AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0588360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0588360 MtrunA17_Chr4g0004631 100.000 95 0 0 1 95 1 95 3.16e-65 191
Msa0588360 MtrunA17_Chr2g0331701 96.809 94 3 0 1 94 1 94 1.10e-62 184
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0588360 AT1G52300.1 89.362 94 10 0 1 94 1 94 1.72e-57 172
Msa0588360 AT3G16080.1 88.298 94 11 0 1 94 1 94 4.23e-57 171
Msa0588360 AT1G15250.2 87.368 95 12 0 1 95 1 95 7.56e-57 170
Msa0588360 AT1G15250.1 87.368 95 12 0 1 95 1 95 7.56e-57 170
Msa0588360 AT3G16080.2 93.333 45 3 0 1 45 1 45 9.79e-25 89.0

Find 48 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAGCTGCTCCCTTGTTCC+TGG 0.247813 4_2:-10510907 None:intergenic
TTAACGCAGACTCTCTGATT+AGG 0.304854 4_2:+10509365 Msa0588360:five_prime_UTR
TTTAATTATGTTACAATGTC+AGG 0.318963 4_2:+10511062 Msa0588360:three_prime_UTR
ACTGGAGTGAGAAGGCTATT+AGG 0.322324 4_2:+10509825 Msa0588360:CDS
ATTGTGTGATTTCAGATAAC+TGG 0.324608 4_2:+10509807 Msa0588360:intron
GCTGCTTCTACCTAAGTCTT+TGG 0.329136 4_2:+10510924 Msa0588360:exon
TAACGCAGACTCTCTGATTA+GGG 0.337961 4_2:+10509366 Msa0588360:five_prime_UTR
TTGCTGGGCTAATTAATGAT+AGG 0.376503 4_2:+10510958 Msa0588360:three_prime_UTR
ATGCTGAGCAGCGACTCTTC+TGG 0.400063 4_2:-10509602 None:intergenic
AATTTATATATGAACTCAAA+TGG 0.404538 4_2:-10509332 None:intergenic
ATTAAATTCATATTGAAAGA+AGG 0.420357 4_2:-10511045 None:intergenic
AGACCCACACACTCTGTGTT+AGG 0.433282 4_2:+10509556 Msa0588360:CDS
GCAGCTGCTCCCTTGTTCCT+GGG 0.437974 4_2:-10510906 None:intergenic
CTTATCCAGCTGCACGTGTC+AGG 0.448216 4_2:+10509628 Msa0588360:CDS
GGTAAGGGAACAGGCAGTTT+CGG 0.454393 4_2:+10509519 Msa0588360:CDS
TTAAATTCATATTGAAAGAA+GGG 0.463210 4_2:-10511044 None:intergenic
AGGAGAAAGACCACTGGAAC+TGG 0.467139 4_2:+10509845 Msa0588360:CDS
ATTTATATATGAACTCAAAT+GGG 0.468765 4_2:-10509331 None:intergenic
CATTTCCTGACACGTGCAGC+TGG 0.473916 4_2:-10509633 None:intergenic
TTATAACATGTGACTTGAGT+TGG 0.483591 4_2:+10511170 Msa0588360:three_prime_UTR
TTTACATATGGGCCTTAATG+TGG 0.505509 4_2:-10509293 None:intergenic
AAGCAATGTTCCAAAGACTT+AGG 0.510606 4_2:-10510934 None:intergenic
GTTGTAGACGAAGCAGAAGC+AGG 0.529192 4_2:-10509396 None:intergenic
TTATAATAACAAAATACTCA+TGG 0.533753 4_2:-10511153 None:intergenic
AGGGAAATGAAAACAACAGA+TGG 0.548538 4_2:-10511025 None:intergenic
TGAAGCTGCACCCAGGAACA+AGG 0.550050 4_2:+10510896 Msa0588360:CDS
AGCAGCGACTCTTCTGGAGA+TGG 0.555977 4_2:-10509596 None:intergenic
CACACCTAACACAGAGTGTG+TGG 0.573805 4_2:-10509560 None:intergenic
TTCAAGAGTGGATTCAGAGA+AGG 0.583941 4_2:+10509902 Msa0588360:CDS
AACATGTGACTTGAGTTGGC+CGG 0.589352 4_2:+10511174 Msa0588360:three_prime_UTR
ACAAAATACTCATGGAAACA+AGG 0.598048 4_2:-10511145 None:intergenic
TGTTAAATGAGAATTTGAGT+TGG 0.601919 4_2:+10511103 Msa0588360:three_prime_UTR
