AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0027260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027260 MtrunA17_Chr7g0261941 100.000 140 0 0 1 140 1 140 1.55e-99 281
Msa0027260 MtrunA17_Chr1g0183341 100.000 140 0 0 1 140 1 140 1.55e-99 281
Msa0027260 MtrunA17_Chr1g0157171 81.818 121 8 1 16 136 1 107 5.30e-65 194
Msa0027260 MtrunA17_Chr3g0079201 84.810 79 12 0 62 140 1 79 4.29e-44 139
Msa0027260 MtrunA17_Chr5g0422671 85.075 67 10 0 74 140 2 68 6.45e-37 120
Msa0027260 MtrunA17_Chr3g0092871 87.755 49 6 0 14 62 16 64 3.70e-24 88.6
Msa0027260 MtrunA17_Chr5g0422681 79.592 49 10 0 14 62 16 64 2.68e-20 79.0
Msa0027260 MtrunA17_Chr4g0015931 37.391 115 64 3 26 136 8 118 4.88e-16 69.3
Msa0027260 MtrunA17_CPg0492591 37.391 115 64 3 26 136 8 118 4.88e-16 69.3
Msa0027260 MtrunA17_Chr2g0322131 38.235 102 56 2 26 124 8 105 5.34e-15 67.0
Msa0027260 MtrunA17_Chr4g0017131 37.500 88 48 2 26 110 8 91 1.10e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027260 AT2G33370.1 97.143 140 4 0 1 140 1 140 2.43e-97 276
Msa0027260 AT1G04480.1 97.143 140 4 0 1 140 1 140 2.43e-97 276
Msa0027260 AT3G04400.1 97.143 140 4 0 1 140 1 140 2.43e-97 276
Msa0027260 AT2G33370.2 98.400 125 2 0 16 140 1 125 1.23e-86 248
Msa0027260 AT3G04400.2 98.400 125 2 0 16 140 1 125 1.23e-86 248
Msa0027260 ATCG00780.1 34.783 115 67 3 26 136 8 118 1.26e-14 66.2

Find 69 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTATGTTTAAGTATCTTT+TGG 0.240559 1_1:+51522751 Msa0027260:three_prime_UTR
GGATTTAGAAGATGATTAAT+TGG 0.294499 1_1:+51522791 Msa0027260:three_prime_UTR
CTAAGGAATGTGCTGATCTT+TGG 0.329007 1_1:+51522542 Msa0027260:CDS
ATATATGCAAAATGAAGATT+AGG 0.345485 1_1:-51520964 None:intergenic
ATACCTTTCATTTCTCCCTT+AGG 0.387558 1_1:-51522185 None:intergenic
TATATGCAAAATGAAGATTA+GGG 0.389919 1_1:-51520963 None:intergenic
TAAGTCAAGGAAAGACAAAA+TGG 0.393748 1_1:-51522733 None:intergenic
ACAAAATGGTGACAAAGTTT+AGG 0.399734 1_1:-51522719 None:intergenic
CCTACCCTTGATTCCCTTCA+CGG 0.405364 1_1:-51521238 None:intergenic
TCAGCACATTCCTTAGCAAT+TGG 0.405879 1_1:-51522535 None:intergenic
GAACAAGTTCCGTATGTCAC+TGG 0.413902 1_1:+51521149 Msa0027260:CDS
ACATGAAGACACCGTCCTTT+CGG 0.413999 1_1:-51521383 None:intergenic
TTAGAAGATGATTAATTGGT+TGG 0.414162 1_1:+51522795 Msa0027260:three_prime_UTR
AAAACCTTCTTCCTGAGATC+AGG 0.427356 1_1:-51521324 None:intergenic
CGTCTTCCTTCAGCTTGTGC+TGG 0.450748 1_1:+51521267 Msa0027260:CDS
AAAACATGGATGAACGAACT+TGG 0.457890 1_1:-51522885 None:intergenic
ATAATAGCTAGAGTAGTGTT+AGG 0.462909 1_1:-51522831 None:intergenic
TTAGGTCGTGGTGGTTCCGC+GGG 0.471837 1_1:+51521126 Msa0027260:intron
ATTGTCAATAAAATGATGTA+AGG 0.472153 1_1:+51520884 Msa0027260:five_prime_UTR
CATATCCGTGAAGGGAATCA+AGG 0.482700 1_1:+51521233 Msa0027260:CDS
TTCAGCTTGTGCTGGTGACA+TGG 0.489849 1_1:+51521275 Msa0027260:CDS
TTGGCAGCACTTGCAATCCT+AGG 0.493302 1_1:-51522565 None:intergenic
GGTGTCTTCATGTACTTTGA+AGG 0.499615 1_1:+51521393 Msa0027260:CDS
CGCTGACGAACGATGACAGC+TGG 0.521156 1_1:-51521348 None:intergenic
AGAAGGGAAAGCCTGATCTC+AGG 0.525390 1_1:+51521313 Msa0027260:CDS
TTGGATATATGATATTTGGT+TGG 0.526269 1_1:+51522770 Msa0027260:three_prime_UTR
CAGTTCACCGTCGCCGCCAC+TGG 0.528733 1_1:-51521177 None:intergenic
TTGTGCTGGTGACATGGTGA+TGG 0.531038 1_1:+51521281 Msa0027260:CDS
AATGTGCTGATCTTTGGCCT+AGG 0.543147 1_1:+51522548 Msa0027260:CDS
ACACCGTCCTTTCGGCGCCA+TGG 0.546165 1_1:-51521375 None:intergenic
ATTGTAGGTTCTGCTATCAC+CGG 0.549900 1_1:+51522511 Msa0027260:intron
AACAAGTTCCGTATGTCACT+GGG 0.554811 1_1:+51521150 Msa0027260:CDS
GGTGATGGCTACTGTGAAGA+AGG 0.561037 1_1:+51521296 Msa0027260:CDS
CAGAATCCACACTCATACAA+TGG 0.562785 1_1:-51522590 None:intergenic
GATGTACAGATTCTTTGCTC+CGG 0.563000 1_1:-51521211 None:intergenic
ATTAGGTCGTGGTGGTTCCG+CGG 0.570592 1_1:+51521125 Msa0027260:intron
CTGGTAGACCCAGTGACATA+CGG 0.574663 1_1:-51521158 None:intergenic
AAGCCATGGCGCCGAAAGGA+CGG 0.575094 1_1:+51521372 Msa0027260:CDS
GGGTCTACCAGTGGCGGCGA+CGG 0.576990 1_1:+51521170 Msa0027260:CDS
AAAGCCTGATCTCAGGAAGA+AGG 0.579578 1_1:+51521320 Msa0027260:CDS
TGGTGTCATTGTGAATCCTA+AGG 0.581900 1_1:+51522169 Msa0027260:CDS
CCACACTCATACAATGGCAT+TGG 0.586391 1_1:-51522584 None:intergenic
TCTGTACATCATATCCGTGA+AGG 0.586813 1_1:+51521224 Msa0027260:CDS
ACATTCCTTAGCAATTGGAC+CGG 0.593816 1_1:-51522530 None:intergenic
AATCCTAAGGGAGAAATGAA+AGG 0.599885 1_1:+51522182 Msa0027260:CDS
TCGTTCGTCAGCGTAAGCCA+TGG 0.601755 1_1:+51521358 Msa0027260:CDS
GCGTAAGCCATGGCGCCGAA+AGG 0.602704 1_1:+51521368 Msa0027260:CDS
AAATTAAAATTGCCACACAA+TGG 0.602941 1_1:-51522639 None:intergenic
TATCACCGGTCCAATTGCTA+AGG 0.605693 1_1:+51522525 Msa0027260:CDS
CTGTACATCATATCCGTGAA+GGG 0.613193 1_1:+51521225 Msa0027260:CDS
CGCAAGAGCAACATGAGCGG+TGG 0.614529 1_1:+51520994 Msa0027260:five_prime_UTR
CAGACTCTAGAGACAAAACA+TGG 0.615875 1_1:-51522899 None:intergenic
ATGTCACCAGCACAAGCTGA+AGG 0.618315 1_1:-51521273 None:intergenic
CCAATGCCATTGTATGAGTG+TGG 0.622710 1_1:+51522584 Msa0027260:exon
ATATCCGTGAAGGGAATCAA+GGG 0.625374 1_1:+51521234 Msa0027260:CDS
AAATTGCCACACAATGGCAT+CGG 0.633026 1_1:-51522633 None:intergenic
AGATACTTAAACATAAGTCA+AGG 0.633906 1_1:-51522746 None:intergenic
AACGCAACCATGTCGAAGAG+AGG 0.636545 1_1:+51521025 Msa0027260:exon
GTCACTGGGTCTACCAGTGG+CGG 0.643029 1_1:+51521164 Msa0027260:CDS
CCGTGAAGGGAATCAAGGGT+AGG 0.651559 1_1:+51521238 Msa0027260:CDS
GGTGTCATTGTGAATCCTAA+GGG 0.659767 1_1:+51522170 Msa0027260:CDS
TATGTCACTGGGTCTACCAG+TGG 0.664327 1_1:+51521161 Msa0027260:CDS
GTGATGGCTACTGTGAAGAA+GGG 0.669945 1_1:+51521297 Msa0027260:CDS
GTACATACCTCTCTTCGACA+TGG 0.681454 1_1:-51521032 None:intergenic
AAACGCAAGAGCAACATGAG+CGG 0.699274 1_1:+51520991 Msa0027260:five_prime_UTR
GTGAACTGTGCTGATAACAC+CGG 0.699857 1_1:+51521192 Msa0027260:CDS
TAGGTCGTGGTGGTTCCGCG+GGG 0.708397 1_1:+51521127 Msa0027260:intron
GTAGTGCCGATGCCATTGTG+TGG 0.730120 1_1:+51522627 Msa0027260:three_prime_UTR
CATACGGAACTTGTTCCCCG+CGG 0.790506 1_1:-51521142 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAACAAAAATCAATTTCA+AGG - chr1_1:51521659-51521678 None:intergenic 15.0%
!!! AAACTTATCTTTATGTTTTT+AGG + chr1_1:51522673-51522692 Msa0027260:three_prime_UTR 15.0%
!! TTTAACAAAAATCAATTTCA+AGG - chr1_1:51521659-51521678 None:intergenic 15.0%
!!! AAACTTATCTTTATGTTTTT+AGG + chr1_1:51522673-51522692 Msa0027260:three_prime_UTR 15.0%
!! ATTGTCAATAAAATGATGTA+AGG + chr1_1:51520884-51520903 Msa0027260:five_prime_UTR 20.0%
!!! TTTCTATAGCTTATTTTCTT+GGG - chr1_1:51520910-51520929 None:intergenic 20.0%
!! TATATGCAAAATGAAGATTA+GGG - chr1_1:51520966-51520985 None:intergenic 20.0%
!! ATATATGCAAAATGAAGATT+AGG - chr1_1:51520967-51520986 None:intergenic 20.0%
!! ATAATTGATTATGACATGTT+TGG - chr1_1:51521828-51521847 None:intergenic 20.0%
!!! TACACTTTTAGAATCAAATT+TGG + chr1_1:51521847-51521866 Msa0027260:intron 20.0%
!! TTGATTCTAACACTTAAATT+TGG + chr1_1:51521919-51521938 Msa0027260:intron 20.0%
!! ATATCAATTCAATCATTGTA+CGG + chr1_1:51522019-51522038 Msa0027260:intron 20.0%
!!! TTTTAATTATGTCTTAATGC+TGG + chr1_1:51522103-51522122 Msa0027260:intron 20.0%
!! AGTAAATACAGTAAATACTT+AGG + chr1_1:51522236-51522255 Msa0027260:intron 20.0%
!! AATGAATCAATTAGACAAAA+CGG - chr1_1:51522448-51522467 None:intergenic 20.0%
!!! ACTTATGTTTAAGTATCTTT+TGG + chr1_1:51522751-51522770 Msa0027260:three_prime_UTR 20.0%
!!! TCTTTTGGATATATGATATT+TGG + chr1_1:51522766-51522785 Msa0027260:three_prime_UTR 20.0%
!! ATTGTCAATAAAATGATGTA+AGG + chr1_1:51520884-51520903 Msa0027260:five_prime_UTR 20.0%
!!! TTTCTATAGCTTATTTTCTT+GGG - chr1_1:51520910-51520929 None:intergenic 20.0%
!! TATATGCAAAATGAAGATTA+GGG - chr1_1:51520966-51520985 None:intergenic 20.0%
!! ATATATGCAAAATGAAGATT+AGG - chr1_1:51520967-51520986 None:intergenic 20.0%
!! ATAATTGATTATGACATGTT+TGG - chr1_1:51521828-51521847 None:intergenic 20.0%
!!! TACACTTTTAGAATCAAATT+TGG + chr1_1:51521847-51521866 Msa0027260:intron 20.0%
!! TTGATTCTAACACTTAAATT+TGG + chr1_1:51521919-51521938 Msa0027260:intron 20.0%
!! ATATCAATTCAATCATTGTA+CGG + chr1_1:51522019-51522038 Msa0027260:intron 20.0%
!!! TTTTAATTATGTCTTAATGC+TGG + chr1_1:51522103-51522122 Msa0027260:intron 20.0%
!! AGTAAATACAGTAAATACTT+AGG + chr1_1:51522236-51522255 Msa0027260:intron 20.0%
!! AATGAATCAATTAGACAAAA+CGG - chr1_1:51522448-51522467 None:intergenic 20.0%
!!! ACTTATGTTTAAGTATCTTT+TGG + chr1_1:51522751-51522770 Msa0027260:three_prime_UTR 20.0%
!!! TCTTTTGGATATATGATATT+TGG + chr1_1:51522766-51522785 Msa0027260:three_prime_UTR 20.0%
!!! CTTTCTATAGCTTATTTTCT+TGG - chr1_1:51520911-51520930 None:intergenic 25.0%
!!! TTCAGTTTTAGGGTTTATTT+GGG - chr1_1:51520939-51520958 None:intergenic 25.0%
!!! TTTCAGTTTTAGGGTTTATT+TGG - chr1_1:51520940-51520959 None:intergenic 25.0%
!!! TTAGGGTTTTTTCAGTTTTA+GGG - chr1_1:51520949-51520968 None:intergenic 25.0%
!!! ATTAGGGTTTTTTCAGTTTT+AGG - chr1_1:51520950-51520969 None:intergenic 25.0%
! AAGCAACATTTCAAAATCAA+AGG - chr1_1:51521449-51521468 None:intergenic 25.0%
!! CTATTTATTGGAAGTTTTTG+AGG + chr1_1:51521890-51521909 Msa0027260:intron 25.0%
! GATTGAATTGATATTAAGAG+AGG - chr1_1:51522013-51522032 None:intergenic 25.0%
! CTCTTGTTAATATTTGGTAT+TGG + chr1_1:51522130-51522149 Msa0027260:intron 25.0%
! TTGTGAAAAAATAACACAGA+AGG - chr1_1:51522369-51522388 None:intergenic 25.0%
! AAATTAAAATTGCCACACAA+TGG - chr1_1:51522642-51522661 None:intergenic 25.0%
! AGATACTTAAACATAAGTCA+AGG - chr1_1:51522749-51522768 None:intergenic 25.0%
! TTGGATATATGATATTTGGT+TGG + chr1_1:51522770-51522789 Msa0027260:three_prime_UTR 25.0%
! GGATTTAGAAGATGATTAAT+TGG + chr1_1:51522791-51522810 Msa0027260:three_prime_UTR 25.0%
! TTAGAAGATGATTAATTGGT+TGG + chr1_1:51522795-51522814 Msa0027260:three_prime_UTR 25.0%
!!! CTTTCTATAGCTTATTTTCT+TGG - chr1_1:51520911-51520930 None:intergenic 25.0%
!!! TTCAGTTTTAGGGTTTATTT+GGG - chr1_1:51520939-51520958 None:intergenic 25.0%
!!! TTTCAGTTTTAGGGTTTATT+TGG - chr1_1:51520940-51520959 None:intergenic 25.0%
!!! TTAGGGTTTTTTCAGTTTTA+GGG - chr1_1:51520949-51520968 None:intergenic 25.0%
!!! ATTAGGGTTTTTTCAGTTTT+AGG - chr1_1:51520950-51520969 None:intergenic 25.0%
! AAGCAACATTTCAAAATCAA+AGG - chr1_1:51521449-51521468 None:intergenic 25.0%
!! CTATTTATTGGAAGTTTTTG+AGG + chr1_1:51521890-51521909 Msa0027260:intron 25.0%
! GATTGAATTGATATTAAGAG+AGG - chr1_1:51522013-51522032 None:intergenic 25.0%
! CTCTTGTTAATATTTGGTAT+TGG + chr1_1:51522130-51522149 Msa0027260:intron 25.0%
! TTGTGAAAAAATAACACAGA+AGG - chr1_1:51522369-51522388 None:intergenic 25.0%
! AAATTAAAATTGCCACACAA+TGG - chr1_1:51522642-51522661 None:intergenic 25.0%
! AGATACTTAAACATAAGTCA+AGG - chr1_1:51522749-51522768 None:intergenic 25.0%
! TTGGATATATGATATTTGGT+TGG + chr1_1:51522770-51522789 Msa0027260:three_prime_UTR 25.0%
! GGATTTAGAAGATGATTAAT+TGG + chr1_1:51522791-51522810 Msa0027260:three_prime_UTR 25.0%
! TTAGAAGATGATTAATTGGT+TGG + chr1_1:51522795-51522814 Msa0027260:three_prime_UTR 25.0%
!!! TTTTAGGGTTTATTTGGGTT+GGG - chr1_1:51520934-51520953 None:intergenic 30.0%
AGAACAATTGAATCTGAGAA+AGG - chr1_1:51521076-51521095 None:intergenic 30.0%
! TGTATCCCTATTTTCTGATT+AGG + chr1_1:51521108-51521127 Msa0027260:intron 30.0%
CATTTCAAAATCAAAGGAAC+AGG - chr1_1:51521443-51521462 None:intergenic 30.0%
!!! TACATTTTAGAATCAAGAGC+AGG + chr1_1:51521761-51521780 Msa0027260:intron 30.0%
GGTAACTTGAAGCTATTTAT+TGG + chr1_1:51521878-51521897 Msa0027260:intron 30.0%
GGTGTACTCTTGTTAATATT+TGG + chr1_1:51522124-51522143 Msa0027260:intron 30.0%
AACATATTTGCATGAGCATT+AGG - chr1_1:51522263-51522282 None:intergenic 30.0%
ACATTGTAACAATAGCCAAA+AGG - chr1_1:51522340-51522359 None:intergenic 30.0%
!! TTTTGGCTATTGTTACAATG+TGG + chr1_1:51522339-51522358 Msa0027260:intron 30.0%
TAGCAAACTAACAAAAAGAC+AGG - chr1_1:51522410-51522429 None:intergenic 30.0%
! TTGTCTAATTGATTCATTGC+TGG + chr1_1:51522450-51522469 Msa0027260:intron 30.0%
ACAAAATGGTGACAAAGTTT+AGG - chr1_1:51522722-51522741 None:intergenic 30.0%
TAAGTCAAGGAAAGACAAAA+TGG - chr1_1:51522736-51522755 None:intergenic 30.0%
ATAATAGCTAGAGTAGTGTT+AGG - chr1_1:51522834-51522853 None:intergenic 30.0%
!!! TTTTAGGGTTTATTTGGGTT+GGG - chr1_1:51520934-51520953 None:intergenic 30.0%
AGAACAATTGAATCTGAGAA+AGG - chr1_1:51521076-51521095 None:intergenic 30.0%
! TGTATCCCTATTTTCTGATT+AGG + chr1_1:51521108-51521127 Msa0027260:intron 30.0%
CATTTCAAAATCAAAGGAAC+AGG - chr1_1:51521443-51521462 None:intergenic 30.0%
!!! TACATTTTAGAATCAAGAGC+AGG + chr1_1:51521761-51521780 Msa0027260:intron 30.0%
GGTAACTTGAAGCTATTTAT+TGG + chr1_1:51521878-51521897 Msa0027260:intron 30.0%
GGTGTACTCTTGTTAATATT+TGG + chr1_1:51522124-51522143 Msa0027260:intron 30.0%
AACATATTTGCATGAGCATT+AGG - chr1_1:51522263-51522282 None:intergenic 30.0%
ACATTGTAACAATAGCCAAA+AGG - chr1_1:51522340-51522359 None:intergenic 30.0%
!! TTTTGGCTATTGTTACAATG+TGG + chr1_1:51522339-51522358 Msa0027260:intron 30.0%
TAGCAAACTAACAAAAAGAC+AGG - chr1_1:51522410-51522429 None:intergenic 30.0%
! TTGTCTAATTGATTCATTGC+TGG + chr1_1:51522450-51522469 Msa0027260:intron 30.0%
ACAAAATGGTGACAAAGTTT+AGG - chr1_1:51522722-51522741 None:intergenic 30.0%
TAAGTCAAGGAAAGACAAAA+TGG - chr1_1:51522736-51522755 None:intergenic 30.0%
ATAATAGCTAGAGTAGTGTT+AGG - chr1_1:51522834-51522853 None:intergenic 30.0%
!!! GTTTTAGGGTTTATTTGGGT+TGG - chr1_1:51520935-51520954 None:intergenic 35.0%
