Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791630 | XP_003590616.1 | 93.305 | 239 | 14 | 1 | 1 | 239 | 1 | 237 | 3.75e-162 | 458 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791630 | sp|Q8LGS1|MARD1_ARATH | 40.075 | 267 | 125 | 11 | 2 | 238 | 1 | 262 | 2.60e-46 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791630 | G7IDN1 | 93.305 | 239 | 14 | 1 | 1 | 239 | 1 | 237 | 1.79e-162 | 458 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028800 | Msa0791630 | 0.953778 | 1.292578e-111 | -8.615850e-47 |
| Msa0099590 | Msa0791630 | 0.808162 | 3.545675e-50 | -8.615850e-47 |
| Msa0791630 | Msa1043550 | 0.813556 | 2.411714e-51 | -8.615850e-47 |
| Msa0148200 | Msa0791630 | 0.821605 | 3.694678e-53 | -8.615850e-47 |
| Msa0520890 | Msa0791630 | 0.803086 | 4.121919e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791630 | MtrunA17_Chr1g0185331 | 93.305 | 239 | 14 | 1 | 1 | 239 | 1 | 237 | 3.45e-166 | 458 |
| Msa0791630 | MtrunA17_Chr7g0260011 | 56.371 | 259 | 90 | 8 | 1 | 238 | 1 | 257 | 9.03e-82 | 245 |
| Msa0791630 | MtrunA17_Chr1g0205211 | 55.140 | 107 | 36 | 2 | 143 | 237 | 180 | 286 | 1.06e-31 | 117 |
| Msa0791630 | MtrunA17_Chr1g0205211 | 43.590 | 117 | 50 | 7 | 30 | 138 | 12 | 120 | 1.15e-14 | 71.6 |
| Msa0791630 | MtrunA17_Chr3g0138651 | 47.826 | 115 | 36 | 3 | 146 | 236 | 280 | 394 | 2.01e-24 | 100 |
| Msa0791630 | MtrunA17_Chr1g0148411 | 48.214 | 112 | 37 | 3 | 146 | 236 | 204 | 315 | 6.56e-24 | 97.8 |
| Msa0791630 | MtrunA17_Chr2g0331941 | 47.321 | 112 | 48 | 4 | 127 | 228 | 240 | 350 | 6.12e-21 | 90.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791630 | AT3G63210.1 | 40.075 | 267 | 125 | 11 | 2 | 238 | 1 | 262 | 2.64e-47 | 157 |
| Msa0791630 | AT3G22550.1 | 37.456 | 283 | 108 | 11 | 2 | 236 | 1 | 262 | 3.34e-44 | 149 |
| Msa0791630 | AT5G11460.1 | 28.253 | 269 | 100 | 9 | 52 | 232 | 44 | 307 | 1.20e-22 | 94.7 |
| Msa0791630 | AT2G25690.2 | 44.565 | 92 | 42 | 3 | 155 | 238 | 218 | 308 | 2.33e-17 | 80.1 |
| Msa0791630 | AT2G25690.1 | 44.565 | 92 | 42 | 3 | 155 | 238 | 218 | 308 | 2.33e-17 | 80.1 |
| Msa0791630 | AT5G20700.1 | 32.227 | 211 | 93 | 11 | 54 | 236 | 33 | 221 | 2.82e-11 | 62.0 |
| Msa0791630 | AT1G53885.1 | 37.500 | 64 | 40 | 0 | 173 | 236 | 19 | 82 | 4.64e-11 | 59.3 |
| Msa0791630 | AT1G53903.1 | 37.500 | 64 | 40 | 0 | 173 | 236 | 19 | 82 | 4.64e-11 | 59.3 |
| Msa0791630 | AT5G49120.1 | 48.889 | 45 | 23 | 0 | 195 | 239 | 67 | 111 | 9.67e-11 | 58.9 |
Find 33 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTACATGTACTACAATATT+TGG | 0.212149 | 5_3:-2684437 | None:intergenic |
| ACTACAATACCATCTCTATT+TGG | 0.228214 | 5_3:+2684695 | Msa0791630:CDS |
| CAAAAGACATCTTCATTTAC+AGG | 0.305275 | 5_3:+2685248 | Msa0791630:CDS |
| GCTACAAACTTTGTTCCTAT+TGG | 0.308716 | 5_3:-2684846 | None:intergenic |
| CACACAAATAGAACTTAAAA+AGG | 0.313516 | 5_3:-2685483 | None:intergenic |
| GGTCTTGGTCTTGGTCTTGT+TGG | 0.321698 | 5_3:+2684899 | Msa0791630:CDS |
| TTCACCCATCAAACTTTGTT+TGG | 0.353951 | 5_3:-2684651 | None:intergenic |
| AAAACCATTGGTCTTGGTCT+TGG | 0.366469 | 5_3:+2684890 | Msa0791630:CDS |
| AAATGAAAATCTCTATAGTT+TGG | 0.385441 | 5_3:-2684722 | None:intergenic |
| ACATGACTGAATAATATATA+TGG | 0.397378 | 5_3:-2684319 | None:intergenic |
| TTCCTATTGGTAATTGAGAA+AGG | 0.411279 | 5_3:-2684833 | None:intergenic |
| ATCTCTATTTGCAAGGTTGA+AGG | 0.413036 | 5_3:-2685515 | None:intergenic |
| ACCCTTTCTCAATTACCAAT+AGG | 0.433358 | 5_3:+2684831 | Msa0791630:CDS |
| AATTCAGTACACTTTCACTT+AGG | 0.454438 | 5_3:+2684511 | Msa0791630:five_prime_UTR |
| TGTTCTTAGTTTGAGTGAGA+TGG | 0.477236 | 5_3:+2685051 | Msa0791630:CDS |
| AGTCACCAAACAAAGTTTGA+TGG | 0.487954 | 5_3:+2684646 | Msa0791630:CDS |
| TCCTATTGGTAATTGAGAAA+GGG | 0.489680 | 5_3:-2684832 | None:intergenic |
| ATTGAAAAGTGTTTCACTTG+AGG | 0.495448 | 5_3:-2684552 | None:intergenic |
| AAAGTGTACTGAATTGTGTT+TGG | 0.502524 | 5_3:-2684503 | None:intergenic |
| TCAAACATGGAAGGTGGTAG+AGG | 0.507899 | 5_3:-2685016 | None:intergenic |
| GGAACAAAGTTTGTAGCTCA+AGG | 0.520520 | 5_3:+2684852 | Msa0791630:CDS |
| TACACATGTGTGATATCTCA+TGG | 0.544339 | 5_3:+2685088 | Msa0791630:CDS |
| CTTGCAAATAGAGATAAAAG+AGG | 0.555159 | 5_3:+2685523 | Msa0791630:three_prime_UTR |
| GTCACCAAACAAAGTTTGAT+GGG | 0.561348 | 5_3:+2684647 | Msa0791630:CDS |
| TTTGTGTCAAGAATTGATGT+TGG | 0.576565 | 5_3:-2684788 | None:intergenic |
| TCTATTTGCAAGGTTGAAGG+AGG | 0.594942 | 5_3:-2685512 | None:intergenic |
| TATATTTGATAATTGTGTTG+TGG | 0.597437 | 5_3:+2685132 | Msa0791630:CDS |
| GAACAAAGTTTGTAGCTCAA+GGG | 0.606947 | 5_3:+2684853 | Msa0791630:CDS |
| AACATGGAAGGTGGTAGAGG+AGG | 0.614545 | 5_3:-2685013 | None:intergenic |
| TTTGGTGAACCAAATAGAGA+TGG | 0.621510 | 5_3:-2684704 | None:intergenic |
| TGTGACTCAAACATGGAAGG+TGG | 0.643194 | 5_3:-2685022 | None:intergenic |
| AAGACCAAGACCAAGACCAA+TGG | 0.659900 | 5_3:-2684894 | None:intergenic |
| AGAATGTAGACACAAAGAGA+TGG | 0.662022 | 5_3:+2685400 | Msa0791630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATATATATGGCTTTTAA+AGG | - | chr5_3:2684312-2684331 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTTTGCAG+AGG | + | chr5_3:2685356-2685375 | Msa0791630:intron | 15.0% |
| !!! | ATAATATATATGGCTTTTAA+AGG | - | chr5_3:2684312-2684331 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTTTGCAG+AGG | + | chr5_3:2685356-2685375 | Msa0791630:intron | 15.0% |
| !! | ACATGACTGAATAATATATA+TGG | - | chr5_3:2684322-2684341 | None:intergenic | 20.0% |
| !!! | ATTGTAGTGAAATTTTGATT+TGG | - | chr5_3:2684683-2684702 | None:intergenic | 20.0% |
| !! | AAATGAAAATCTCTATAGTT+TGG | - | chr5_3:2684725-2684744 | None:intergenic | 20.0% |
| !! | AGTAATAGAAAAATTCTCTT+TGG | + | chr5_3:2684968-2684987 | Msa0791630:CDS | 20.0% |
| !!! | CAAATATATGAGTTGTTTTT+GGG | - | chr5_3:2685120-2685139 | None:intergenic | 20.0% |
| !!! | TCAAATATATGAGTTGTTTT+TGG | - | chr5_3:2685121-2685140 | None:intergenic | 20.0% |
| !!! | TATATTTGATAATTGTGTTG+TGG | + | chr5_3:2685132-2685151 | Msa0791630:CDS | 20.0% |
| !! | ACATGACTGAATAATATATA+TGG | - | chr5_3:2684322-2684341 | None:intergenic | 20.0% |
| !!! | ATTGTAGTGAAATTTTGATT+TGG | - | chr5_3:2684683-2684702 | None:intergenic | 20.0% |
| !! | AAATGAAAATCTCTATAGTT+TGG | - | chr5_3:2684725-2684744 | None:intergenic | 20.0% |
| !! | AGTAATAGAAAAATTCTCTT+TGG | + | chr5_3:2684968-2684987 | Msa0791630:CDS | 20.0% |
| !!! | CAAATATATGAGTTGTTTTT+GGG | - | chr5_3:2685120-2685139 | None:intergenic | 20.0% |
| !!! | TCAAATATATGAGTTGTTTT+TGG | - | chr5_3:2685121-2685140 | None:intergenic | 20.0% |
| !!! | TATATTTGATAATTGTGTTG+TGG | + | chr5_3:2685132-2685151 | Msa0791630:CDS | 20.0% |
| ! | AAAGAAAGAGAAGAAAAAGA+AGG | - | chr5_3:2684371-2684390 | None:intergenic | 25.0% |
| ! | AAAGTAGATTCAAAAACCAT+TGG | + | chr5_3:2684878-2684897 | Msa0791630:CDS | 25.0% |
| !!! | TGATCAGAATTTTGATGAAA+AGG | - | chr5_3:2684941-2684960 | None:intergenic | 25.0% |
| ! | CACACAAATAGAACTTAAAA+AGG | - | chr5_3:2685486-2685505 | None:intergenic | 25.0% |
| ! | AAAGAAAGAGAAGAAAAAGA+AGG | - | chr5_3:2684371-2684390 | None:intergenic | 25.0% |
| ! | AAAGTAGATTCAAAAACCAT+TGG | + | chr5_3:2684878-2684897 | Msa0791630:CDS | 25.0% |
| !!! | TGATCAGAATTTTGATGAAA+AGG | - | chr5_3:2684941-2684960 | None:intergenic | 25.0% |
| ! | CACACAAATAGAACTTAAAA+AGG | - | chr5_3:2685486-2685505 | None:intergenic | 25.0% |
| ! | AAAGAAGGAAACTTTTGACA+TGG | - | chr5_3:2684356-2684375 | None:intergenic | 30.0% |
| GGTACATGTACTACAATATT+TGG | - | chr5_3:2684440-2684459 | None:intergenic | 30.0% | |
| ! | GAAAAAGCATGATTTAGTAG+TGG | - | chr5_3:2684461-2684480 | None:intergenic | 30.0% |
| AAAGTGTACTGAATTGTGTT+TGG | - | chr5_3:2684506-2684525 | None:intergenic | 30.0% | |
| AATTCAGTACACTTTCACTT+AGG | + | chr5_3:2684511-2684530 | Msa0791630:five_prime_UTR | 30.0% | |
| !! | ATTGAAAAGTGTTTCACTTG+AGG | - | chr5_3:2684555-2684574 | None:intergenic | 30.0% |
| ACTACAATACCATCTCTATT+TGG | + | chr5_3:2684695-2684714 | Msa0791630:CDS | 30.0% | |
| TTTGTGTCAAGAATTGATGT+TGG | - | chr5_3:2684791-2684810 | None:intergenic | 30.0% | |
| ! | TCCTATTGGTAATTGAGAAA+GGG | - | chr5_3:2684835-2684854 | None:intergenic | 30.0% |
| ! | TTCCTATTGGTAATTGAGAA+AGG | - | chr5_3:2684836-2684855 | None:intergenic | 30.0% |
| !!! | ACTTTTTTGTGACTCAAACA+TGG | - | chr5_3:2685032-2685051 | None:intergenic | 30.0% |
| !!! | ATATGAGTTGTTTTTGGGTT+TGG | - | chr5_3:2685115-2685134 | None:intergenic | 30.0% |
| AAAAAGAGTGAGGACTATTA+GGG | - | chr5_3:2685177-2685196 | None:intergenic | 30.0% | |
| AAATTCAGTGAAAAAGAGTG+AGG | - | chr5_3:2685187-2685206 | None:intergenic | 30.0% | |
| CAAAAGACATCTTCATTTAC+AGG | + | chr5_3:2685248-2685267 | Msa0791630:CDS | 30.0% | |
| ! | CTCTTTTATCTCTATTTGCA+AGG | - | chr5_3:2685525-2685544 | None:intergenic | 30.0% |
| CTTGCAAATAGAGATAAAAG+AGG | + | chr5_3:2685523-2685542 | Msa0791630:three_prime_UTR | 30.0% | |
| ! | AAAGAAGGAAACTTTTGACA+TGG | - | chr5_3:2684356-2684375 | None:intergenic | 30.0% |
| GGTACATGTACTACAATATT+TGG | - | chr5_3:2684440-2684459 | None:intergenic | 30.0% | |
| ! | GAAAAAGCATGATTTAGTAG+TGG | - | chr5_3:2684461-2684480 | None:intergenic | 30.0% |
| AAAGTGTACTGAATTGTGTT+TGG | - | chr5_3:2684506-2684525 | None:intergenic | 30.0% | |
| AATTCAGTACACTTTCACTT+AGG | + | chr5_3:2684511-2684530 | Msa0791630:five_prime_UTR | 30.0% | |
| !! | ATTGAAAAGTGTTTCACTTG+AGG | - | chr5_3:2684555-2684574 | None:intergenic | 30.0% |
| ACTACAATACCATCTCTATT+TGG | + | chr5_3:2684695-2684714 | Msa0791630:CDS | 30.0% | |
| TTTGTGTCAAGAATTGATGT+TGG | - | chr5_3:2684791-2684810 | None:intergenic | 30.0% | |
| ! | TCCTATTGGTAATTGAGAAA+GGG | - | chr5_3:2684835-2684854 | None:intergenic | 30.0% |
| ! | TTCCTATTGGTAATTGAGAA+AGG | - | chr5_3:2684836-2684855 | None:intergenic | 30.0% |
| !!! | ACTTTTTTGTGACTCAAACA+TGG | - | chr5_3:2685032-2685051 | None:intergenic | 30.0% |
| !!! | ATATGAGTTGTTTTTGGGTT+TGG | - | chr5_3:2685115-2685134 | None:intergenic | 30.0% |
| AAAAAGAGTGAGGACTATTA+GGG | - | chr5_3:2685177-2685196 | None:intergenic | 30.0% | |
| AAATTCAGTGAAAAAGAGTG+AGG | - | chr5_3:2685187-2685206 | None:intergenic | 30.0% | |
| CAAAAGACATCTTCATTTAC+AGG | + | chr5_3:2685248-2685267 | Msa0791630:CDS | 30.0% | |
| ! | CTCTTTTATCTCTATTTGCA+AGG | - | chr5_3:2685525-2685544 | None:intergenic | 30.0% |
| CTTGCAAATAGAGATAAAAG+AGG | + | chr5_3:2685523-2685542 | Msa0791630:three_prime_UTR | 30.0% | |
| AGTCACCAAACAAAGTTTGA+TGG | + | chr5_3:2684646-2684665 | Msa0791630:CDS | 35.0% | |
| GTCACCAAACAAAGTTTGAT+GGG | + | chr5_3:2684647-2684666 | Msa0791630:CDS | 35.0% | |
| TTCACCCATCAAACTTTGTT+TGG | - | chr5_3:2684654-2684673 | None:intergenic | 35.0% | |
| TTTGGTGAACCAAATAGAGA+TGG | - | chr5_3:2684707-2684726 | None:intergenic | 35.0% | |
| ACTTCCAAAAAATCTCTCAC+TGG | + | chr5_3:2684746-2684765 | Msa0791630:CDS | 35.0% | |
| !!! | AGTTCCAGTGAGAGATTTTT+TGG | - | chr5_3:2684753-2684772 | None:intergenic | 35.0% |
| ! | TGAGAAAGGGTTTTCAAATG+AGG | - | chr5_3:2684822-2684841 | None:intergenic | 35.0% |
| ACCCTTTCTCAATTACCAAT+AGG | + | chr5_3:2684831-2684850 | Msa0791630:CDS | 35.0% | |
| GCTACAAACTTTGTTCCTAT+TGG | - | chr5_3:2684849-2684868 | None:intergenic | 35.0% | |
| GAACAAAGTTTGTAGCTCAA+GGG | + | chr5_3:2684853-2684872 | Msa0791630:CDS | 35.0% | |
| ! | GATTCAAAAACCATTGGTCT+TGG | + | chr5_3:2684884-2684903 | Msa0791630:CDS | 35.0% |
| ! | TTTTGTGACTCAAACATGGA+AGG | - | chr5_3:2685028-2685047 | None:intergenic | 35.0% |
| ! | TGTTCTTAGTTTGAGTGAGA+TGG | + | chr5_3:2685051-2685070 | Msa0791630:CDS | 35.0% |
| TACACATGTGTGATATCTCA+TGG | + | chr5_3:2685088-2685107 | Msa0791630:CDS | 35.0% | |
| GAAAAAGAGTGAGGACTATT+AGG | - | chr5_3:2685178-2685197 | None:intergenic | 35.0% | |
| !! | TACTTGAGCAAAGCTTGTTA+AGG | + | chr5_3:2685316-2685335 | Msa0791630:intron | 35.0% |
| !! | GTTAAGGAGCATTAACTTGA+TGG | + | chr5_3:2685332-2685351 | Msa0791630:intron | 35.0% |
| AGAATGTAGACACAAAGAGA+TGG | + | chr5_3:2685400-2685419 | Msa0791630:CDS | 35.0% | |
| ATCTCTATTTGCAAGGTTGA+AGG | - | chr5_3:2685518-2685537 | None:intergenic | 35.0% | |
| TGTGCATGAAAATCAAACGT+TGG | - | chr5_3:2684268-2684287 | None:intergenic | 35.0% | |
| AGTCACCAAACAAAGTTTGA+TGG | + | chr5_3:2684646-2684665 | Msa0791630:CDS | 35.0% | |
| GTCACCAAACAAAGTTTGAT+GGG | + | chr5_3:2684647-2684666 | Msa0791630:CDS | 35.0% | |
| TTCACCCATCAAACTTTGTT+TGG | - | chr5_3:2684654-2684673 | None:intergenic | 35.0% | |
| TTTGGTGAACCAAATAGAGA+TGG | - | chr5_3:2684707-2684726 | None:intergenic | 35.0% | |
| ACTTCCAAAAAATCTCTCAC+TGG | + | chr5_3:2684746-2684765 | Msa0791630:CDS | 35.0% | |
| !!! | AGTTCCAGTGAGAGATTTTT+TGG | - | chr5_3:2684753-2684772 | None:intergenic | 35.0% |
| ! | TGAGAAAGGGTTTTCAAATG+AGG | - | chr5_3:2684822-2684841 | None:intergenic | 35.0% |
| ACCCTTTCTCAATTACCAAT+AGG | + | chr5_3:2684831-2684850 | Msa0791630:CDS | 35.0% | |
| GCTACAAACTTTGTTCCTAT+TGG | - | chr5_3:2684849-2684868 | None:intergenic | 35.0% | |
| GAACAAAGTTTGTAGCTCAA+GGG | + | chr5_3:2684853-2684872 | Msa0791630:CDS | 35.0% | |
| ! | GATTCAAAAACCATTGGTCT+TGG | + | chr5_3:2684884-2684903 | Msa0791630:CDS | 35.0% |
| ! | TTTTGTGACTCAAACATGGA+AGG | - | chr5_3:2685028-2685047 | None:intergenic | 35.0% |
| ! | TGTTCTTAGTTTGAGTGAGA+TGG | + | chr5_3:2685051-2685070 | Msa0791630:CDS | 35.0% |
| TACACATGTGTGATATCTCA+TGG | + | chr5_3:2685088-2685107 | Msa0791630:CDS | 35.0% | |
| GAAAAAGAGTGAGGACTATT+AGG | - | chr5_3:2685178-2685197 | None:intergenic | 35.0% | |
| !! | TACTTGAGCAAAGCTTGTTA+AGG | + | chr5_3:2685316-2685335 | Msa0791630:intron | 35.0% |
| !! | GTTAAGGAGCATTAACTTGA+TGG | + | chr5_3:2685332-2685351 | Msa0791630:intron | 35.0% |
| AGAATGTAGACACAAAGAGA+TGG | + | chr5_3:2685400-2685419 | Msa0791630:CDS | 35.0% | |
| ATCTCTATTTGCAAGGTTGA+AGG | - | chr5_3:2685518-2685537 | None:intergenic | 35.0% | |
| GGAACAAAGTTTGTAGCTCA+AGG | + | chr5_3:2684852-2684871 | Msa0791630:CDS | 40.0% | |
| !! | AAAACCATTGGTCTTGGTCT+TGG | + | chr5_3:2684890-2684909 | Msa0791630:CDS | 40.0% |
| TCTATTTGCAAGGTTGAAGG+AGG | - | chr5_3:2685515-2685534 | None:intergenic | 40.0% | |
| GGAACAAAGTTTGTAGCTCA+AGG | + | chr5_3:2684852-2684871 | Msa0791630:CDS | 40.0% | |
| !! | AAAACCATTGGTCTTGGTCT+TGG | + | chr5_3:2684890-2684909 | Msa0791630:CDS | 40.0% |
| TCTATTTGCAAGGTTGAAGG+AGG | - | chr5_3:2685515-2685534 | None:intergenic | 40.0% | |
| AAGACCAAGACCAAGACCAA+TGG | - | chr5_3:2684897-2684916 | None:intergenic | 45.0% | |
| TCAAACATGGAAGGTGGTAG+AGG | - | chr5_3:2685019-2685038 | None:intergenic | 45.0% | |
| TGTGACTCAAACATGGAAGG+TGG | - | chr5_3:2685025-2685044 | None:intergenic | 45.0% | |
| AAGACCAAGACCAAGACCAA+TGG | - | chr5_3:2684897-2684916 | None:intergenic | 45.0% | |
| TCAAACATGGAAGGTGGTAG+AGG | - | chr5_3:2685019-2685038 | None:intergenic | 45.0% | |
| TGTGACTCAAACATGGAAGG+TGG | - | chr5_3:2685025-2685044 | None:intergenic | 45.0% | |
| !! | GGTCTTGGTCTTGGTCTTGT+TGG | + | chr5_3:2684899-2684918 | Msa0791630:CDS | 50.0% |
| AACATGGAAGGTGGTAGAGG+AGG | - | chr5_3:2685016-2685035 | None:intergenic | 50.0% | |
| !! | GGTCTTGGTCTTGGTCTTGT+TGG | + | chr5_3:2684899-2684918 | Msa0791630:CDS | 50.0% |
| AACATGGAAGGTGGTAGAGG+AGG | - | chr5_3:2685016-2685035 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 2684267 | 2685633 | 2684267 | ID=Msa0791630;Name=Msa0791630 |
| chr5_3 | mRNA | 2684267 | 2685633 | 2684267 | ID=Msa0791630-mRNA-1;Parent=Msa0791630;Name=Msa0791630-mRNA-1;_AED=0.01;_eAED=0.01;_QI=353|1|1|1|1|1|2|188|239 |
| chr5_3 | exon | 2684267 | 2685269 | 2684267 | ID=Msa0791630-mRNA-1:exon:1113;Parent=Msa0791630-mRNA-1 |
| chr5_3 | exon | 2685376 | 2685633 | 2685376 | ID=Msa0791630-mRNA-1:exon:1114;Parent=Msa0791630-mRNA-1 |
| chr5_3 | five_prime_UTR | 2684267 | 2684619 | 2684267 | ID=Msa0791630-mRNA-1:five_prime_utr;Parent=Msa0791630-mRNA-1 |
| chr5_3 | CDS | 2684620 | 2685269 | 2684620 | ID=Msa0791630-mRNA-1:cds;Parent=Msa0791630-mRNA-1 |
| chr5_3 | CDS | 2685376 | 2685445 | 2685376 | ID=Msa0791630-mRNA-1:cds;Parent=Msa0791630-mRNA-1 |
| chr5_3 | three_prime_UTR | 2685446 | 2685633 | 2685446 | ID=Msa0791630-mRNA-1:three_prime_utr;Parent=Msa0791630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