TTCAGATAACTGGAGTGAGA+AGG 0.609846 4_2:+10509817 Msa0588360:intron
CAGGCAGTTTCGGTAAGAGA+AGG 0.615161 4_2:+10509529 Msa0588360:CDS
CCACTGGAACTGGTAGGATG+AGG 0.619264 4_2:+10509855 Msa0588360:CDS
GCTATTAGGAGAAAGACCAC+TGG 0.627964 4_2:+10509839 Msa0588360:CDS
CTGGTAGGATGAGGTACTTG+AGG 0.643276 4_2:+10509864 Msa0588360:CDS
CACACACTCTGTGTTAGGTG+TGG 0.644280 4_2:+10509561 Msa0588360:CDS
GAAAGACCACTGGAACTGGT+AGG 0.652178 4_2:+10509849 Msa0588360:CDS
GAAGCTGCACCCAGGAACAA+GGG 0.652652 4_2:+10510897 Msa0588360:CDS
TCTGGAGATGGAAACTGCGA+CGG 0.655757 4_2:-10509584 None:intergenic
CCTCATCCTACCAGTTCCAG+TGG 0.656605 4_2:-10509855 None:intergenic
CAGGTACTGAAGCTGCACCC+AGG 0.673244 4_2:+10510889 Msa0588360:intron
GTAGACGAAGCAGAAGCAGG+TGG 0.677786 4_2:-10509393 None:intergenic
TGCTTCGTCTACAACTACAA+TGG 0.680709 4_2:+10509404 Msa0588360:exon
ACACCTAACACAGAGTGTGT+GGG 0.685746 4_2:-10509559 None:intergenic
GTGCCTCGCAGATTCAAGAG+TGG 0.690811 4_2:+10509890 Msa0588360:CDS
AATCCACTCTTGAATCTGCG+AGG 0.695196 4_2:-10509893 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTGATTTTTGAATTT+GGG + chr4_2:10509776-10509795 Msa0588360:intron 10.0%
!!! AGAATATTCATTTTTTTTTT+TGG + chr4_2:10510101-10510120 Msa0588360:intron 10.0%
!!! CGTTATATTATTTTTATATA+TGG + chr4_2:10510414-10510433 Msa0588360:intron 10.0%
!!! AAAATTTGATTTTTGAATTT+GGG + chr4_2:10509776-10509795 Msa0588360:intron 10.0%
!!! AGAATATTCATTTTTTTTTT+TGG + chr4_2:10510101-10510120 Msa0588360:intron 10.0%
!!! CGTTATATTATTTTTATATA+TGG + chr4_2:10510414-10510433 Msa0588360:intron 10.0%
!! AACAAATTTATAGAAAAAAC+TGG + chr4_2:10509269-10509288 Msa0588360:five_prime_UTR 15.0%
!! ACAAATTTATAGAAAAAACT+GGG + chr4_2:10509270-10509289 Msa0588360:five_prime_UTR 15.0%
!! ATTTATATATGAACTCAAAT+GGG - chr4_2:10509334-10509353 None:intergenic 15.0%
!! AATTTATATATGAACTCAAA+TGG - chr4_2:10509335-10509354 None:intergenic 15.0%
!!! TTTTTTCGATTTTAGAAAAT+TGG + chr4_2:10509664-10509683 Msa0588360:intron 15.0%
!!! CAAAATTTGATTTTTGAATT+TGG + chr4_2:10509775-10509794 Msa0588360:intron 15.0%
!!! ATTTAATTGATTTATCAATC+AGG + chr4_2:10510067-10510086 Msa0588360:intron 15.0%
!! TTGAAAAAACCTAATAAAAA+TGG + chr4_2:10510484-10510503 Msa0588360:intron 15.0%
!! TTAAATTCATATTGAAAGAA+GGG - chr4_2:10511047-10511066 None:intergenic 15.0%
!! ATTAAATTCATATTGAAAGA+AGG - chr4_2:10511048-10511067 None:intergenic 15.0%
!! TTATAATAACAAAATACTCA+TGG - chr4_2:10511156-10511175 None:intergenic 15.0%
!! AACAAATTTATAGAAAAAAC+TGG + chr4_2:10509269-10509288 Msa0588360:five_prime_UTR 15.0%
!! ACAAATTTATAGAAAAAACT+GGG + chr4_2:10509270-10509289 Msa0588360:five_prime_UTR 15.0%
!! ATTTATATATGAACTCAAAT+GGG - chr4_2:10509334-10509353 None:intergenic 15.0%
!! AATTTATATATGAACTCAAA+TGG - chr4_2:10509335-10509354 None:intergenic 15.0%
!!! TTTTTTCGATTTTAGAAAAT+TGG + chr4_2:10509664-10509683 Msa0588360:intron 15.0%