CACGACCTAATCAGAAAATA+GGG - chr1_1:51521116-51521135 None:intergenic 35.0%
! TTCTGATTGGTCATTCGTAA+TGG + chr1_1:51521501-51521520 Msa0027260:intron 35.0%
AGAATCAAATTTGGTTGCTC+TGG + chr1_1:51521856-51521875 Msa0027260:intron 35.0%
GAATCAAATTTGGTTGCTCT+GGG + chr1_1:51521857-51521876 Msa0027260:intron 35.0%
!! TTGGTTTTTGCAGATAATGC+TGG + chr1_1:51522149-51522168 Msa0027260:intron 35.0%
AATCCTAAGGGAGAAATGAA+AGG + chr1_1:51522182-51522201 Msa0027260:CDS 35.0%
ATACCTTTCATTTCTCCCTT+AGG - chr1_1:51522188-51522207 None:intergenic 35.0%
CAAACTAACAAAAAGACAGG+TGG - chr1_1:51522407-51522426 None:intergenic 35.0%
TATGTCATGCTGTTCATTGT+AGG + chr1_1:51522496-51522515 Msa0027260:intron 35.0%
AAAACATGGATGAACGAACT+TGG - chr1_1:51522888-51522907 None:intergenic 35.0%
!!! GTTTTAGGGTTTATTTGGGT+TGG - chr1_1:51520935-51520954 None:intergenic 35.0%
CACGACCTAATCAGAAAATA+GGG - chr1_1:51521116-51521135 None:intergenic 35.0%
! TTCTGATTGGTCATTCGTAA+TGG + chr1_1:51521501-51521520 Msa0027260:intron 35.0%
AGAATCAAATTTGGTTGCTC+TGG + chr1_1:51521856-51521875 Msa0027260:intron 35.0%
GAATCAAATTTGGTTGCTCT+GGG + chr1_1:51521857-51521876 Msa0027260:intron 35.0%
!! TTGGTTTTTGCAGATAATGC+TGG + chr1_1:51522149-51522168 Msa0027260:intron 35.0%
AATCCTAAGGGAGAAATGAA+AGG + chr1_1:51522182-51522201 Msa0027260:CDS 35.0%
ATACCTTTCATTTCTCCCTT+AGG - chr1_1:51522188-51522207 None:intergenic 35.0%
CAAACTAACAAAAAGACAGG+TGG - chr1_1:51522407-51522426 None:intergenic 35.0%
TATGTCATGCTGTTCATTGT+AGG + chr1_1:51522496-51522515 Msa0027260:intron 35.0%
AAAACATGGATGAACGAACT+TGG - chr1_1:51522888-51522907 None:intergenic 35.0%
CCACGACCTAATCAGAAAAT+AGG - chr1_1:51521117-51521136 None:intergenic 40.0%
! CCTATTTTCTGATTAGGTCG+TGG + chr1_1:51521114-51521133 Msa0027260:intron 40.0%
! ATTTTCTGATTAGGTCGTGG+TGG + chr1_1:51521117-51521136 Msa0027260:intron 40.0%
AACAAGTTCCGTATGTCACT+GGG + chr1_1:51521150-51521169 Msa0027260:CDS 40.0%
GATGTACAGATTCTTTGCTC+CGG - chr1_1:51521214-51521233 None:intergenic 40.0%
TCTGTACATCATATCCGTGA+AGG + chr1_1:51521224-51521243 Msa0027260:CDS 40.0%
CTGTACATCATATCCGTGAA+GGG + chr1_1:51521225-51521244 Msa0027260:CDS 40.0%
ATATCCGTGAAGGGAATCAA+GGG + chr1_1:51521234-51521253 Msa0027260:CDS 40.0%
AAAACCTTCTTCCTGAGATC+AGG - chr1_1:51521327-51521346 None:intergenic 40.0%
GGTGTCTTCATGTACTTTGA+AGG + chr1_1:51521393-51521412 Msa0027260:CDS 40.0%
TGAGTGATCTGTGTTCTGAT+TGG + chr1_1:51521488-51521507 Msa0027260:intron 40.0%
! CACATCATGCTGTTTAAGAC+TGG - chr1_1:51521550-51521569 None:intergenic 40.0%
TATGACATGTTTGGTTGCTC+TGG - chr1_1:51521819-51521838 None:intergenic 40.0%
!! TGGTGTCATTGTGAATCCTA+AGG + chr1_1:51522169-51522188 Msa0027260:CDS 40.0%
!! GGTGTCATTGTGAATCCTAA+GGG + chr1_1:51522170-51522189 Msa0027260:CDS 40.0%
ATTGTAGGTTCTGCTATCAC+CGG + chr1_1:51522511-51522530 Msa0027260:intron 40.0%
ACATTCCTTAGCAATTGGAC+CGG - chr1_1:51522533-51522552 None:intergenic 40.0%
TCAGCACATTCCTTAGCAAT+TGG - chr1_1:51522538-51522557 None:intergenic 40.0%
! CTAAGGAATGTGCTGATCTT+TGG + chr1_1:51522542-51522561 Msa0027260:CDS 40.0%
CAGAATCCACACTCATACAA+TGG - chr1_1:51522593-51522612 None:intergenic 40.0%
AAATTGCCACACAATGGCAT+CGG - chr1_1:51522636-51522655 None:intergenic 40.0%
! CAGACTCTAGAGACAAAACA+TGG - chr1_1:51522902-51522921 None:intergenic 40.0%
!!! CATGTTTTGTCTCTAGAGTC+TGG + chr1_1:51522900-51522919 Msa0027260:three_prime_UTR 40.0%
CCACGACCTAATCAGAAAAT+AGG - chr1_1:51521117-51521136 None:intergenic 40.0%
! CCTATTTTCTGATTAGGTCG+TGG + chr1_1:51521114-51521133 Msa0027260:intron 40.0%
! ATTTTCTGATTAGGTCGTGG+TGG + chr1_1:51521117-51521136 Msa0027260:intron 40.0%
AACAAGTTCCGTATGTCACT+GGG + chr1_1:51521150-51521169 Msa0027260:CDS 40.0%
GATGTACAGATTCTTTGCTC+CGG - chr1_1:51521214-51521233 None:intergenic 40.0%
TCTGTACATCATATCCGTGA+AGG + chr1_1:51521224-51521243 Msa0027260:CDS 40.0%
CTGTACATCATATCCGTGAA+GGG + chr1_1:51521225-51521244 Msa0027260:CDS 40.0%
ATATCCGTGAAGGGAATCAA+GGG + chr1_1:51521234-51521253 Msa0027260:CDS 40.0%
AAAACCTTCTTCCTGAGATC+AGG - chr1_1:51521327-51521346 None:intergenic 40.0%
GGTGTCTTCATGTACTTTGA+AGG + chr1_1:51521393-51521412 Msa0027260:CDS 40.0%
TGAGTGATCTGTGTTCTGAT+TGG + chr1_1:51521488-51521507 Msa0027260:intron 40.0%
! CACATCATGCTGTTTAAGAC+TGG - chr1_1:51521550-51521569 None:intergenic 40.0%
TATGACATGTTTGGTTGCTC+TGG - chr1_1:51521819-51521838 None:intergenic 40.0%
!! TGGTGTCATTGTGAATCCTA+AGG + chr1_1:51522169-51522188 Msa0027260:CDS 40.0%
!! GGTGTCATTGTGAATCCTAA+GGG + chr1_1:51522170-51522189 Msa0027260:CDS 40.0%
ATTGTAGGTTCTGCTATCAC+CGG + chr1_1:51522511-51522530 Msa0027260:intron 40.0%
ACATTCCTTAGCAATTGGAC+CGG - chr1_1:51522533-51522552 None:intergenic 40.0%
TCAGCACATTCCTTAGCAAT+TGG - chr1_1:51522538-51522557 None:intergenic 40.0%
! CTAAGGAATGTGCTGATCTT+TGG + chr1_1:51522542-51522561 Msa0027260:CDS 40.0%
CAGAATCCACACTCATACAA+TGG - chr1_1:51522593-51522612 None:intergenic 40.0%
AAATTGCCACACAATGGCAT+CGG - chr1_1:51522636-51522655 None:intergenic 40.0%
! CAGACTCTAGAGACAAAACA+TGG - chr1_1:51522902-51522921 None:intergenic 40.0%
!!! CATGTTTTGTCTCTAGAGTC+TGG + chr1_1:51522900-51522919 Msa0027260:three_prime_UTR 40.0%
AAACGCAAGAGCAACATGAG+CGG + chr1_1:51520991-51521010 Msa0027260:five_prime_UTR 45.0%
GTACATACCTCTCTTCGACA+TGG - chr1_1:51521035-51521054 None:intergenic 45.0%
GAACAAGTTCCGTATGTCAC+TGG + chr1_1:51521149-51521168 Msa0027260:CDS 45.0%
! GTGAACTGTGCTGATAACAC+CGG + chr1_1:51521192-51521211 Msa0027260:CDS 45.0%
CATATCCGTGAAGGGAATCA+AGG + chr1_1:51521233-51521252 Msa0027260:CDS 45.0%
GTGATGGCTACTGTGAAGAA+GGG + chr1_1:51521297-51521316 Msa0027260:CDS 45.0%
AAAGCCTGATCTCAGGAAGA+AGG + chr1_1:51521320-51521339 Msa0027260:CDS 45.0%
ACATGAAGACACCGTCCTTT+CGG - chr1_1:51521386-51521405 None:intergenic 45.0%
AACGAGATTTACCAGCAGAC+AGG - chr1_1:51521594-51521613 None:intergenic 45.0%
! ACACTTGCTTCAGTGCCTTT+TGG + chr1_1:51522322-51522341 Msa0027260:intron 45.0%
TATCACCGGTCCAATTGCTA+AGG + chr1_1:51522525-51522544 Msa0027260:CDS 45.0%
! AATGTGCTGATCTTTGGCCT+AGG + chr1_1:51522548-51522567 Msa0027260:CDS 45.0%
CCACACTCATACAATGGCAT+TGG - chr1_1:51522587-51522606 None:intergenic 45.0%
CCAATGCCATTGTATGAGTG+TGG + chr1_1:51522584-51522603 Msa0027260:exon 45.0%
AAACGCAAGAGCAACATGAG+CGG + chr1_1:51520991-51521010 Msa0027260:five_prime_UTR 45.0%
GTACATACCTCTCTTCGACA+TGG - chr1_1:51521035-51521054 None:intergenic 45.0%
GAACAAGTTCCGTATGTCAC+TGG + chr1_1:51521149-51521168 Msa0027260:CDS 45.0%
! GTGAACTGTGCTGATAACAC+CGG + chr1_1:51521192-51521211 Msa0027260:CDS 45.0%
CATATCCGTGAAGGGAATCA+AGG + chr1_1:51521233-51521252 Msa0027260:CDS 45.0%
GTGATGGCTACTGTGAAGAA+GGG + chr1_1:51521297-51521316 Msa0027260:CDS 45.0%
AAAGCCTGATCTCAGGAAGA+AGG + chr1_1:51521320-51521339 Msa0027260:CDS 45.0%
ACATGAAGACACCGTCCTTT+CGG - chr1_1:51521386-51521405 None:intergenic 45.0%
AACGAGATTTACCAGCAGAC+AGG - chr1_1:51521594-51521613 None:intergenic 45.0%
! ACACTTGCTTCAGTGCCTTT+TGG + chr1_1:51522322-51522341 Msa0027260:intron 45.0%
TATCACCGGTCCAATTGCTA+AGG + chr1_1:51522525-51522544 Msa0027260:CDS 45.0%
! AATGTGCTGATCTTTGGCCT+AGG + chr1_1:51522548-51522567 Msa0027260:CDS 45.0%
CCACACTCATACAATGGCAT+TGG - chr1_1:51522587-51522606 None:intergenic 45.0%
CCAATGCCATTGTATGAGTG+TGG + chr1_1:51522584-51522603 Msa0027260:exon 45.0%
AACGCAACCATGTCGAAGAG+AGG + chr1_1:51521025-51521044 Msa0027260:exon 50.0%
CTGGTAGACCCAGTGACATA+CGG - chr1_1:51521161-51521180 None:intergenic 50.0%
TATGTCACTGGGTCTACCAG+TGG + chr1_1:51521161-51521180 Msa0027260:CDS 50.0%
CCTACCCTTGATTCCCTTCA+CGG - chr1_1:51521241-51521260 None:intergenic 50.0%
ATGTCACCAGCACAAGCTGA+AGG - chr1_1:51521276-51521295 None:intergenic 50.0%
! TTCAGCTTGTGCTGGTGACA+TGG + chr1_1:51521275-51521294 Msa0027260:CDS 50.0%
! TTGTGCTGGTGACATGGTGA+TGG + chr1_1:51521281-51521300 Msa0027260:CDS 50.0%
! GGTGATGGCTACTGTGAAGA+AGG + chr1_1:51521296-51521315 Msa0027260:CDS 50.0%
AGAAGGGAAAGCCTGATCTC+AGG + chr1_1:51521313-51521332 Msa0027260:CDS 50.0%
TCATTGTGCTACCTGTCTGC+TGG + chr1_1:51521580-51521599 Msa0027260:intron 50.0%
TTGGCAGCACTTGCAATCCT+AGG - chr1_1:51522568-51522587 None:intergenic 50.0%
AACGCAACCATGTCGAAGAG+AGG + chr1_1:51521025-51521044 Msa0027260:exon 50.0%
CTGGTAGACCCAGTGACATA+CGG - chr1_1:51521161-51521180 None:intergenic 50.0%
TATGTCACTGGGTCTACCAG+TGG + chr1_1:51521161-51521180 Msa0027260:CDS 50.0%
CCTACCCTTGATTCCCTTCA+CGG - chr1_1:51521241-51521260 None:intergenic 50.0%
ATGTCACCAGCACAAGCTGA+AGG - chr1_1:51521276-51521295 None:intergenic 50.0%
! TTCAGCTTGTGCTGGTGACA+TGG + chr1_1:51521275-51521294 Msa0027260:CDS 50.0%
! TTGTGCTGGTGACATGGTGA+TGG + chr1_1:51521281-51521300 Msa0027260:CDS 50.0%
! GGTGATGGCTACTGTGAAGA+AGG + chr1_1:51521296-51521315 Msa0027260:CDS 50.0%
AGAAGGGAAAGCCTGATCTC+AGG + chr1_1:51521313-51521332 Msa0027260:CDS 50.0%
TCATTGTGCTACCTGTCTGC+TGG + chr1_1:51521580-51521599 Msa0027260:intron 50.0%
TTGGCAGCACTTGCAATCCT+AGG - chr1_1:51522568-51522587 None:intergenic 50.0%
ATTAGGTCGTGGTGGTTCCG+CGG + chr1_1:51521125-51521144 Msa0027260:intron 55.0%
! CATACGGAACTTGTTCCCCG+CGG - chr1_1:51521145-51521164 None:intergenic 55.0%
CCGTGAAGGGAATCAAGGGT+AGG + chr1_1:51521238-51521257 Msa0027260:CDS 55.0%
CGTCTTCCTTCAGCTTGTGC+TGG + chr1_1:51521267-51521286 Msa0027260:CDS 55.0%
TCGTTCGTCAGCGTAAGCCA+TGG + chr1_1:51521358-51521377 Msa0027260:CDS 55.0%
!! GTAGTGCCGATGCCATTGTG+TGG + chr1_1:51522627-51522646 Msa0027260:three_prime_UTR 55.0%
ATTAGGTCGTGGTGGTTCCG+CGG + chr1_1:51521125-51521144 Msa0027260:intron 55.0%
! CATACGGAACTTGTTCCCCG+CGG - chr1_1:51521145-51521164 None:intergenic 55.0%
CCGTGAAGGGAATCAAGGGT+AGG + chr1_1:51521238-51521257 Msa0027260:CDS 55.0%
CGTCTTCCTTCAGCTTGTGC+TGG + chr1_1:51521267-51521286 Msa0027260:CDS 55.0%
TCGTTCGTCAGCGTAAGCCA+TGG + chr1_1:51521358-51521377 Msa0027260:CDS 55.0%
!! GTAGTGCCGATGCCATTGTG+TGG + chr1_1:51522627-51522646 Msa0027260:three_prime_UTR 55.0%
CGCAAGAGCAACATGAGCGG+TGG + chr1_1:51520994-51521013 Msa0027260:five_prime_UTR 60.0%
TTAGGTCGTGGTGGTTCCGC+GGG + chr1_1:51521126-51521145 Msa0027260:intron 60.0%
GTCACTGGGTCTACCAGTGG+CGG + chr1_1:51521164-51521183 Msa0027260:CDS 60.0%
CGCTGACGAACGATGACAGC+TGG - chr1_1:51521351-51521370 None:intergenic 60.0%
! AAGCCATGGCGCCGAAAGGA+CGG + chr1_1:51521372-51521391 Msa0027260:CDS 60.0%
CGCAAGAGCAACATGAGCGG+TGG + chr1_1:51520994-51521013 Msa0027260:five_prime_UTR 60.0%
TTAGGTCGTGGTGGTTCCGC+GGG + chr1_1:51521126-51521145 Msa0027260:intron 60.0%
GTCACTGGGTCTACCAGTGG+CGG + chr1_1:51521164-51521183 Msa0027260:CDS 60.0%
CGCTGACGAACGATGACAGC+TGG - chr1_1:51521351-51521370 None:intergenic 60.0%
! AAGCCATGGCGCCGAAAGGA+CGG + chr1_1:51521372-51521391 Msa0027260:CDS 60.0%
TAGGTCGTGGTGGTTCCGCG+GGG + chr1_1:51521127-51521146 Msa0027260:intron 65.0%
! GCGTAAGCCATGGCGCCGAA+AGG + chr1_1:51521368-51521387 Msa0027260:CDS 65.0%
ACACCGTCCTTTCGGCGCCA+TGG - chr1_1:51521378-51521397 None:intergenic 65.0%
TAGGTCGTGGTGGTTCCGCG+GGG + chr1_1:51521127-51521146 Msa0027260:intron 65.0%
! GCGTAAGCCATGGCGCCGAA+AGG + chr1_1:51521368-51521387 Msa0027260:CDS 65.0%
ACACCGTCCTTTCGGCGCCA+TGG - chr1_1:51521378-51521397 None:intergenic 65.0%
GGGTCTACCAGTGGCGGCGA+CGG + chr1_1:51521170-51521189 Msa0027260:CDS 70.0%
CAGTTCACCGTCGCCGCCAC+TGG - chr1_1:51521180-51521199 None:intergenic 70.0%
GGGTCTACCAGTGGCGGCGA+CGG + chr1_1:51521170-51521189 Msa0027260:CDS 70.0%
CAGTTCACCGTCGCCGCCAC+TGG - chr1_1:51521180-51521199 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 51520879 51522957 51520879 ID=Msa0027260;Name=Msa0027260
chr1_1 mRNA 51520879 51522957 51520879 ID=Msa0027260-mRNA-1;Parent=Msa0027260;Name=Msa0027260-mRNA-1;_AED=0.00;_eAED=0.00;_QI=155|1|1|1|1|1|4|357|140
chr1_1 exon 51520879 51521046 51520879 ID=Msa0027260-mRNA-1:exon:15084;Parent=Msa0027260-mRNA-1
chr1_1 exon 51521130 51521414 51521130 ID=Msa0027260-mRNA-1:exon:15085;Parent=Msa0027260-mRNA-1
chr1_1 exon 51522162 51522203 51522162 ID=Msa0027260-mRNA-1:exon:15086;Parent=Msa0027260-mRNA-1
chr1_1 exon 51522518 51522957 51522518 ID=Msa0027260-mRNA-1:exon:15087;Parent=Msa0027260-mRNA-1
chr1_1 five_prime_UTR 51520879 51521033 51520879 ID=Msa0027260-mRNA-1:five_prime_utr;Parent=Msa0027260-mRNA-1
chr1_1 CDS 51521034 51521046 51521034 ID=Msa0027260-mRNA-1:cds;Parent=Msa0027260-mRNA-1
chr1_1 CDS 51521130 51521414 51521130 ID=Msa0027260-mRNA-1:cds;Parent=Msa0027260-mRNA-1
chr1_1 CDS 51522162 51522203 51522162 ID=Msa0027260-mRNA-1:cds;Parent=Msa0027260-mRNA-1
chr1_1 CDS 51522518 51522600 51522518 ID=Msa0027260-mRNA-1:cds;Parent=Msa0027260-mRNA-1
chr1_1 three_prime_UTR 51522601 51522957 51522601 ID=Msa0027260-mRNA-1:three_prime_utr;Parent=Msa0027260-mRNA-1
Gene Sequence

>Msa0027260

ATGTCGAAGAGAGGTCGTGGTGGTTCCGCGGGGAACAAGTTCCGTATGTCACTGGGTCTACCAGTGGCGGCGACGGTGAACTGTGCTGATAACACCGGAGCAAAGAATCTGTACATCATATCCGTGAAGGGAATCAAGGGTAGGTTGAATCGTCTTCCTTCAGCTTGTGCTGGTGACATGGTGATGGCTACTGTGAAGAAGGGAAAGCCTGATCTCAGGAAGAAGGTTTTGCCAGCTGTCATCGTTCGTCAGCGTAAGCCATGGCGCCGAAAGGACGGTGTCTTCATGTACTTTGAAGATAATGCTGGTGTCATTGTGAATCCTAAGGGAGAAATGAAAGGTTCTGCTATCACCGGTCCAATTGCTAAGGAATGTGCTGATCTTTGGCCTAGGATTGCAAGTGCTGCCAATGCCATTGTATGA

Protein sequence

>Msa0027260

MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACAGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIAKECADLWPRIASAANAIV*