AlfalfaGEDB | Msa0588360

M. sativa cultivar zhongmu-4 / Msa0588360

KEGG: K02922
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF01907.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0588360	XP_013442541.1	100.000	95	0	0	1	95	1	95	3.43e-61	191

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0588360	sp\|Q43292\|RL372_ARATH	89.362	94	10	0	1	94	1	94	1.69e-56	172

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa0588360	0.865845	4.393338e-65	-8.615850e-47
Msa0002750	Msa0588360	0.875257	3.553102e-68	-8.615850e-47
Msa0002790	Msa0588360	0.866680	2.388161e-65	-8.615850e-47
Msa0003720	Msa0588360	0.848835	4.758869e-60	-8.615850e-47
Msa0003780	Msa0588360	0.851011	1.171275e-60	-8.615850e-47
Msa0006380	Msa0588360	0.817209	3.713236e-52	-8.615850e-47
Msa0011960	Msa0588360	0.810932	9.012684e-51	-8.615850e-47
Msa0020390	Msa0588360	0.818081	2.361592e-52	-8.615850e-47
Msa0022970	Msa0588360	0.828540	8.494191e-55	-8.615850e-47
Msa0025730	Msa0588360	0.807859	4.113673e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0588360	MtrunA17_Chr4g0004631	100.000	95	0	0	1	95	1	95	3.16e-65	191
Msa0588360	MtrunA17_Chr2g0331701	96.809	94	3	0	1	94	1	94	1.10e-62	184

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0588360	AT1G52300.1	89.362	94	10	1	94	1	94	1.72e-57	172
Msa0588360	AT3G16080.1	88.298	94	11	1	94	1	94	4.23e-57	171
Msa0588360	AT1G15250.2	87.368	95	12	1	95	1	95	7.56e-57	170
Msa0588360	AT1G15250.1	87.368	95	12	1	95	1	95	7.56e-57	170
Msa0588360	AT3G16080.2	93.333	45	3	1	45	1	45	9.79e-25	89.0

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Find 48 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATGTGACTTGAGTTGGC+CGG	0.589352	4_2:+10511174	Msa0588360:three_prime_UTR
AAGCAATGTTCCAAAGACTT+AGG	0.510606	4_2:-10510934	None:intergenic
AATCCACTCTTGAATCTGCG+AGG	0.695196	4_2:-10509893	None:intergenic
AATTTATATATGAACTCAAA+TGG	0.404538	4_2:-10509332	None:intergenic
ACAAAATACTCATGGAAACA+AGG	0.598048	4_2:-10511145	None:intergenic
ACACCTAACACAGAGTGTGT+GGG	0.685746	4_2:-10509559	None:intergenic
ACTGGAGTGAGAAGGCTATT+AGG	0.322324	4_2:+10509825	Msa0588360:CDS
AGACCCACACACTCTGTGTT+AGG	0.433282	4_2:+10509556	Msa0588360:CDS
AGCAGCGACTCTTCTGGAGA+TGG	0.555977	4_2:-10509596	None:intergenic
AGCAGCTGCTCCCTTGTTCC+TGG	0.247813	4_2:-10510907	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCAAGTAAGGATCAAACAT+TGG	-	chr4_2:10509478-10509497	None:intergenic	30.0%
ATTGTGTGATTTCAGATAAC+TGG	+	chr4_2:10509807-10509826	Msa0588360:intron	30.0%
AATTTAGATCAGTTGGATCT+TGG	+	chr4_2:10510582-10510601	Msa0588360:intron	30.0%
TTAGTATGATTGTATGGAAG+TGG	+	chr4_2:10510796-10510815	Msa0588360:intron	30.0%
ACAAAATACTCATGGAAACA+AGG	-	chr4_2:10511148-10511167	None:intergenic	30.0%
TTATAACATGTGACTTGAGT+TGG	+	chr4_2:10511170-10511189	Msa0588360:three_prime_UTR	30.0%
TTCAAGTAAGGATCAAACAT+TGG	-	chr4_2:10509478-10509497	None:intergenic	30.0%
ATTGTGTGATTTCAGATAAC+TGG	+	chr4_2:10509807-10509826	Msa0588360:intron	30.0%
AATTTAGATCAGTTGGATCT+TGG	+	chr4_2:10510582-10510601	Msa0588360:intron	30.0%
TTAGTATGATTGTATGGAAG+TGG	+	chr4_2:10510796-10510815	Msa0588360:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	10509264	10511196	10509264	ID=Msa0588360;Name=Msa0588360
chr4_2	mRNA	10509264	10511196	10509264	ID=Msa0588360-mRNA-1;Parent=Msa0588360;Name=Msa0588360-mRNA-1;_AED=0.03;_eAED=0.03;_QI=159\|1\|1\|1\|1\|1\|4\|258\|95
chr4_2	exon	10509264	10509425	10509264	ID=Msa0588360-mRNA-1:exon:2970;Parent=Msa0588360-mRNA-1
chr4_2	exon	10509519	10509654	10509519	ID=Msa0588360-mRNA-1:exon:2971;Parent=Msa0588360-mRNA-1
chr4_2	exon	10509822	10509923	10509822	ID=Msa0588360-mRNA-1:exon:2972;Parent=Msa0588360-mRNA-1
chr4_2	exon	10510892	10511196	10510892	ID=Msa0588360-mRNA-1:exon:2973;Parent=Msa0588360-mRNA-1
chr4_2	five_prime_UTR	10509264	10509422	10509264	ID=Msa0588360-mRNA-1:five_prime_utr;Parent=Msa0588360-mRNA-1
chr4_2	CDS	10509423	10509425	10509423	ID=Msa0588360-mRNA-1:cds;Parent=Msa0588360-mRNA-1
chr4_2	CDS	10509519	10509654	10509519	ID=Msa0588360-mRNA-1:cds;Parent=Msa0588360-mRNA-1
chr4_2	CDS	10509822	10509923	10509822	ID=Msa0588360-mRNA-1:cds;Parent=Msa0588360-mRNA-1
chr4_2	CDS	10510892	10510938	10510892	ID=Msa0588360-mRNA-1:cds;Parent=Msa0588360-mRNA-1
chr4_2	three_prime_UTR	10510939	10511196	10510939	ID=Msa0588360-mRNA-1:three_prime_utr;Parent=Msa0588360-mRNA-1

Gene Sequence	>Msa0588360 ATGGGTAAGGGAACAGGCAGTTTCGGTAAGAGAAGGAACAAGACCCACACACTCTGTGTTAGGTGTGGCCGTCGCAGTTTCCATCTCCAGAAGAGTCGCTGCTCAGCATGTGCTTATCCAGCTGCACGTGTCAGGAAATATAACTGGAGTGAGAAGGCTATTAGGAGAAAGACCACTGGAACTGGTAGGATGAGGTACTTGAGGAACGTGCCTCGCAGATTCAAGAGTGGATTCAGAGAAGGTACTGAAGCTGCACCCAGGAACAAGGGAGCAGCTGCTTCTACCTAA
Protein sequence	>Msa0588360 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARVRKYNWSEKAIRRKTTGTGRMRYLRNVPRRFKSGFREGTEAAPRNKGAAAST*