!!! CAAAATTTGATTTTTGAATT+TGG + chr4_2:10509775-10509794 Msa0588360:intron 15.0%
!!! ATTTAATTGATTTATCAATC+AGG + chr4_2:10510067-10510086 Msa0588360:intron 15.0%
!! TTGAAAAAACCTAATAAAAA+TGG + chr4_2:10510484-10510503 Msa0588360:intron 15.0%
!! TTAAATTCATATTGAAAGAA+GGG - chr4_2:10511047-10511066 None:intergenic 15.0%
!! ATTAAATTCATATTGAAAGA+AGG - chr4_2:10511048-10511067 None:intergenic 15.0%
!! TTATAATAACAAAATACTCA+TGG - chr4_2:10511156-10511175 None:intergenic 15.0%
!!! TGTTTTTTGATTTTCGAAAA+TGG + chr4_2:10509744-10509763 Msa0588360:intron 20.0%
!!! GTTTTTTGATTTTCGAAAAT+GGG + chr4_2:10509745-10509764 Msa0588360:intron 20.0%
!! GTTACTAAATGTGTTAATTT+AGG + chr4_2:10510224-10510243 Msa0588360:intron 20.0%
!! TTAGTAGATAAGTTCAAATA+AGG + chr4_2:10510542-10510561 Msa0588360:intron 20.0%
!!! ATTTTTACATGTTTTGCTAT+AGG + chr4_2:10510670-10510689 Msa0588360:intron 20.0%
!! TGATTATTATTGTTTAAACC+AGG + chr4_2:10510870-10510889 Msa0588360:intron 20.0%
!! TTTAATTATGTTACAATGTC+AGG + chr4_2:10511062-10511081 Msa0588360:three_prime_UTR 20.0%
!!! TGTTTTTTGATTTTCGAAAA+TGG + chr4_2:10509744-10509763 Msa0588360:intron 20.0%
!!! GTTTTTTGATTTTCGAAAAT+GGG + chr4_2:10509745-10509764 Msa0588360:intron 20.0%
!! GTTACTAAATGTGTTAATTT+AGG + chr4_2:10510224-10510243 Msa0588360:intron 20.0%
!! TTAGTAGATAAGTTCAAATA+AGG + chr4_2:10510542-10510561 Msa0588360:intron 20.0%
!!! ATTTTTACATGTTTTGCTAT+AGG + chr4_2:10510670-10510689 Msa0588360:intron 20.0%
!! TGATTATTATTGTTTAAACC+AGG + chr4_2:10510870-10510889 Msa0588360:intron 20.0%
!! TTTAATTATGTTACAATGTC+AGG + chr4_2:10511062-10511081 Msa0588360:three_prime_UTR 20.0%
! CAAACATTGGAATGAAATTA+GGG - chr4_2:10509465-10509484 None:intergenic 25.0%
! TCAAACATTGGAATGAAATT+AGG - chr4_2:10509466-10509485 None:intergenic 25.0%
!!! TCATTGATTCAATTCAAGTA+AGG - chr4_2:10509490-10509509 None:intergenic 25.0%
!! ATTGAATCAATGATTTTTGC+AGG + chr4_2:10509497-10509516 Msa0588360:intron 25.0%
!! TTGAATCAATGATTTTTGCA+GGG + chr4_2:10509498-10509517 Msa0588360:intron 25.0%
!!! TTGGTGTTTAAATTCGATTT+TGG + chr4_2:10509683-10509702 Msa0588360:intron 25.0%
!!! ATTTTGGTGTCTTTAGATTT+AGG + chr4_2:10509699-10509718 Msa0588360:intron 25.0%
!!! TTTTGGTGTCTTTAGATTTA+GGG + chr4_2:10509700-10509719 Msa0588360:intron 25.0%
! TACACCTAAATAAAGAGATT+TGG - chr4_2:10510254-10510273 None:intergenic 25.0%
!!! AGCTTATGACCATTTTTATT+AGG - chr4_2:10510496-10510515 None:intergenic 25.0%
! ATTCACTTAAAACAGAGATT+TGG - chr4_2:10510714-10510733 None:intergenic 25.0%
!! CTTTTGTTAGTATGATTGTA+TGG + chr4_2:10510790-10510809 Msa0588360:intron 25.0%
!!! TTCTGAGTTGTTATTTTTTC+TGG + chr4_2:10510829-10510848 Msa0588360:intron 25.0%
!!! AGGAGTTAAGATTTTTGTTT+AGG + chr4_2:10510978-10510997 Msa0588360:three_prime_UTR 25.0%
!!! GGAGTTAAGATTTTTGTTTA+GGG + chr4_2:10510979-10510998 Msa0588360:three_prime_UTR 25.0%
!!! GAGTTAAGATTTTTGTTTAG+GGG + chr4_2:10510980-10510999 Msa0588360:three_prime_UTR 25.0%
! TGTTAAATGAGAATTTGAGT+TGG + chr4_2:10511103-10511122 Msa0588360:three_prime_UTR 25.0%
! CAAACATTGGAATGAAATTA+GGG - chr4_2:10509465-10509484 None:intergenic 25.0%
! TCAAACATTGGAATGAAATT+AGG - chr4_2:10509466-10509485 None:intergenic 25.0%
!!! TCATTGATTCAATTCAAGTA+AGG - chr4_2:10509490-10509509 None:intergenic 25.0%
!! ATTGAATCAATGATTTTTGC+AGG + chr4_2:10509497-10509516 Msa0588360:intron 25.0%
!! TTGAATCAATGATTTTTGCA+GGG + chr4_2:10509498-10509517 Msa0588360:intron 25.0%
!!! TTGGTGTTTAAATTCGATTT+TGG + chr4_2:10509683-10509702 Msa0588360:intron 25.0%
!!! ATTTTGGTGTCTTTAGATTT+AGG + chr4_2:10509699-10509718 Msa0588360:intron 25.0%
!!! TTTTGGTGTCTTTAGATTTA+GGG + chr4_2:10509700-10509719 Msa0588360:intron 25.0%
! TACACCTAAATAAAGAGATT+TGG - chr4_2:10510254-10510273 None:intergenic 25.0%
!!! AGCTTATGACCATTTTTATT+AGG - chr4_2:10510496-10510515 None:intergenic 25.0%
! ATTCACTTAAAACAGAGATT+TGG - chr4_2:10510714-10510733 None:intergenic 25.0%
!! CTTTTGTTAGTATGATTGTA+TGG + chr4_2:10510790-10510809 Msa0588360:intron 25.0%
!!! TTCTGAGTTGTTATTTTTTC+TGG + chr4_2:10510829-10510848 Msa0588360:intron 25.0%
!!! AGGAGTTAAGATTTTTGTTT+AGG + chr4_2:10510978-10510997 Msa0588360:three_prime_UTR 25.0%
!!! GGAGTTAAGATTTTTGTTTA+GGG + chr4_2:10510979-10510998 Msa0588360:three_prime_UTR 25.0%
!!! GAGTTAAGATTTTTGTTTAG+GGG + chr4_2:10510980-10510999 Msa0588360:three_prime_UTR 25.0%
! TGTTAAATGAGAATTTGAGT+TGG + chr4_2:10511103-10511122 Msa0588360:three_prime_UTR 25.0%
!! TATGAACTCAAATGGGTTTT+CGG - chr4_2:10509327-10509346 None:intergenic 30.0%
!!! AAATTAGGGTTTTGAATCGA+TGG - chr4_2:10509451-10509470 None:intergenic 30.0%
TTCAAGTAAGGATCAAACAT+TGG - chr4_2:10509478-10509497 None:intergenic 30.0%
! TAGATTTAGGGTTTAAGTTC+AGG + chr4_2:10509712-10509731 Msa0588360:intron 30.0%
ATTGTGTGATTTCAGATAAC+TGG + chr4_2:10509807-10509826 Msa0588360:intron 30.0%
!!! TTCCTGTGTTTAGTTTTTCT+AGG + chr4_2:10509945-10509964 Msa0588360:intron 30.0%
! AGAGCCAAATCTCTTTATTT+AGG + chr4_2:10510247-10510266 Msa0588360:intron 30.0%
!!! TTTAGGTGTAGCAACTTTTT+TGG + chr4_2:10510264-10510283 Msa0588360:intron 30.0%
!!! TTAGGTGTAGCAACTTTTTT+GGG + chr4_2:10510265-10510284 Msa0588360:intron 30.0%
! AGGTTCTAATTTAGATCAGT+TGG + chr4_2:10510575-10510594 Msa0588360:intron 30.0%
AATTTAGATCAGTTGGATCT+TGG + chr4_2:10510582-10510601 Msa0588360:intron 30.0%
TTAGTATGATTGTATGGAAG+TGG + chr4_2:10510796-10510815 Msa0588360:intron 30.0%
ACAAAATACTCATGGAAACA+AGG - chr4_2:10511148-10511167 None:intergenic 30.0%
TTATAACATGTGACTTGAGT+TGG + chr4_2:10511170-10511189 Msa0588360:three_prime_UTR 30.0%
!! TATGAACTCAAATGGGTTTT+CGG - chr4_2:10509327-10509346 None:intergenic 30.0%
!!! AAATTAGGGTTTTGAATCGA+TGG - chr4_2:10509451-10509470 None:intergenic 30.0%
TTCAAGTAAGGATCAAACAT+TGG - chr4_2:10509478-10509497 None:intergenic 30.0%
! TAGATTTAGGGTTTAAGTTC+AGG + chr4_2:10509712-10509731 Msa0588360:intron 30.0%
ATTGTGTGATTTCAGATAAC+TGG + chr4_2:10509807-10509826 Msa0588360:intron 30.0%
!!! TTCCTGTGTTTAGTTTTTCT+AGG + chr4_2:10509945-10509964 Msa0588360:intron 30.0%
! AGAGCCAAATCTCTTTATTT+AGG + chr4_2:10510247-10510266 Msa0588360:intron 30.0%
!!! TTTAGGTGTAGCAACTTTTT+TGG + chr4_2:10510264-10510283 Msa0588360:intron 30.0%
!!! TTAGGTGTAGCAACTTTTTT+GGG + chr4_2:10510265-10510284 Msa0588360:intron 30.0%
! AGGTTCTAATTTAGATCAGT+TGG + chr4_2:10510575-10510594 Msa0588360:intron 30.0%
AATTTAGATCAGTTGGATCT+TGG + chr4_2:10510582-10510601 Msa0588360:intron 30.0%
TTAGTATGATTGTATGGAAG+TGG + chr4_2:10510796-10510815 Msa0588360:intron 30.0%
ACAAAATACTCATGGAAACA+AGG - chr4_2:10511148-10511167 None:intergenic 30.0%
TTATAACATGTGACTTGAGT+TGG + chr4_2:10511170-10511189 Msa0588360:three_prime_UTR 30.0%
TTTACATATGGGCCTTAATG+TGG - chr4_2:10509296-10509315 None:intergenic 35.0%
!!! CGGGTCTGTTTTTTACATAT+GGG - chr4_2:10509307-10509326 None:intergenic 35.0%
!!! TCGGGTCTGTTTTTTACATA+TGG - chr4_2:10509308-10509327 None:intergenic 35.0%
!! ATGAACTCAAATGGGTTTTC+GGG - chr4_2:10509326-10509345 None:intergenic 35.0%
! TCAATGATTTTTGCAGGGTA+AGG + chr4_2:10509503-10509522 Msa0588360:intron 35.0%
! CAATGATTTTTGCAGGGTAA+GGG + chr4_2:10509504-10509523 Msa0588360:intron 35.0%
! TAGGGTTTAAGTTCAGGAAA+TGG + chr4_2:10509718-10509737 Msa0588360:intron 35.0%
GTCCTAGAAAAACTAAACAC+AGG - chr4_2:10509950-10509969 None:intergenic 35.0%
TAAGCTGTATATCCAAAGCA+GGG - chr4_2:10510326-10510345 None:intergenic 35.0%
ATAAGCTGTATATCCAAAGC+AGG - chr4_2:10510327-10510346 None:intergenic 35.0%
GATCTAAATTAGAACCTGCA+TGG - chr4_2:10510572-10510591 None:intergenic 35.0%
!! AGTTGGATCTTGGTTCTTTT+AGG + chr4_2:10510592-10510611 Msa0588360:intron 35.0%
AAGCAATGTTCCAAAGACTT+AGG - chr4_2:10510937-10510956 None:intergenic 35.0%
!!! TTTGGAACATTGCTTTTTGC+TGG + chr4_2:10510942-10510961 Msa0588360:three_prime_UTR 35.0%
!!! TTGGAACATTGCTTTTTGCT+GGG + chr4_2:10510943-10510962 Msa0588360:three_prime_UTR 35.0%
TTGCTGGGCTAATTAATGAT+AGG + chr4_2:10510958-10510977 Msa0588360:three_prime_UTR 35.0%
!! AAGATTTTTGTTTAGGGGCA+TGG + chr4_2:10510985-10511004 Msa0588360:three_prime_UTR 35.0%
AGGGAAATGAAAACAACAGA+TGG - chr4_2:10511028-10511047 None:intergenic 35.0%
TTTACATATGGGCCTTAATG+TGG - chr4_2:10509296-10509315 None:intergenic 35.0%
!!! CGGGTCTGTTTTTTACATAT+GGG - chr4_2:10509307-10509326 None:intergenic 35.0%
!!! TCGGGTCTGTTTTTTACATA+TGG - chr4_2:10509308-10509327 None:intergenic 35.0%
!! ATGAACTCAAATGGGTTTTC+GGG - chr4_2:10509326-10509345 None:intergenic 35.0%
! TCAATGATTTTTGCAGGGTA+AGG + chr4_2:10509503-10509522 Msa0588360:intron 35.0%
! CAATGATTTTTGCAGGGTAA+GGG + chr4_2:10509504-10509523 Msa0588360:intron 35.0%
! TAGGGTTTAAGTTCAGGAAA+TGG + chr4_2:10509718-10509737 Msa0588360:intron 35.0%
GTCCTAGAAAAACTAAACAC+AGG - chr4_2:10509950-10509969 None:intergenic 35.0%
TAAGCTGTATATCCAAAGCA+GGG - chr4_2:10510326-10510345 None:intergenic 35.0%
ATAAGCTGTATATCCAAAGC+AGG - chr4_2:10510327-10510346 None:intergenic 35.0%
GATCTAAATTAGAACCTGCA+TGG - chr4_2:10510572-10510591 None:intergenic 35.0%
!! AGTTGGATCTTGGTTCTTTT+AGG + chr4_2:10510592-10510611 Msa0588360:intron 35.0%
AAGCAATGTTCCAAAGACTT+AGG - chr4_2:10510937-10510956 None:intergenic 35.0%
!!! TTTGGAACATTGCTTTTTGC+TGG + chr4_2:10510942-10510961 Msa0588360:three_prime_UTR 35.0%
!!! TTGGAACATTGCTTTTTGCT+GGG + chr4_2:10510943-10510962 Msa0588360:three_prime_UTR 35.0%
TTGCTGGGCTAATTAATGAT+AGG + chr4_2:10510958-10510977 Msa0588360:three_prime_UTR 35.0%
!! AAGATTTTTGTTTAGGGGCA+TGG + chr4_2:10510985-10511004 Msa0588360:three_prime_UTR 35.0%
AGGGAAATGAAAACAACAGA+TGG - chr4_2:10511028-10511047 None:intergenic 35.0%
GAAAAAACTGGGCCACATTA+AGG + chr4_2:10509281-10509300 Msa0588360:five_prime_UTR 40.0%
TTAACGCAGACTCTCTGATT+AGG + chr4_2:10509365-10509384 Msa0588360:five_prime_UTR 40.0%
TAACGCAGACTCTCTGATTA+GGG + chr4_2:10509366-10509385 Msa0588360:five_prime_UTR 40.0%
TGCTTCGTCTACAACTACAA+TGG + chr4_2:10509404-10509423 Msa0588360:exon 40.0%
TTCAGATAACTGGAGTGAGA+AGG + chr4_2:10509817-10509836 Msa0588360:intron 40.0%
! TTCAAGAGTGGATTCAGAGA+AGG + chr4_2:10509902-10509921 Msa0588360:CDS 40.0%
TCAAATAAGGCAATCCATGC+AGG + chr4_2:10510555-10510574 Msa0588360:intron 40.0%
GAAAAAACTGGGCCACATTA+AGG + chr4_2:10509281-10509300 Msa0588360:five_prime_UTR 40.0%
TTAACGCAGACTCTCTGATT+AGG + chr4_2:10509365-10509384 Msa0588360:five_prime_UTR 40.0%
TAACGCAGACTCTCTGATTA+GGG + chr4_2:10509366-10509385 Msa0588360:five_prime_UTR 40.0%
TGCTTCGTCTACAACTACAA+TGG + chr4_2:10509404-10509423 Msa0588360:exon 40.0%
TTCAGATAACTGGAGTGAGA+AGG + chr4_2:10509817-10509836 Msa0588360:intron 40.0%
! TTCAAGAGTGGATTCAGAGA+AGG + chr4_2:10509902-10509921 Msa0588360:CDS 40.0%
TCAAATAAGGCAATCCATGC+AGG + chr4_2:10510555-10510574 Msa0588360:intron 40.0%
! TTTTTGCAGGGTAAGGGAAC+AGG + chr4_2:10509510-10509529 Msa0588360:intron 45.0%
ACACCTAACACAGAGTGTGT+GGG - chr4_2:10509562-10509581 None:intergenic 45.0%
ACTGGAGTGAGAAGGCTATT+AGG + chr4_2:10509825-10509844 Msa0588360:CDS 45.0%
GCTATTAGGAGAAAGACCAC+TGG + chr4_2:10509839-10509858 Msa0588360:CDS 45.0%
AATCCACTCTTGAATCTGCG+AGG - chr4_2:10509896-10509915 None:intergenic 45.0%
CAATGATCAAGTCCCTGCTT+TGG + chr4_2:10510311-10510330 Msa0588360:intron 45.0%
GCTGCTTCTACCTAAGTCTT+TGG + chr4_2:10510924-10510943 Msa0588360:exon 45.0%
!! AACATGTGACTTGAGTTGGC+CGG + chr4_2:10511174-10511193 Msa0588360:three_prime_UTR 45.0%
! TTTTTGCAGGGTAAGGGAAC+AGG + chr4_2:10509510-10509529 Msa0588360:intron 45.0%
ACACCTAACACAGAGTGTGT+GGG - chr4_2:10509562-10509581 None:intergenic 45.0%
ACTGGAGTGAGAAGGCTATT+AGG + chr4_2:10509825-10509844 Msa0588360:CDS 45.0%
GCTATTAGGAGAAAGACCAC+TGG + chr4_2:10509839-10509858 Msa0588360:CDS 45.0%
AATCCACTCTTGAATCTGCG+AGG - chr4_2:10509896-10509915 None:intergenic 45.0%
CAATGATCAAGTCCCTGCTT+TGG + chr4_2:10510311-10510330 Msa0588360:intron 45.0%
GCTGCTTCTACCTAAGTCTT+TGG + chr4_2:10510924-10510943 Msa0588360:exon 45.0%
GTTGTAGACGAAGCAGAAGC+AGG - chr4_2:10509399-10509418 None:intergenic 50.0%
GGTAAGGGAACAGGCAGTTT+CGG + chr4_2:10509519-10509538 Msa0588360:CDS 50.0%
CAGGCAGTTTCGGTAAGAGA+AGG + chr4_2:10509529-10509548 Msa0588360:CDS 50.0%
AGACCCACACACTCTGTGTT+AGG + chr4_2:10509556-10509575 Msa0588360:CDS 50.0%
CACACCTAACACAGAGTGTG+TGG - chr4_2:10509563-10509582 None:intergenic 50.0%
CACACACTCTGTGTTAGGTG+TGG + chr4_2:10509561-10509580 Msa0588360:CDS 50.0%
TCTGGAGATGGAAACTGCGA+CGG - chr4_2:10509587-10509606 None:intergenic 50.0%
AGGAGAAAGACCACTGGAAC+TGG + chr4_2:10509845-10509864 Msa0588360:CDS 50.0%
GAAAGACCACTGGAACTGGT+AGG + chr4_2:10509849-10509868 Msa0588360:CDS 50.0%
! CTGGTAGGATGAGGTACTTG+AGG + chr4_2:10509864-10509883 Msa0588360:CDS 50.0%
!! ACATGTGACTTGAGTTGGCC+GGG + chr4_2:10511175-10511194 Msa0588360:three_prime_UTR 50.0%
GTTGTAGACGAAGCAGAAGC+AGG - chr4_2:10509399-10509418 None:intergenic 50.0%
GGTAAGGGAACAGGCAGTTT+CGG + chr4_2:10509519-10509538 Msa0588360:CDS 50.0%
CAGGCAGTTTCGGTAAGAGA+AGG + chr4_2:10509529-10509548 Msa0588360:CDS 50.0%
AGACCCACACACTCTGTGTT+AGG + chr4_2:10509556-10509575 Msa0588360:CDS 50.0%
CACACCTAACACAGAGTGTG+TGG - chr4_2:10509563-10509582 None:intergenic 50.0%
CACACACTCTGTGTTAGGTG+TGG + chr4_2:10509561-10509580 Msa0588360:CDS 50.0%
TCTGGAGATGGAAACTGCGA+CGG - chr4_2:10509587-10509606 None:intergenic 50.0%
AGGAGAAAGACCACTGGAAC+TGG + chr4_2:10509845-10509864 Msa0588360:CDS 50.0%
GAAAGACCACTGGAACTGGT+AGG + chr4_2:10509849-10509868 Msa0588360:CDS 50.0%
! CTGGTAGGATGAGGTACTTG+AGG + chr4_2:10509864-10509883 Msa0588360:CDS 50.0%
GTAGACGAAGCAGAAGCAGG+TGG - chr4_2:10509396-10509415 None:intergenic 55.0%
! AGCAGCGACTCTTCTGGAGA+TGG - chr4_2:10509599-10509618 None:intergenic 55.0%
ATGCTGAGCAGCGACTCTTC+TGG - chr4_2:10509605-10509624 None:intergenic 55.0%
CTTATCCAGCTGCACGTGTC+AGG + chr4_2:10509628-10509647 Msa0588360:CDS 55.0%
CATTTCCTGACACGTGCAGC+TGG - chr4_2:10509636-10509655 None:intergenic 55.0%
CCTCATCCTACCAGTTCCAG+TGG - chr4_2:10509858-10509877 None:intergenic 55.0%
CCACTGGAACTGGTAGGATG+AGG + chr4_2:10509855-10509874 Msa0588360:CDS 55.0%
GTGCCTCGCAGATTCAAGAG+TGG + chr4_2:10509890-10509909 Msa0588360:CDS 55.0%
TGAAGCTGCACCCAGGAACA+AGG + chr4_2:10510896-10510915 Msa0588360:CDS 55.0%
GAAGCTGCACCCAGGAACAA+GGG + chr4_2:10510897-10510916 Msa0588360:CDS 55.0%
GTAGACGAAGCAGAAGCAGG+TGG - chr4_2:10509396-10509415 None:intergenic 55.0%
! AGCAGCGACTCTTCTGGAGA+TGG - chr4_2:10509599-10509618 None:intergenic 55.0%
ATGCTGAGCAGCGACTCTTC+TGG - chr4_2:10509605-10509624 None:intergenic 55.0%
CTTATCCAGCTGCACGTGTC+AGG + chr4_2:10509628-10509647 Msa0588360:CDS 55.0%
CATTTCCTGACACGTGCAGC+TGG - chr4_2:10509636-10509655 None:intergenic 55.0%
CCTCATCCTACCAGTTCCAG+TGG - chr4_2:10509858-10509877 None:intergenic 55.0%
CCACTGGAACTGGTAGGATG+AGG + chr4_2:10509855-10509874 Msa0588360:CDS 55.0%
GTGCCTCGCAGATTCAAGAG+TGG + chr4_2:10509890-10509909 Msa0588360:CDS 55.0%
TGAAGCTGCACCCAGGAACA+AGG + chr4_2:10510896-10510915 Msa0588360:CDS 55.0%
GAAGCTGCACCCAGGAACAA+GGG + chr4_2:10510897-10510916 Msa0588360:CDS 55.0%
CTGGGTGCAGCTTCAGTACC+TGG - chr4_2:10510891-10510910 None:intergenic 60.0%
!! CAGGTACTGAAGCTGCACCC+AGG + chr4_2:10510889-10510908 Msa0588360:intron 60.0%
GCAGCTGCTCCCTTGTTCCT+GGG - chr4_2:10510909-10510928 None:intergenic 60.0%
AGCAGCTGCTCCCTTGTTCC+TGG - chr4_2:10510910-10510929 None:intergenic 60.0%
CTGGGTGCAGCTTCAGTACC+TGG - chr4_2:10510891-10510910 None:intergenic 60.0%
!! CAGGTACTGAAGCTGCACCC+AGG + chr4_2:10510889-10510908 Msa0588360:intron 60.0%
GCAGCTGCTCCCTTGTTCCT+GGG - chr4_2:10510909-10510928 None:intergenic 60.0%
AGCAGCTGCTCCCTTGTTCC+TGG - chr4_2:10510910-10510929 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 10509264 10511196 10509264 ID=Msa0588360;Name=Msa0588360
chr4_2 mRNA 10509264 10511196 10509264 ID=Msa0588360-mRNA-1;Parent=Msa0588360;Name=Msa0588360-mRNA-1;_AED=0.03;_eAED=0.03;_QI=159|1|1|1|1|1|4|258|95
chr4_2 exon 10509264 10509425 10509264 ID=Msa0588360-mRNA-1:exon:2970;Parent=Msa0588360-mRNA-1
chr4_2 exon 10509519 10509654 10509519 ID=Msa0588360-mRNA-1:exon:2971;Parent=Msa0588360-mRNA-1
chr4_2 exon 10509822 10509923 10509822 ID=Msa0588360-mRNA-1:exon:2972;Parent=Msa0588360-mRNA-1
chr4_2 exon 10510892 10511196 10510892 ID=Msa0588360-mRNA-1:exon:2973;Parent=Msa0588360-mRNA-1
chr4_2 five_prime_UTR 10509264 10509422 10509264 ID=Msa0588360-mRNA-1:five_prime_utr;Parent=Msa0588360-mRNA-1
chr4_2 CDS 10509423 10509425 10509423 ID=Msa0588360-mRNA-1:cds;Parent=Msa0588360-mRNA-1
chr4_2 CDS 10509519 10509654 10509519 ID=Msa0588360-mRNA-1:cds;Parent=Msa0588360-mRNA-1
chr4_2 CDS 10509822 10509923 10509822 ID=Msa0588360-mRNA-1:cds;Parent=Msa0588360-mRNA-1
chr4_2 CDS 10510892 10510938 10510892 ID=Msa0588360-mRNA-1:cds;Parent=Msa0588360-mRNA-1
chr4_2 three_prime_UTR 10510939 10511196 10510939 ID=Msa0588360-mRNA-1:three_prime_utr;Parent=Msa0588360-mRNA-1
Gene Sequence

>Msa0588360

ATGGGTAAGGGAACAGGCAGTTTCGGTAAGAGAAGGAACAAGACCCACACACTCTGTGTTAGGTGTGGCCGTCGCAGTTTCCATCTCCAGAAGAGTCGCTGCTCAGCATGTGCTTATCCAGCTGCACGTGTCAGGAAATATAACTGGAGTGAGAAGGCTATTAGGAGAAAGACCACTGGAACTGGTAGGATGAGGTACTTGAGGAACGTGCCTCGCAGATTCAAGAGTGGATTCAGAGAAGGTACTGAAGCTGCACCCAGGAACAAGGGAGCAGCTGCTTCTACCTAA

Protein sequence

>Msa0588360

MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARVRKYNWSEKAIRRKTTGTGRMRYLRNVPRRFKSGFREGTEAAPRNKGAAAST*