Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169500 | XP_013468625.2 | 97.280 | 478 | 9 | 1 | 1 | 478 | 1 | 474 | 0.0 | 942 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169500 | sp|D2XNQ8|FLOT1_MEDTR | 92.050 | 478 | 38 | 0 | 1 | 478 | 1 | 478 | 0.0 | 905 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169500 | A0A396JVK3 | 97.280 | 478 | 9 | 1 | 1 | 478 | 1 | 474 | 0.0 | 942 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029460 | Msa0169500 | 0.844031 | 9.721734e-59 | -8.615850e-47 |
| Msa0124740 | Msa0169500 | 0.943689 | 7.645082e-103 | -8.615850e-47 |
| Msa0124810 | Msa0169500 | 0.919012 | 7.652972e-87 | -8.615850e-47 |
| Msa0169500 | Msa0319170 | 0.802668 | 5.030130e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169500 | MtrunA17_Chr1g0186201 | 97.280 | 478 | 9 | 1 | 1 | 478 | 1 | 474 | 0.0 | 942 |
| Msa0169500 | MtrunA17_Chr3g0137321 | 92.050 | 478 | 38 | 0 | 1 | 478 | 1 | 478 | 0.0 | 905 |
| Msa0169500 | MtrunA17_Chr3g0137261 | 91.423 | 478 | 41 | 0 | 1 | 478 | 3 | 480 | 0.0 | 873 |
| Msa0169500 | MtrunA17_Chr3g0137341 | 92.050 | 478 | 34 | 2 | 1 | 478 | 1 | 474 | 0.0 | 872 |
| Msa0169500 | MtrunA17_Chr3g0137271 | 91.405 | 477 | 37 | 2 | 1 | 477 | 1 | 473 | 0.0 | 835 |
| Msa0169500 | MtrunA17_Chr1g0192071 | 88.703 | 478 | 46 | 1 | 1 | 478 | 3 | 472 | 0.0 | 834 |
| Msa0169500 | MtrunA17_Chr1g0212211 | 79.323 | 532 | 53 | 6 | 1 | 478 | 1 | 529 | 0.0 | 795 |
| Msa0169500 | MtrunA17_Chr8g0364981 | 83.575 | 414 | 42 | 4 | 52 | 464 | 1 | 389 | 0.0 | 623 |
| Msa0169500 | MtrunA17_Chr1g0184991 | 97.571 | 247 | 6 | 0 | 1 | 247 | 1 | 247 | 1.58e-179 | 502 |
| Msa0169500 | MtrunA17_Chr1g0184981 | 96.907 | 194 | 3 | 1 | 285 | 478 | 1 | 191 | 1.27e-132 | 381 |
| Msa0169500 | MtrunA17_Chr3g0137301 | 90.155 | 193 | 19 | 0 | 285 | 477 | 1 | 193 | 1.00e-122 | 356 |
| Msa0169500 | MtrunA17_Chr3g0137311 | 86.667 | 135 | 18 | 0 | 1 | 135 | 19 | 153 | 8.09e-82 | 250 |
| Msa0169500 | MtrunA17_Chr3g0110461 | 83.333 | 42 | 7 | 0 | 113 | 154 | 1 | 42 | 2.13e-16 | 73.2 |
| Msa0169500 | MtrunA17_Chr8g0364991 | 69.231 | 39 | 12 | 0 | 1 | 39 | 1 | 39 | 5.20e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169500 | AT5G25260.1 | 75.105 | 474 | 106 | 2 | 1 | 474 | 1 | 462 | 0.0 | 736 |
| Msa0169500 | AT5G25250.1 | 75.053 | 473 | 104 | 2 | 1 | 473 | 1 | 459 | 0.0 | 724 |
| Msa0169500 | AT5G64870.1 | 71.398 | 472 | 124 | 1 | 2 | 473 | 3 | 463 | 0.0 | 659 |
Find 119 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATATTTCTCATATTT+AGG | 0.109847 | 1_4:+52723107 | Msa0169500:CDS |
| TTGAACCTAAGATTAGTATT+TGG | 0.251111 | 1_4:+52724515 | Msa0169500:CDS |
| CGGAATAACGGAAGGTTCTA+TGG | 0.257659 | 1_4:+52724561 | Msa0169500:CDS |
| CTGCTAAAGCTGTGGCTCTA+AGG | 0.272737 | 1_4:+52723435 | Msa0169500:CDS |
| ATGAATATTTCTCATATTTA+GGG | 0.288839 | 1_4:+52723108 | Msa0169500:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.295084 | 1_4:+52724442 | Msa0169500:CDS |
| TGCTAAATTACCAAAATAAA+AGG | 0.295797 | 1_4:-52724740 | None:intergenic |
| TCCGACAAAAGCTCTTAATT+AGG | 0.314591 | 1_4:+52724685 | Msa0169500:exon |
| GTGAAGTTGGCTCGAAATCT+AGG | 0.314615 | 1_4:+52723195 | Msa0169500:CDS |
| TTTAGGTACAAGAGGCTAAC+TGG | 0.315931 | 1_4:+52724188 | Msa0169500:intron |
| TTAGTCCAAATACTAATCTT+AGG | 0.318195 | 1_4:-52724520 | None:intergenic |
| CTTCCCGCTGTCTTCACAAT+TGG | 0.324959 | 1_4:+52722816 | Msa0169500:CDS |
| ATTAGGAGGATGCTTGTATT+AGG | 0.327156 | 1_4:+52724702 | Msa0169500:exon |
| ACAAGGAGGGATTTAGAGTT+AGG | 0.330276 | 1_4:+52723297 | Msa0169500:CDS |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.342126 | 1_4:+52724654 | Msa0169500:CDS |
| TGTAAATCAATAACCCGAAT+TGG | 0.349196 | 1_4:-52723049 | None:intergenic |
| AAGATTAGTATTTGGACTAA+TGG | 0.361897 | 1_4:+52724523 | Msa0169500:CDS |
| GAAATGACTACACAGCTCTA+AGG | 0.365727 | 1_4:+52724422 | Msa0169500:CDS |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 1_4:+52723070 | Msa0169500:CDS |
| CAACTCGAACTAAACCAATT+CGG | 0.390858 | 1_4:+52723035 | Msa0169500:CDS |
| ATCAAAATCAAACGATGTAC+AGG | 0.393868 | 1_4:+52722622 | Msa0169500:exon |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 1_4:+52722836 | Msa0169500:CDS |
| TCAAACTTGCAAAGAAATCA+TGG | 0.416941 | 1_4:+52722697 | Msa0169500:CDS |
| AACTCGAACTAAACCAATTC+GGG | 0.427281 | 1_4:+52723036 | Msa0169500:CDS |
| TATGAGAAATATTCATGATC+AGG | 0.431543 | 1_4:-52723101 | None:intergenic |
| TCCGAGTACCTGGTGATAAC+CGG | 0.437519 | 1_4:+52722657 | Msa0169500:CDS |
| GATGTCTTCGATTCCAGCTC+CGG | 0.437947 | 1_4:-52722676 | None:intergenic |
| GAAGAAAGCGGCTTGGACTA+AGG | 0.439613 | 1_4:+52723388 | Msa0169500:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.462456 | 1_4:+52724240 | Msa0169500:CDS |
| AAATCAGTTTAGCGTATTTG+AGG | 0.472961 | 1_4:-52722866 | None:intergenic |
| TTTAGGGCAAAAGACGCAAA+TGG | 0.491891 | 1_4:+52723124 | Msa0169500:CDS |
| AAGACTGTCCATGAGCAAAC+AGG | 0.492575 | 1_4:+52724631 | Msa0169500:CDS |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.499263 | 1_4:+52723144 | Msa0169500:CDS |
| TTGGACTAAGGCGGCTCAAG+TGG | 0.501148 | 1_4:+52723400 | Msa0169500:CDS |
| TGCTAAAGCTGTGGCTCTAA+GGG | 0.501192 | 1_4:+52723436 | Msa0169500:CDS |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.503335 | 1_4:+52724650 | Msa0169500:CDS |
| TGCTTCGATGACCATGGAAG+AGG | 0.508530 | 1_4:+52722965 | Msa0169500:CDS |
| AGCAAAAGCATCCGAGTACC+TGG | 0.509436 | 1_4:+52722647 | Msa0169500:CDS |
| TAGAGTTAGGACTGAAGTGA+AGG | 0.517399 | 1_4:+52723310 | Msa0169500:CDS |
| GCTAAGATGAAAGGTGAAGT+TGG | 0.517494 | 1_4:+52723182 | Msa0169500:CDS |
| CATGTCAAGGAACTAGTTCA+AGG | 0.517510 | 1_4:+52722912 | Msa0169500:CDS |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 1_4:-52724639 | None:intergenic |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.522936 | 1_4:+52724655 | Msa0169500:CDS |
| GTTATTGCTATGCAGAGGGC+TGG | 0.525373 | 1_4:+52723266 | Msa0169500:CDS |
| TACCTGGTGATAACCGGAGC+TGG | 0.525647 | 1_4:+52722663 | Msa0169500:CDS |
| ATGGGCATGAAAGAGGTTGC+TGG | 0.526365 | 1_4:+52724580 | Msa0169500:CDS |
| TCCTCTGAAAACCTCTTCCA+TGG | 0.530446 | 1_4:-52722976 | None:intergenic |
| CGAAAGTTATTGCTATGCAG+AGG | 0.532272 | 1_4:+52723261 | Msa0169500:CDS |
| GGCTCAAGTGGCTGAAGTCG+AGG | 0.533715 | 1_4:+52723412 | Msa0169500:CDS |
| ATTAGTATTTGGACTAATGG+AGG | 0.534214 | 1_4:+52724526 | Msa0169500:CDS |
| TTCCAGCTCCGGTTATCACC+AGG | 0.538435 | 1_4:-52722665 | None:intergenic |
| TGGTGGCATGTTTCAAGAGA+TGG | 0.539247 | 1_4:+52724462 | Msa0169500:CDS |
| GACAAAAGCTCTTAATTAGG+AGG | 0.540934 | 1_4:+52724688 | Msa0169500:exon |
| TCCGGTTATCACCAGGTACT+CGG | 0.542656 | 1_4:-52722658 | None:intergenic |
| GGCTGAGGCTAATTCTGAGT+TGG | 0.544080 | 1_4:+52723361 | Msa0169500:CDS |
| TGACAATGGAGGCGGAATAA+CGG | 0.546090 | 1_4:+52724549 | Msa0169500:CDS |
| GCAGAAGGGATTGTGACACT+TGG | 0.546780 | 1_4:+52724355 | Msa0169500:CDS |
| CACCGTCTTCGACCTCTCAC+CGG | 0.548854 | 1_4:+52722740 | Msa0169500:CDS |
| GATAAGGTTCCCATCCAAGC+AGG | 0.550974 | 1_4:-52724664 | None:intergenic |
| AATACACTTCTCAATGCACT+TGG | 0.557121 | 1_4:+52724400 | Msa0169500:CDS |
| AAGAGAGGCTGAAGTGGCTG+AGG | 0.558698 | 1_4:+52723346 | Msa0169500:CDS |
| TTGGATGGTTTAGGTACAAG+AGG | 0.561865 | 1_4:+52724180 | Msa0169500:intron |
| CAAACTTGCAAAGAAATCAT+GGG | 0.562132 | 1_4:+52722698 | Msa0169500:CDS |
| AGGTTCTATGGGCATGAAAG+AGG | 0.562875 | 1_4:+52724573 | Msa0169500:CDS |
| TGCGAATGTTAAGCAATTGG+TGG | 0.563120 | 1_4:+52723073 | Msa0169500:CDS |
| GGACCAATTGTGAAGACAGC+GGG | 0.564372 | 1_4:-52722819 | None:intergenic |
| CTCAACCTCACCTTGCAACT+CGG | 0.566348 | 1_4:-52723462 | None:intergenic |
| GGAATAACGGAAGGTTCTAT+GGG | 0.567693 | 1_4:+52724562 | Msa0169500:CDS |
| CCTCGCTGCTTCGATGACCA+TGG | 0.570615 | 1_4:+52722959 | Msa0169500:CDS |
| ACTTCGAAGGTATAGTTCAC+CGG | 0.571447 | 1_4:-52722759 | None:intergenic |
| AAGACGGTGCAAGATTGACC+AGG | 0.574032 | 1_4:-52722726 | None:intergenic |
| AGGTATAGTTCACCGGTGAG+AGG | 0.574045 | 1_4:-52722752 | None:intergenic |
| AAATGACTACACAGCTCTAA+GGG | 0.574906 | 1_4:+52724423 | Msa0169500:CDS |
| AGTTGCAAGGTGAGGTTGAG+AGG | 0.575856 | 1_4:+52723465 | Msa0169500:CDS |
| TTAGGTACAAGAGGCTAACT+GGG | 0.579786 | 1_4:+52724189 | Msa0169500:intron |
| TGAAGTTGGCTCGAAATCTA+GGG | 0.579862 | 1_4:+52723196 | Msa0169500:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 1_4:+52724367 | Msa0169500:CDS |
| TGGCGAAGAAGAAAGCGGCT+TGG | 0.584288 | 1_4:+52723381 | Msa0169500:CDS |
| TCAGTTTAGCGTATTTGAGG+AGG | 0.587438 | 1_4:-52722863 | None:intergenic |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 1_4:+52723340 | Msa0169500:CDS |
| CTAAGGGAAGCCGAGTTGCA+AGG | 0.593610 | 1_4:+52723452 | Msa0169500:CDS |
| CAGAAGGGATTGTGACACTT+GGG | 0.598815 | 1_4:+52724356 | Msa0169500:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 1_4:+52724246 | Msa0169500:CDS |
| ACTCATGGCTTGAACTTCGA+AGG | 0.601319 | 1_4:-52722772 | None:intergenic |
| AATGGAGGTGACAATGGAGG+CGG | 0.607583 | 1_4:+52724541 | Msa0169500:CDS |
| TGGACTAATGGAGGTGACAA+TGG | 0.609237 | 1_4:+52724535 | Msa0169500:CDS |
| GCTGGAGAGAGTGACAAGGA+GGG | 0.609527 | 1_4:+52723284 | Msa0169500:CDS |
| CTAGTTCAAGGAATCATCGA+AGG | 0.612313 | 1_4:+52722924 | Msa0169500:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 1_4:+52723173 | Msa0169500:CDS |
| GGCTGGAGAGAGTGACAAGG+AGG | 0.627665 | 1_4:+52723283 | Msa0169500:CDS |
| CACCGGTGAGAGGTCGAAGA+CGG | 0.628279 | 1_4:-52722742 | None:intergenic |
| AAGACAGCGGGAAGAACGAA+AGG | 0.630029 | 1_4:-52722807 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.630802 | 1_4:+52723145 | Msa0169500:CDS |
| TAGTTCAAGGAATCATCGAA+GGG | 0.630851 | 1_4:+52722925 | Msa0169500:CDS |
| GAAAGTTATTGCTATGCAGA+GGG | 0.630907 | 1_4:+52723262 | Msa0169500:CDS |
| ATCAATGCTGAGGCAGTACG+TGG | 0.635980 | 1_4:+52724490 | Msa0169500:CDS |
| TCAAAATCAAACGATGTACA+GGG | 0.641066 | 1_4:+52722623 | Msa0169500:exon |
| TAGTGTTGAGTATGAAACCA+AGG | 0.644971 | 1_4:+52723541 | Msa0169500:CDS |
| GAGGGCTGGAGAGAGTGACA+AGG | 0.646522 | 1_4:+52723280 | Msa0169500:CDS |
| GGAAGCCGAGTTGCAAGGTG+AGG | 0.648282 | 1_4:+52723457 | Msa0169500:CDS |
| TGAGTTGGCGAAGAAGAAAG+CGG | 0.653130 | 1_4:+52723376 | Msa0169500:CDS |
| TAAACTCTCGAATCATGTCA+AGG | 0.655320 | 1_4:+52722899 | Msa0169500:CDS |
| TGGACAGTCTTAAACAGAGG+TGG | 0.656626 | 1_4:-52724619 | None:intergenic |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 1_4:+52724445 | Msa0169500:CDS |
| TCATGGACAGTCTTAAACAG+AGG | 0.660499 | 1_4:-52724622 | None:intergenic |
| AGTCGAGGCTGCTAAAGCTG+TGG | 0.666475 | 1_4:+52723427 | Msa0169500:CDS |
| AATGGAGGCGGAATAACGGA+AGG | 0.668536 | 1_4:+52724553 | Msa0169500:CDS |
| AAGGTTCCCATCCAAGCAGG+AGG | 0.669932 | 1_4:-52724661 | None:intergenic |
| GTTGGCTCGAAATCTAGGGA+AGG | 0.671253 | 1_4:+52723200 | Msa0169500:CDS |
| ACTAATGGAGGTGACAATGG+AGG | 0.677352 | 1_4:+52724538 | Msa0169500:CDS |
| TGATTCGAGAGTTTATCATG+AGG | 0.680428 | 1_4:-52722891 | None:intergenic |
| GATGGCTAAGATCAATGCTG+AGG | 0.682349 | 1_4:+52724480 | Msa0169500:CDS |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 1_4:+52723154 | Msa0169500:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 1_4:-52722840 | None:intergenic |
| AGACGGTGCAAGATTGACCA+GGG | 0.716272 | 1_4:-52722725 | None:intergenic |
| AGTTCAAGGAATCATCGAAG+GGG | 0.721843 | 1_4:+52722926 | Msa0169500:CDS |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 1_4:-52722820 | None:intergenic |
| CCATGGTCATCGAAGCAGCG+AGG | 0.728643 | 1_4:-52722959 | None:intergenic |
| GAAAGCGGCTTGGACTAAGG+CGG | 0.747622 | 1_4:+52723391 | Msa0169500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTAATAAATGAAAGA+AGG | - | chr1_4:52723588-52723607 | None:intergenic | 10.0% |
| !!! | AATAATACTTTAATATCTTT+TGG | + | chr1_4:52723640-52723659 | Msa0169500:intron | 10.0% |
| !! | AATAATTAATAAATGAAAGA+AGG | - | chr1_4:52723588-52723607 | None:intergenic | 10.0% |
| !!! | AATAATACTTTAATATCTTT+TGG | + | chr1_4:52723640-52723659 | Msa0169500:intron | 10.0% |
| !! | ATGAATATTTCTCATATTTA+GGG | + | chr1_4:52723108-52723127 | Msa0169500:CDS | 15.0% |
| !! | CATTATAAAACTAAATCATA+TGG | + | chr1_4:52723814-52723833 | Msa0169500:intron | 15.0% |
| !!! | TGTTCTAAATTAATTTTGTT+AGG | + | chr1_4:52723870-52723889 | Msa0169500:intron | 15.0% |
| !!! | AATGTTTATTTTTTAAGTAC+TGG | + | chr1_4:52724149-52724168 | Msa0169500:intron | 15.0% |
| !! | ATGAATATTTCTCATATTTA+GGG | + | chr1_4:52723108-52723127 | Msa0169500:CDS | 15.0% |
| !! | CATTATAAAACTAAATCATA+TGG | + | chr1_4:52723814-52723833 | Msa0169500:intron | 15.0% |
| !!! | TGTTCTAAATTAATTTTGTT+AGG | + | chr1_4:52723870-52723889 | Msa0169500:intron | 15.0% |
| !!! | AATGTTTATTTTTTAAGTAC+TGG | + | chr1_4:52724149-52724168 | Msa0169500:intron | 15.0% |
| !! | CATGAATATTTCTCATATTT+AGG | + | chr1_4:52723107-52723126 | Msa0169500:CDS | 20.0% |
| !!! | TTAATATGTTATATGGACTA+TGG | + | chr1_4:52723738-52723757 | Msa0169500:intron | 20.0% |
| !!! | TATGGAATAGTCAAATTTTT+TGG | + | chr1_4:52723756-52723775 | Msa0169500:intron | 20.0% |
| !! | TTAAAAAAATTGACAAGGTT+TGG | - | chr1_4:52724065-52724084 | None:intergenic | 20.0% |
| !! | TCATGTTAAAAAAATTGACA+AGG | - | chr1_4:52724070-52724089 | None:intergenic | 20.0% |
| !! | TGCTAAATTACCAAAATAAA+AGG | - | chr1_4:52724743-52724762 | None:intergenic | 20.0% |
| !! | CATGAATATTTCTCATATTT+AGG | + | chr1_4:52723107-52723126 | Msa0169500:CDS | 20.0% |
| !!! | TTAATATGTTATATGGACTA+TGG | + | chr1_4:52723738-52723757 | Msa0169500:intron | 20.0% |
| !!! | TATGGAATAGTCAAATTTTT+TGG | + | chr1_4:52723756-52723775 | Msa0169500:intron | 20.0% |
| !! | TTAAAAAAATTGACAAGGTT+TGG | - | chr1_4:52724065-52724084 | None:intergenic | 20.0% |
| !! | TCATGTTAAAAAAATTGACA+AGG | - | chr1_4:52724070-52724089 | None:intergenic | 20.0% |
| !! | TGCTAAATTACCAAAATAAA+AGG | - | chr1_4:52724743-52724762 | None:intergenic | 20.0% |
| ! | TATGAGAAATATTCATGATC+AGG | - | chr1_4:52723104-52723123 | None:intergenic | 25.0% |
| !!! | TCACTGTAGTTAAAGTTTTT+TGG | + | chr1_4:52723674-52723693 | Msa0169500:intron | 25.0% |
| ! | ACAAAATAATAGCAAGCAAA+GGG | - | chr1_4:52723921-52723940 | None:intergenic | 25.0% |
| !!! | GCTATTATTTTGTGTACTTT+TGG | + | chr1_4:52723928-52723947 | Msa0169500:intron | 25.0% |
| ! | AAAACAAAACGATTGACATA+TGG | + | chr1_4:52723992-52724011 | Msa0169500:intron | 25.0% |
| ! | ATTGACATATGGTATGTAAA+TGG | + | chr1_4:52724003-52724022 | Msa0169500:intron | 25.0% |
| ! | GAAGTAAAACATAACAAAGT+AGG | + | chr1_4:52724102-52724121 | Msa0169500:intron | 25.0% |
| !!! | TTAAGTACTGGTTGAAATTT+TGG | + | chr1_4:52724161-52724180 | Msa0169500:intron | 25.0% |
| ! | TTGAACCTAAGATTAGTATT+TGG | + | chr1_4:52724515-52724534 | Msa0169500:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | - | chr1_4:52724523-52724542 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | + | chr1_4:52724523-52724542 | Msa0169500:CDS | 25.0% |
| !!! | AGTAGCAATACCTTTTATTT+TGG | + | chr1_4:52724730-52724749 | Msa0169500:three_prime_UTR | 25.0% |
| ! | TATGAGAAATATTCATGATC+AGG | - | chr1_4:52723104-52723123 | None:intergenic | 25.0% |
| !!! | TCACTGTAGTTAAAGTTTTT+TGG | + | chr1_4:52723674-52723693 | Msa0169500:intron | 25.0% |
| ! | ACAAAATAATAGCAAGCAAA+GGG | - | chr1_4:52723921-52723940 | None:intergenic | 25.0% |
| !!! | GCTATTATTTTGTGTACTTT+TGG | + | chr1_4:52723928-52723947 | Msa0169500:intron | 25.0% |
| ! | AAAACAAAACGATTGACATA+TGG | + | chr1_4:52723992-52724011 | Msa0169500:intron | 25.0% |
| ! | ATTGACATATGGTATGTAAA+TGG | + | chr1_4:52724003-52724022 | Msa0169500:intron | 25.0% |
| ! | GAAGTAAAACATAACAAAGT+AGG | + | chr1_4:52724102-52724121 | Msa0169500:intron | 25.0% |
| !!! | TTAAGTACTGGTTGAAATTT+TGG | + | chr1_4:52724161-52724180 | Msa0169500:intron | 25.0% |
| ! | TTGAACCTAAGATTAGTATT+TGG | + | chr1_4:52724515-52724534 | Msa0169500:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | - | chr1_4:52724523-52724542 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | + | chr1_4:52724523-52724542 | Msa0169500:CDS | 25.0% |
| !!! | AGTAGCAATACCTTTTATTT+TGG | + | chr1_4:52724730-52724749 | Msa0169500:three_prime_UTR | 25.0% |
| ! | GTTTCAATTTTCTTGTCAAG+AGG | + | chr1_4:52722585-52722604 | Msa0169500:five_prime_UTR | 30.0% |
| ATCAAAATCAAACGATGTAC+AGG | + | chr1_4:52722622-52722641 | Msa0169500:exon | 30.0% | |
| TCAAAATCAAACGATGTACA+GGG | + | chr1_4:52722623-52722642 | Msa0169500:exon | 30.0% | |
| TCAAACTTGCAAAGAAATCA+TGG | + | chr1_4:52722697-52722716 | Msa0169500:CDS | 30.0% | |
| CAAACTTGCAAAGAAATCAT+GGG | + | chr1_4:52722698-52722717 | Msa0169500:CDS | 30.0% | |
| AAATCAGTTTAGCGTATTTG+AGG | - | chr1_4:52722869-52722888 | None:intergenic | 30.0% | |
| TGTAAATCAATAACCCGAAT+TGG | - | chr1_4:52723052-52723071 | None:intergenic | 30.0% | |
| AAGAAGGAGTTATATTTGCA+TGG | - | chr1_4:52723572-52723591 | None:intergenic | 30.0% | |
| CACAAAATAATAGCAAGCAA+AGG | - | chr1_4:52723922-52723941 | None:intergenic | 30.0% | |
| GGCAAATAGATTGAAGAATA+TGG | + | chr1_4:52724024-52724043 | Msa0169500:intron | 30.0% | |
| ! | AAAAATTGACAAGGTTTGGT+TGG | - | chr1_4:52724061-52724080 | None:intergenic | 30.0% |
| ! | GTTGAAATTTTGGATGGTTT+AGG | + | chr1_4:52724171-52724190 | Msa0169500:intron | 30.0% |
| ! | AGGGATTACTTGATGATAAA+TGG | + | chr1_4:52724442-52724461 | Msa0169500:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | + | chr1_4:52724445-52724464 | Msa0169500:CDS | 30.0% |
| ATTAGTATTTGGACTAATGG+AGG | + | chr1_4:52724526-52724545 | Msa0169500:CDS | 30.0% | |
| ! | TCCTAATTAAGAGCTTTTGT+CGG | - | chr1_4:52724689-52724708 | None:intergenic | 30.0% |
| ! | GTTTCAATTTTCTTGTCAAG+AGG | + | chr1_4:52722585-52722604 | Msa0169500:five_prime_UTR | 30.0% |
| ATCAAAATCAAACGATGTAC+AGG | + | chr1_4:52722622-52722641 | Msa0169500:exon | 30.0% | |
| TCAAAATCAAACGATGTACA+GGG | + | chr1_4:52722623-52722642 | Msa0169500:exon | 30.0% | |
| TCAAACTTGCAAAGAAATCA+TGG | + | chr1_4:52722697-52722716 | Msa0169500:CDS | 30.0% | |
| CAAACTTGCAAAGAAATCAT+GGG | + | chr1_4:52722698-52722717 | Msa0169500:CDS | 30.0% | |
| AAATCAGTTTAGCGTATTTG+AGG | - | chr1_4:52722869-52722888 | None:intergenic | 30.0% | |
| TGTAAATCAATAACCCGAAT+TGG | - | chr1_4:52723052-52723071 | None:intergenic | 30.0% | |
| AAGAAGGAGTTATATTTGCA+TGG | - | chr1_4:52723572-52723591 | None:intergenic | 30.0% | |
| CACAAAATAATAGCAAGCAA+AGG | - | chr1_4:52723922-52723941 | None:intergenic | 30.0% | |
| GGCAAATAGATTGAAGAATA+TGG | + | chr1_4:52724024-52724043 | Msa0169500:intron | 30.0% | |
| ! | AAAAATTGACAAGGTTTGGT+TGG | - | chr1_4:52724061-52724080 | None:intergenic | 30.0% |
| ! | GTTGAAATTTTGGATGGTTT+AGG | + | chr1_4:52724171-52724190 | Msa0169500:intron | 30.0% |
| ! | AGGGATTACTTGATGATAAA+TGG | + | chr1_4:52724442-52724461 | Msa0169500:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | + | chr1_4:52724445-52724464 | Msa0169500:CDS | 30.0% |
| ATTAGTATTTGGACTAATGG+AGG | + | chr1_4:52724526-52724545 | Msa0169500:CDS | 30.0% | |
| ! | TCCTAATTAAGAGCTTTTGT+CGG | - | chr1_4:52724689-52724708 | None:intergenic | 30.0% |
| ! | AAGAACGAAAGGCAGTTTTT+CGG | - | chr1_4:52722799-52722818 | None:intergenic | 35.0% |
| TGATTCGAGAGTTTATCATG+AGG | - | chr1_4:52722894-52722913 | None:intergenic | 35.0% | |
| TAAACTCTCGAATCATGTCA+AGG | + | chr1_4:52722899-52722918 | Msa0169500:CDS | 35.0% | |
| TAGTTCAAGGAATCATCGAA+GGG | + | chr1_4:52722925-52722944 | Msa0169500:CDS | 35.0% | |
| CAACTCGAACTAAACCAATT+CGG | + | chr1_4:52723035-52723054 | Msa0169500:CDS | 35.0% | |
| AACTCGAACTAAACCAATTC+GGG | + | chr1_4:52723036-52723055 | Msa0169500:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | + | chr1_4:52723070-52723089 | Msa0169500:CDS | 35.0% | |
| GAAAGTTATTGCTATGCAGA+GGG | + | chr1_4:52723262-52723281 | Msa0169500:CDS | 35.0% | |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | + | chr1_4:52723331-52723350 | Msa0169500:CDS | 35.0% |
| ! | TAGTGTTGAGTATGAAACCA+AGG | + | chr1_4:52723541-52723560 | Msa0169500:CDS | 35.0% |
| ! | ATATTTGCATGGACTAACCT+TGG | - | chr1_4:52723561-52723580 | None:intergenic | 35.0% |
| !!! | GTACTGGTTGAAATTTTGGA+TGG | + | chr1_4:52724165-52724184 | Msa0169500:intron | 35.0% |
| AGCAATTCTGTATGAGAAGA+AGG | + | chr1_4:52724240-52724259 | Msa0169500:CDS | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | + | chr1_4:52724333-52724352 | Msa0169500:CDS | 35.0% | |
| CAAAGAAAAAAGAGGCAGAA+GGG | + | chr1_4:52724341-52724360 | Msa0169500:CDS | 35.0% | |
| AATACACTTCTCAATGCACT+TGG | + | chr1_4:52724400-52724419 | Msa0169500:CDS | 35.0% | |
| ! | AAATGACTACACAGCTCTAA+GGG | + | chr1_4:52724423-52724442 | Msa0169500:CDS | 35.0% |
| ! | TTAAGAGCTTTTGTCGGATA+AGG | - | chr1_4:52724683-52724702 | None:intergenic | 35.0% |
| TCCGACAAAAGCTCTTAATT+AGG | + | chr1_4:52724685-52724704 | Msa0169500:exon | 35.0% | |
| GACAAAAGCTCTTAATTAGG+AGG | + | chr1_4:52724688-52724707 | Msa0169500:exon | 35.0% | |
| ATTAGGAGGATGCTTGTATT+AGG | + | chr1_4:52724702-52724721 | Msa0169500:exon | 35.0% | |
| ! | AAGAACGAAAGGCAGTTTTT+CGG | - | chr1_4:52722799-52722818 | None:intergenic | 35.0% |
| TGATTCGAGAGTTTATCATG+AGG | - | chr1_4:52722894-52722913 | None:intergenic | 35.0% | |
| TAAACTCTCGAATCATGTCA+AGG | + | chr1_4:52722899-52722918 | Msa0169500:CDS | 35.0% | |
| TAGTTCAAGGAATCATCGAA+GGG | + | chr1_4:52722925-52722944 | Msa0169500:CDS | 35.0% | |
| CAACTCGAACTAAACCAATT+CGG | + | chr1_4:52723035-52723054 | Msa0169500:CDS | 35.0% | |
| AACTCGAACTAAACCAATTC+GGG | + | chr1_4:52723036-52723055 | Msa0169500:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | + | chr1_4:52723070-52723089 | Msa0169500:CDS | 35.0% | |
| GAAAGTTATTGCTATGCAGA+GGG | + | chr1_4:52723262-52723281 | Msa0169500:CDS | 35.0% | |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | + | chr1_4:52723331-52723350 | Msa0169500:CDS | 35.0% |
| ! | TAGTGTTGAGTATGAAACCA+AGG | + | chr1_4:52723541-52723560 | Msa0169500:CDS | 35.0% |
| ! | ATATTTGCATGGACTAACCT+TGG | - | chr1_4:52723561-52723580 | None:intergenic | 35.0% |
| !!! | GTACTGGTTGAAATTTTGGA+TGG | + | chr1_4:52724165-52724184 | Msa0169500:intron | 35.0% |
| AGCAATTCTGTATGAGAAGA+AGG | + | chr1_4:52724240-52724259 | Msa0169500:CDS | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | + | chr1_4:52724333-52724352 | Msa0169500:CDS | 35.0% | |
| CAAAGAAAAAAGAGGCAGAA+GGG | + | chr1_4:52724341-52724360 | Msa0169500:CDS | 35.0% | |
| AATACACTTCTCAATGCACT+TGG | + | chr1_4:52724400-52724419 | Msa0169500:CDS | 35.0% | |
| ! | AAATGACTACACAGCTCTAA+GGG | + | chr1_4:52724423-52724442 | Msa0169500:CDS | 35.0% |
| ! | TTAAGAGCTTTTGTCGGATA+AGG | - | chr1_4:52724683-52724702 | None:intergenic | 35.0% |
| TCCGACAAAAGCTCTTAATT+AGG | + | chr1_4:52724685-52724704 | Msa0169500:exon | 35.0% | |
| GACAAAAGCTCTTAATTAGG+AGG | + | chr1_4:52724688-52724707 | Msa0169500:exon | 35.0% | |
| ATTAGGAGGATGCTTGTATT+AGG | + | chr1_4:52724702-52724721 | Msa0169500:exon | 35.0% | |
| ! | AAGAAATCATGGGTTTTCCC+TGG | + | chr1_4:52722708-52722727 | Msa0169500:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+CGG | - | chr1_4:52722762-52722781 | None:intergenic | 40.0% |
| TCAGTTTAGCGTATTTGAGG+AGG | - | chr1_4:52722866-52722885 | None:intergenic | 40.0% | |
| CATGTCAAGGAACTAGTTCA+AGG | + | chr1_4:52722912-52722931 | Msa0169500:CDS | 40.0% | |
| CTAGTTCAAGGAATCATCGA+AGG | + | chr1_4:52722924-52722943 | Msa0169500:CDS | 40.0% | |
| AGTTCAAGGAATCATCGAAG+GGG | + | chr1_4:52722926-52722945 | Msa0169500:CDS | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | + | chr1_4:52723073-52723092 | Msa0169500:CDS | 40.0% | |
| ! | TTTAGGGCAAAAGACGCAAA+TGG | + | chr1_4:52723124-52723143 | Msa0169500:CDS | 40.0% |
| GCTAAGATGAAAGGTGAAGT+TGG | + | chr1_4:52723182-52723201 | Msa0169500:CDS | 40.0% | |
| !! | TGAAGTTGGCTCGAAATCTA+GGG | + | chr1_4:52723196-52723215 | Msa0169500:CDS | 40.0% |
| GAATGCAGCAAAAATTGACG+CGG | + | chr1_4:52723235-52723254 | Msa0169500:CDS | 40.0% | |
| CGAAAGTTATTGCTATGCAG+AGG | + | chr1_4:52723261-52723280 | Msa0169500:CDS | 40.0% | |
| ! | ACAAGGAGGGATTTAGAGTT+AGG | + | chr1_4:52723297-52723316 | Msa0169500:CDS | 40.0% |
| TAGAGTTAGGACTGAAGTGA+AGG | + | chr1_4:52723310-52723329 | Msa0169500:CDS | 40.0% | |
| AATGTGCCAAGTCTAAATCG+TGG | + | chr1_4:52723893-52723912 | Msa0169500:intron | 40.0% | |
| AGCAAGTGCTATGTTTCGTT+TGG | + | chr1_4:52723967-52723986 | Msa0169500:intron | 40.0% | |
| TTGGATGGTTTAGGTACAAG+AGG | + | chr1_4:52724180-52724199 | Msa0169500:intron | 40.0% | |
| TTTAGGTACAAGAGGCTAAC+TGG | + | chr1_4:52724188-52724207 | Msa0169500:intron | 40.0% | |
| TTAGGTACAAGAGGCTAACT+GGG | + | chr1_4:52724189-52724208 | Msa0169500:intron | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+AGG | + | chr1_4:52724340-52724359 | Msa0169500:CDS | 40.0% | |
| GAAATGACTACACAGCTCTA+AGG | + | chr1_4:52724422-52724441 | Msa0169500:CDS | 40.0% | |
| ! | GGAATAACGGAAGGTTCTAT+GGG | + | chr1_4:52724562-52724581 | Msa0169500:CDS | 40.0% |
| TCATGGACAGTCTTAAACAG+AGG | - | chr1_4:52724625-52724644 | None:intergenic | 40.0% | |
| ! | AAGAAATCATGGGTTTTCCC+TGG | + | chr1_4:52722708-52722727 | Msa0169500:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+CGG | - | chr1_4:52722762-52722781 | None:intergenic | 40.0% |
| TCAGTTTAGCGTATTTGAGG+AGG | - | chr1_4:52722866-52722885 | None:intergenic | 40.0% | |
| CATGTCAAGGAACTAGTTCA+AGG | + | chr1_4:52722912-52722931 | Msa0169500:CDS | 40.0% | |
| CTAGTTCAAGGAATCATCGA+AGG | + | chr1_4:52722924-52722943 | Msa0169500:CDS | 40.0% | |
| AGTTCAAGGAATCATCGAAG+GGG | + | chr1_4:52722926-52722945 | Msa0169500:CDS | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | + | chr1_4:52723073-52723092 | Msa0169500:CDS | 40.0% | |
| ! | TTTAGGGCAAAAGACGCAAA+TGG | + | chr1_4:52723124-52723143 | Msa0169500:CDS | 40.0% |
| GCTAAGATGAAAGGTGAAGT+TGG | + | chr1_4:52723182-52723201 | Msa0169500:CDS | 40.0% | |
| !! | TGAAGTTGGCTCGAAATCTA+GGG | + | chr1_4:52723196-52723215 | Msa0169500:CDS | 40.0% |
| GAATGCAGCAAAAATTGACG+CGG | + | chr1_4:52723235-52723254 | Msa0169500:CDS | 40.0% | |
| CGAAAGTTATTGCTATGCAG+AGG | + | chr1_4:52723261-52723280 | Msa0169500:CDS | 40.0% | |
| ! | ACAAGGAGGGATTTAGAGTT+AGG | + | chr1_4:52723297-52723316 | Msa0169500:CDS | 40.0% |
| TAGAGTTAGGACTGAAGTGA+AGG | + | chr1_4:52723310-52723329 | Msa0169500:CDS | 40.0% | |
| AATGTGCCAAGTCTAAATCG+TGG | + | chr1_4:52723893-52723912 | Msa0169500:intron | 40.0% | |
| AGCAAGTGCTATGTTTCGTT+TGG | + | chr1_4:52723967-52723986 | Msa0169500:intron | 40.0% | |
| TTGGATGGTTTAGGTACAAG+AGG | + | chr1_4:52724180-52724199 | Msa0169500:intron | 40.0% | |
| TTTAGGTACAAGAGGCTAAC+TGG | + | chr1_4:52724188-52724207 | Msa0169500:intron | 40.0% | |
| TTAGGTACAAGAGGCTAACT+GGG | + | chr1_4:52724189-52724208 | Msa0169500:intron | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+AGG | + | chr1_4:52724340-52724359 | Msa0169500:CDS | 40.0% | |
| GAAATGACTACACAGCTCTA+AGG | + | chr1_4:52724422-52724441 | Msa0169500:CDS | 40.0% | |
| ! | GGAATAACGGAAGGTTCTAT+GGG | + | chr1_4:52724562-52724581 | Msa0169500:CDS | 40.0% |
| TCATGGACAGTCTTAAACAG+AGG | - | chr1_4:52724625-52724644 | None:intergenic | 40.0% | |
| ACTCATGGCTTGAACTTCGA+AGG | - | chr1_4:52722775-52722794 | None:intergenic | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | - | chr1_4:52722823-52722842 | None:intergenic | 45.0% | |
| ! | ACCATGGAAGAGGTTTTCAG+AGG | + | chr1_4:52722975-52722994 | Msa0169500:CDS | 45.0% |
| ! | TCCTCTGAAAACCTCTTCCA+TGG | - | chr1_4:52722979-52722998 | None:intergenic | 45.0% |
| GTGGCAGAAGCTAAGATGAA+AGG | + | chr1_4:52723173-52723192 | Msa0169500:CDS | 45.0% | |
| !! | GTGAAGTTGGCTCGAAATCT+AGG | + | chr1_4:52723195-52723214 | Msa0169500:CDS | 45.0% |
| GAATCAAAGAGAGGCTGAAG+TGG | + | chr1_4:52723340-52723359 | Msa0169500:CDS | 45.0% | |
| ! | TGAGTTGGCGAAGAAGAAAG+CGG | + | chr1_4:52723376-52723395 | Msa0169500:CDS | 45.0% |
| !! | TGCTAAAGCTGTGGCTCTAA+GGG | + | chr1_4:52723436-52723455 | Msa0169500:CDS | 45.0% |
| AGGGATCCACGATTTAGACT+TGG | - | chr1_4:52723902-52723921 | None:intergenic | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | + | chr1_4:52724246-52724265 | Msa0169500:CDS | 45.0% | |
| CAGAAGGGATTGTGACACTT+GGG | + | chr1_4:52724356-52724375 | Msa0169500:CDS | 45.0% | |
| TGGTGGCATGTTTCAAGAGA+TGG | + | chr1_4:52724462-52724481 | Msa0169500:CDS | 45.0% | |
| GATGGCTAAGATCAATGCTG+AGG | + | chr1_4:52724480-52724499 | Msa0169500:CDS | 45.0% | |
| TGGACTAATGGAGGTGACAA+TGG | + | chr1_4:52724535-52724554 | Msa0169500:CDS | 45.0% | |
| ACTAATGGAGGTGACAATGG+AGG | + | chr1_4:52724538-52724557 | Msa0169500:CDS | 45.0% | |
| TGACAATGGAGGCGGAATAA+CGG | + | chr1_4:52724549-52724568 | Msa0169500:CDS | 45.0% | |
| ! | CGGAATAACGGAAGGTTCTA+TGG | + | chr1_4:52724561-52724580 | Msa0169500:CDS | 45.0% |
| AGGTTCTATGGGCATGAAAG+AGG | + | chr1_4:52724573-52724592 | Msa0169500:CDS | 45.0% | |
| TGGACAGTCTTAAACAGAGG+TGG | - | chr1_4:52724622-52724641 | None:intergenic | 45.0% | |
| AAGACTGTCCATGAGCAAAC+AGG | + | chr1_4:52724631-52724650 | Msa0169500:CDS | 45.0% | |
| ACTCATGGCTTGAACTTCGA+AGG | - | chr1_4:52722775-52722794 | None:intergenic | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | - | chr1_4:52722823-52722842 | None:intergenic | 45.0% | |
| ! | ACCATGGAAGAGGTTTTCAG+AGG | + | chr1_4:52722975-52722994 | Msa0169500:CDS | 45.0% |
| ! | TCCTCTGAAAACCTCTTCCA+TGG | - | chr1_4:52722979-52722998 | None:intergenic | 45.0% |
| GTGGCAGAAGCTAAGATGAA+AGG | + | chr1_4:52723173-52723192 | Msa0169500:CDS | 45.0% | |
| !! | GTGAAGTTGGCTCGAAATCT+AGG | + | chr1_4:52723195-52723214 | Msa0169500:CDS | 45.0% |
| GAATCAAAGAGAGGCTGAAG+TGG | + | chr1_4:52723340-52723359 | Msa0169500:CDS | 45.0% | |
| ! | TGAGTTGGCGAAGAAGAAAG+CGG | + | chr1_4:52723376-52723395 | Msa0169500:CDS | 45.0% |
| !! | TGCTAAAGCTGTGGCTCTAA+GGG | + | chr1_4:52723436-52723455 | Msa0169500:CDS | 45.0% |
| AGGGATCCACGATTTAGACT+TGG | - | chr1_4:52723902-52723921 | None:intergenic | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | + | chr1_4:52724246-52724265 | Msa0169500:CDS | 45.0% | |
| CAGAAGGGATTGTGACACTT+GGG | + | chr1_4:52724356-52724375 | Msa0169500:CDS | 45.0% | |
| TGGTGGCATGTTTCAAGAGA+TGG | + | chr1_4:52724462-52724481 | Msa0169500:CDS | 45.0% | |
| GATGGCTAAGATCAATGCTG+AGG | + | chr1_4:52724480-52724499 | Msa0169500:CDS | 45.0% | |
| TGGACTAATGGAGGTGACAA+TGG | + | chr1_4:52724535-52724554 | Msa0169500:CDS | 45.0% | |
| ACTAATGGAGGTGACAATGG+AGG | + | chr1_4:52724538-52724557 | Msa0169500:CDS | 45.0% | |
| TGACAATGGAGGCGGAATAA+CGG | + | chr1_4:52724549-52724568 | Msa0169500:CDS | 45.0% | |
| ! | CGGAATAACGGAAGGTTCTA+TGG | + | chr1_4:52724561-52724580 | Msa0169500:CDS | 45.0% |
| AGGTTCTATGGGCATGAAAG+AGG | + | chr1_4:52724573-52724592 | Msa0169500:CDS | 45.0% | |
| TGGACAGTCTTAAACAGAGG+TGG | - | chr1_4:52724622-52724641 | None:intergenic | 45.0% | |
| AAGACTGTCCATGAGCAAAC+AGG | + | chr1_4:52724631-52724650 | Msa0169500:CDS | 45.0% | |
| !!! | TTATTTTTTAATATGTTATA+TGG | + | chr1_4:52723731-52723750 | Msa0169500:intron | 5.0% |
| !!! | TTATTTTTTAATATGTTATA+TGG | + | chr1_4:52723731-52723750 | Msa0169500:intron | 5.0% |
| !! | AGCAAAAGCATCCGAGTACC+TGG | + | chr1_4:52722647-52722666 | Msa0169500:CDS | 50.0% |
| TCCGAGTACCTGGTGATAAC+CGG | + | chr1_4:52722657-52722676 | Msa0169500:CDS | 50.0% | |
| TCCGGTTATCACCAGGTACT+CGG | - | chr1_4:52722661-52722680 | None:intergenic | 50.0% | |
| GATGTCTTCGATTCCAGCTC+CGG | - | chr1_4:52722679-52722698 | None:intergenic | 50.0% | |
| AGACGGTGCAAGATTGACCA+GGG | - | chr1_4:52722728-52722747 | None:intergenic | 50.0% | |
| AAGACGGTGCAAGATTGACC+AGG | - | chr1_4:52722729-52722748 | None:intergenic | 50.0% | |
| AGGTATAGTTCACCGGTGAG+AGG | - | chr1_4:52722755-52722774 | None:intergenic | 50.0% | |
| !! | AGGCAGTTTTTCGGCACTCA+TGG | - | chr1_4:52722790-52722809 | None:intergenic | 50.0% |
| AAGACAGCGGGAAGAACGAA+AGG | - | chr1_4:52722810-52722829 | None:intergenic | 50.0% | |
| CTTCCCGCTGTCTTCACAAT+TGG | + | chr1_4:52722816-52722835 | Msa0169500:CDS | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | - | chr1_4:52722822-52722841 | None:intergenic | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | - | chr1_4:52722843-52722862 | None:intergenic | 50.0% | |
| TGCTTCGATGACCATGGAAG+AGG | + | chr1_4:52722965-52722984 | Msa0169500:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | + | chr1_4:52723144-52723163 | Msa0169500:CDS | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | + | chr1_4:52723145-52723164 | Msa0169500:CDS | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | + | chr1_4:52723154-52723173 | Msa0169500:CDS | 50.0% | |
| !! | GTTGGCTCGAAATCTAGGGA+AGG | + | chr1_4:52723200-52723219 | Msa0169500:CDS | 50.0% |
| GTTATTGCTATGCAGAGGGC+TGG | + | chr1_4:52723266-52723285 | Msa0169500:CDS | 50.0% | |
| GGCTGAGGCTAATTCTGAGT+TGG | + | chr1_4:52723361-52723380 | Msa0169500:CDS | 50.0% | |
| ! | GAAGAAAGCGGCTTGGACTA+AGG | + | chr1_4:52723388-52723407 | Msa0169500:CDS | 50.0% |
| ! | CTGCTAAAGCTGTGGCTCTA+AGG | + | chr1_4:52723435-52723454 | Msa0169500:CDS | 50.0% |
| CTCAACCTCACCTTGCAACT+CGG | - | chr1_4:52723465-52723484 | None:intergenic | 50.0% | |
| AGTTGCAAGGTGAGGTTGAG+AGG | + | chr1_4:52723465-52723484 | Msa0169500:CDS | 50.0% | |
| GCAGAAGGGATTGTGACACT+TGG | + | chr1_4:52724355-52724374 | Msa0169500:CDS | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | + | chr1_4:52724367-52724386 | Msa0169500:CDS | 50.0% | |
| ATCAATGCTGAGGCAGTACG+TGG | + | chr1_4:52724490-52724509 | Msa0169500:CDS | 50.0% | |
| AATGGAGGTGACAATGGAGG+CGG | + | chr1_4:52724541-52724560 | Msa0169500:CDS | 50.0% | |
| ! | AATGGAGGCGGAATAACGGA+AGG | + | chr1_4:52724553-52724572 | Msa0169500:CDS | 50.0% |
| ATGGGCATGAAAGAGGTTGC+TGG | + | chr1_4:52724580-52724599 | Msa0169500:CDS | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | - | chr1_4:52724642-52724661 | None:intergenic | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | + | chr1_4:52724655-52724674 | Msa0169500:CDS | 50.0% | |
| GATAAGGTTCCCATCCAAGC+AGG | - | chr1_4:52724667-52724686 | None:intergenic | 50.0% | |
| !! | AGCAAAAGCATCCGAGTACC+TGG | + | chr1_4:52722647-52722666 | Msa0169500:CDS | 50.0% |
| TCCGAGTACCTGGTGATAAC+CGG | + | chr1_4:52722657-52722676 | Msa0169500:CDS | 50.0% | |
| TCCGGTTATCACCAGGTACT+CGG | - | chr1_4:52722661-52722680 | None:intergenic | 50.0% | |
| GATGTCTTCGATTCCAGCTC+CGG | - | chr1_4:52722679-52722698 | None:intergenic | 50.0% | |
| AGACGGTGCAAGATTGACCA+GGG | - | chr1_4:52722728-52722747 | None:intergenic | 50.0% | |
| AAGACGGTGCAAGATTGACC+AGG | - | chr1_4:52722729-52722748 | None:intergenic | 50.0% | |
| AGGTATAGTTCACCGGTGAG+AGG | - | chr1_4:52722755-52722774 | None:intergenic | 50.0% | |
| !! | AGGCAGTTTTTCGGCACTCA+TGG | - | chr1_4:52722790-52722809 | None:intergenic | 50.0% |
| AAGACAGCGGGAAGAACGAA+AGG | - | chr1_4:52722810-52722829 | None:intergenic | 50.0% | |
| CTTCCCGCTGTCTTCACAAT+TGG | + | chr1_4:52722816-52722835 | Msa0169500:CDS | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | - | chr1_4:52722822-52722841 | None:intergenic | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | - | chr1_4:52722843-52722862 | None:intergenic | 50.0% | |
| TGCTTCGATGACCATGGAAG+AGG | + | chr1_4:52722965-52722984 | Msa0169500:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | + | chr1_4:52723144-52723163 | Msa0169500:CDS | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | + | chr1_4:52723145-52723164 | Msa0169500:CDS | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | + | chr1_4:52723154-52723173 | Msa0169500:CDS | 50.0% | |
| !! | GTTGGCTCGAAATCTAGGGA+AGG | + | chr1_4:52723200-52723219 | Msa0169500:CDS | 50.0% |
| GTTATTGCTATGCAGAGGGC+TGG | + | chr1_4:52723266-52723285 | Msa0169500:CDS | 50.0% | |
| GGCTGAGGCTAATTCTGAGT+TGG | + | chr1_4:52723361-52723380 | Msa0169500:CDS | 50.0% | |
| ! | GAAGAAAGCGGCTTGGACTA+AGG | + | chr1_4:52723388-52723407 | Msa0169500:CDS | 50.0% |
| ! | CTGCTAAAGCTGTGGCTCTA+AGG | + | chr1_4:52723435-52723454 | Msa0169500:CDS | 50.0% |
| CTCAACCTCACCTTGCAACT+CGG | - | chr1_4:52723465-52723484 | None:intergenic | 50.0% | |
| AGTTGCAAGGTGAGGTTGAG+AGG | + | chr1_4:52723465-52723484 | Msa0169500:CDS | 50.0% | |
| GCAGAAGGGATTGTGACACT+TGG | + | chr1_4:52724355-52724374 | Msa0169500:CDS | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | + | chr1_4:52724367-52724386 | Msa0169500:CDS | 50.0% | |
| ATCAATGCTGAGGCAGTACG+TGG | + | chr1_4:52724490-52724509 | Msa0169500:CDS | 50.0% | |
| AATGGAGGTGACAATGGAGG+CGG | + | chr1_4:52724541-52724560 | Msa0169500:CDS | 50.0% | |
| ! | AATGGAGGCGGAATAACGGA+AGG | + | chr1_4:52724553-52724572 | Msa0169500:CDS | 50.0% |
| ATGGGCATGAAAGAGGTTGC+TGG | + | chr1_4:52724580-52724599 | Msa0169500:CDS | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | - | chr1_4:52724642-52724661 | None:intergenic | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | + | chr1_4:52724655-52724674 | Msa0169500:CDS | 50.0% | |
| GATAAGGTTCCCATCCAAGC+AGG | - | chr1_4:52724667-52724686 | None:intergenic | 50.0% | |
| TACCTGGTGATAACCGGAGC+TGG | + | chr1_4:52722663-52722682 | Msa0169500:CDS | 55.0% | |
| TTCCAGCTCCGGTTATCACC+AGG | - | chr1_4:52722668-52722687 | None:intergenic | 55.0% | |
| ! | TGGTCCTCGTGTTGACGATC+AGG | + | chr1_4:52722836-52722855 | Msa0169500:CDS | 55.0% |
| GCTGGAGAGAGTGACAAGGA+GGG | + | chr1_4:52723284-52723303 | Msa0169500:CDS | 55.0% | |
| AAGAGAGGCTGAAGTGGCTG+AGG | + | chr1_4:52723346-52723365 | Msa0169500:CDS | 55.0% | |
| TGGCGAAGAAGAAAGCGGCT+TGG | + | chr1_4:52723381-52723400 | Msa0169500:CDS | 55.0% | |
| ! | GAAAGCGGCTTGGACTAAGG+CGG | + | chr1_4:52723391-52723410 | Msa0169500:CDS | 55.0% |
| TTGGACTAAGGCGGCTCAAG+TGG | + | chr1_4:52723400-52723419 | Msa0169500:CDS | 55.0% | |
| AGTCGAGGCTGCTAAAGCTG+TGG | + | chr1_4:52723427-52723446 | Msa0169500:CDS | 55.0% | |
| CTAAGGGAAGCCGAGTTGCA+AGG | + | chr1_4:52723452-52723471 | Msa0169500:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | + | chr1_4:52724654-52724673 | Msa0169500:CDS | 55.0% | |
| AAGGTTCCCATCCAAGCAGG+AGG | - | chr1_4:52724664-52724683 | None:intergenic | 55.0% | |
| TACCTGGTGATAACCGGAGC+TGG | + | chr1_4:52722663-52722682 | Msa0169500:CDS | 55.0% | |
| TTCCAGCTCCGGTTATCACC+AGG | - | chr1_4:52722668-52722687 | None:intergenic | 55.0% | |
| ! | TGGTCCTCGTGTTGACGATC+AGG | + | chr1_4:52722836-52722855 | Msa0169500:CDS | 55.0% |
| GCTGGAGAGAGTGACAAGGA+GGG | + | chr1_4:52723284-52723303 | Msa0169500:CDS | 55.0% | |
| AAGAGAGGCTGAAGTGGCTG+AGG | + | chr1_4:52723346-52723365 | Msa0169500:CDS | 55.0% | |
| TGGCGAAGAAGAAAGCGGCT+TGG | + | chr1_4:52723381-52723400 | Msa0169500:CDS | 55.0% | |
| ! | GAAAGCGGCTTGGACTAAGG+CGG | + | chr1_4:52723391-52723410 | Msa0169500:CDS | 55.0% |
| TTGGACTAAGGCGGCTCAAG+TGG | + | chr1_4:52723400-52723419 | Msa0169500:CDS | 55.0% | |
| AGTCGAGGCTGCTAAAGCTG+TGG | + | chr1_4:52723427-52723446 | Msa0169500:CDS | 55.0% | |
| CTAAGGGAAGCCGAGTTGCA+AGG | + | chr1_4:52723452-52723471 | Msa0169500:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | + | chr1_4:52724654-52724673 | Msa0169500:CDS | 55.0% | |
| AAGGTTCCCATCCAAGCAGG+AGG | - | chr1_4:52724664-52724683 | None:intergenic | 55.0% | |
| CACCGTCTTCGACCTCTCAC+CGG | + | chr1_4:52722740-52722759 | Msa0169500:CDS | 60.0% | |
| CACCGGTGAGAGGTCGAAGA+CGG | - | chr1_4:52722745-52722764 | None:intergenic | 60.0% | |
| CCATGGTCATCGAAGCAGCG+AGG | - | chr1_4:52722962-52722981 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCGATGACCA+TGG | + | chr1_4:52722959-52722978 | Msa0169500:CDS | 60.0% | |
| GAGGGCTGGAGAGAGTGACA+AGG | + | chr1_4:52723280-52723299 | Msa0169500:CDS | 60.0% | |
| GGCTGGAGAGAGTGACAAGG+AGG | + | chr1_4:52723283-52723302 | Msa0169500:CDS | 60.0% | |
| GGCTCAAGTGGCTGAAGTCG+AGG | + | chr1_4:52723412-52723431 | Msa0169500:CDS | 60.0% | |
| GGAAGCCGAGTTGCAAGGTG+AGG | + | chr1_4:52723457-52723476 | Msa0169500:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | + | chr1_4:52724650-52724669 | Msa0169500:CDS | 60.0% | |
| CACCGTCTTCGACCTCTCAC+CGG | + | chr1_4:52722740-52722759 | Msa0169500:CDS | 60.0% | |
| CACCGGTGAGAGGTCGAAGA+CGG | - | chr1_4:52722745-52722764 | None:intergenic | 60.0% | |
| CCATGGTCATCGAAGCAGCG+AGG | - | chr1_4:52722962-52722981 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCGATGACCA+TGG | + | chr1_4:52722959-52722978 | Msa0169500:CDS | 60.0% | |
| GAGGGCTGGAGAGAGTGACA+AGG | + | chr1_4:52723280-52723299 | Msa0169500:CDS | 60.0% | |
| GGCTGGAGAGAGTGACAAGG+AGG | + | chr1_4:52723283-52723302 | Msa0169500:CDS | 60.0% | |
| GGCTCAAGTGGCTGAAGTCG+AGG | + | chr1_4:52723412-52723431 | Msa0169500:CDS | 60.0% | |
| GGAAGCCGAGTTGCAAGGTG+AGG | + | chr1_4:52723457-52723476 | Msa0169500:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | + | chr1_4:52724650-52724669 | Msa0169500:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 52722581 | 52724810 | 52722581 | ID=Msa0169500;Name=Msa0169500 |
| chr1_4 | mRNA | 52722581 | 52724810 | 52722581 | ID=Msa0169500-mRNA-1;Parent=Msa0169500;Name=Msa0169500-mRNA-1;_AED=0.01;_eAED=0.01;_QI=55|1|1|1|1|1|2|108|478 |
| chr1_4 | exon | 52722581 | 52723562 | 52722581 | ID=Msa0169500-mRNA-1:exon:15679;Parent=Msa0169500-mRNA-1 |
| chr1_4 | exon | 52724193 | 52724810 | 52724193 | ID=Msa0169500-mRNA-1:exon:15680;Parent=Msa0169500-mRNA-1 |
| chr1_4 | five_prime_UTR | 52722581 | 52722635 | 52722581 | ID=Msa0169500-mRNA-1:five_prime_utr;Parent=Msa0169500-mRNA-1 |
| chr1_4 | CDS | 52722636 | 52723562 | 52722636 | ID=Msa0169500-mRNA-1:cds;Parent=Msa0169500-mRNA-1 |
| chr1_4 | CDS | 52724193 | 52724702 | 52724193 | ID=Msa0169500-mRNA-1:cds;Parent=Msa0169500-mRNA-1 |
| chr1_4 | three_prime_UTR | 52724703 | 52724810 | 52724703 | ID=Msa0169500-mRNA-1:three_prime_utr;Parent=Msa0169500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
