1:49947194-49947213 None:intergenic 30.0%
ACATTTACGAATAGCTGAAT+TGG - chr1_1:49947195-49947214 None:intergenic 30.0%
TAGTTTAAACAACCATCGTT+AGG - chr1_1:49947266-49947285 None:intergenic 30.0%
! TCCTTGCTTGTATTTTCTAT+TGG + chr1_1:49947304-49947323 Msa0026210:intron 30.0%
ACCAATAGAAAATACAAGCA+AGG - chr1_1:49947308-49947327 None:intergenic 30.0%
TGACTTTAAACTGTTATGTC+TGG + chr1_1:49947336-49947355 Msa0026210:intron 30.0%
! ATTCCACAAATCTAAGATCT+TGG - chr1_1:49947567-49947586 None:intergenic 30.0%
! GATTTTTGCTTCATATTGAG+TGG + chr1_1:49947623-49947642 Msa0026210:three_prime_UTR 30.0%
! GCCAGATAATTTGCAAATTA+TGG - chr1_1:49947796-49947815 None:intergenic 30.0%
GTTAACACATATACTCTGTT+TGG + chr1_1:49947910-49947929 Msa0026210:three_prime_UTR 30.0%
! TAGATTAGGGTTTTCGTCTT+CGG + chr1_1:49945931-49945950 Msa0026210:five_prime_UTR 35.0%
ATATGCAGAAATGGCAATGA+AGG - chr1_1:49946047-49946066 None:intergenic 35.0%
!! GATTTTGGGAATGGTTAACA+GGG - chr1_1:49946091-49946110 None:intergenic 35.0%
TAACAAAGAGCTGATAAGCT+AGG + chr1_1:49946425-49946444 Msa0026210:intron 35.0%
TGTGAAAAATGACGGTTACA+AGG + chr1_1:49946655-49946674 Msa0026210:intron 35.0%
TTTGATATTAGGTGGGAATC+AGG + chr1_1:49946813-49946832 Msa0026210:intron 35.0%
TATAGGAAGACACATGGAAT+GGG + chr1_1:49946919-49946938 Msa0026210:intron 35.0%
TCATACAAGAAGTCTCATCT+TGG + chr1_1:49946994-49947013 Msa0026210:CDS 35.0%
CATACAAGAAGTCTCATCTT+GGG + chr1_1:49946995-49947014 Msa0026210:CDS 35.0%
! ATTCTTGATTAGTTGTACCC+TGG - chr1_1:49947219-49947238 None:intergenic 35.0%
AGGGTACAACTAATCAAGAA+TGG + chr1_1:49947218-49947237 Msa0026210:CDS 35.0%
!!! GAAGTTTTGATTGCTGGATT+TGG + chr1_1:49947438-49947457 Msa0026210:CDS 35.0%
ATTGCTGGATTTGGAAGAAA+GGG + chr1_1:49947447-49947466 Msa0026210:CDS 35.0%
TATTCCTGGAGTTAGATTCA+AGG + chr1_1:49947485-49947504 Msa0026210:CDS 35.0%
AGTTAGATTCAAGGTTGTGA+AGG + chr1_1:49947494-49947513 Msa0026210:CDS 35.0%
AAGCCAAGATCTTAGATTTG+TGG + chr1_1:49947561-49947580 Msa0026210:exon 35.0%
AATAAGAGTAAGACAACCAG+AGG - chr1_1:49947752-49947771 None:intergenic 35.0%
CTGGTTGTCTTACTCTTATT+TGG + chr1_1:49947752-49947771 Msa0026210:three_prime_UTR 35.0%
!!! CATTGACTTGTTTTGTTGAC+TGG + chr1_1:49947888-49947907 Msa0026210:three_prime_UTR 35.0%
! TAGATTAGGGTTTTCGTCTT+CGG + chr1_1:49945931-49945950 Msa0026210:five_prime_UTR 35.0%
ATATGCAGAAATGGCAATGA+AGG - chr1_1:49946047-49946066 None:intergenic 35.0%
!! GATTTTGGGAATGGTTAACA+GGG - chr1_1:49946091-49946110 None:intergenic 35.0%
TAACAAAGAGCTGATAAGCT+AGG + chr1_1:49946425-49946444 Msa0026210:intron 35.0%
TGTGAAAAATGACGGTTACA+AGG + chr1_1:49946655-49946674 Msa0026210:intron 35.0%
TTTGATATTAGGTGGGAATC+AGG + chr1_1:49946813-49946832 Msa0026210:intron 35.0%
TATAGGAAGACACATGGAAT+GGG + chr1_1:49946919-49946938 Msa0026210:intron 35.0%
TCATACAAGAAGTCTCATCT+TGG + chr1_1:49946994-49947013 Msa0026210:CDS 35.0%
CATACAAGAAGTCTCATCTT+GGG + chr1_1:49946995-49947014 Msa0026210:CDS 35.0%
! ATTCTTGATTAGTTGTACCC+TGG - chr1_1:49947219-49947238 None:intergenic 35.0%
AGGGTACAACTAATCAAGAA+TGG + chr1_1:49947218-49947237 Msa0026210:CDS 35.0%
!!! GAAGTTTTGATTGCTGGATT+TGG + chr1_1:49947438-49947457 Msa0026210:CDS 35.0%
ATTGCTGGATTTGGAAGAAA+GGG + chr1_1:49947447-49947466 Msa0026210:CDS 35.0%
TATTCCTGGAGTTAGATTCA+AGG + chr1_1:49947485-49947504 Msa0026210:CDS 35.0%
AGTTAGATTCAAGGTTGTGA+AGG + chr1_1:49947494-49947513 Msa0026210:CDS 35.0%
AAGCCAAGATCTTAGATTTG+TGG + chr1_1:49947561-49947580 Msa0026210:exon 35.0%
AATAAGAGTAAGACAACCAG+AGG - chr1_1:49947752-49947771 None:intergenic 35.0%
CTGGTTGTCTTACTCTTATT+TGG + chr1_1:49947752-49947771 Msa0026210:three_prime_UTR 35.0%
!!! CATTGACTTGTTTTGTTGAC+TGG + chr1_1:49947888-49947907 Msa0026210:three_prime_UTR 35.0%
!! CGATTTTGGGAATGGTTAAC+AGG - chr1_1:49946092-49946111 None:intergenic 40.0%
CCAGCACATTACATACAGAT+AGG - chr1_1:49946264-49946283 None:intergenic 40.0%
CCTATCTGTATGTAATGTGC+TGG + chr1_1:49946261-49946280 Msa0026210:intron 40.0%
!! TGTGCTGGCTAAGATTCATA+TGG + chr1_1:49946276-49946295 Msa0026210:intron 40.0%
AGCTGATAAGCTAGGCTATA+GGG + chr1_1:49946433-49946452 Msa0026210:intron 40.0%
AAAAATGACGGTTACAAGGC+TGG + chr1_1:49946659-49946678 Msa0026210:intron 40.0%
CTTGTCTATAGGAAGACACA+TGG + chr1_1:49946913-49946932 Msa0026210:intron 40.0%
CTATAGGAAGACACATGGAA+TGG + chr1_1:49946918-49946937 Msa0026210:intron 40.0%
TCCTCGAAAAGATGTAAGAG+TGG + chr1_1:49947067-49947086 Msa0026210:intron 40.0%
! ACCACTCTTACATCTTTTCG+AGG - chr1_1:49947071-49947090 None:intergenic 40.0%
GATGTAAGAGTGGTTAAGCT+TGG + chr1_1:49947077-49947096 Msa0026210:intron 40.0%
AGCTATTCGTAAATGTGCCA+GGG + chr1_1:49947199-49947218 Msa0026210:CDS 40.0%
ACAACCATCGTTAGGAACAA+AGG - chr1_1:49947258-49947277 None:intergenic 40.0%
TATCCATCTTGTGTGACTGA+TGG + chr1_1:49947406-49947425 Msa0026210:intron 40.0%
!!! CAGGATGAAGTTTTGATTGC+TGG + chr1_1:49947432-49947451 Msa0026210:intron 40.0%
GATTGCTGGATTTGGAAGAA+AGG + chr1_1:49947446-49947465 Msa0026210:CDS 40.0%
ACAACCTTGAATCTAACTCC+AGG - chr1_1:49947492-49947511 None:intergenic 40.0%
! GTCTCTTCTTGCTCTTTTCA+AGG + chr1_1:49947527-49947546 Msa0026210:CDS 40.0%
!! TGCTCTTTTCAAGGAGAAGA+AGG + chr1_1:49947536-49947555 Msa0026210:CDS 40.0%
ATAGGGGAAGATTCACAAGT+AGG - chr1_1:49947729-49947748 None:intergenic 40.0%
AGTAAGACAACCAGAGGATA+GGG - chr1_1:49947746-49947765 None:intergenic 40.0%
!! CGATTTTGGGAATGGTTAAC+AGG - chr1_1:49946092-49946111 None:intergenic 40.0%
CCAGCACATTACATACAGAT+AGG - chr1_1:49946264-49946283 None:intergenic 40.0%
CCTATCTGTATGTAATGTGC+TGG + chr1_1:49946261-49946280 Msa0026210:intron 40.0%
!! TGTGCTGGCTAAGATTCATA+TGG + chr1_1:49946276-49946295 Msa0026210:intron 40.0%
AGCTGATAAGCTAGGCTATA+GGG + chr1_1:49946433-49946452 Msa0026210:intron 40.0%
AAAAATGACGGTTACAAGGC+TGG + chr1_1:49946659-49946678 Msa0026210:intron 40.0%
CTTGTCTATAGGAAGACACA+TGG + chr1_1:49946913-49946932 Msa0026210:intron 40.0%
CTATAGGAAGACACATGGAA+TGG + chr1_1:49946918-49946937 Msa0026210:intron 40.0%
TCCTCGAAAAGATGTAAGAG+TGG + chr1_1:49947067-49947086 Msa0026210:intron 40.0%
! ACCACTCTTACATCTTTTCG+AGG - chr1_1:49947071-49947090 None:intergenic 40.0%
GATGTAAGAGTGGTTAAGCT+TGG + chr1_1:49947077-49947096 Msa0026210:intron 40.0%
AGCTATTCGTAAATGTGCCA+GGG + chr1_1:49947199-49947218 Msa0026210:CDS 40.0%
ACAACCATCGTTAGGAACAA+AGG - chr1_1:49947258-49947277 None:intergenic 40.0%
TATCCATCTTGTGTGACTGA+TGG + chr1_1:49947406-49947425 Msa0026210:intron 40.0%
!!! CAGGATGAAGTTTTGATTGC+TGG + chr1_1:49947432-49947451 Msa0026210:intron 40.0%
GATTGCTGGATTTGGAAGAA+AGG + chr1_1:49947446-49947465 Msa0026210:CDS 40.0%
ACAACCTTGAATCTAACTCC+AGG - chr1_1:49947492-49947511 None:intergenic 40.0%
! GTCTCTTCTTGCTCTTTTCA+AGG + chr1_1:49947527-49947546 Msa0026210:CDS 40.0%
!! TGCTCTTTTCAAGGAGAAGA+AGG + chr1_1:49947536-49947555 Msa0026210:CDS 40.0%
ATAGGGGAAGATTCACAAGT+AGG - chr1_1:49947729-49947748 None:intergenic 40.0%
AGTAAGACAACCAGAGGATA+GGG - chr1_1:49947746-49947765 None:intergenic 40.0%
! GGTTAGTTAGAGTTACCCCA+TGG - chr1_1:49946022-49946041 None:intergenic 45.0%
GCAGAAATGGCAATGAAGGA+GGG - chr1_1:49946043-49946062 None:intergenic 45.0%
TGCAGAAATGGCAATGAAGG+AGG - chr1_1:49946044-49946063 None:intergenic 45.0%
GAGCTGATAAGCTAGGCTAT+AGG + chr1_1:49946432-49946451 Msa0026210:intron 45.0%
GCTGATAAGCTAGGCTATAG+GGG + chr1_1:49946434-49946453 Msa0026210:intron 45.0%
TTCACAACTAAGGGTCCGTT+TGG - chr1_1:49946736-49946755 None:intergenic 45.0%
AGTCTCATCTTGGGAATGAG+TGG + chr1_1:49947004-49947023 Msa0026210:CDS 45.0%
! GAGTGGAAGAAACCTTTTGC+TGG + chr1_1:49947021-49947040 Msa0026210:CDS 45.0%
CAGCTATTCGTAAATGTGCC+AGG + chr1_1:49947198-49947217 Msa0026210:CDS 45.0%
CAACCATCAGTCACACAAGA+TGG - chr1_1:49947412-49947431 None:intergenic 45.0%
TTCAAGGTTGTGAAGGTCTC+CGG + chr1_1:49947501-49947520 Msa0026210:CDS 45.0%
GTAAGACAACCAGAGGATAG+GGG - chr1_1:49947745-49947764 None:intergenic 45.0%
GAGTAAGACAACCAGAGGAT+AGG - chr1_1:49947747-49947766 None:intergenic 45.0%
GTCAATGCTGACAAGATCGT+GGG - chr1_1:49947875-49947894 None:intergenic 45.0%
AGTCAATGCTGACAAGATCG+TGG - chr1_1:49947876-49947895 None:intergenic 45.0%
! GGTTAGTTAGAGTTACCCCA+TGG - chr1_1:49946022-49946041 None:intergenic 45.0%
GCAGAAATGGCAATGAAGGA+GGG - chr1_1:49946043-49946062 None:intergenic 45.0%
TGCAGAAATGGCAATGAAGG+AGG - chr1_1:49946044-49946063 None:intergenic 45.0%
GAGCTGATAAGCTAGGCTAT+AGG + chr1_1:49946432-49946451 Msa0026210:intron 45.0%
GCTGATAAGCTAGGCTATAG+GGG + chr1_1:49946434-49946453 Msa0026210:intron 45.0%
TTCACAACTAAGGGTCCGTT+TGG - chr1_1:49946736-49946755 None:intergenic 45.0%
AGTCTCATCTTGGGAATGAG+TGG + chr1_1:49947004-49947023 Msa0026210:CDS 45.0%
! GAGTGGAAGAAACCTTTTGC+TGG + chr1_1:49947021-49947040 Msa0026210:CDS 45.0%
CAGCTATTCGTAAATGTGCC+AGG + chr1_1:49947198-49947217 Msa0026210:CDS 45.0%
CAACCATCAGTCACACAAGA+TGG - chr1_1:49947412-49947431 None:intergenic 45.0%
TTCAAGGTTGTGAAGGTCTC+CGG + chr1_1:49947501-49947520 Msa0026210:CDS 45.0%
GTAAGACAACCAGAGGATAG+GGG - chr1_1:49947745-49947764 None:intergenic 45.0%
GAGTAAGACAACCAGAGGAT+AGG - chr1_1:49947747-49947766 None:intergenic 45.0%
GTCAATGCTGACAAGATCGT+GGG - chr1_1:49947875-49947894 None:intergenic 45.0%
AGTCAATGCTGACAAGATCG+TGG - chr1_1:49947876-49947895 None:intergenic 45.0%
!!! TTAATTTAAATTTGTTATTT+AGG + chr1_1:49946143-49946162 Msa0026210:intron 5.0%
!!! TTAATTTAAATTTGTTATTT+AGG + chr1_1:49946143-49946162 Msa0026210:intron 5.0%
!! AGGGTTTTCGTCTTCGGTGT+TGG + chr1_1:49945937-49945956 Msa0026210:five_prime_UTR 50.0%
TTGAGCTCGGAGGTTATGGA+GGG - chr1_1:49945981-49946000 None:intergenic 50.0%
TGTGTTGAGCTCGGAGGTTA+TGG - chr1_1:49945985-49946004 None:intergenic 50.0%
TGGTCCTTGTGTGTTGAGCT+CGG - chr1_1:49945994-49946013 None:intergenic 50.0%
GAGGACAATTCCCTTTGCGT+GGG - chr1_1:49947052-49947071 None:intergenic 50.0%
GCTGCCTTTGTTCCTAACGA+TGG + chr1_1:49947251-49947270 Msa0026210:CDS 50.0%
CTTGTGTGACTGATGGTTGC+AGG + chr1_1:49947413-49947432 Msa0026210:intron 50.0%
TGGAAGAAAGGGTCATGCTG+TGG + chr1_1:49947458-49947477 Msa0026210:CDS 50.0%
GGAAGAAAGGGTCATGCTGT+GGG + chr1_1:49947459-49947478 Msa0026210:CDS 50.0%
CATGCTGTGGGAGATATTCC+TGG + chr1_1:49947471-49947490 Msa0026210:CDS 50.0%
TCAAGGTTGTGAAGGTCTCC+GGG + chr1_1:49947502-49947521 Msa0026210:CDS 50.0%
AAGAGCAAGAAGAGACACCC+CGG - chr1_1:49947523-49947542 None:intergenic 50.0%
GTGAATCTTCCCCTATCCTC+TGG + chr1_1:49947733-49947752 Msa0026210:three_prime_UTR 50.0%
!! AGGGTTTTCGTCTTCGGTGT+TGG + chr1_1:49945937-49945956 Msa0026210:five_prime_UTR 50.0%
TTGAGCTCGGAGGTTATGGA+GGG - chr1_1:49945981-49946000 None:intergenic 50.0%
TGTGTTGAGCTCGGAGGTTA+TGG - chr1_1:49945985-49946004 None:intergenic 50.0%
TGGTCCTTGTGTGTTGAGCT+CGG - chr1_1:49945994-49946013 None:intergenic 50.0%
GAGGACAATTCCCTTTGCGT+GGG - chr1_1:49947052-49947071 None:intergenic 50.0%
GCTGCCTTTGTTCCTAACGA+TGG + chr1_1:49947251-49947270 Msa0026210:CDS 50.0%
CTTGTGTGACTGATGGTTGC+AGG + chr1_1:49947413-49947432 Msa0026210:intron 50.0%
TGGAAGAAAGGGTCATGCTG+TGG + chr1_1:49947458-49947477 Msa0026210:CDS 50.0%
GGAAGAAAGGGTCATGCTGT+GGG + chr1_1:49947459-49947478 Msa0026210:CDS 50.0%
CATGCTGTGGGAGATATTCC+TGG + chr1_1:49947471-49947490 Msa0026210:CDS 50.0%
TCAAGGTTGTGAAGGTCTCC+GGG + chr1_1:49947502-49947521 Msa0026210:CDS 50.0%
AAGAGCAAGAAGAGACACCC+CGG - chr1_1:49947523-49947542 None:intergenic 50.0%
GTGAATCTTCCCCTATCCTC+TGG + chr1_1:49947733-49947752 Msa0026210:three_prime_UTR 50.0%
GTTGAGCTCGGAGGTTATGG+AGG - chr1_1:49945982-49946001 None:intergenic 55.0%
ACCTCCGAGCTCAACACACA+AGG + chr1_1:49945987-49946006 Msa0026210:five_prime_UTR 55.0%
TCCTTGTGTGTTGAGCTCGG+AGG - chr1_1:49945991-49946010 None:intergenic 55.0%
ACACAAGGACCAAGCAGCCA+TGG + chr1_1:49946002-49946021 Msa0026210:exon 55.0%
CACAAGGACCAAGCAGCCAT+GGG + chr1_1:49946003-49946022 Msa0026210:exon 55.0%
ACAAGGACCAAGCAGCCATG+GGG + chr1_1:49946004-49946023 Msa0026210:exon 55.0%
AGAGTTACCCCATGGCTGCT+TGG - chr1_1:49946014-49946033 None:intergenic 55.0%
GCGTGGGAAGAACCAGCAAA+AGG - chr1_1:49947036-49947055 None:intergenic 55.0%
!! TGCTGGTTCTTCCCACGCAA+AGG + chr1_1:49947038-49947057 Msa0026210:CDS 55.0%
! GCTGGTTCTTCCCACGCAAA+GGG + chr1_1:49947039-49947058 Msa0026210:CDS 55.0%
CGAGGACAATTCCCTTTGCG+TGG - chr1_1:49947053-49947072 None:intergenic 55.0%
CAAGGTTGTGAAGGTCTCCG+GGG + chr1_1:49947503-49947522 Msa0026210:CDS 55.0%
GTTGAGCTCGGAGGTTATGG+AGG - chr1_1:49945982-49946001 None:intergenic 55.0%
ACCTCCGAGCTCAACACACA+AGG + chr1_1:49945987-49946006 Msa0026210:five_prime_UTR 55.0%
TCCTTGTGTGTTGAGCTCGG+AGG - chr1_1:49945991-49946010 None:intergenic 55.0%
ACACAAGGACCAAGCAGCCA+TGG + chr1_1:49946002-49946021 Msa0026210:exon 55.0%
CACAAGGACCAAGCAGCCAT+GGG + chr1_1:49946003-49946022 Msa0026210:exon 55.0%
ACAAGGACCAAGCAGCCATG+GGG + chr1_1:49946004-49946023 Msa0026210:exon 55.0%
AGAGTTACCCCATGGCTGCT+TGG - chr1_1:49946014-49946033 None:intergenic 55.0%
GCGTGGGAAGAACCAGCAAA+AGG - chr1_1:49947036-49947055 None:intergenic 55.0%
!! TGCTGGTTCTTCCCACGCAA+AGG + chr1_1:49947038-49947057 Msa0026210:CDS 55.0%
! GCTGGTTCTTCCCACGCAAA+GGG + chr1_1:49947039-49947058 Msa0026210:CDS 55.0%
CGAGGACAATTCCCTTTGCG+TGG - chr1_1:49947053-49947072 None:intergenic 55.0%
CAAGGTTGTGAAGGTCTCCG+GGG + chr1_1:49947503-49947522 Msa0026210:CDS 55.0%
GCAAGCTGAAGTCTCACCGC+AGG + chr1_1:49946950-49946969 Msa0026210:CDS 60.0%
AGCTGAAGTCTCACCGCAGG+AGG + chr1_1:49946953-49946972 Msa0026210:CDS 60.0%
AGTCTCACCGCAGGAGGCAA+AGG + chr1_1:49946959-49946978 Msa0026210:CDS 60.0%
TCACCGCAGGAGGCAAAGGT+GGG + chr1_1:49946963-49946982 Msa0026210:CDS 60.0%
GCAAGCTGAAGTCTCACCGC+AGG + chr1_1:49946950-49946969 Msa0026210:CDS 60.0%
AGCTGAAGTCTCACCGCAGG+AGG + chr1_1:49946953-49946972 Msa0026210:CDS 60.0%
AGTCTCACCGCAGGAGGCAA+AGG + chr1_1:49946959-49946978 Msa0026210:CDS 60.0%
TCACCGCAGGAGGCAAAGGT+GGG + chr1_1:49946963-49946982 Msa0026210:CDS 60.0%
CTCACCGCAGGAGGCAAAGG+TGG + chr1_1:49946962-49946981 Msa0026210:CDS 65.0%
CAGCCCACCTTTGCCTCCTG+CGG - chr1_1:49946969-49946988 None:intergenic 65.0%
CTCACCGCAGGAGGCAAAGG+TGG + chr1_1:49946962-49946981 Msa0026210:CDS 65.0%
CAGCCCACCTTTGCCTCCTG+CGG - chr1_1:49946969-49946988 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 49945918 49947959 49945918 ID=Msa0026210;Name=Msa0026210
chr1_1 mRNA 49945918 49947959 49945918 ID=Msa0026210-mRNA-1;Parent=Msa0026210;Name=Msa0026210-mRNA-1;_AED=0.03;_eAED=0.03;_QI=103|1|1|1|0.75|0.6|5|363|142
chr1_1 exon 49945918 49946025 49945918 ID=Msa0026210-mRNA-1:exon:14430;Parent=Msa0026210-mRNA-1
chr1_1 exon 49946924 49947079 49946924 ID=Msa0026210-mRNA-1:exon:14431;Parent=Msa0026210-mRNA-1
chr1_1 exon 49947172 49947298 49947172 ID=Msa0026210-mRNA-1:exon:14432;Parent=Msa0026210-mRNA-1
chr1_1 exon 49947435 49947866 49947435 ID=Msa0026210-mRNA-1:exon:14433;Parent=Msa0026210-mRNA-1
chr1_1 exon 49947888 49947959 49947888 ID=Msa0026210-mRNA-1:exon:14434;Parent=Msa0026210-mRNA-1
chr1_1 five_prime_UTR 49945918 49946020 49945918 ID=Msa0026210-mRNA-1:five_prime_utr;Parent=Msa0026210-mRNA-1
chr1_1 CDS 49946021 49946025 49946021 ID=Msa0026210-mRNA-1:cds;Parent=Msa0026210-mRNA-1
chr1_1 CDS 49946924 49947079 49946924 ID=Msa0026210-mRNA-1:cds;Parent=Msa0026210-mRNA-1
chr1_1 CDS 49947172 49947298 49947172 ID=Msa0026210-mRNA-1:cds;Parent=Msa0026210-mRNA-1
chr1_1 CDS 49947435 49947575 49947435 ID=Msa0026210-mRNA-1:cds;Parent=Msa0026210-mRNA-1
chr1_1 three_prime_UTR 49947576 49947866 49947576 ID=Msa0026210-mRNA-1:three_prime_utr;Parent=Msa0026210-mRNA-1
chr1_1 three_prime_UTR 49947888 49947959 49947888 ID=Msa0026210-mRNA-1:three_prime_utr;Parent=Msa0026210-mRNA-1
Gene Sequence

>Msa0026210

ATGGGGAAGACACATGGAATGGGAGCTGCTCGCAAGCTGAAGTCTCACCGCAGGAGGCAAAGGTGGGCTGACAAGTCATACAAGAAGTCTCATCTTGGGAATGAGTGGAAGAAACCTTTTGCTGGTTCTTCCCACGCAAAGGGAATTGTCCTCGAAAAGATTGGTATTGAGGCTAAACAGCCCAATTCAGCTATTCGTAAATGTGCCAGGGTACAACTAATCAAGAATGGAAAGAAAATTGCTGCCTTTGTTCCTAACGATGGTTGTTTAAACTACATCGAAGAAAATGATGAAGTTTTGATTGCTGGATTTGGAAGAAAGGGTCATGCTGTGGGAGATATTCCTGGAGTTAGATTCAAGGTTGTGAAGGTCTCCGGGGTGTCTCTTCTTGCTCTTTTCAAGGAGAAGAAGGAGAAGCCAAGATCTTAG
Protein sequence

>Msa0026210

MGKTHGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS*