AlfalfaGEDB | Msa1181830

M. sativa cultivar zhongmu-4 / Msa1181830

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1181830	XP_039684693.1	51.515	99	39	2	111	201	1	98	3.48e-20	92.0

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002750	Msa1181830	0.830526	2.794373e-55	-8.615850e-47
Msa0002790	Msa1181830	0.833165	6.238153e-56	-8.615850e-47
Msa0003780	Msa1181830	0.839476	1.549007e-57	-8.615850e-47
Msa0022970	Msa1181830	0.823278	1.509586e-53	-8.615850e-47
Msa0024710	Msa1181830	0.821929	3.108504e-53	-8.615850e-47
Msa0026210	Msa1181830	0.806648	7.427335e-50	-8.615850e-47
Msa0027260	Msa1181830	0.827132	1.852162e-54	-8.615850e-47
Msa0032090	Msa1181830	0.841138	5.698249e-58	-8.615850e-47
Msa0032430	Msa1181830	0.821975	3.034130e-53	-8.615850e-47
Msa0032580	Msa1181830	0.835016	2.144582e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 53 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTCGACTTATTTAGATA+AGG	0.502450	8_1:+16443607	Msa1181830:CDS
AACCCTGAAAAGGCGTTATG+AGG	0.515253	8_1:+16439957	Msa1181830:CDS
AACCTCTTGCACATTAACAT+TGG	0.559132	8_1:-16444007	None:intergenic
AACTTACATAAAGCCGAAGG+CGG	0.606746	8_1:-16442663	None:intergenic
AAGGCGTTATGAGGAGGAGG+AGG	0.522213	8_1:+16439966	Msa1181830:CDS
AATATATATTACCAAAAGCA+AGG	0.592917	8_1:-16440222	None:intergenic
ACCGACAGACGGAGTAGATG+CGG	0.659716	8_1:-16442634	None:intergenic
ACCGCATCTACTCCGTCTGT+CGG	0.655275	8_1:+16442633	Msa1181830:CDS
ACCGGAGATGTCCAAATGAC+AGG	0.524344	8_1:+16443924	Msa1181830:CDS
ACCTCTTGCACTTTCATTCC+AGG	0.289058	8_1:-16443900	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATACCTGAAGACTGAATAAA+GGG	-	chr8_1:16439447-16439466	None:intergenic	30.0%
GAACTAACTTCAGCTTAAAT+AGG	+	chr8_1:16439512-16439531	Msa1181830:intron	30.0%
ACAAAATCGTTAATCTGTTG+TGG	+	chr8_1:16440072-16440091	Msa1181830:intron	30.0%
ATTCATAGTGTTTAGCATTG+CGG	+	chr8_1:16440361-16440380	Msa1181830:intron	30.0%
AAATTCATCCTTCTTTCATC+CGG	+	chr8_1:16441012-16441031	Msa1181830:intron	30.0%
TATTATTTCCGGATGAAAGA+AGG	-	chr8_1:16441023-16441042	None:intergenic	30.0%
GAATTTGTGAGAAGATGAAT+TGG	-	chr8_1:16441138-16441157	None:intergenic	30.0%
ACTACTATTGTTCTGTTATC+TGG	-	chr8_1:16441399-16441418	None:intergenic	30.0%
TGTAATAGCAAAACAGAGAA+GGG	-	chr8_1:16441518-16441537	None:intergenic	30.0%
ATGTAATAGCAAAACAGAGA+AGG	-	chr8_1:16441519-16441538	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	16439430	16444296	16439430	ID=Msa1181830;Name=Msa1181830
chr8_1	mRNA	16439430	16444296	16439430	ID=Msa1181830-mRNA-1;Parent=Msa1181830;Name=Msa1181830-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0\|0.5\|0.44\|0.66\|0.87\|0.77\|9\|258\|207
chr8_1	exon	16439430	16439462	16439430	ID=Msa1181830-mRNA-1:exon:6143;Parent=Msa1181830-mRNA-1
chr8_1	exon	16439883	16439987	16439883	ID=Msa1181830-mRNA-1:exon:6144;Parent=Msa1181830-mRNA-1
chr8_1	exon	16440173	16440232	16440173	ID=Msa1181830-mRNA-1:exon:6145;Parent=Msa1181830-mRNA-1
chr8_1	exon	16442570	16442678	16442570	ID=Msa1181830-mRNA-1:exon:6146;Parent=Msa1181830-mRNA-1
chr8_1	exon	16442798	16442820	16442798	ID=Msa1181830-mRNA-1:exon:6147;Parent=Msa1181830-mRNA-1
chr8_1	exon	16442932	16442995	16442932	ID=Msa1181830-mRNA-1:exon:6148;Parent=Msa1181830-mRNA-1
chr8_1	exon	16443606	16443683	16443606	ID=Msa1181830-mRNA-1:exon:6149;Parent=Msa1181830-mRNA-1
chr8_1	exon	16443865	16444197	16443865	ID=Msa1181830-mRNA-1:exon:6150;Parent=Msa1181830-mRNA-1
chr8_1	exon	16444220	16444296	16444220	ID=Msa1181830-mRNA-1:exon:6151;Parent=Msa1181830-mRNA-1
chr8_1	CDS	16439430	16439462	16439430	ID=Msa1181830-mRNA-1:cds;Parent=Msa1181830-mRNA-1
chr8_1	CDS	16439883	16439987	16439883	ID=Msa1181830-mRNA-1:cds;Parent=Msa1181830-mRNA-1
chr8_1	CDS	16440173	16440232	16440173	ID=Msa1181830-mRNA-1:cds;Parent=Msa1181830-mRNA-1
chr8_1	CDS	16442570	16442678	16442570	ID=Msa1181830-mRNA-1:cds;Parent=Msa1181830-mRNA-1
chr8_1	CDS	16442798	16442820	16442798	ID=Msa1181830-mRNA-1:cds;Parent=Msa1181830-mRNA-1
chr8_1	CDS	16442932	16442995	16442932	ID=Msa1181830-mRNA-1:cds;Parent=Msa1181830-mRNA-1
chr8_1	CDS	16443606	16443683	16443606	ID=Msa1181830-mRNA-1:cds;Parent=Msa1181830-mRNA-1
chr8_1	CDS	16443865	16444016	16443865	ID=Msa1181830-mRNA-1:cds;Parent=Msa1181830-mRNA-1
chr8_1	three_prime_UTR	16444017	16444197	16444017	ID=Msa1181830-mRNA-1:three_prime_utr;Parent=Msa1181830-mRNA-1
chr8_1	three_prime_UTR	16444220	16444296	16444220	ID=Msa1181830-mRNA-1:three_prime_utr;Parent=Msa1181830-mRNA-1

Gene Sequence

>Msa1181830

ATGGAGGAAATCGCCCCTTTATTCAGTCTTCAGGATGAGCTATGTTTTACAGATGAGGATGCCACAGAGCAGGTGTTAAAACATTGTGGAGCTCATGTCAATTACACAACCCTGAAAAGGCGTTATGAGGAGGAGGAGCTTTCTCTTACCTTCGACTCATCTGTTGTCGCCGTTCGTGGTTACATGACCTTGCTTTTGATAGTGTTTAGCGTTGCGGCAACCCTAACAATAAAAACCCATCACACTCTCACTTTCATCCATACCGCATCTACTCCGTCTGTCGGTGGAGATCCGCCTTCGGCTTTATATTATAAGGAAGACTCCATGTCGTTTACGTTTTCAGTCTTGGATGATCAGGGTCGTACTATTCATATTCAGTCTGATCATTCTCCTGGAAATTCGACTTATTTAGATAAGGTTCTTGCTGCTTTTGGAATTAATGTGGTAAAGGTTCTTGATGAAGATGAACAAGGAAAATCTACTTCGACAGATTCTCTTCTTGCTGCACCTGGAATGAAAGTGCAAGAGGTTACCGGAGATGTCCAAATGACAGGCAAGTTTTTTGAAAACAATCTTTTACCAAGAAAAAGGCCGCGACCAGAAAGTATAGGTAGCCAATGTTAA

Protein sequence

>Msa1181830

MEEIAPLFSLQDELCFTDEDATEQVLKHCGAHVNYTTLKRRYEEEELSLTFDSSVVAVRGYMTLLLIVFSVAATLTIKTHHTLTFIHTASTPSVGGDPPSALYYKEDSMSFTFSVLDDQGRTIHIQSDHSPGNSTYLDKVLAAFGINVVKVLDEDEQGKSTSTDSLLAAPGMKVQEVTGDVQMTGKFFENNLLPRKRPRPESIGSQC*