Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028800 | sp|Q8LGS1|MARD1_ARATH | 40.377 | 265 | 125 | 11 | 2 | 236 | 1 | 262 | 1.30e-46 | 158 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028800 | Msa0076400 | 0.816262 | 6.055912e-52 | -8.615850e-47 |
| Msa0028800 | Msa0099590 | 0.804893 | 1.736303e-49 | -8.615850e-47 |
| Msa0028800 | Msa0148200 | 0.807028 | 6.173992e-50 | -8.615850e-47 |
| Msa0028800 | Msa0791630 | 0.953778 | 1.292578e-111 | -8.615850e-47 |
| Msa0028800 | Msa1043550 | 0.809984 | 1.444150e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028800 | MtrunA17_Chr1g0185331 | 94.515 | 237 | 13 | 0 | 1 | 237 | 1 | 237 | 5.67e-169 | 465 |
| Msa0028800 | MtrunA17_Chr7g0260011 | 56.977 | 258 | 88 | 8 | 1 | 236 | 1 | 257 | 1.48e-82 | 247 |
| Msa0028800 | MtrunA17_Chr1g0205211 | 55.140 | 107 | 36 | 2 | 141 | 235 | 180 | 286 | 1.02e-31 | 117 |
| Msa0028800 | MtrunA17_Chr1g0205211 | 44.348 | 115 | 50 | 6 | 30 | 136 | 12 | 120 | 2.27e-16 | 76.3 |
| Msa0028800 | MtrunA17_Chr3g0138651 | 47.826 | 115 | 36 | 3 | 144 | 234 | 280 | 394 | 1.83e-24 | 100 |
| Msa0028800 | MtrunA17_Chr1g0148411 | 48.214 | 112 | 37 | 3 | 144 | 234 | 204 | 315 | 5.99e-24 | 98.2 |
| Msa0028800 | MtrunA17_Chr2g0331941 | 47.321 | 112 | 48 | 4 | 125 | 226 | 240 | 350 | 5.84e-21 | 90.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028800 | AT3G63210.1 | 40.377 | 265 | 125 | 11 | 2 | 236 | 1 | 262 | 1.33e-47 | 158 |
| Msa0028800 | AT3G22550.1 | 37.943 | 282 | 106 | 11 | 2 | 234 | 1 | 262 | 5.21e-45 | 152 |
| Msa0028800 | AT5G11460.1 | 28.464 | 267 | 100 | 8 | 52 | 230 | 44 | 307 | 1.18e-24 | 100 |
| Msa0028800 | AT2G25690.2 | 44.565 | 92 | 42 | 3 | 153 | 236 | 218 | 308 | 2.13e-17 | 80.1 |
| Msa0028800 | AT2G25690.1 | 44.565 | 92 | 42 | 3 | 153 | 236 | 218 | 308 | 2.13e-17 | 80.1 |
| Msa0028800 | AT5G20700.1 | 31.579 | 209 | 95 | 10 | 54 | 234 | 33 | 221 | 1.23e-11 | 63.2 |
| Msa0028800 | AT1G53885.1 | 37.500 | 64 | 40 | 0 | 171 | 234 | 19 | 82 | 4.70e-11 | 58.9 |
| Msa0028800 | AT1G53903.1 | 37.500 | 64 | 40 | 0 | 171 | 234 | 19 | 82 | 4.70e-11 | 58.9 |
| Msa0028800 | AT5G49120.1 | 48.889 | 45 | 23 | 0 | 193 | 237 | 67 | 111 | 8.34e-11 | 58.9 |
Find 31 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTACATGTACTACAATATT+TGG | 0.212149 | 1_1:-53854200 | None:intergenic |
| ACTACAATACCATCTCTATT+TGG | 0.228214 | 1_1:+53854461 | Msa0028800:CDS |
| CAAAAGACATCTTCATTTAC+AGG | 0.305275 | 1_1:+53855008 | Msa0028800:CDS |
| GCTACAAACTTTGTTCCTAT+TGG | 0.308716 | 1_1:-53854612 | None:intergenic |
| CACACAAATAGAACTTAAAA+AGG | 0.313516 | 1_1:-53855245 | None:intergenic |
| TTCACCCATCAAACTTTGTT+TGG | 0.353951 | 1_1:-53854417 | None:intergenic |
| AAATGAAAATCTCTATAGTT+TGG | 0.385441 | 1_1:-53854488 | None:intergenic |
| ACCATTGGTCTTGGTCTTGT+TGG | 0.396502 | 1_1:+53854659 | Msa0028800:CDS |
| ACATGACTGAATAATATATA+TGG | 0.397378 | 1_1:-53854081 | None:intergenic |
| TTCCTATTGGTAATTGAGAA+AGG | 0.412049 | 1_1:-53854599 | None:intergenic |
| ATCTCTATTTGCAAGGTTGA+AGG | 0.413036 | 1_1:-53855277 | None:intergenic |
| ATCCTTTCTCAATTACCAAT+AGG | 0.418780 | 1_1:+53854597 | Msa0028800:CDS |
| AATTCAGTACACTTTCACTT+AGG | 0.454438 | 1_1:+53854274 | Msa0028800:five_prime_UTR |
| TGTTCTTAGTTTGAGTGAGA+TGG | 0.477236 | 1_1:+53854811 | Msa0028800:CDS |
| AGTCACCAAACAAAGTTTGA+TGG | 0.487954 | 1_1:+53854412 | Msa0028800:CDS |
| ATTGAAAAGTGTTTCACTTG+AGG | 0.495448 | 1_1:-53854315 | None:intergenic |
| AAAGTGTACTGAATTGTGTT+TGG | 0.502524 | 1_1:-53854266 | None:intergenic |
| TCAAACATGGAAGGTGGTAG+AGG | 0.507899 | 1_1:-53854776 | None:intergenic |
| GGAACAAAGTTTGTAGCTCA+AGG | 0.520520 | 1_1:+53854618 | Msa0028800:CDS |
| TACACATGTGTGATATCTCA+TGG | 0.544339 | 1_1:+53854848 | Msa0028800:CDS |
| CTTGCAAATAGAGATAAAAG+AGG | 0.555159 | 1_1:+53855285 | Msa0028800:three_prime_UTR |
| GTCACCAAACAAAGTTTGAT+GGG | 0.561348 | 1_1:+53854413 | Msa0028800:CDS |
| TTTGTGTCAAGAATTGATGT+TGG | 0.576565 | 1_1:-53854554 | None:intergenic |
| TCTATTTGCAAGGTTGAAGG+AGG | 0.594942 | 1_1:-53855274 | None:intergenic |
| TATATTTGATAATTGTGTTG+TGG | 0.597437 | 1_1:+53854892 | Msa0028800:CDS |
| GAACAAAGTTTGTAGCTCAA+GGG | 0.606947 | 1_1:+53854619 | Msa0028800:CDS |
| AACATGGAAGGTGGTAGAGG+AGG | 0.614545 | 1_1:-53854773 | None:intergenic |
| TTTGGTGAACCAAATAGAGA+TGG | 0.621510 | 1_1:-53854470 | None:intergenic |
| ACCAACAAGACCAAGACCAA+TGG | 0.643171 | 1_1:-53854660 | None:intergenic |
| TGTGACTCAAACATGGAAGG+TGG | 0.643194 | 1_1:-53854782 | None:intergenic |
| AGAATGTAGACACAAAGAGA+TGG | 0.662022 | 1_1:+53855162 | Msa0028800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATATATATGGCTTTTAA+AGG | - | chr1_1:53854074-53854093 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTTTGCAG+AGG | + | chr1_1:53855118-53855137 | Msa0028800:intron | 15.0% |
| !!! | ATAATATATATGGCTTTTAA+AGG | - | chr1_1:53854074-53854093 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTTTGCAG+AGG | + | chr1_1:53855118-53855137 | Msa0028800:intron | 15.0% |
| !! | ACATGACTGAATAATATATA+TGG | - | chr1_1:53854084-53854103 | None:intergenic | 20.0% |
| !!! | ATTGTAGTGAAATTTTGATT+TGG | - | chr1_1:53854449-53854468 | None:intergenic | 20.0% |
| !! | AAATGAAAATCTCTATAGTT+TGG | - | chr1_1:53854491-53854510 | None:intergenic | 20.0% |
| !! | AGTAATAGAAAAATTCTCTT+TGG | + | chr1_1:53854728-53854747 | Msa0028800:CDS | 20.0% |
| !!! | CAAATATATGAGTTGTTTTT+GGG | - | chr1_1:53854880-53854899 | None:intergenic | 20.0% |
| !!! | TCAAATATATGAGTTGTTTT+TGG | - | chr1_1:53854881-53854900 | None:intergenic | 20.0% |
| !!! | TATATTTGATAATTGTGTTG+TGG | + | chr1_1:53854892-53854911 | Msa0028800:CDS | 20.0% |
| !! | ACATGACTGAATAATATATA+TGG | - | chr1_1:53854084-53854103 | None:intergenic | 20.0% |
| !!! | ATTGTAGTGAAATTTTGATT+TGG | - | chr1_1:53854449-53854468 | None:intergenic | 20.0% |
| !! | AAATGAAAATCTCTATAGTT+TGG | - | chr1_1:53854491-53854510 | None:intergenic | 20.0% |
| !! | AGTAATAGAAAAATTCTCTT+TGG | + | chr1_1:53854728-53854747 | Msa0028800:CDS | 20.0% |
| !!! | CAAATATATGAGTTGTTTTT+GGG | - | chr1_1:53854880-53854899 | None:intergenic | 20.0% |
| !!! | TCAAATATATGAGTTGTTTT+TGG | - | chr1_1:53854881-53854900 | None:intergenic | 20.0% |
| !!! | TATATTTGATAATTGTGTTG+TGG | + | chr1_1:53854892-53854911 | Msa0028800:CDS | 20.0% |
| ! | AAAGAAAGAGAAGAAAAAGA+AGG | - | chr1_1:53854134-53854153 | None:intergenic | 25.0% |
| ! | AAAGTAGATTCAAAAACCAT+TGG | + | chr1_1:53854644-53854663 | Msa0028800:CDS | 25.0% |
| !!! | TGATCAGAATTTTGATGAAA+AGG | - | chr1_1:53854701-53854720 | None:intergenic | 25.0% |
| ! | CACACAAATAGAACTTAAAA+AGG | - | chr1_1:53855248-53855267 | None:intergenic | 25.0% |
| ! | AAAGAAAGAGAAGAAAAAGA+AGG | - | chr1_1:53854134-53854153 | None:intergenic | 25.0% |
| ! | AAAGTAGATTCAAAAACCAT+TGG | + | chr1_1:53854644-53854663 | Msa0028800:CDS | 25.0% |
| !!! | TGATCAGAATTTTGATGAAA+AGG | - | chr1_1:53854701-53854720 | None:intergenic | 25.0% |
| ! | CACACAAATAGAACTTAAAA+AGG | - | chr1_1:53855248-53855267 | None:intergenic | 25.0% |
| ! | AAGAAGGAAACTTTTGACAT+GGG | - | chr1_1:53854118-53854137 | None:intergenic | 30.0% |
| ! | AAAGAAGGAAACTTTTGACA+TGG | - | chr1_1:53854119-53854138 | None:intergenic | 30.0% |
| GGTACATGTACTACAATATT+TGG | - | chr1_1:53854203-53854222 | None:intergenic | 30.0% | |
| ! | GAAAAAGCATGATTTAGTAG+TGG | - | chr1_1:53854224-53854243 | None:intergenic | 30.0% |
| AAAGTGTACTGAATTGTGTT+TGG | - | chr1_1:53854269-53854288 | None:intergenic | 30.0% | |
| AATTCAGTACACTTTCACTT+AGG | + | chr1_1:53854274-53854293 | Msa0028800:five_prime_UTR | 30.0% | |
| !! | ATTGAAAAGTGTTTCACTTG+AGG | - | chr1_1:53854318-53854337 | None:intergenic | 30.0% |
| ACTACAATACCATCTCTATT+TGG | + | chr1_1:53854461-53854480 | Msa0028800:CDS | 30.0% | |
| TTTGTGTCAAGAATTGATGT+TGG | - | chr1_1:53854557-53854576 | None:intergenic | 30.0% | |
| ! | TGAGAAAGGATTTTCAAATG+AGG | - | chr1_1:53854588-53854607 | None:intergenic | 30.0% |
| ATCCTTTCTCAATTACCAAT+AGG | + | chr1_1:53854597-53854616 | Msa0028800:CDS | 30.0% | |
| ! | TTCCTATTGGTAATTGAGAA+AGG | - | chr1_1:53854602-53854621 | None:intergenic | 30.0% |
| !!! | ACTTTTTTGTGACTCAAACA+TGG | - | chr1_1:53854792-53854811 | None:intergenic | 30.0% |
| !!! | ATATGAGTTGTTTTTGGGTT+TGG | - | chr1_1:53854875-53854894 | None:intergenic | 30.0% |
| AAAAAGAGTGAGGACTATTA+GGG | - | chr1_1:53854937-53854956 | None:intergenic | 30.0% | |
| AAATTCAGTGAAAAAGAGTG+AGG | - | chr1_1:53854947-53854966 | None:intergenic | 30.0% | |
| CAAAAGACATCTTCATTTAC+AGG | + | chr1_1:53855008-53855027 | Msa0028800:CDS | 30.0% | |
| TACTTGAGCAAAGCTTATTA+AGG | + | chr1_1:53855076-53855095 | Msa0028800:intron | 30.0% | |
| !! | ATTAAGGAGCATTAACTTGA+TGG | + | chr1_1:53855092-53855111 | Msa0028800:intron | 30.0% |
| ! | CTCTTTTATCTCTATTTGCA+AGG | - | chr1_1:53855287-53855306 | None:intergenic | 30.0% |
| CTTGCAAATAGAGATAAAAG+AGG | + | chr1_1:53855285-53855304 | Msa0028800:three_prime_UTR | 30.0% | |
| ! | AAGAAGGAAACTTTTGACAT+GGG | - | chr1_1:53854118-53854137 | None:intergenic | 30.0% |
| ! | AAAGAAGGAAACTTTTGACA+TGG | - | chr1_1:53854119-53854138 | None:intergenic | 30.0% |
| GGTACATGTACTACAATATT+TGG | - | chr1_1:53854203-53854222 | None:intergenic | 30.0% | |
| ! | GAAAAAGCATGATTTAGTAG+TGG | - | chr1_1:53854224-53854243 | None:intergenic | 30.0% |
| AAAGTGTACTGAATTGTGTT+TGG | - | chr1_1:53854269-53854288 | None:intergenic | 30.0% | |
| AATTCAGTACACTTTCACTT+AGG | + | chr1_1:53854274-53854293 | Msa0028800:five_prime_UTR | 30.0% | |
| !! | ATTGAAAAGTGTTTCACTTG+AGG | - | chr1_1:53854318-53854337 | None:intergenic | 30.0% |
| ACTACAATACCATCTCTATT+TGG | + | chr1_1:53854461-53854480 | Msa0028800:CDS | 30.0% | |
| TTTGTGTCAAGAATTGATGT+TGG | - | chr1_1:53854557-53854576 | None:intergenic | 30.0% | |
| ! | TGAGAAAGGATTTTCAAATG+AGG | - | chr1_1:53854588-53854607 | None:intergenic | 30.0% |
| ATCCTTTCTCAATTACCAAT+AGG | + | chr1_1:53854597-53854616 | Msa0028800:CDS | 30.0% | |
| ! | TTCCTATTGGTAATTGAGAA+AGG | - | chr1_1:53854602-53854621 | None:intergenic | 30.0% |
| !!! | ACTTTTTTGTGACTCAAACA+TGG | - | chr1_1:53854792-53854811 | None:intergenic | 30.0% |
| !!! | ATATGAGTTGTTTTTGGGTT+TGG | - | chr1_1:53854875-53854894 | None:intergenic | 30.0% |
| AAAAAGAGTGAGGACTATTA+GGG | - | chr1_1:53854937-53854956 | None:intergenic | 30.0% | |
| AAATTCAGTGAAAAAGAGTG+AGG | - | chr1_1:53854947-53854966 | None:intergenic | 30.0% | |
| CAAAAGACATCTTCATTTAC+AGG | + | chr1_1:53855008-53855027 | Msa0028800:CDS | 30.0% | |
| TACTTGAGCAAAGCTTATTA+AGG | + | chr1_1:53855076-53855095 | Msa0028800:intron | 30.0% | |
| !! | ATTAAGGAGCATTAACTTGA+TGG | + | chr1_1:53855092-53855111 | Msa0028800:intron | 30.0% |
| ! | CTCTTTTATCTCTATTTGCA+AGG | - | chr1_1:53855287-53855306 | None:intergenic | 30.0% |
| CTTGCAAATAGAGATAAAAG+AGG | + | chr1_1:53855285-53855304 | Msa0028800:three_prime_UTR | 30.0% | |
| AGTCACCAAACAAAGTTTGA+TGG | + | chr1_1:53854412-53854431 | Msa0028800:CDS | 35.0% | |
| GTCACCAAACAAAGTTTGAT+GGG | + | chr1_1:53854413-53854432 | Msa0028800:CDS | 35.0% | |
| TTCACCCATCAAACTTTGTT+TGG | - | chr1_1:53854420-53854439 | None:intergenic | 35.0% | |
| TTTGGTGAACCAAATAGAGA+TGG | - | chr1_1:53854473-53854492 | None:intergenic | 35.0% | |
| ACTTCCAAAAAATCTCTCAC+TGG | + | chr1_1:53854512-53854531 | Msa0028800:CDS | 35.0% | |
| !!! | AGTTCCAGTGAGAGATTTTT+TGG | - | chr1_1:53854519-53854538 | None:intergenic | 35.0% |
| GCTACAAACTTTGTTCCTAT+TGG | - | chr1_1:53854615-53854634 | None:intergenic | 35.0% | |
| GAACAAAGTTTGTAGCTCAA+GGG | + | chr1_1:53854619-53854638 | Msa0028800:CDS | 35.0% | |
| ! | GATTCAAAAACCATTGGTCT+TGG | + | chr1_1:53854650-53854669 | Msa0028800:CDS | 35.0% |
| ! | TTTTGTGACTCAAACATGGA+AGG | - | chr1_1:53854788-53854807 | None:intergenic | 35.0% |
| ! | TGTTCTTAGTTTGAGTGAGA+TGG | + | chr1_1:53854811-53854830 | Msa0028800:CDS | 35.0% |
| TACACATGTGTGATATCTCA+TGG | + | chr1_1:53854848-53854867 | Msa0028800:CDS | 35.0% | |
| GAAAAAGAGTGAGGACTATT+AGG | - | chr1_1:53854938-53854957 | None:intergenic | 35.0% | |
| AGAATGTAGACACAAAGAGA+TGG | + | chr1_1:53855162-53855181 | Msa0028800:CDS | 35.0% | |
| ATCTCTATTTGCAAGGTTGA+AGG | - | chr1_1:53855280-53855299 | None:intergenic | 35.0% | |
| TGTGCATGAAAATCAAACGT+TGG | - | chr1_1:53854030-53854049 | None:intergenic | 35.0% | |
| AGTCACCAAACAAAGTTTGA+TGG | + | chr1_1:53854412-53854431 | Msa0028800:CDS | 35.0% | |
| GTCACCAAACAAAGTTTGAT+GGG | + | chr1_1:53854413-53854432 | Msa0028800:CDS | 35.0% | |
| TTCACCCATCAAACTTTGTT+TGG | - | chr1_1:53854420-53854439 | None:intergenic | 35.0% | |
| TTTGGTGAACCAAATAGAGA+TGG | - | chr1_1:53854473-53854492 | None:intergenic | 35.0% | |
| ACTTCCAAAAAATCTCTCAC+TGG | + | chr1_1:53854512-53854531 | Msa0028800:CDS | 35.0% | |
| !!! | AGTTCCAGTGAGAGATTTTT+TGG | - | chr1_1:53854519-53854538 | None:intergenic | 35.0% |
| GCTACAAACTTTGTTCCTAT+TGG | - | chr1_1:53854615-53854634 | None:intergenic | 35.0% | |
| GAACAAAGTTTGTAGCTCAA+GGG | + | chr1_1:53854619-53854638 | Msa0028800:CDS | 35.0% | |
| ! | GATTCAAAAACCATTGGTCT+TGG | + | chr1_1:53854650-53854669 | Msa0028800:CDS | 35.0% |
| ! | TTTTGTGACTCAAACATGGA+AGG | - | chr1_1:53854788-53854807 | None:intergenic | 35.0% |
| ! | TGTTCTTAGTTTGAGTGAGA+TGG | + | chr1_1:53854811-53854830 | Msa0028800:CDS | 35.0% |
| TACACATGTGTGATATCTCA+TGG | + | chr1_1:53854848-53854867 | Msa0028800:CDS | 35.0% | |
| GAAAAAGAGTGAGGACTATT+AGG | - | chr1_1:53854938-53854957 | None:intergenic | 35.0% | |
| AGAATGTAGACACAAAGAGA+TGG | + | chr1_1:53855162-53855181 | Msa0028800:CDS | 35.0% | |
| ATCTCTATTTGCAAGGTTGA+AGG | - | chr1_1:53855280-53855299 | None:intergenic | 35.0% | |
| GGAACAAAGTTTGTAGCTCA+AGG | + | chr1_1:53854618-53854637 | Msa0028800:CDS | 40.0% | |
| TCTATTTGCAAGGTTGAAGG+AGG | - | chr1_1:53855277-53855296 | None:intergenic | 40.0% | |
| GGAACAAAGTTTGTAGCTCA+AGG | + | chr1_1:53854618-53854637 | Msa0028800:CDS | 40.0% | |
| TCTATTTGCAAGGTTGAAGG+AGG | - | chr1_1:53855277-53855296 | None:intergenic | 40.0% | |
| !! | ACCATTGGTCTTGGTCTTGT+TGG | + | chr1_1:53854659-53854678 | Msa0028800:CDS | 45.0% |
| ACCAACAAGACCAAGACCAA+TGG | - | chr1_1:53854663-53854682 | None:intergenic | 45.0% | |
| TCAAACATGGAAGGTGGTAG+AGG | - | chr1_1:53854779-53854798 | None:intergenic | 45.0% | |
| TGTGACTCAAACATGGAAGG+TGG | - | chr1_1:53854785-53854804 | None:intergenic | 45.0% | |
| !! | ACCATTGGTCTTGGTCTTGT+TGG | + | chr1_1:53854659-53854678 | Msa0028800:CDS | 45.0% |
| ACCAACAAGACCAAGACCAA+TGG | - | chr1_1:53854663-53854682 | None:intergenic | 45.0% | |
| TCAAACATGGAAGGTGGTAG+AGG | - | chr1_1:53854779-53854798 | None:intergenic | 45.0% | |
| TGTGACTCAAACATGGAAGG+TGG | - | chr1_1:53854785-53854804 | None:intergenic | 45.0% | |
| AACATGGAAGGTGGTAGAGG+AGG | - | chr1_1:53854776-53854795 | None:intergenic | 50.0% | |
| AACATGGAAGGTGGTAGAGG+AGG | - | chr1_1:53854776-53854795 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 53854029 | 53855395 | 53854029 | ID=Msa0028800;Name=Msa0028800 |
| chr1_1 | mRNA | 53854029 | 53855395 | 53854029 | ID=Msa0028800-mRNA-1;Parent=Msa0028800;Name=Msa0028800-mRNA-1;_AED=0.04;_eAED=0.04;_QI=357|1|1|1|1|1|2|188|237 |
| chr1_1 | exon | 53854029 | 53855029 | 53854029 | ID=Msa0028800-mRNA-1:exon:15888;Parent=Msa0028800-mRNA-1 |
| chr1_1 | exon | 53855138 | 53855395 | 53855138 | ID=Msa0028800-mRNA-1:exon:15889;Parent=Msa0028800-mRNA-1 |
| chr1_1 | five_prime_UTR | 53854029 | 53854385 | 53854029 | ID=Msa0028800-mRNA-1:five_prime_utr;Parent=Msa0028800-mRNA-1 |
| chr1_1 | CDS | 53854386 | 53855029 | 53854386 | ID=Msa0028800-mRNA-1:cds;Parent=Msa0028800-mRNA-1 |
| chr1_1 | CDS | 53855138 | 53855207 | 53855138 | ID=Msa0028800-mRNA-1:cds;Parent=Msa0028800-mRNA-1 |
| chr1_1 | three_prime_UTR | 53855208 | 53855395 | 53855208 | ID=Msa0028800-mRNA-1:three_prime_utr;Parent=Msa0028800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
