AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0040690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0040690 MtrunA17_Chr4g0051921 100.000 130 0 0 1 130 1 130 4.54e-94 267
Msa0040690 MtrunA17_Chr1g0205971 100.000 130 0 0 1 130 1 130 4.54e-94 267
Msa0040690 MtrunA17_Chr4g0065831 99.231 130 1 0 1 130 1 130 2.23e-93 265
Msa0040690 MtrunA17_Chr8g0389371 52.000 125 60 0 6 130 5 129 7.69e-46 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0040690 AT5G59850.1 98.462 130 2 0 1 130 1 130 5.10e-93 265
Msa0040690 AT1G07770.2 98.462 130 2 0 1 130 1 130 5.10e-93 265
Msa0040690 AT1G07770.3 98.462 130 2 0 1 130 1 130 5.10e-93 265
Msa0040690 AT1G07770.1 98.462 130 2 0 1 130 1 130 5.10e-93 265
Msa0040690 AT3G46040.1 96.923 130 4 0 1 130 1 130 1.15e-91 261
Msa0040690 AT2G39590.1 91.538 130 11 0 1 130 1 130 4.79e-87 249
Msa0040690 AT4G29430.1 54.400 125 57 0 6 130 5 129 1.57e-47 149
Msa0040690 AT2G19720.1 53.600 125 58 0 6 130 5 129 1.77e-45 144

Find 41 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACTAACTAAAGAATTATT+TGG 0.203202 1_1:+70970328 None:intergenic
GTTGAGACACTGGCGGAATT+AGG 0.225976 1_1:+70972415 None:intergenic
AAATTCTCAACATATGAAAT+TGG 0.297912 1_1:+70970563 None:intergenic
AGTGATTATCAAATTCCTTA+TGG 0.311584 1_1:-70972144 Msa0040690:CDS
CTAAGAAACTATTATGCTCT+TGG 0.348622 1_1:-70970393 Msa0040690:intron
TTGAGACACTGGCGGAATTA+GGG 0.357960 1_1:+70972416 None:intergenic
TTGTGTTTGTAGGATACATT+GGG 0.378729 1_1:-70972001 Msa0040690:intron
TTTACATGGATATTGTAATC+TGG 0.380843 1_1:-70970504 Msa0040690:three_prime_UTR
GACTACCTCTGCTGGTATCA+TGG 0.414748 1_1:-70970661 Msa0040690:CDS
ACCACCAACATTCTTTCTCC+TGG 0.414976 1_1:+70970626 None:intergenic
GAAAGCGTCAAGTTATGATT+AGG 0.452540 1_1:-70972178 Msa0040690:CDS
TGGAGAAGAAGAACGGAGGC+CGG 0.461327 1_1:+70972440 None:intergenic
TTTGTGTTTGTAGGATACAT+TGG 0.464282 1_1:-70972002 Msa0040690:intron
GGAGAAGAAGAACGGAGGCC+GGG 0.474192 1_1:+70972441 None:intergenic
AGCAGCTTACACAATTTCTC+TGG 0.488633 1_1:-70972379 Msa0040690:intron
ATGGATATTGTAATCTGGAT+AGG 0.490423 1_1:-70970499 Msa0040690:three_prime_UTR
CAGTCTCTGCGTTGAGACAC+TGG 0.499598 1_1:+70972405 None:intergenic
AATGTTGGTGGTAAAGTGTT+GGG 0.506719 1_1:-70970615 Msa0040690:CDS
TTGAATATGTCGATGATCAC+AGG 0.509301 1_1:-70971974 Msa0040690:CDS
AAAATTGTCGTCGAATTGAA+TGG 0.519692 1_1:-70971945 Msa0040690:CDS
AGATTGAAGGATGGACTGCT+AGG 0.524175 1_1:-70971869 Msa0040690:CDS
GACACTGGCGGAATTAGGGT+TGG 0.529860 1_1:+70972420 None:intergenic
ATTGTCTTGACTACCTCTGC+TGG 0.534592 1_1:-70970669 Msa0040690:CDS
GAATGTTGGTGGTAAAGTGT+TGG 0.537027 1_1:-70970616 Msa0040690:CDS
TTAGGGTTGGAGAAGAAGAA+CGG 0.545337 1_1:+70972433 None:intergenic
TATGTCGATGATCACAGGTC+TGG 0.547616 1_1:-70971969 Msa0040690:CDS
TCATGGATCATGAAGAGGCC+AGG 0.549802 1_1:-70970644 Msa0040690:CDS
TAGGCTTCTTCCCTCAAGAC+AGG 0.576488 1_1:-70971850 Msa0040690:intron
GCCAGGAGAAAGAATGTTGG+TGG 0.584787 1_1:-70970627 Msa0040690:CDS
GTTGGTGTCAAAGAGATTGA+AGG 0.610557 1_1:-70971882 Msa0040690:CDS
CTTATGGTCATGCAAAAGCA+TGG 0.625786 1_1:-70972128 Msa0040690:intron
ATGATCCATGATACCAGCAG+AGG 0.644078 1_1:+70970656 None:intergenic
TGTGTTTGTAGGATACATTG+GGG 0.648921 1_1:-70972000 Msa0040690:intron
TGGTATCATGGATCATGAAG+AGG 0.653772 1_1:-70970649 Msa0040690:CDS
GAGGCCAGGAGAAAGAATGT+TGG 0.655684 1_1:-70970630 Msa0040690:CDS
AATGGTAGATTGAACAAGTG+TGG 0.659687 1_1:-70971927 Msa0040690:CDS
GTGTCAAAGAGATTGAAGGA+TGG 0.661917 1_1:-70971878 Msa0040690:CDS
ATGTACAATGCTGAGAAACG+TGG 0.686253 1_1:-70972200 Msa0040690:CDS
TTGACACCAACATCAAAACG+AGG 0.729538 1_1:+70971894 None:intergenic
TCTCTGCGTTGAGACACTGG+CGG 0.739446 1_1:+70972408 None:intergenic
GGGTTGGAGAAGAAGAACGG+AGG 0.745686 1_1:+70972436 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAAAATATTAAAAGAT+GGG + chr1_1:70971891-70971910 None:intergenic 10.0%
!! TAAATGAAAATATTAAAAGA+TGG + chr1_1:70971892-70971911 None:intergenic 10.0%
!!! GTTTTTTTTTTTTTTTTACA+TGG - chr1_1:70972271-70972290 Msa0040690:intron 10.0%
!! AAATGAAAATATTAAAAGAT+GGG + chr1_1:70971891-70971910 None:intergenic 10.0%
!! TAAATGAAAATATTAAAAGA+TGG + chr1_1:70971892-70971911 None:intergenic 10.0%
!!! GTTTTTTTTTTTTTTTTACA+TGG - chr1_1:70972271-70972290 Msa0040690:intron 10.0%
!! CTATAAAACAAACTTAAATA+AGG + chr1_1:70971278-70971297 None:intergenic 15.0%
!! TAAACATTACAATTGAATAA+TGG + chr1_1:70971943-70971962 None:intergenic 15.0%
!! CTATAAAACAAACTTAAATA+AGG + chr1_1:70971278-70971297 None:intergenic 15.0%
!! TAAACATTACAATTGAATAA+TGG + chr1_1:70971943-70971962 None:intergenic 15.0%
!! AAATCAAAGAAATTCAGAAA+GGG + chr1_1:70970453-70970472 None:intergenic 20.0%
!! ATTTATTGTTTGATTCATGT+AGG - chr1_1:70970703-70970722 Msa0040690:intron 20.0%
!! CAAATTTATAAGACAAAACT+CGG + chr1_1:70970977-70970996 None:intergenic 20.0%
!!! TCAAACTACTAACATTTTTA+TGG + chr1_1:70971010-70971029 None:intergenic 20.0%
!!! TGATAGTTTAATTTACATGA+TGG - chr1_1:70971027-70971046 Msa0040690:intron 20.0%
!! TCAAATAAGTTAATCCAAAT+AGG + chr1_1:70971081-70971100 None:intergenic 20.0%
!!! CTTTCTAATTTATTTGCTTT+TGG - chr1_1:70971422-70971441 Msa0040690:intron 20.0%
!! ATTAGAAATGATTCATGATT+AGG + chr1_1:70971659-70971678 None:intergenic 20.0%
!! AAAATATTAAAAGATGGGAT+GGG + chr1_1:70971886-70971905 None:intergenic 20.0%
!! TGTAATGTTTATATACTTGT+CGG - chr1_1:70971952-70971971 Msa0040690:CDS 20.0%
!! AAATTCTCAACATATGAAAT+TGG + chr1_1:70972229-70972248 None:intergenic 20.0%
!!! TTTTGTGCTAAATTGAATTT+TGG - chr1_1:70972343-70972362 Msa0040690:intron 20.0%
!!! TTTGTGCTAAATTGAATTTT+GGG - chr1_1:70972344-70972363 Msa0040690:intron 20.0%
!! AAATCAAAGAAATTCAGAAA+GGG + chr1_1:70970453-70970472 None:intergenic 20.0%
!! ATTTATTGTTTGATTCATGT+AGG - chr1_1:70970703-70970722 Msa0040690:intron 20.0%
!! CAAATTTATAAGACAAAACT+CGG + chr1_1:70970977-70970996 None:intergenic 20.0%
!!! TCAAACTACTAACATTTTTA+TGG + chr1_1:70971010-70971029 None:intergenic 20.0%
!!! TGATAGTTTAATTTACATGA+TGG - chr1_1:70971027-70971046 Msa0040690:intron 20.0%
!! TCAAATAAGTTAATCCAAAT+AGG + chr1_1:70971081-70971100 None:intergenic 20.0%
!!! CTTTCTAATTTATTTGCTTT+TGG - chr1_1:70971422-70971441 Msa0040690:intron 20.0%
!! ATTAGAAATGATTCATGATT+AGG + chr1_1:70971659-70971678 None:intergenic 20.0%
!! AAAATATTAAAAGATGGGAT+GGG + chr1_1:70971886-70971905 None:intergenic 20.0%
!! TGTAATGTTTATATACTTGT+CGG - chr1_1:70971952-70971971 Msa0040690:CDS 20.0%
!! AAATTCTCAACATATGAAAT+TGG + chr1_1:70972229-70972248 None:intergenic 20.0%
!!! TTTTGTGCTAAATTGAATTT+TGG - chr1_1:70972343-70972362 Msa0040690:intron 20.0%
!!! TTTGTGCTAAATTGAATTTT+GGG - chr1_1:70972344-70972363 Msa0040690:intron 20.0%
! CAAATCAAAGAAATTCAGAA+AGG + chr1_1:70970454-70970473 None:intergenic 25.0%
! CTTTCTGAATTTCTTTGATT+TGG - chr1_1:70970452-70970471 Msa0040690:three_prime_UTR 25.0%
!!! GAAATGTTTTAGAGAAAAGA+TGG - chr1_1:70970531-70970550 Msa0040690:three_prime_UTR 25.0%
!!! GAATTTGATAATCACTTTTG+AGG + chr1_1:70970641-70970660 None:intergenic 25.0%
! AGTGATTATCAAATTCCTTA+TGG - chr1_1:70970645-70970664 Msa0040690:CDS 25.0%
!! TTGTATACTTTTGTGTTTGT+AGG - chr1_1:70970778-70970797 Msa0040690:intron 25.0%
! TTGTTTGTTTCCTTAATATG+TGG - chr1_1:70971380-70971399 Msa0040690:intron 25.0%
! TGTTCTATTTCCACATATTA+AGG + chr1_1:70971393-70971412 None:intergenic 25.0%
!!! CTAATAGGCTTTTAAAACTT+GGG - chr1_1:70971470-70971489 Msa0040690:intron 25.0%
!! TTAGTAGGCTTTTAAATCTT+GGG - chr1_1:70971497-70971516 Msa0040690:intron 25.0%
! CTGACTTATACTTCATATAT+TGG - chr1_1:70971565-70971584 Msa0040690:intron 25.0%
! TAAATTCAAACCGTTCTTTA+TGG - chr1_1:70971688-70971707 Msa0040690:intron 25.0%
! ATAGATGATAGTCAAATAGT+CGG + chr1_1:70971749-70971768 None:intergenic 25.0%
! CCATTAAAGCATAATAAGAA+GGG + chr1_1:70971780-70971799 None:intergenic 25.0%
! CCTTCTTATTATGCTTTAAT+GGG - chr1_1:70971778-70971797 Msa0040690:intron 25.0%
! CTTCTTATTATGCTTTAATG+GGG - chr1_1:70971779-70971798 Msa0040690:intron 25.0%
! GAAAATATTAAAAGATGGGA+TGG + chr1_1:70971887-70971906 None:intergenic 25.0%
! AATTGAATAATGGTTGCAAA+AGG + chr1_1:70971933-70971952 None:intergenic 25.0%
!!! ATTTTAGCAACCAATAGTTA+GGG + chr1_1:70972084-70972103 None:intergenic 25.0%
! TTTACATGGATATTGTAATC+TGG - chr1_1:70972285-70972304 Msa0040690:intron 25.0%
!!! AATTGAATTTTGGGTAATCT+TGG - chr1_1:70972353-70972372 Msa0040690:intron 25.0%
! CAAATCAAAGAAATTCAGAA+AGG + chr1_1:70970454-70970473 None:intergenic 25.0%
! CTTTCTGAATTTCTTTGATT+TGG - chr1_1:70970452-70970471 Msa0040690:three_prime_UTR 25.0%
!!! GAAATGTTTTAGAGAAAAGA+TGG - chr1_1:70970531-70970550 Msa0040690:three_prime_UTR 25.0%
!!! GAATTTGATAATCACTTTTG+AGG + chr1_1:70970641-70970660 None:intergenic 25.0%
! AGTGATTATCAAATTCCTTA+TGG - chr1_1:70970645-70970664 Msa0040690:CDS 25.0%
!! TTGTATACTTTTGTGTTTGT+AGG - chr1_1:70970778-70970797 Msa0040690:intron 25.0%
! TTGTTTGTTTCCTTAATATG+TGG - chr1_1:70971380-70971399 Msa0040690:intron 25.0%
! TGTTCTATTTCCACATATTA+AGG + chr1_1:70971393-70971412 None:intergenic 25.0%
!!! CTAATAGGCTTTTAAAACTT+GGG - chr1_1:70971470-70971489 Msa0040690:intron 25.0%
!! TTAGTAGGCTTTTAAATCTT+GGG - chr1_1:70971497-70971516 Msa0040690:intron 25.0%
! CTGACTTATACTTCATATAT+TGG - chr1_1:70971565-70971584 Msa0040690:intron 25.0%
! TAAATTCAAACCGTTCTTTA+TGG - chr1_1:70971688-70971707 Msa0040690:intron 25.0%
! ATAGATGATAGTCAAATAGT+CGG + chr1_1:70971749-70971768 None:intergenic 25.0%
! CCATTAAAGCATAATAAGAA+GGG + chr1_1:70971780-70971799 None:intergenic 25.0%
! CCTTCTTATTATGCTTTAAT+GGG - chr1_1:70971778-70971797 Msa0040690:intron 25.0%
! CTTCTTATTATGCTTTAATG+GGG - chr1_1:70971779-70971798 Msa0040690:intron 25.0%
! GAAAATATTAAAAGATGGGA+TGG + chr1_1:70971887-70971906 None:intergenic 25.0%
! AATTGAATAATGGTTGCAAA+AGG + chr1_1:70971933-70971952 None:intergenic 25.0%
!!! ATTTTAGCAACCAATAGTTA+GGG + chr1_1:70972084-70972103 None:intergenic 25.0%
! TTTACATGGATATTGTAATC+TGG - chr1_1:70972285-70972304 Msa0040690:intron 25.0%
!!! AATTGAATTTTGGGTAATCT+TGG - chr1_1:70972353-70972372 Msa0040690:intron 25.0%
!! TTTTAGAGAAAAGATGGTGA+GGG - chr1_1:70970537-70970556 Msa0040690:three_prime_UTR 30.0%
!! TTGATAATCACTTTTGAGGA+TGG + chr1_1:70970637-70970656 None:intergenic 30.0%
TGTTTGATTCATGTAGGATT+AGG - chr1_1:70970709-70970728 Msa0040690:intron 30.0%
TTTGTGTTTGTAGGATACAT+TGG - chr1_1:70970787-70970806 Msa0040690:intron 30.0%
TTGTGTTTGTAGGATACATT+GGG - chr1_1:70970788-70970807 Msa0040690:intron 30.0%
AAAATTGTCGTCGAATTGAA+TGG - chr1_1:70970844-70970863 Msa0040690:intron 30.0%
! ATCCATTGACATAAGTTTTG+TGG - chr1_1:70971105-70971124 Msa0040690:intron 30.0%
!! TCCATTGACATAAGTTTTGT+GGG - chr1_1:70971106-70971125 Msa0040690:intron 30.0%
AGAACTTATGAAATCAGCTA+TGG - chr1_1:70971138-70971157 Msa0040690:intron 30.0%
AAAAAAGCTGACAAAAGCTT+GGG + chr1_1:70971171-70971190 None:intergenic 30.0%
AAAAAAAGCTGACAAAAGCT+TGG + chr1_1:70971172-70971191 None:intergenic 30.0%
!!! ATTTATTTGCTTTTGGTTCC+TGG - chr1_1:70971429-70971448 Msa0040690:intron 30.0%
TCCTGGAATACCTTTATATT+AGG - chr1_1:70971446-70971465 Msa0040690:intron 30.0%
ACCTTTATATTAGGCCTAAT+AGG - chr1_1:70971455-70971474 Msa0040690:intron 30.0%
!!! CCAAGTTTTAAAAGCCTATT+AGG + chr1_1:70971472-70971491 None:intergenic 30.0%
!!! CCTAATAGGCTTTTAAAACT+TGG - chr1_1:70971469-70971488 Msa0040690:intron 30.0%
! GTTAGTAGGCTTTTAAATCT+TGG - chr1_1:70971496-70971515 Msa0040690:intron 30.0%
!! TTTAAATCTTGGGTTGGAAT+TGG - chr1_1:70971507-70971526 Msa0040690:intron 30.0%
CCCTTCTTATTATGCTTTAA+TGG - chr1_1:70971777-70971796 Msa0040690:intron 30.0%
CCCATTAAAGCATAATAAGA+AGG + chr1_1:70971781-70971800 None:intergenic 30.0%
GTTTCATTTGATCTTTCTTG+TGG - chr1_1:70972057-70972076 Msa0040690:intron 30.0%
!! GATTTTAGCAACCAATAGTT+AGG + chr1_1:70972085-70972104 None:intergenic 30.0%
TTGCTAAAATCATGCAGTTT+GGG - chr1_1:70972094-70972113 Msa0040690:intron 30.0%
!!! AGTGTTGGGTTTTTTCTATT+AGG - chr1_1:70972188-70972207 Msa0040690:CDS 30.0%
!!! GTGTTGGGTTTTTTCTATTA+GGG - chr1_1:70972189-70972208 Msa0040690:CDS 30.0%
!! AGAATTTTGAGTGTTTGTGA+TGG - chr1_1:70972242-70972261 Msa0040690:CDS 30.0%
ATGGATATTGTAATCTGGAT+AGG - chr1_1:70972290-70972309 Msa0040690:intron 30.0%
CTAAGAAACTATTATGCTCT+TGG - chr1_1:70972396-70972415 Msa0040690:five_prime_UTR 30.0%
!!! CAATTTTGAAACACAAGCTA+GGG + chr1_1:70972423-70972442 None:intergenic 30.0%
!!! ACAATTTTGAAACACAAGCT+AGG + chr1_1:70972424-70972443 None:intergenic 30.0%
!! TTTTAGAGAAAAGATGGTGA+GGG - chr1_1:70970537-70970556 Msa0040690:three_prime_UTR 30.0%
!! TTGATAATCACTTTTGAGGA+TGG + chr1_1:70970637-70970656 None:intergenic 30.0%
TGTTTGATTCATGTAGGATT+AGG - chr1_1:70970709-70970728 Msa0040690:intron 30.0%
TTTGTGTTTGTAGGATACAT+TGG - chr1_1:70970787-70970806 Msa0040690:intron 30.0%
TTGTGTTTGTAGGATACATT+GGG - chr1_1:70970788-70970807 Msa0040690:intron 30.0%
AAAATTGTCGTCGAATTGAA+TGG - chr1_1:70970844-70970863 Msa0040690:intron 30.0%
! ATCCATTGACATAAGTTTTG+TGG - chr1_1:70971105-70971124 Msa0040690:intron 30.0%
!! TCCATTGACATAAGTTTTGT+GGG - chr1_1:70971106-70971125 Msa0040690:intron 30.0%
AGAACTTATGAAATCAGCTA+TGG - chr1_1:70971138-70971157 Msa0040690:intron 30.0%
AAAAAAGCTGACAAAAGCTT+GGG + chr1_1:70971171-70971190 None:intergenic 30.0%
AAAAAAAGCTGACAAAAGCT+TGG + chr1_1:70971172-70971191 None:intergenic 30.0%
!!! ATTTATTTGCTTTTGGTTCC+TGG - chr1_1:70971429-70971448 Msa0040690:intron 30.0%
TCCTGGAATACCTTTATATT+AGG - chr1_1:70971446-70971465 Msa0040690:intron 30.0%
ACCTTTATATTAGGCCTAAT+AGG - chr1_1:70971455-70971474 Msa0040690:intron 30.0%
!!! CCAAGTTTTAAAAGCCTATT+AGG + chr1_1:70971472-70971491 None:intergenic 30.0%
!!! CCTAATAGGCTTTTAAAACT+TGG - chr1_1:70971469-70971488 Msa0040690:intron 30.0%
! GTTAGTAGGCTTTTAAATCT+TGG - chr1_1:70971496-70971515 Msa0040690:intron 30.0%
!! TTTAAATCTTGGGTTGGAAT+TGG - chr1_1:70971507-70971526 Msa0040690:intron 30.0%
CCCTTCTTATTATGCTTTAA+TGG - chr1_1:70971777-70971796 Msa0040690:intron 30.0%
CCCATTAAAGCATAATAAGA+AGG + chr1_1:70971781-70971800 None:intergenic 30.0%
GTTTCATTTGATCTTTCTTG+TGG - chr1_1:70972057-70972076 Msa0040690:intron 30.0%
!! GATTTTAGCAACCAATAGTT+AGG + chr1_1:70972085-70972104 None:intergenic 30.0%
TTGCTAAAATCATGCAGTTT+GGG - chr1_1:70972094-70972113 Msa0040690:intron 30.0%
!!! AGTGTTGGGTTTTTTCTATT+AGG - chr1_1:70972188-70972207 Msa0040690:CDS 30.0%
!!! GTGTTGGGTTTTTTCTATTA+GGG - chr1_1:70972189-70972208 Msa0040690:CDS 30.0%
!! AGAATTTTGAGTGTTTGTGA+TGG - chr1_1:70972242-70972261 Msa0040690:CDS 30.0%
ATGGATATTGTAATCTGGAT+AGG - chr1_1:70972290-70972309 Msa0040690:intron 30.0%
CTAAGAAACTATTATGCTCT+TGG - chr1_1:70972396-70972415 Msa0040690:five_prime_UTR 30.0%
!!! CAATTTTGAAACACAAGCTA+GGG + chr1_1:70972423-70972442 None:intergenic 30.0%
!!! ACAATTTTGAAACACAAGCT+AGG + chr1_1:70972424-70972443 None:intergenic 30.0%
!!! GTTTTAGAGAAAAGATGGTG+AGG - chr1_1:70970536-70970555 Msa0040690:three_prime_UTR 35.0%
!! GAAAGCGTCAAGTTATGATT+AGG - chr1_1:70970611-70970630 Msa0040690:CDS 35.0%
TGTGTTTGTAGGATACATTG+GGG - chr1_1:70970789-70970808 Msa0040690:intron 35.0%
TTGAATATGTCGATGATCAC+AGG - chr1_1:70970815-70970834 Msa0040690:intron 35.0%
AATGGTAGATTGAACAAGTG+TGG - chr1_1:70970862-70970881 Msa0040690:intron 35.0%
!! ATTAGTCCTCGTTTTGATGT+TGG - chr1_1:70970889-70970908 Msa0040690:intron 35.0%
TCCCACAAAACTTATGTCAA+TGG + chr1_1:70971110-70971129 None:intergenic 35.0%
!! ATAAGTTTTGTGGGACTGTT+TGG - chr1_1:70971115-70971134 Msa0040690:intron 35.0%
TATAGTTCCTAACTATCGTG+TGG - chr1_1:70971293-70971312 Msa0040690:intron 35.0%
!! GCCTAATATAAAGGTATTCC+AGG + chr1_1:70971450-70971469 None:intergenic 35.0%
GCCTATTAGGCCTAATATAA+AGG + chr1_1:70971459-70971478 None:intergenic 35.0%
!!! TAGGCTTTTAAAACTTGGGT+TGG - chr1_1:70971474-70971493 Msa0040690:intron 35.0%
!! TAAAACTTGGGTTGGTTAGT+AGG - chr1_1:70971482-70971501 Msa0040690:intron 35.0%
! TAGGCTTTTAAATCTTGGGT+TGG - chr1_1:70971501-70971520 Msa0040690:intron 35.0%
CTTAAGTGAGTGAAACATCT+GGG + chr1_1:70971613-70971632 None:intergenic 35.0%
CAGATGTTTCACTCACTTAA+GGG - chr1_1:70971612-70971631 Msa0040690:intron 35.0%
TTCAAACCGTTCTTTATGGT+TGG - chr1_1:70971692-70971711 Msa0040690:intron 35.0%
TCAAACCGTTCTTTATGGTT+GGG - chr1_1:70971693-70971712 Msa0040690:intron 35.0%
ATACACCCAACCATAAAGAA+CGG + chr1_1:70971701-70971720 None:intergenic 35.0%
CTTATTATGCTTTAATGGGG+TGG - chr1_1:70971782-70971801 Msa0040690:intron 35.0%
ACAAGCAACATAACATTCGA+TGG + chr1_1:70972035-70972054 None:intergenic 35.0%
GTTGCTAAAATCATGCAGTT+TGG - chr1_1:70972093-70972112 Msa0040690:intron 35.0%
!! AATGTTGGTGGTAAAGTGTT+GGG - chr1_1:70972174-70972193 Msa0040690:CDS 35.0%
!!! GTTTTAGAGAAAAGATGGTG+AGG - chr1_1:70970536-70970555 Msa0040690:three_prime_UTR 35.0%
!! GAAAGCGTCAAGTTATGATT+AGG - chr1_1:70970611-70970630 Msa0040690:CDS 35.0%
TGTGTTTGTAGGATACATTG+GGG - chr1_1:70970789-70970808 Msa0040690:intron 35.0%
TTGAATATGTCGATGATCAC+AGG - chr1_1:70970815-70970834 Msa0040690:intron 35.0%
AATGGTAGATTGAACAAGTG+TGG - chr1_1:70970862-70970881 Msa0040690:intron 35.0%
!! ATTAGTCCTCGTTTTGATGT+TGG - chr1_1:70970889-70970908 Msa0040690:intron 35.0%
TCCCACAAAACTTATGTCAA+TGG + chr1_1:70971110-70971129 None:intergenic 35.0%
!! ATAAGTTTTGTGGGACTGTT+TGG - chr1_1:70971115-70971134 Msa0040690:intron 35.0%
TATAGTTCCTAACTATCGTG+TGG - chr1_1:70971293-70971312 Msa0040690:intron 35.0%
!! GCCTAATATAAAGGTATTCC+AGG + chr1_1:70971450-70971469 None:intergenic 35.0%
GCCTATTAGGCCTAATATAA+AGG + chr1_1:70971459-70971478 None:intergenic 35.0%
!!! TAGGCTTTTAAAACTTGGGT+TGG - chr1_1:70971474-70971493 Msa0040690:intron 35.0%
!! TAAAACTTGGGTTGGTTAGT+AGG - chr1_1:70971482-70971501 Msa0040690:intron 35.0%
! TAGGCTTTTAAATCTTGGGT+TGG - chr1_1:70971501-70971520 Msa0040690:intron 35.0%
CTTAAGTGAGTGAAACATCT+GGG + chr1_1:70971613-70971632 None:intergenic 35.0%
CAGATGTTTCACTCACTTAA+GGG - chr1_1:70971612-70971631 Msa0040690:intron 35.0%
TTCAAACCGTTCTTTATGGT+TGG - chr1_1:70971692-70971711 Msa0040690:intron 35.0%
TCAAACCGTTCTTTATGGTT+GGG - chr1_1:70971693-70971712 Msa0040690:intron 35.0%
ATACACCCAACCATAAAGAA+CGG + chr1_1:70971701-70971720 None:intergenic 35.0%
CTTATTATGCTTTAATGGGG+TGG - chr1_1:70971782-70971801 Msa0040690:intron 35.0%
ACAAGCAACATAACATTCGA+TGG + chr1_1:70972035-70972054 None:intergenic 35.0%
GTTGCTAAAATCATGCAGTT+TGG - chr1_1:70972093-70972112 Msa0040690:intron 35.0%
!! AATGTTGGTGGTAAAGTGTT+GGG - chr1_1:70972174-70972193 Msa0040690:CDS 35.0%
TTAGGGTTGGAGAAGAAGAA+CGG + chr1_1:70970359-70970378 None:intergenic 40.0%
AGCAGCTTACACAATTTCTC+TGG - chr1_1:70970410-70970429 Msa0040690:intron 40.0%
ATGTACAATGCTGAGAAACG+TGG - chr1_1:70970589-70970608 Msa0040690:exon 40.0%
! CATGCTTTTGCATGACCATA+AGG + chr1_1:70970663-70970682 None:intergenic 40.0%
CTTATGGTCATGCAAAAGCA+TGG - chr1_1:70970661-70970680 Msa0040690:CDS 40.0%
! TCATGCAAAAGCATGGTATG+TGG - chr1_1:70970668-70970687 Msa0040690:CDS 40.0%
!! GTAGGATTAGGCTTTGTTAC+TGG - chr1_1:70970721-70970740 Msa0040690:intron 40.0%
TTGACACCAACATCAAAACG+AGG + chr1_1:70970898-70970917 None:intergenic 40.0%
!! GTTGGTGTCAAAGAGATTGA+AGG - chr1_1:70970907-70970926 Msa0040690:intron 40.0%
GTGTCAAAGAGATTGAAGGA+TGG - chr1_1:70970911-70970930 Msa0040690:intron 40.0%
!! TTTTAGCTGACCTGTCTTGA+GGG + chr1_1:70970952-70970971 None:intergenic 40.0%
!!! ATTTTAGCTGACCTGTCTTG+AGG + chr1_1:70970953-70970972 None:intergenic 40.0%
ATGATATGTGCTTCTGCTAC+AGG - chr1_1:70971252-70971271 Msa0040690:intron 40.0%
AGAATGACCACACGATAGTT+AGG + chr1_1:70971303-70971322 None:intergenic 40.0%
CCTTAAGTGAGTGAAACATC+TGG + chr1_1:70971614-70971633 None:intergenic 40.0%
CCAGATGTTTCACTCACTTA+AGG - chr1_1:70971611-70971630 Msa0040690:intron 40.0%
CACTCACTTAAGGGACTATT+TGG - chr1_1:70971621-70971640 Msa0040690:intron 40.0%
ATAGTCGGTATGCATAGAGT+GGG + chr1_1:70971734-70971753 None:intergenic 40.0%
AATAGTCGGTATGCATAGAG+TGG + chr1_1:70971735-70971754 None:intergenic 40.0%
GGTGGACGTAGAATATTCAT+TGG - chr1_1:70971800-70971819 Msa0040690:intron 40.0%
CTGAAGTTGCTATCATCATC+TGG - chr1_1:70972005-70972024 Msa0040690:intron 40.0%
TTCTTGTGGTCCCTAACTAT+TGG - chr1_1:70972071-70972090 Msa0040690:intron 40.0%
TGGTATCATGGATCATGAAG+AGG - chr1_1:70972140-70972159 Msa0040690:CDS 40.0%
!! GAATGTTGGTGGTAAAGTGT+TGG - chr1_1:70972173-70972192 Msa0040690:CDS 40.0%
TTAGGGTTGGAGAAGAAGAA+CGG + chr1_1:70970359-70970378 None:intergenic 40.0%
AGCAGCTTACACAATTTCTC+TGG - chr1_1:70970410-70970429 Msa0040690:intron 40.0%
ATGTACAATGCTGAGAAACG+TGG - chr1_1:70970589-70970608 Msa0040690:exon 40.0%
! CATGCTTTTGCATGACCATA+AGG + chr1_1:70970663-70970682 None:intergenic 40.0%
CTTATGGTCATGCAAAAGCA+TGG - chr1_1:70970661-70970680 Msa0040690:CDS 40.0%
! TCATGCAAAAGCATGGTATG+TGG - chr1_1:70970668-70970687 Msa0040690:CDS 40.0%
!! GTAGGATTAGGCTTTGTTAC+TGG - chr1_1:70970721-70970740 Msa0040690:intron 40.0%
TTGACACCAACATCAAAACG+AGG + chr1_1:70970898-70970917 None:intergenic 40.0%
!! GTTGGTGTCAAAGAGATTGA+AGG - chr1_1:70970907-70970926 Msa0040690:intron 40.0%
GTGTCAAAGAGATTGAAGGA+TGG - chr1_1:70970911-70970930 Msa0040690:intron 40.0%
!! TTTTAGCTGACCTGTCTTGA+GGG + chr1_1:70970952-70970971 None:intergenic 40.0%
!!! ATTTTAGCTGACCTGTCTTG+AGG + chr1_1:70970953-70970972 None:intergenic 40.0%
ATGATATGTGCTTCTGCTAC+AGG - chr1_1:70971252-70971271 Msa0040690:intron 40.0%
AGAATGACCACACGATAGTT+AGG + chr1_1:70971303-70971322 None:intergenic 40.0%
CCTTAAGTGAGTGAAACATC+TGG + chr1_1:70971614-70971633 None:intergenic 40.0%
CCAGATGTTTCACTCACTTA+AGG - chr1_1:70971611-70971630 Msa0040690:intron 40.0%
CACTCACTTAAGGGACTATT+TGG - chr1_1:70971621-70971640 Msa0040690:intron 40.0%
ATAGTCGGTATGCATAGAGT+GGG + chr1_1:70971734-70971753 None:intergenic 40.0%
AATAGTCGGTATGCATAGAG+TGG + chr1_1:70971735-70971754 None:intergenic 40.0%
GGTGGACGTAGAATATTCAT+TGG - chr1_1:70971800-70971819 Msa0040690:intron 40.0%
CTGAAGTTGCTATCATCATC+TGG - chr1_1:70972005-70972024 Msa0040690:intron 40.0%
TTCTTGTGGTCCCTAACTAT+TGG - chr1_1:70972071-70972090 Msa0040690:intron 40.0%
TGGTATCATGGATCATGAAG+AGG - chr1_1:70972140-70972159 Msa0040690:CDS 40.0%
!! GAATGTTGGTGGTAAAGTGT+TGG - chr1_1:70972173-70972192 Msa0040690:CDS 40.0%
TTGAGACACTGGCGGAATTA+GGG + chr1_1:70970376-70970395 None:intergenic 45.0%
! GCAAAAGCATGGTATGTGGT+TGG - chr1_1:70970672-70970691 Msa0040690:CDS 45.0%
TATGTCGATGATCACAGGTC+TGG - chr1_1:70970820-70970839 Msa0040690:intron 45.0%
!! AGATTGAAGGATGGACTGCT+AGG - chr1_1:70970920-70970939 Msa0040690:intron 45.0%
TAGTGCACAATATGCGTCTC+TGG - chr1_1:70971054-70971073 Msa0040690:intron 45.0%
AGTGCACAATATGCGTCTCT+GGG - chr1_1:70971055-70971074 Msa0040690:intron 45.0%
TCAAGACTCCAACGTCAATG+TGG + chr1_1:70971334-70971353 None:intergenic 45.0%
!! ATCTTGGGTTGGAATTGGAG+AGG - chr1_1:70971512-70971531 Msa0040690:intron 45.0%
!! TCTTGGGTTGGAATTGGAGA+GGG - chr1_1:70971513-70971532 Msa0040690:intron 45.0%
AGGGGTTAACCAGAACAATC+CGG - chr1_1:70971532-70971551 Msa0040690:intron 45.0%
!! ATAAGTCAGAGAAGCACTGC+CGG + chr1_1:70971554-70971573 None:intergenic 45.0%
ATTGTCTTGACTACCTCTGC+TGG - chr1_1:70972120-70972139 Msa0040690:intron 45.0%
ATGATCCATGATACCAGCAG+AGG + chr1_1:70972136-70972155 None:intergenic 45.0%
ACCACCAACATTCTTTCTCC+TGG + chr1_1:70972166-70972185 None:intergenic 45.0%
TTGAGACACTGGCGGAATTA+GGG + chr1_1:70970376-70970395 None:intergenic 45.0%
! GCAAAAGCATGGTATGTGGT+TGG - chr1_1:70970672-70970691 Msa0040690:CDS 45.0%
TATGTCGATGATCACAGGTC+TGG - chr1_1:70970820-70970839 Msa0040690:intron 45.0%
!! AGATTGAAGGATGGACTGCT+AGG - chr1_1:70970920-70970939 Msa0040690:intron 45.0%
TAGTGCACAATATGCGTCTC+TGG - chr1_1:70971054-70971073 Msa0040690:intron 45.0%
AGTGCACAATATGCGTCTCT+GGG - chr1_1:70971055-70971074 Msa0040690:intron 45.0%
TCAAGACTCCAACGTCAATG+TGG + chr1_1:70971334-70971353 None:intergenic 45.0%
!! ATCTTGGGTTGGAATTGGAG+AGG - chr1_1:70971512-70971531 Msa0040690:intron 45.0%
!! TCTTGGGTTGGAATTGGAGA+GGG - chr1_1:70971513-70971532 Msa0040690:intron 45.0%
AGGGGTTAACCAGAACAATC+CGG - chr1_1:70971532-70971551 Msa0040690:intron 45.0%
!! ATAAGTCAGAGAAGCACTGC+CGG + chr1_1:70971554-70971573 None:intergenic 45.0%
ATTGTCTTGACTACCTCTGC+TGG - chr1_1:70972120-70972139 Msa0040690:intron 45.0%
ATGATCCATGATACCAGCAG+AGG + chr1_1:70972136-70972155 None:intergenic 45.0%
ACCACCAACATTCTTTCTCC+TGG + chr1_1:70972166-70972185 None:intergenic 45.0%
!! TAAATTATAAAAACAATTTA+TGG - chr1_1:70971208-70971227 Msa0040690:intron 5.0%
!! TAAATTATAAAAACAATTTA+TGG - chr1_1:70971208-70971227 Msa0040690:intron 5.0%
! ACGGAGGCCGGGTTTTTATT+CGG + chr1_1:70970340-70970359 None:intergenic 50.0%
GTTGAGACACTGGCGGAATT+AGG + chr1_1:70970377-70970396 None:intergenic 50.0%
TAGGCTTCTTCCCTCAAGAC+AGG - chr1_1:70970939-70970958 Msa0040690:intron 50.0%
TATGCGTCTCTGGGCCTATT+TGG - chr1_1:70971064-70971083 Msa0040690:intron 50.0%
TTTGCGCACCACATTGACGT+TGG - chr1_1:70971323-70971342 Msa0040690:intron 50.0%
!! CTTGGGTTGGAATTGGAGAG+GGG - chr1_1:70971514-70971533 Msa0040690:intron 50.0%
GACTACCTCTGCTGGTATCA+TGG - chr1_1:70972128-70972147 Msa0040690:intron 50.0%
TCATGGATCATGAAGAGGCC+AGG - chr1_1:70972145-70972164 Msa0040690:CDS 50.0%
GAGGCCAGGAGAAAGAATGT+TGG - chr1_1:70972159-70972178 Msa0040690:CDS 50.0%
GCCAGGAGAAAGAATGTTGG+TGG - chr1_1:70972162-70972181 Msa0040690:CDS 50.0%
! ACGGAGGCCGGGTTTTTATT+CGG + chr1_1:70970340-70970359 None:intergenic 50.0%
GTTGAGACACTGGCGGAATT+AGG + chr1_1:70970377-70970396 None:intergenic 50.0%
TAGGCTTCTTCCCTCAAGAC+AGG - chr1_1:70970939-70970958 Msa0040690:intron 50.0%
TATGCGTCTCTGGGCCTATT+TGG - chr1_1:70971064-70971083 Msa0040690:intron 50.0%
TTTGCGCACCACATTGACGT+TGG - chr1_1:70971323-70971342 Msa0040690:intron 50.0%
!! CTTGGGTTGGAATTGGAGAG+GGG - chr1_1:70971514-70971533 Msa0040690:intron 50.0%
GACTACCTCTGCTGGTATCA+TGG - chr1_1:70972128-70972147 Msa0040690:intron 50.0%
TCATGGATCATGAAGAGGCC+AGG - chr1_1:70972145-70972164 Msa0040690:CDS 50.0%
GAGGCCAGGAGAAAGAATGT+TGG - chr1_1:70972159-70972178 Msa0040690:CDS 50.0%
GCCAGGAGAAAGAATGTTGG+TGG - chr1_1:70972162-70972181 Msa0040690:CDS 50.0%
TGGAGAAGAAGAACGGAGGC+CGG + chr1_1:70970352-70970371 None:intergenic 55.0%
GGGTTGGAGAAGAAGAACGG+AGG + chr1_1:70970356-70970375 None:intergenic 55.0%
GACACTGGCGGAATTAGGGT+TGG + chr1_1:70970372-70970391 None:intergenic 55.0%
TCTCTGCGTTGAGACACTGG+CGG + chr1_1:70970384-70970403 None:intergenic 55.0%
CAGTCTCTGCGTTGAGACAC+TGG + chr1_1:70970387-70970406 None:intergenic 55.0%
!! GAAGCACTGCCGGATTGTTC+TGG + chr1_1:70971544-70971563 None:intergenic 55.0%
TGGAGAAGAAGAACGGAGGC+CGG + chr1_1:70970352-70970371 None:intergenic 55.0%
GGGTTGGAGAAGAAGAACGG+AGG + chr1_1:70970356-70970375 None:intergenic 55.0%
GACACTGGCGGAATTAGGGT+TGG + chr1_1:70970372-70970391 None:intergenic 55.0%
TCTCTGCGTTGAGACACTGG+CGG + chr1_1:70970384-70970403 None:intergenic 55.0%
CAGTCTCTGCGTTGAGACAC+TGG + chr1_1:70970387-70970406 None:intergenic 55.0%
!! GAAGCACTGCCGGATTGTTC+TGG + chr1_1:70971544-70971563 None:intergenic 55.0%
GGAGAAGAAGAACGGAGGCC+GGG + chr1_1:70970351-70970370 None:intergenic 60.0%
GGAGAAGAAGAACGGAGGCC+GGG + chr1_1:70970351-70970370 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 70970332 70972479 70970332 ID=Msa0040690;Name=Msa0040690
chr1_1 mRNA 70970332 70972479 70970332 ID=Msa0040690-mRNA-1;Parent=Msa0040690;Name=Msa0040690-mRNA-1;_AED=0.17;_eAED=0.17;_QI=105|1|1|1|0.5|0.2|5|236|130
chr1_1 exon 70970332 70970411 70970332 ID=Msa0040690-mRNA-1:exon:23446;Parent=Msa0040690-mRNA-1
chr1_1 exon 70970446 70970700 70970446 ID=Msa0040690-mRNA-1:exon:23445;Parent=Msa0040690-mRNA-1
chr1_1 exon 70971851 70972011 70971851 ID=Msa0040690-mRNA-1:exon:23444;Parent=Msa0040690-mRNA-1
chr1_1 exon 70972129 70972266 70972129 ID=Msa0040690-mRNA-1:exon:23443;Parent=Msa0040690-mRNA-1
chr1_1 exon 70972380 70972479 70972380 ID=Msa0040690-mRNA-1:exon:23442;Parent=Msa0040690-mRNA-1
chr1_1 five_prime_UTR 70972380 70972479 70972380 ID=Msa0040690-mRNA-1:five_prime_utr;Parent=Msa0040690-mRNA-1
chr1_1 five_prime_UTR 70972262 70972266 70972262 ID=Msa0040690-mRNA-1:five_prime_utr;Parent=Msa0040690-mRNA-1
chr1_1 CDS 70972129 70972261 70972129 ID=Msa0040690-mRNA-1:cds;Parent=Msa0040690-mRNA-1
chr1_1 CDS 70971851 70972011 70971851 ID=Msa0040690-mRNA-1:cds;Parent=Msa0040690-mRNA-1
chr1_1 CDS 70970602 70970700 70970602 ID=Msa0040690-mRNA-1:cds;Parent=Msa0040690-mRNA-1
chr1_1 three_prime_UTR 70970446 70970601 70970446 ID=Msa0040690-mRNA-1:three_prime_utr;Parent=Msa0040690-mRNA-1
chr1_1 three_prime_UTR 70970332 70970411 70970332 ID=Msa0040690-mRNA-1:three_prime_utr;Parent=Msa0040690-mRNA-1
Gene Sequence

>Msa0040690

ATGGTGAGGGTTAGTGTTTTGAACGATGCACTCAAGAGCATGTACAATGCTGAGAAACGTGGAAAGCGTCAAGTTATGATTAGGCCATCCTCAAAAGTGATTATCAAATTCCTTATGGTCATGCAAAAGCATGGATACATTGGGGAGTTTGAATATGTCGATGATCACAGGTCTGGCAAAATTGTCGTCGAATTGAATGGTAGATTGAACAAGTGTGGTGTTATTAGTCCTCGTTTTGATGTTGGTGTCAAAGAGATTGAAGGATGGACTGCTAGGCTTCTTCCCTCAAGACAGTTTGGGTATATTGTCTTGACTACCTCTGCTGGTATCATGGATCATGAAGAGGCCAGGAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTTTTCTATTAG

Protein sequence

>Msa0040690

MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY*