Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030620 | XP_024639356.1 | 99.644 | 562 | 2 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030620 | sp|Q54V77|PYRG_DICDI | 60.808 | 569 | 203 | 6 | 1 | 551 | 1 | 567 | 0.0 | 707 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030620 | G7IDT8 | 99.644 | 562 | 2 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1154 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030620 | Msa0082150 | 0.908839 | 1.101560e-81 | -8.615850e-47 |
| Msa0030620 | Msa0128510 | 0.936902 | 8.240404e-98 | -8.615850e-47 |
| Msa0030620 | Msa0138720 | 0.989729 | 2.172129e-179 | -8.615850e-47 |
| Msa0030620 | Msa0174530 | 0.935666 | 5.923438e-97 | -8.615850e-47 |
| Msa0030620 | Msa0769390 | 0.803764 | 2.983664e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030620 | MtrunA17_Chr1g0195001 | 99.644 | 562 | 2 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1154 |
| Msa0030620 | MtrunA17_Chr8g0356221 | 71.404 | 570 | 155 | 2 | 1 | 562 | 1 | 570 | 0.0 | 855 |
| Msa0030620 | MtrunA17_Chr2g0309341 | 72.894 | 546 | 148 | 0 | 1 | 546 | 1 | 546 | 0.0 | 841 |
| Msa0030620 | MtrunA17_Chr8g0369081 | 71.196 | 552 | 159 | 0 | 1 | 552 | 1 | 552 | 0.0 | 835 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030620 | AT4G02120.1 | 83.813 | 556 | 90 | 0 | 1 | 556 | 1 | 556 | 0.0 | 981 |
| Msa0030620 | AT4G02120.2 | 80.623 | 578 | 90 | 1 | 1 | 556 | 1 | 578 | 0.0 | 971 |
| Msa0030620 | AT4G02120.5 | 79.137 | 556 | 77 | 1 | 1 | 556 | 1 | 517 | 0.0 | 905 |
| Msa0030620 | AT4G02120.3 | 86.570 | 484 | 65 | 0 | 1 | 484 | 1 | 484 | 0.0 | 875 |
| Msa0030620 | AT3G12670.1 | 73.732 | 552 | 144 | 1 | 1 | 552 | 1 | 551 | 0.0 | 846 |
| Msa0030620 | AT4G02120.4 | 86.910 | 466 | 61 | 0 | 1 | 466 | 1 | 466 | 0.0 | 843 |
| Msa0030620 | AT1G30820.1 | 70.780 | 551 | 161 | 0 | 1 | 551 | 1 | 551 | 0.0 | 833 |
| Msa0030620 | AT4G20320.2 | 70.054 | 551 | 165 | 0 | 1 | 551 | 1 | 551 | 0.0 | 805 |
| Msa0030620 | AT4G20320.5 | 70.054 | 551 | 165 | 0 | 1 | 551 | 1 | 551 | 0.0 | 805 |
| Msa0030620 | AT4G20320.6 | 70.054 | 551 | 165 | 0 | 1 | 551 | 1 | 551 | 0.0 | 805 |
| Msa0030620 | AT4G20320.4 | 70.054 | 551 | 165 | 0 | 1 | 551 | 1 | 551 | 0.0 | 805 |
| Msa0030620 | AT4G20320.1 | 70.054 | 551 | 165 | 0 | 1 | 551 | 1 | 551 | 0.0 | 805 |
| Msa0030620 | AT2G34890.1 | 65.480 | 562 | 192 | 1 | 1 | 560 | 1 | 562 | 0.0 | 785 |
| Msa0030620 | AT4G20320.3 | 68.526 | 502 | 158 | 0 | 50 | 551 | 1 | 502 | 0.0 | 738 |
Find 176 sgRNAs with CRISPR-Local
Find 601 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGATAATATTATAATTA+TGG | 0.126755 | 1_1:+57009673 | Msa0030620:three_prime_UTR |
| GAGCGGGAAGGTTGATATTT+TGG | 0.186108 | 1_1:-57000208 | None:intergenic |
| TTCATGATGTACCAAATATT+TGG | 0.205073 | 1_1:+57003895 | Msa0030620:CDS |
| ATTGTTCTCTCTGGCATATT+TGG | 0.242741 | 1_1:-57006205 | None:intergenic |
| TTTATAGGTTGATTTGGATT+TGG | 0.257444 | 1_1:+57000688 | Msa0030620:intron |
| TTATAGGTTGATTTGGATTT+GGG | 0.261073 | 1_1:+57000689 | Msa0030620:intron |
| GCAGCTTGTGTCTTGGTTCC+AGG | 0.262807 | 1_1:+57006141 | Msa0030620:CDS |
| CATGCTGCGGCATGTGCTTC+TGG | 0.277150 | 1_1:-57005545 | None:intergenic |
| GTCTTGGTTCCAGGAGGATT+TGG | 0.288037 | 1_1:+57006150 | Msa0030620:CDS |
| AGGGGAATATGCCAAATATT+TGG | 0.292011 | 1_1:-57003906 | None:intergenic |
| ATGAAAATTACAACAGGATT+TGG | 0.292322 | 1_1:-57006421 | None:intergenic |
| TTACAACAGGATTTGGTGTT+TGG | 0.292770 | 1_1:-57006414 | None:intergenic |
| AATTGCACGCCTACATAATA+TGG | 0.299023 | 1_1:-57008286 | None:intergenic |
| GAAAAGGAGCACGCACGTTT+GGG | 0.306880 | 1_1:-57009492 | None:intergenic |
| GAAGATAATATTATAATTAT+GGG | 0.320733 | 1_1:+57009674 | Msa0030620:three_prime_UTR |
| CTAGTCATAAACAGGGTTCT+AGG | 0.329918 | 1_1:+57006514 | Msa0030620:intron |
| AGAGACTCACTCTAAGTAAC+AGG | 0.332129 | 1_1:-57003926 | None:intergenic |
| GCCTGTGAGTGTCAGGTTAA+TGG | 0.343980 | 1_1:-57009415 | None:intergenic |
| AGAAAAGGAGCACGCACGTT+TGG | 0.345282 | 1_1:-57009493 | None:intergenic |
| GGGTCTTCATTTCCATCAAC+CGG | 0.349986 | 1_1:-57001105 | None:intergenic |
| GGCGGAGTCGTTAGCGGCCT+CGG | 0.350600 | 1_1:+57000310 | Msa0030620:CDS |
| AGCCGACACAACACAGTGTC+AGG | 0.360915 | 1_1:+57002710 | Msa0030620:CDS |
| CCTTACTTGGGGATTTGCTT+GGG | 0.363800 | 1_1:+57006231 | Msa0030620:CDS |
| CCAGGCCGAGATTTGAATTC+GGG | 0.365733 | 1_1:-57008313 | None:intergenic |
| TACAACAGGATTTGGTGTTT+GGG | 0.372108 | 1_1:-57006413 | None:intergenic |
| TCCTTACTTGGGGATTTGCT+TGG | 0.377880 | 1_1:+57006230 | Msa0030620:CDS |
| CCCAGGCCGAGATTTGAATT+CGG | 0.381611 | 1_1:-57008314 | None:intergenic |
| CTACACCCAACACTGGTATC+AGG | 0.389842 | 1_1:-57002587 | None:intergenic |
| TACTACTGGGAAAATATATC+AGG | 0.394580 | 1_1:+57000760 | Msa0030620:CDS |
| ATTGAAACTTTAGAAGAAGC+TGG | 0.397254 | 1_1:+57008002 | Msa0030620:CDS |
| GTTTCATTTCATTTCATCTT+GGG | 0.397870 | 1_1:+57000163 | Msa0030620:five_prime_UTR |
| CGCGGAGGCCGCAGGCTTTG+AGG | 0.401516 | 1_1:-57000366 | None:intergenic |
| AGTTTCATTTCATTTCATCT+TGG | 0.404712 | 1_1:+57000162 | Msa0030620:five_prime_UTR |
| GATCTACGATTCTTTACTAT+AGG | 0.408278 | 1_1:+57008773 | Msa0030620:exon |
| ATTCAATGTGCAGCCTCTGC+TGG | 0.411306 | 1_1:+57003721 | Msa0030620:intron |
| AGAGAACAATGTTCCTTACT+TGG | 0.411823 | 1_1:+57006218 | Msa0030620:CDS |
| TCACCGATGCAATCAGAAAC+TGG | 0.416127 | 1_1:+57001061 | Msa0030620:CDS |
| TCAGTCCATTGCCGCAAATC+AGG | 0.416330 | 1_1:-57004721 | None:intergenic |
| TTTGCGGCAATGGACTGATA+TGG | 0.421515 | 1_1:+57004726 | Msa0030620:CDS |
| TTTATAAGCCTGTGAGTGTC+AGG | 0.421744 | 1_1:-57009422 | None:intergenic |
| GGTCTCATATTGGCAGCAAC+GGG | 0.423607 | 1_1:+57008706 | Msa0030620:intron |
| AAGGATAATAATATTACTAC+TGG | 0.423934 | 1_1:+57000746 | Msa0030620:CDS |
| GCTGCAATCCAGTCAATTGA+TGG | 0.432899 | 1_1:-57005387 | None:intergenic |
| CGCGTCACCTCCATCAAAAT+CGG | 0.434250 | 1_1:+57000385 | Msa0030620:CDS |
| TTCATATTTATCTGTTGTAA+AGG | 0.435122 | 1_1:+57004908 | Msa0030620:CDS |
| CACCTCCTGATTTGCGGCAA+TGG | 0.440971 | 1_1:+57004716 | Msa0030620:CDS |
| CTGGGCTAAAATTTGTTGGC+AGG | 0.443903 | 1_1:+57008021 | Msa0030620:CDS |
| TGCCGTAGAGCCTCAATAAA+CGG | 0.445911 | 1_1:-57001287 | None:intergenic |
| TGACATTGTTCAGGTAAATC+CGG | 0.446706 | 1_1:+57007974 | Msa0030620:intron |
| GTTGCTGTGATCCCGGTTGA+TGG | 0.447710 | 1_1:+57001093 | Msa0030620:CDS |
| GATGTTTGTGTGATTGAGCT+TGG | 0.449727 | 1_1:+57001132 | Msa0030620:CDS |
| GAGGACGACGCCGATGCTGC+TGG | 0.450311 | 1_1:-57000347 | None:intergenic |
| GAGAACAATGTTCCTTACTT+GGG | 0.452256 | 1_1:+57006219 | Msa0030620:CDS |
| ATTGGCAGCAACGGGGAAGT+TGG | 0.452434 | 1_1:+57008714 | Msa0030620:CDS |
| ATTGTGCACTGTCATCTTCA+AGG | 0.452441 | 1_1:-57005416 | None:intergenic |
| AATTACCAGGTATGGCAATT+CGG | 0.452917 | 1_1:+57007840 | Msa0030620:intron |
| ATGAAGTACGTTCTCATCTC+CGG | 0.453080 | 1_1:+57000289 | Msa0030620:CDS |
| GCAGAGTGCAGCTTGTGTCT+TGG | 0.454760 | 1_1:+57006134 | Msa0030620:intron |
| GATACCAGTGTTGGGTGTAG+TGG | 0.458939 | 1_1:+57002590 | Msa0030620:CDS |
| TCTAAAGTTTCAATAACATC+CGG | 0.459751 | 1_1:-57007993 | None:intergenic |
| GTCGTTAGCGGCCTCGGCAA+AGG | 0.462544 | 1_1:+57000316 | Msa0030620:CDS |
| AAAACTTCTCCATGTTCAAA+AGG | 0.464491 | 1_1:-57000527 | None:intergenic |
| GTCAGGGAACTAAGAGCATT+GGG | 0.465525 | 1_1:+57002727 | Msa0030620:CDS |
| CCCGAATTCAAATCTCGGCC+TGG | 0.467639 | 1_1:+57008313 | Msa0030620:CDS |
| GGAATGAATGAATGAGTTGT+AGG | 0.469905 | 1_1:-57000253 | None:intergenic |
| ATCACTAGCATTCATGAGAA+TGG | 0.472024 | 1_1:+57008745 | Msa0030620:CDS |
| GAAGCTGGGCTAAAATTTGT+TGG | 0.472530 | 1_1:+57008017 | Msa0030620:CDS |
| CATTGAGACCATCAATTGAC+TGG | 0.472847 | 1_1:+57005379 | Msa0030620:CDS |
| ATACCAGTGTTGGGTGTAGT+GGG | 0.477063 | 1_1:+57002591 | Msa0030620:CDS |
| GTAAGGAACATTGTTCTCTC+TGG | 0.480928 | 1_1:-57006214 | None:intergenic |
| GGAGGTGACGCGGAGGCCGC+AGG | 0.484019 | 1_1:-57000374 | None:intergenic |
| AACAAAGCAGATGGTCTCCC+AGG | 0.484640 | 1_1:-57008331 | None:intergenic |
| GGCGTCACCGCCAGCAGCAT+CGG | 0.487935 | 1_1:+57000337 | Msa0030620:CDS |
| TCAATCACACAAACATCAGC+AGG | 0.489125 | 1_1:-57001126 | None:intergenic |
| TACTTAGTCACTCATTATGA+AGG | 0.490591 | 1_1:+57009615 | Msa0030620:three_prime_UTR |
| CTATACTGTAGGTCTCATAT+TGG | 0.496171 | 1_1:+57008696 | Msa0030620:intron |
| CCTACATAATATGGATGACT+TGG | 0.496534 | 1_1:-57008277 | None:intergenic |
| CCCAAGCAAATCCCCAAGTA+AGG | 0.496781 | 1_1:-57006231 | None:intergenic |
| TACAGCAGCTTAACTTACTT+AGG | 0.505369 | 1_1:+57004057 | Msa0030620:CDS |
| CCGAATTCAAATCTCGGCCT+GGG | 0.505440 | 1_1:+57008314 | Msa0030620:CDS |
| TTGAAACTTTAGAAGAAGCT+GGG | 0.507446 | 1_1:+57008003 | Msa0030620:CDS |
| TGGATGAGACAGAAGTTGTC+AGG | 0.508265 | 1_1:-57002558 | None:intergenic |
| TCCTTGGTACTTTCCAGCAG+AGG | 0.508640 | 1_1:-57003734 | None:intergenic |
| TCTGGCATGAAAATTACAAC+AGG | 0.511552 | 1_1:-57006427 | None:intergenic |
| TGTCAGGGAACTAAGAGCAT+TGG | 0.513673 | 1_1:+57002726 | Msa0030620:CDS |
| TGCCGTTTATTGAGGCTCTA+CGG | 0.516145 | 1_1:+57001285 | Msa0030620:CDS |
| TTCTTAGTCTGTGCTTGAGA+AGG | 0.517567 | 1_1:+57000870 | Msa0030620:intron |
| TTCATCCCGAATTCAAATCT+CGG | 0.519745 | 1_1:+57008308 | Msa0030620:CDS |
| ACCATTAACCTGACACTCAC+AGG | 0.520204 | 1_1:+57009414 | Msa0030620:three_prime_UTR |
| GTATGGCAATTCGGAGTATG+TGG | 0.526581 | 1_1:+57007849 | Msa0030620:CDS |
| CCAGCGTCAATGTTCAAATA+CGG | 0.527929 | 1_1:-57000494 | None:intergenic |
| TGTTAGCCTGATACCAGTGT+TGG | 0.528405 | 1_1:+57002581 | Msa0030620:CDS |
| ACCAGTGTTGGGTGTAGTGG+GGG | 0.530013 | 1_1:+57002593 | Msa0030620:CDS |
| CCAAGTCATCCATATTATGT+AGG | 0.530338 | 1_1:+57008277 | Msa0030620:CDS |
| GGATGAAAGCGGAAGACGAA+TGG | 0.530600 | 1_1:+57008043 | Msa0030620:CDS |
| GTGCAACACAAGCATGCAGT+AGG | 0.531316 | 1_1:-57005353 | None:intergenic |
| TGAGTCTATGCCGTTTATTG+AGG | 0.534928 | 1_1:+57001277 | Msa0030620:CDS |
| CCACGATCTCCAAATCCTCC+TGG | 0.535514 | 1_1:-57006159 | None:intergenic |
| GAGCACGCACGTTTGGGGCA+TGG | 0.537304 | 1_1:-57009486 | None:intergenic |
| TGAGTCGGTTGCTGTGATCC+CGG | 0.538290 | 1_1:+57001086 | Msa0030620:CDS |
| ATCTCCGGCGGAGTCGTTAG+CGG | 0.542697 | 1_1:+57000304 | Msa0030620:CDS |
| GTTTGTGTGATTGAGCTTGG+AGG | 0.545170 | 1_1:+57001135 | Msa0030620:CDS |
| GTGCTACACCTCCTGATTTG+CGG | 0.545667 | 1_1:+57004710 | Msa0030620:CDS |
| TCCCTGACACTGTGTTGTGT+CGG | 0.548570 | 1_1:-57002712 | None:intergenic |
| TTTGGAGATCGTGGTGTGAG+AGG | 0.552633 | 1_1:+57006168 | Msa0030620:CDS |
| GTTAGCCTGATACCAGTGTT+GGG | 0.554596 | 1_1:+57002582 | Msa0030620:CDS |
| TCTTGATGTTACACTTACAA+AGG | 0.556810 | 1_1:+57000727 | Msa0030620:CDS |
| AGAACAATGTTCCTTACTTG+GGG | 0.557436 | 1_1:+57006220 | Msa0030620:CDS |
| TGGGCTAAAATTTGTTGGCA+GGG | 0.558448 | 1_1:+57008022 | Msa0030620:CDS |
| TGCTGTCATACCCACTTGAA+AGG | 0.561108 | 1_1:-57001315 | None:intergenic |
| AGGTCTCATATTGGCAGCAA+CGG | 0.563048 | 1_1:+57008705 | Msa0030620:intron |
| TACCAGTGTTGGGTGTAGTG+GGG | 0.563851 | 1_1:+57002592 | Msa0030620:CDS |
| ACACTGGTATCAGGCTAACA+TGG | 0.566475 | 1_1:-57002578 | None:intergenic |
| TGTGCTTGAGAAGGAGCGCA+AGG | 0.569431 | 1_1:+57000879 | Msa0030620:CDS |
| CCAGGAGGATTTGGAGATCG+TGG | 0.581850 | 1_1:+57006159 | Msa0030620:CDS |
| AATCCAGTTTCTGATTGCAT+CGG | 0.583198 | 1_1:-57001064 | None:intergenic |
| GAGCGCAAGGGAGATTATCT+CGG | 0.583903 | 1_1:+57000892 | Msa0030620:CDS |
| GTTTGTGTTTATATCCGAGC+GGG | 0.589396 | 1_1:-57000224 | None:intergenic |
| CAGGTTAGGATTGCCATGGT+GGG | 0.589890 | 1_1:+57004864 | Msa0030620:intron |
| TTATAATTATGGGTTATGAG+TGG | 0.590260 | 1_1:+57009684 | Msa0030620:three_prime_UTR |
| ATGGGAAGTACCATGAGACT+TGG | 0.591140 | 1_1:+57006543 | Msa0030620:CDS |
| TCCATGTTCAAAAGGAGACA+TGG | 0.591963 | 1_1:-57000519 | None:intergenic |
| GCAAATCAGGAGGTGTAGCA+CGG | 0.592136 | 1_1:-57004708 | None:intergenic |
| TTTACAGGTTAGGATTGCCA+TGG | 0.595375 | 1_1:+57004860 | Msa0030620:intron |
| TGCAACACAAGCATGCAGTA+GGG | 0.596048 | 1_1:-57005352 | None:intergenic |
| AAAATATCAACCTTCCCGCT+CGG | 0.598030 | 1_1:+57000210 | Msa0030620:five_prime_UTR |
| ATTGAGCTTGGAGGCACTGT+GGG | 0.598258 | 1_1:+57001144 | Msa0030620:CDS |
| TGATTGTTTGATGTGTATAG+AGG | 0.598464 | 1_1:+57009325 | Msa0030620:three_prime_UTR |
| TGGCGGTGACGCCTTTGCCG+AGG | 0.599015 | 1_1:-57000327 | None:intergenic |
| ACAGGTTAGGATTGCCATGG+TGG | 0.599284 | 1_1:+57004863 | Msa0030620:intron |
| ACGGCAATTATCCTTTCAAG+TGG | 0.601495 | 1_1:+57001304 | Msa0030620:CDS |
| CAGAAGCACATGCCGCAGCA+TGG | 0.601979 | 1_1:+57005546 | Msa0030620:CDS |
| GAGGCCGCTAACGACTCCGC+CGG | 0.602079 | 1_1:-57000308 | None:intergenic |
| GGGGCATGGTGAACTGAACA+AGG | 0.602093 | 1_1:-57009472 | None:intergenic |
| TTTAGCAAGTCGCTCTGCTG+AGG | 0.603158 | 1_1:+57002765 | Msa0030620:CDS |
| GTGTTTATATCCGAGCGGGA+AGG | 0.606105 | 1_1:-57000220 | None:intergenic |
| ACTGAAAACTTACTGGAACA+TGG | 0.606549 | 1_1:-57003775 | None:intergenic |
| CTTCAGAGTCTTCCATGCTG+CGG | 0.607051 | 1_1:-57005558 | None:intergenic |
| CTGCTGTAAAATTGAGTGGT+GGG | 0.610647 | 1_1:-57004042 | None:intergenic |
| CTGATTGCATCGGTGATATG+CGG | 0.611112 | 1_1:-57001054 | None:intergenic |
| ATTCGGAGTATGTGGATGAA+CGG | 0.613690 | 1_1:+57007857 | Msa0030620:CDS |
| GAGCGACTTGCTAAAAGATG+AGG | 0.613956 | 1_1:-57002757 | None:intergenic |
| GCTTGTGTCTTGGTTCCAGG+AGG | 0.614810 | 1_1:+57006144 | Msa0030620:CDS |
| GGTCTTCATTTCCATCAACC+GGG | 0.617073 | 1_1:-57001104 | None:intergenic |
| AAAAGGAGCACGCACGTTTG+GGG | 0.618322 | 1_1:-57009491 | None:intergenic |
| TCTTCGAGATCCAAGTCTCA+TGG | 0.624956 | 1_1:-57006553 | None:intergenic |
| TGAAAGCGGAAGACGAATGG+AGG | 0.626991 | 1_1:+57008046 | Msa0030620:CDS |
| GCCATGGTGGGAAAATATGT+TGG | 0.628848 | 1_1:+57004876 | Msa0030620:CDS |
| GTCCATTGCCGCAAATCAGG+AGG | 0.628942 | 1_1:-57004718 | None:intergenic |
| CGGCAATTATCCTTTCAAGT+GGG | 0.631841 | 1_1:+57001305 | Msa0030620:CDS |
| GCCGACACAACACAGTGTCA+GGG | 0.640779 | 1_1:+57002711 | Msa0030620:CDS |
| GCCTCTGCTGGAAAGTACCA+AGG | 0.645176 | 1_1:+57003733 | Msa0030620:intron |
| ACAGGGTTCTAGGACTCACA+TGG | 0.646100 | 1_1:+57006524 | Msa0030620:intron |
| GAGACTCACTCTAAGTAACA+GGG | 0.646615 | 1_1:-57003925 | None:intergenic |
| TGTTCTTGATGATGGCGGAG+AGG | 0.649503 | 1_1:+57000550 | Msa0030620:CDS |
| GATTGAGCTTGGAGGCACTG+TGG | 0.652060 | 1_1:+57001143 | Msa0030620:CDS |
| CGCAGCATGGAAGACTCTGA+AGG | 0.652129 | 1_1:+57005559 | Msa0030620:CDS |
| GTGCTTGAGAAGGAGCGCAA+GGG | 0.658499 | 1_1:+57000880 | Msa0030620:CDS |
| CCGTATTTGAACATTGACGC+TGG | 0.659655 | 1_1:+57000494 | Msa0030620:CDS |
| AATCAGAAACTGGATTGAGT+CGG | 0.661872 | 1_1:+57001071 | Msa0030620:CDS |
| GCTGCTGTAAAATTGAGTGG+TGG | 0.662926 | 1_1:-57004043 | None:intergenic |
| TTTGTTGGCAGGGATGAAAG+CGG | 0.667172 | 1_1:+57008032 | Msa0030620:CDS |
| AGGATAATAATATTACTACT+GGG | 0.667804 | 1_1:+57000747 | Msa0030620:CDS |
| AAGTACGTTCTCATCTCCGG+CGG | 0.672070 | 1_1:+57000292 | Msa0030620:CDS |
| TAAGCTGCTGTAAAATTGAG+TGG | 0.672139 | 1_1:-57004046 | None:intergenic |
| ATGTGTATAGAGGTCTGAAG+CGG | 0.677343 | 1_1:+57009335 | Msa0030620:three_prime_UTR |
| GACGACGCCGATGCTGCTGG+CGG | 0.688026 | 1_1:-57000344 | None:intergenic |
| GGCGTCGTCCTCAAAGCCTG+CGG | 0.692971 | 1_1:+57000358 | Msa0030620:CDS |
| CAATCACACAAACATCAGCA+GGG | 0.701082 | 1_1:-57001125 | None:intergenic |
| AGACTCACTCTAAGTAACAG+GGG | 0.704240 | 1_1:-57003924 | None:intergenic |
| CAGGGTTCTAGGACTCACAT+GGG | 0.704702 | 1_1:+57006525 | Msa0030620:intron |
| AAATTAACTTGCTTATAGTG+TGG | 0.711685 | 1_1:-57009377 | None:intergenic |
| GTCTCATATTGGCAGCAACG+GGG | 0.722190 | 1_1:+57008707 | Msa0030620:CDS |
| TAGTACTAACAGATTCAGTG+AGG | 0.746597 | 1_1:-57004765 | None:intergenic |
| ACGGCATCGTCATAGATACG+AGG | 0.761487 | 1_1:+57007876 | Msa0030620:CDS |
| TGTTTGTGTTTATATCCGAG+CGG | 0.765064 | 1_1:-57000225 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTCAATTTTAATTTATTA+TGG | + | chr1_1:57000612-57000631 | Msa0030620:intron | 10.0% |
| !! | TAATAAATTAAAGATTATCT+GGG | - | chr1_1:57003820-57003839 | None:intergenic | 10.0% |
| !! | TCTAAAAAAATTAAAAAAAG+GGG | + | chr1_1:57005258-57005277 | Msa0030620:intron | 10.0% |
| !! | TGAAGATAATATTATAATTA+TGG | + | chr1_1:57009673-57009692 | Msa0030620:three_prime_UTR | 10.0% |
| !! | GAAGATAATATTATAATTAT+GGG | + | chr1_1:57009674-57009693 | Msa0030620:three_prime_UTR | 10.0% |
| !! | CAAAAAAAAAAATTGAGAAA+CGG | - | chr1_1:57000466-57000485 | None:intergenic | 15.0% |
| !!! | ATTTTAATTTATTATGGTTC+TGG | + | chr1_1:57000618-57000637 | Msa0030620:intron | 15.0% |
| !!! | AATTTTATTTAAGATCAATC+TGG | + | chr1_1:57001661-57001680 | Msa0030620:intron | 15.0% |
| !!! | TGATGTTTTATTTGATATTA+TGG | + | chr1_1:57002270-57002289 | Msa0030620:intron | 15.0% |
| !!! | AAAAATACGTATGTTTTTAT+AGG | + | chr1_1:57002305-57002324 | Msa0030620:intron | 15.0% |
| !!! | AAAATACGTATGTTTTTATA+GGG | + | chr1_1:57002306-57002325 | Msa0030620:intron | 15.0% |
| !!! | TATAATCATTATTTTGCATT+TGG | + | chr1_1:57003005-57003024 | Msa0030620:intron | 15.0% |
| !! | AATAAAGATTAAAAGTTTGT+CGG | - | chr1_1:57003145-57003164 | None:intergenic | 15.0% |
| !! | CTAATAAATTAAAGATTATC+TGG | - | chr1_1:57003821-57003840 | None:intergenic | 15.0% |
| !!! | TCAAATTTTTTCATCAATTA+AGG | - | chr1_1:57004228-57004247 | None:intergenic | 15.0% |
| !!! | ATATTTTTTTCGTTTAAATC+TGG | + | chr1_1:57005063-57005082 | Msa0030620:intron | 15.0% |
| !! | AAATTGCATTTAAAGAAATT+TGG | + | chr1_1:57005456-57005475 | Msa0030620:intron | 15.0% |
| !!! | GCTTATTTAATTTTATTTTG+TGG | + | chr1_1:57005505-57005524 | Msa0030620:intron | 15.0% |
| !!! | GTAATTTAAAATCTATTCTT+AGG | + | chr1_1:57006351-57006370 | Msa0030620:intron | 15.0% |
| !!! | ATTTTATGTAAATGAATATC+AGG | + | chr1_1:57006853-57006872 | Msa0030620:intron | 15.0% |
| !! | AATAGTAGAATATATTACTT+TGG | + | chr1_1:57007026-57007045 | Msa0030620:intron | 15.0% |
| !!! | TCATTAAGAAACATTTTAAA+CGG | + | chr1_1:57009639-57009658 | Msa0030620:three_prime_UTR | 15.0% |
| !!! | TTTTGCTTTTTGACTTTTAT+AGG | + | chr1_1:57000673-57000692 | Msa0030620:intron | 20.0% |
| !! | AAGGATAATAATATTACTAC+TGG | + | chr1_1:57000746-57000765 | Msa0030620:CDS | 20.0% |
| !! | AGGATAATAATATTACTACT+GGG | + | chr1_1:57000747-57000766 | Msa0030620:CDS | 20.0% |
| !!! | TTTATGTTGATTTTGCTTTA+TGG | + | chr1_1:57000834-57000853 | Msa0030620:intron | 20.0% |
| !!! | TGATATTTTTGTTGATCTAT+AGG | + | chr1_1:57001248-57001267 | Msa0030620:intron | 20.0% |
| !!! | GATATTTTTGTTGATCTATA+GGG | + | chr1_1:57001249-57001268 | Msa0030620:intron | 20.0% |
| !!! | ATATTTTTGTTGATCTATAG+GGG | + | chr1_1:57001250-57001269 | Msa0030620:intron | 20.0% |
| !! | TCTTTACCTTTAGTATTATA+TGG | - | chr1_1:57001489-57001508 | None:intergenic | 20.0% |
| !! | TACATATAATCCAAATACTT+AGG | + | chr1_1:57001600-57001619 | Msa0030620:intron | 20.0% |
| !!! | ATAATTCTATGTACCATTTT+TGG | + | chr1_1:57001690-57001709 | Msa0030620:intron | 20.0% |
| !! | TGCTTAAATTTCAAATGTAT+TGG | + | chr1_1:57001798-57001817 | Msa0030620:intron | 20.0% |
| !! | TCTTAAAAGATGTACATTTA+TGG | + | chr1_1:57002148-57002167 | Msa0030620:intron | 20.0% |
| !! | TTTATTTGATATTATGGCAT+TGG | + | chr1_1:57002276-57002295 | Msa0030620:intron | 20.0% |
| !!! | AGTTAATTTTAAATGCATCT+AGG | - | chr1_1:57002813-57002832 | None:intergenic | 20.0% |
| !! | TAAAATTAACTGTGTAACTA+TGG | + | chr1_1:57002822-57002841 | Msa0030620:intron | 20.0% |
| !! | AGATAATATATTTCTCTGTT+TGG | + | chr1_1:57003207-57003226 | Msa0030620:intron | 20.0% |
| !! | GTAAATCAATAAATAGATTG+TGG | + | chr1_1:57003373-57003392 | Msa0030620:intron | 20.0% |
| !!! | TTGTCTTTTATTTTCATAAC+TGG | + | chr1_1:57004092-57004111 | Msa0030620:intron | 20.0% |
| !! | AAAAACTATAAGTCATATGT+TGG | + | chr1_1:57004506-57004525 | Msa0030620:intron | 20.0% |
| !! | TTCATATTTATCTGTTGTAA+AGG | + | chr1_1:57004908-57004927 | Msa0030620:CDS | 20.0% |
| !! | AATCCAAATATGTTGATATT+CGG | - | chr1_1:57005224-57005243 | None:intergenic | 20.0% |
| !!! | AAATTAAAAAAAGGGGTTTT+TGG | + | chr1_1:57005265-57005284 | Msa0030620:intron | 20.0% |
| !! | ATCATAGATATTAAAGCAAT+GGG | - | chr1_1:57005728-57005747 | None:intergenic | 20.0% |
| !! | ACAAAATTTCAGATTCAATA+TGG | - | chr1_1:57005974-57005993 | None:intergenic | 20.0% |
| !! | TGTAATGACAATATTTGTTT+GGG | + | chr1_1:57006099-57006118 | Msa0030620:intron | 20.0% |
| !!! | TAAAATCTATTCTTAGGTTT+TGG | + | chr1_1:57006357-57006376 | Msa0030620:intron | 20.0% |
| !!! | AAAATCTATTCTTAGGTTTT+GGG | + | chr1_1:57006358-57006377 | Msa0030620:intron | 20.0% |
| !!! | TGTAGTGTTTTAATAATTGA+TGG | + | chr1_1:57006638-57006657 | Msa0030620:intron | 20.0% |
| !! | GAAAAAAAAAGTTATCTGAT+GGG | - | chr1_1:57006720-57006739 | None:intergenic | 20.0% |
| !! | AGAAAAAAAAAGTTATCTGA+TGG | - | chr1_1:57006721-57006740 | None:intergenic | 20.0% |
| !!! | GATAACTTTTTTTTTCTTTC+TGG | + | chr1_1:57006724-57006743 | Msa0030620:intron | 20.0% |
| !! | GTAATATATTCTACTATTGT+GGG | - | chr1_1:57007024-57007043 | None:intergenic | 20.0% |
| !! | AGTAATATATTCTACTATTG+TGG | - | chr1_1:57007025-57007044 | None:intergenic | 20.0% |
| !! | TGTATACAACATTAATTAGA+GGG | + | chr1_1:57007052-57007071 | Msa0030620:intron | 20.0% |
| !!! | TAAATTCTTTAGGATTACAA+AGG | - | chr1_1:57007363-57007382 | None:intergenic | 20.0% |
| !!! | AGATTTGAAAAAGTTGATTT+TGG | + | chr1_1:57007429-57007448 | Msa0030620:intron | 20.0% |
| !! | GGAAAAGATGTAATATAATT+AGG | + | chr1_1:57007532-57007551 | Msa0030620:intron | 20.0% |
| !!! | TAATATAATTAGGAGTATGT+TGG | + | chr1_1:57007542-57007561 | Msa0030620:intron | 20.0% |
| !! | ACAATCAATTGAAGAATATA+TGG | - | chr1_1:57007712-57007731 | None:intergenic | 20.0% |
| !! | TCAATACTAAATTAGAAAAC+AGG | - | chr1_1:57007957-57007976 | None:intergenic | 20.0% |
| !! | GCTTATAATTTCTTGAAAAA+TGG | + | chr1_1:57008571-57008590 | Msa0030620:intron | 20.0% |
| !!! | ATTTCTACATTACTTTTCTA+AGG | + | chr1_1:57008800-57008819 | Msa0030620:three_prime_UTR | 20.0% |
| !! | ACAAATTATGTTAAATCAGA+AGG | - | chr1_1:57009261-57009280 | None:intergenic | 20.0% |
| ! | AGTTTCATTTCATTTCATCT+TGG | + | chr1_1:57000162-57000181 | Msa0030620:five_prime_UTR | 25.0% |
| ! | GTTTCATTTCATTTCATCTT+GGG | + | chr1_1:57000163-57000182 | Msa0030620:five_prime_UTR | 25.0% |
| !! | AGAACGTACTTCATATTTTT+GGG | - | chr1_1:57000283-57000302 | None:intergenic | 25.0% |
| !!! | TTGACTTTTATAGGTTGATT+TGG | + | chr1_1:57000682-57000701 | Msa0030620:intron | 25.0% |
| !!! | TTTATAGGTTGATTTGGATT+TGG | + | chr1_1:57000688-57000707 | Msa0030620:intron | 25.0% |
| !!! | TTATAGGTTGATTTGGATTT+GGG | + | chr1_1:57000689-57000708 | Msa0030620:intron | 25.0% |
| !! | GCTTGTTTCATTTTATGTTA+TGG | + | chr1_1:57000788-57000807 | Msa0030620:intron | 25.0% |
| !!! | TGAATAATGGATATTTTGTG+TGG | + | chr1_1:57000978-57000997 | Msa0030620:intron | 25.0% |
| !!! | TTTAGTATTATATGGACTAG+AGG | - | chr1_1:57001481-57001500 | None:intergenic | 25.0% |
| ! | TCTAGTCCATATAATACTAA+AGG | + | chr1_1:57001480-57001499 | Msa0030620:intron | 25.0% |
| !! | ACAAGTAATGTCAATTTTGT+TGG | + | chr1_1:57001562-57001581 | Msa0030620:intron | 25.0% |
| ! | CATTAGTACTATACCAAAAA+TGG | - | chr1_1:57001706-57001725 | None:intergenic | 25.0% |
| !! | ACATTTGAAATTTAAGCACA+TGG | - | chr1_1:57001796-57001815 | None:intergenic | 25.0% |
| ! | TATTGGTAGACTTCTTAAAT+TGG | + | chr1_1:57002097-57002116 | Msa0030620:intron | 25.0% |
| ! | TACATTTATGGATGTTTAGA+AGG | + | chr1_1:57002160-57002179 | Msa0030620:intron | 25.0% |
| !! | AGTCAAGACTTCTTTTAAAT+AGG | + | chr1_1:57002242-57002261 | Msa0030620:intron | 25.0% |
| ! | GTAAACATCAATAATTCATG+TGG | - | chr1_1:57002941-57002960 | None:intergenic | 25.0% |
| ! | TTGGTTAATCTATAACTCAA+CGG | + | chr1_1:57003081-57003100 | Msa0030620:intron | 25.0% |
| ! | TTAGTGAATGTTTGTGATAT+TGG | + | chr1_1:57003323-57003342 | Msa0030620:intron | 25.0% |
| ! | TAGTGAATGTTTGTGATATT+GGG | + | chr1_1:57003324-57003343 | Msa0030620:intron | 25.0% |
| ! | TATTGCCTCATTCTATATTT+AGG | + | chr1_1:57003546-57003565 | Msa0030620:intron | 25.0% |
| ! | ATTCTCCTAAATATAGAATG+AGG | - | chr1_1:57003554-57003573 | None:intergenic | 25.0% |
| !!! | TTTTTTACCATGAAGTTAAC+TGG | + | chr1_1:57003610-57003629 | Msa0030620:intron | 25.0% |
| ! | ATAATTCACTGAAAACTTAC+TGG | - | chr1_1:57003785-57003804 | None:intergenic | 25.0% |
| !! | TTTTCTGTATATTGTTTCAC+AGG | + | chr1_1:57003854-57003873 | Msa0030620:intron | 25.0% |
| ! | TTCATGATGTACCAAATATT+TGG | + | chr1_1:57003895-57003914 | Msa0030620:CDS | 25.0% |
| ! | TAAAAATAGCCAAGATACAA+TGG | - | chr1_1:57003967-57003986 | None:intergenic | 25.0% |
| ! | CAACAATATTGTAATAAGAG+AGG | - | chr1_1:57004172-57004191 | None:intergenic | 25.0% |
| !!! | TTTTTTCATCAATTAAGGCA+AGG | - | chr1_1:57004223-57004242 | None:intergenic | 25.0% |
| !!! | CATTTTGAAATTTACAGGTT+AGG | + | chr1_1:57004850-57004869 | Msa0030620:intron | 25.0% |
| ! | CAGGATATCAATATATGTTA+TGG | + | chr1_1:57004969-57004988 | Msa0030620:intron | 25.0% |
| ! | TTAAAACTGCTATCACTTAT+TGG | + | chr1_1:57005152-57005171 | Msa0030620:intron | 25.0% |
| ! | AAGTTTAGTCTATTCTATCT+AGG | + | chr1_1:57005613-57005632 | Msa0030620:intron | 25.0% |
| ! | ATCACATAACTAAAATCTGA+AGG | - | chr1_1:57005652-57005671 | None:intergenic | 25.0% |
| ! | TCATAGATATTAAAGCAATG+GGG | - | chr1_1:57005727-57005746 | None:intergenic | 25.0% |
| ! | GATCATAGATATTAAAGCAA+TGG | - | chr1_1:57005729-57005748 | None:intergenic | 25.0% |
| ! | GGATTTCTTAGAATTTAGAT+CGG | + | chr1_1:57005777-57005796 | Msa0030620:intron | 25.0% |
| ! | GATTTCTTAGAATTTAGATC+GGG | + | chr1_1:57005778-57005797 | Msa0030620:intron | 25.0% |
| !!! | TGTTTACAAGTCAGTTTTTT+AGG | - | chr1_1:57005814-57005833 | None:intergenic | 25.0% |
| ! | TTTGTACTGTATTAATCATG+TGG | - | chr1_1:57006056-57006075 | None:intergenic | 25.0% |
| ! | CTGTAATGACAATATTTGTT+TGG | + | chr1_1:57006098-57006117 | Msa0030620:intron | 25.0% |
| ! | GTAATGACAATATTTGTTTG+GGG | + | chr1_1:57006100-57006119 | Msa0030620:intron | 25.0% |
| ! | ATGAAAATTACAACAGGATT+TGG | - | chr1_1:57006424-57006443 | None:intergenic | 25.0% |
| ! | AAACACACCAATAGTTATTA+GGG | - | chr1_1:57007001-57007020 | None:intergenic | 25.0% |
| ! | GTGTATACAACATTAATTAG+AGG | + | chr1_1:57007051-57007070 | Msa0030620:intron | 25.0% |
| ! | TATTGCATTTCAAATGTGAT+TGG | + | chr1_1:57007170-57007189 | Msa0030620:intron | 25.0% |
| ! | ATTGCATTTCAAATGTGATT+GGG | + | chr1_1:57007171-57007190 | Msa0030620:intron | 25.0% |
| ! | ATAAAAAAATTCCACAACAC+AGG | - | chr1_1:57007667-57007686 | None:intergenic | 25.0% |
| ! | ATCAATTGAAGAATATATGG+AGG | - | chr1_1:57007709-57007728 | None:intergenic | 25.0% |
| ! | GTTGTATTATACTGTTTAGT+TGG | + | chr1_1:57007742-57007761 | Msa0030620:intron | 25.0% |
| ! | AACAGATGAAGATATTAACA+TGG | - | chr1_1:57007817-57007836 | None:intergenic | 25.0% |
| !!! | TAACCTTTGTTTTTAGTTAC+TGG | + | chr1_1:57007908-57007927 | Msa0030620:intron | 25.0% |
| !!! | ATTTAGTATTGACATTGTTC+AGG | + | chr1_1:57007965-57007984 | Msa0030620:intron | 25.0% |
| !! | TCTAAAGTTTCAATAACATC+CGG | - | chr1_1:57007996-57008015 | None:intergenic | 25.0% |
| ! | TTATAAGCATCAATTCACAT+GGG | - | chr1_1:57008559-57008578 | None:intergenic | 25.0% |
| ! | ATTATAAGCATCAATTCACA+TGG | - | chr1_1:57008560-57008579 | None:intergenic | 25.0% |
| ! | GAGTAGAAATAATTGAAACA+GGG | - | chr1_1:57008653-57008672 | None:intergenic | 25.0% |
| !! | AAGGTAAATTGATTCTCTTT+AGG | + | chr1_1:57008819-57008838 | Msa0030620:intron | 25.0% |
| !! | AGGTAAATTGATTCTCTTTA+GGG | + | chr1_1:57008820-57008839 | Msa0030620:intron | 25.0% |
| !! | TTCTCTTTAGGGAAAATAAT+TGG | + | chr1_1:57008831-57008850 | Msa0030620:intron | 25.0% |
| !! | TCTCTTTAGGGAAAATAATT+GGG | + | chr1_1:57008832-57008851 | Msa0030620:intron | 25.0% |
| ! | ATTATAAATCTCAGAACTTC+TGG | - | chr1_1:57009016-57009035 | None:intergenic | 25.0% |
| ! | TTAGTAATAGAGATGCTAAA+AGG | + | chr1_1:57009054-57009073 | Msa0030620:intron | 25.0% |
| !! | ACTGGTATTGAAAACAATTA+CGG | + | chr1_1:57009085-57009104 | Msa0030620:intron | 25.0% |
| !!! | AAATTAACTTGCTTATAGTG+TGG | - | chr1_1:57009380-57009399 | None:intergenic | 25.0% |
| !!! | TACTTCATATTTTTGGGTTG+GGG | - | chr1_1:57000277-57000296 | None:intergenic | 30.0% |
| !!! | GTACTTCATATTTTTGGGTT+GGG | - | chr1_1:57000278-57000297 | None:intergenic | 30.0% |
| ! | GAGAACGTACTTCATATTTT+TGG | - | chr1_1:57000284-57000303 | None:intergenic | 30.0% |
| AAAACTTCTCCATGTTCAAA+AGG | - | chr1_1:57000530-57000549 | None:intergenic | 30.0% | |
| ! | GAAGTTTTTGTTCTTGATGA+TGG | + | chr1_1:57000542-57000561 | Msa0030620:CDS | 30.0% |
| ACTTCGTACAAGTGTATTTA+TGG | - | chr1_1:57000595-57000614 | None:intergenic | 30.0% | |
| TCTTGATGTTACACTTACAA+AGG | + | chr1_1:57000727-57000746 | Msa0030620:CDS | 30.0% | |
| TACTACTGGGAAAATATATC+AGG | + | chr1_1:57000760-57000779 | Msa0030620:CDS | 30.0% | |
| GTTAACTGATTGCTGAATAA+TGG | + | chr1_1:57000965-57000984 | Msa0030620:intron | 30.0% | |
| ! | GTTGGGATTTTTGATGAAAT+AGG | + | chr1_1:57001026-57001045 | Msa0030620:intron | 30.0% |
| TTATGCTCTTTCATAATCGA+TGG | - | chr1_1:57001228-57001247 | None:intergenic | 30.0% | |
| AGTAGTTAAAACGTGTACAT+GGG | - | chr1_1:57001386-57001405 | None:intergenic | 30.0% | |
| TAGTAGTTAAAACGTGTACA+TGG | - | chr1_1:57001387-57001406 | None:intergenic | 30.0% | |
| !!! | TACACGTTTTAACTACTACA+TGG | + | chr1_1:57001389-57001408 | Msa0030620:intron | 30.0% |
| AAGTTATTGACCAATACATC+TGG | + | chr1_1:57001876-57001895 | Msa0030620:intron | 30.0% | |
| AGTTATTGACCAATACATCT+GGG | + | chr1_1:57001877-57001896 | Msa0030620:intron | 30.0% | |
| GAAATAAAATGCACCCAAAA+AGG | + | chr1_1:57001971-57001990 | Msa0030620:intron | 30.0% | |
| !!! | TAAAAGCATCAAGCCTTTTT+GGG | - | chr1_1:57001987-57002006 | None:intergenic | 30.0% |
| !!! | ATAAAAGCATCAAGCCTTTT+TGG | - | chr1_1:57001988-57002007 | None:intergenic | 30.0% |
| ! | TTTTCTCTCCTTTAGTGTAT+CGG | - | chr1_1:57002053-57002072 | None:intergenic | 30.0% |
| AAATTGGTAGAACTATCTCT+TGG | + | chr1_1:57002113-57002132 | Msa0030620:intron | 30.0% | |
| !! | TTGATATTATGGCATTGGTT+TGG | + | chr1_1:57002281-57002300 | Msa0030620:intron | 30.0% |
| !! | TGATATTATGGCATTGGTTT+GGG | + | chr1_1:57002282-57002301 | Msa0030620:intron | 30.0% |
| TGGTTAATCTATAACTCAAC+GGG | + | chr1_1:57003082-57003101 | Msa0030620:intron | 30.0% | |
| ! | GAGGCAATAATCCTTTAAAA+AGG | - | chr1_1:57003535-57003554 | None:intergenic | 30.0% |
| CTATATTTAGGAGAATACAG+TGG | + | chr1_1:57003558-57003577 | Msa0030620:intron | 30.0% | |
| ATAATCTCCAGTTAACTTCA+TGG | - | chr1_1:57003620-57003639 | None:intergenic | 30.0% | |
| ! | TGATGTTAGTTTCACTATCT+CGG | + | chr1_1:57003682-57003701 | Msa0030620:intron | 30.0% |
| ! | AAACTGTGAAAGTTTTTCCT+TGG | - | chr1_1:57003753-57003772 | None:intergenic | 30.0% |
| ! | AGTTTTCAGTGAATTATGCT+TGG | + | chr1_1:57003788-57003807 | Msa0030620:intron | 30.0% |
| !! | TTTTTAGTGCCATTGTATCT+TGG | + | chr1_1:57003955-57003974 | Msa0030620:intron | 30.0% |
| ! | ATTGTTTTCCTCTTAATGTC+CGG | + | chr1_1:57003996-57004015 | Msa0030620:intron | 30.0% |
| ! | TTGATTCTGAAAATAGAAGC+CGG | - | chr1_1:57004018-57004037 | None:intergenic | 30.0% |
| !! | AGATAAACTCAAGTTGACAA+CGG | - | chr1_1:57004345-57004364 | None:intergenic | 30.0% |
| CATATGTTGGAATCTCTTAA+TGG | + | chr1_1:57004519-57004538 | Msa0030620:intron | 30.0% | |
| AATTGAAACACGTCATATGT+TGG | + | chr1_1:57004570-57004589 | Msa0030620:intron | 30.0% | |
| !!! | CAGAGCATTTTGAAATTTAC+AGG | + | chr1_1:57004845-57004864 | Msa0030620:intron | 30.0% |
| GTTCTTGGGATAAATATCAA+GGG | - | chr1_1:57004947-57004966 | None:intergenic | 30.0% | |
| TGTTCTTGGGATAAATATCA+AGG | - | chr1_1:57004948-57004967 | None:intergenic | 30.0% | |
| ! | TGAATATGGCATCAAACTTT+TGG | - | chr1_1:57005095-57005114 | None:intergenic | 30.0% |
| CAGATTATTGCTAGTGAATA+TGG | - | chr1_1:57005109-57005128 | None:intergenic | 30.0% | |
| !! | ATCTGATTTTGACATCTTTG+CGG | + | chr1_1:57005124-57005143 | Msa0030620:intron | 30.0% |
| ! | CTAGAAGCACATACAATTTA+TGG | + | chr1_1:57005590-57005609 | Msa0030620:intron | 30.0% |
| TCTATTCTATCTAGGAAGTT+TGG | + | chr1_1:57005621-57005640 | Msa0030620:intron | 30.0% | |
| TGGACTTTCTGTGATAAAAT+TGG | + | chr1_1:57005756-57005775 | Msa0030620:intron | 30.0% | |
| ! | TATCTAGAGTGTGATCTTAT+TGG | + | chr1_1:57005905-57005924 | Msa0030620:intron | 30.0% |
| ! | TGATCTTATTGGCCTAATAA+TGG | + | chr1_1:57005916-57005935 | Msa0030620:intron | 30.0% |
| ! | GATCTTATTGGCCTAATAAT+GGG | + | chr1_1:57005917-57005936 | Msa0030620:intron | 30.0% |
| GTAAATACTACTATCCAATG+TGG | + | chr1_1:57006024-57006043 | Msa0030620:intron | 30.0% | |
| CACAACAAGGATAATGATTA+GGG | - | chr1_1:57006487-57006506 | None:intergenic | 30.0% | |
| TCACAACAAGGATAATGATT+AGG | - | chr1_1:57006488-57006507 | None:intergenic | 30.0% | |
| AATATGGCTTATCTGTGAAA+GGG | - | chr1_1:57006692-57006711 | None:intergenic | 30.0% | |
| AAATATGGCTTATCTGTGAA+AGG | - | chr1_1:57006693-57006712 | None:intergenic | 30.0% | |
| TATCTGATGGGAAAGAAATA+TGG | - | chr1_1:57006708-57006727 | None:intergenic | 30.0% | |
| ! | AAATCTCAGTTTTCTTGTTC+TGG | + | chr1_1:57006764-57006783 | Msa0030620:intron | 30.0% |
| ! | AATCTCAGTTTTCTTGTTCT+GGG | + | chr1_1:57006765-57006784 | Msa0030620:intron | 30.0% |
| TACATAAAATGATTCCCTGA+TGG | - | chr1_1:57006843-57006862 | None:intergenic | 30.0% | |
| ATCACAGAACATAATGAATC+AGG | - | chr1_1:57006879-57006898 | None:intergenic | 30.0% | |
| TTAGGGGTAGTTTAGTAAAA+GGG | - | chr1_1:57006984-57007003 | None:intergenic | 30.0% | |
| ATTAGGGGTAGTTTAGTAAA+AGG | - | chr1_1:57006985-57007004 | None:intergenic | 30.0% | |
| AAACTACCCCTAATAACTAT+TGG | + | chr1_1:57006991-57007010 | Msa0030620:intron | 30.0% | |
| AACACACCAATAGTTATTAG+GGG | - | chr1_1:57007000-57007019 | None:intergenic | 30.0% | |
| GAAACACACCAATAGTTATT+AGG | - | chr1_1:57007002-57007021 | None:intergenic | 30.0% | |
| !!! | CTGAGACACTTATTTTGAAA+CGG | + | chr1_1:57007141-57007160 | Msa0030620:intron | 30.0% |
| ATTCTTCCTTACTGTAGATA+AGG | + | chr1_1:57007205-57007224 | Msa0030620:intron | 30.0% | |
| TTCTTCCTTACTGTAGATAA+GGG | + | chr1_1:57007206-57007225 | Msa0030620:intron | 30.0% | |
| !!! | TTCTTTTTTCACCTTTTGCT+AGG | - | chr1_1:57007311-57007330 | None:intergenic | 30.0% |
| GAGGTAGTAGTAAATTCTTT+AGG | - | chr1_1:57007373-57007392 | None:intergenic | 30.0% | |
| ! | AAGTAATTTTCTCTCCTGAA+GGG | - | chr1_1:57007478-57007497 | None:intergenic | 30.0% |
| ! | TAAGTAATTTTCTCTCCTGA+AGG | - | chr1_1:57007479-57007498 | None:intergenic | 30.0% |
| GAGTATTTATTACAGATTGC+AGG | + | chr1_1:57007511-57007530 | Msa0030620:intron | 30.0% | |
| GATGTCGTTGAAAATTTGAA+TGG | + | chr1_1:57007578-57007597 | Msa0030620:intron | 30.0% | |
| ! | TTGAATGGAGTCTTATAAGA+AGG | + | chr1_1:57007593-57007612 | Msa0030620:intron | 30.0% |
| ! | TGAATGGAGTCTTATAAGAA+GGG | + | chr1_1:57007594-57007613 | Msa0030620:intron | 30.0% |
| ! | AAGAAGGGGAAATGATATTT+TGG | + | chr1_1:57007609-57007628 | Msa0030620:intron | 30.0% |
| !!! | GAAATGATATTTTGGAACTG+AGG | + | chr1_1:57007617-57007636 | Msa0030620:intron | 30.0% |
| TATAATGAAAACCTGTGTTG+TGG | + | chr1_1:57007653-57007672 | Msa0030620:intron | 30.0% | |
| CAGTATAATACAACACACAA+AGG | - | chr1_1:57007736-57007755 | None:intergenic | 30.0% | |
| CATCCAGTAACTAAAAACAA+AGG | - | chr1_1:57007914-57007933 | None:intergenic | 30.0% | |
| ! | ATTGAAACTTTAGAAGAAGC+TGG | + | chr1_1:57008002-57008021 | Msa0030620:CDS | 30.0% |
| ! | TTGAAACTTTAGAAGAAGCT+GGG | + | chr1_1:57008003-57008022 | Msa0030620:CDS | 30.0% |
| ! | TATATTTTCCTGCTTGGATA+GGG | + | chr1_1:57008069-57008088 | Msa0030620:intron | 30.0% |
| ! | GGTACTTTTCAGTTATGAAT+TGG | + | chr1_1:57008358-57008377 | Msa0030620:intron | 30.0% |
| ATTAACACAGATGGTGTAAA+CGG | - | chr1_1:57008429-57008448 | None:intergenic | 30.0% | |
| TTAATACTGTGAGATGAAGA+TGG | + | chr1_1:57008444-57008463 | Msa0030620:intron | 30.0% | |
| ATCAATTCACATGGGAATTT+CGG | - | chr1_1:57008551-57008570 | None:intergenic | 30.0% | |
| CGAGTAGAAATAATTGAAAC+AGG | - | chr1_1:57008654-57008673 | None:intergenic | 30.0% | |
| GATCTACGATTCTTTACTAT+AGG | + | chr1_1:57008773-57008792 | Msa0030620:exon | 30.0% | |
| AAGCTATACAACTAAGGAAA+AGG | - | chr1_1:57009212-57009231 | None:intergenic | 30.0% | |
| ! | TAAATCAGAAGGCATGATAT+TGG | - | chr1_1:57009250-57009269 | None:intergenic | 30.0% |
| TGATTGTTTGATGTGTATAG+AGG | + | chr1_1:57009325-57009344 | Msa0030620:three_prime_UTR | 30.0% | |
| TTAGCGAGCATAAAAAGAAA+AGG | - | chr1_1:57009511-57009530 | None:intergenic | 30.0% | |
| ! | TCTTTTTATGCTCGCTAATT+AGG | + | chr1_1:57009513-57009532 | Msa0030620:three_prime_UTR | 30.0% |
| TACTTAGTCACTCATTATGA+AGG | + | chr1_1:57009615-57009634 | Msa0030620:three_prime_UTR | 30.0% | |
| TGTTTGTGTTTATATCCGAG+CGG | - | chr1_1:57000228-57000247 | None:intergenic | 35.0% | |
| GGAATGAATGAATGAGTTGT+AGG | - | chr1_1:57000256-57000275 | None:intergenic | 35.0% | |
| !!! | CGTACTTCATATTTTTGGGT+TGG | - | chr1_1:57000279-57000298 | None:intergenic | 35.0% |
| !!! | GTTTTTGTTCTTGATGATGG+CGG | + | chr1_1:57000545-57000564 | Msa0030620:CDS | 35.0% |
| TTATCTCGGAAAAACTGTTC+AGG | + | chr1_1:57000906-57000925 | Msa0030620:CDS | 35.0% | |
| AGATGAAGTTTCTGAGTTGT+TGG | + | chr1_1:57001008-57001027 | Msa0030620:intron | 35.0% | |
| GATGAAGTTTCTGAGTTGTT+GGG | + | chr1_1:57001009-57001028 | Msa0030620:intron | 35.0% | |
| ! | GGGATTTTTGATGAAATAGG+TGG | + | chr1_1:57001029-57001048 | Msa0030620:intron | 35.0% |
| AATCCAGTTTCTGATTGCAT+CGG | - | chr1_1:57001067-57001086 | None:intergenic | 35.0% | |
| AATCAGAAACTGGATTGAGT+CGG | + | chr1_1:57001071-57001090 | Msa0030620:CDS | 35.0% | |
| GTAGTTAAAACGTGTACATG+GGG | - | chr1_1:57001385-57001404 | None:intergenic | 35.0% | |
| AAGTCATATCCCAGATGTAT+TGG | - | chr1_1:57001889-57001908 | None:intergenic | 35.0% | |
| GGATATGACTTTGATACTTC+AGG | + | chr1_1:57001898-57001917 | Msa0030620:intron | 35.0% | |
| GATACTTCAGGATACACTAT+TGG | + | chr1_1:57001910-57001929 | Msa0030620:intron | 35.0% | |
| AAAGATGACCGATACACTAA+AGG | + | chr1_1:57002042-57002061 | Msa0030620:intron | 35.0% | |
| GATACACTAAAGGAGAGAAA+AGG | + | chr1_1:57002052-57002071 | Msa0030620:intron | 35.0% | |
| TTTATGGATGTTTAGAAGGC+TGG | + | chr1_1:57002164-57002183 | Msa0030620:intron | 35.0% | |
| ! | TACGATCACTAGTTTCTCTT+TGG | + | chr1_1:57002380-57002399 | Msa0030620:intron | 35.0% |
| TACTCTCATTATTCCTTCTC+AGG | + | chr1_1:57002534-57002553 | Msa0030620:intron | 35.0% | |
| ACTCTCATTATTCCTTCTCA+GGG | + | chr1_1:57002535-57002554 | Msa0030620:intron | 35.0% | |
| AGGTATATTATTGCACCAGT+TGG | + | chr1_1:57002785-57002804 | Msa0030620:intron | 35.0% | |
| GTACTACAACCTAAAGACTT+TGG | - | chr1_1:57002853-57002872 | None:intergenic | 35.0% | |
| TTACCACAGTTACGAAATTC+AGG | + | chr1_1:57002957-57002976 | Msa0030620:intron | 35.0% | |
| !! | CTTTAAAGTCGCATAGACTT+GGG | - | chr1_1:57003061-57003080 | None:intergenic | 35.0% |
| !! | ACTTTAAAGTCGCATAGACT+TGG | - | chr1_1:57003062-57003081 | None:intergenic | 35.0% |
| !! | AGTCTATGCGACTTTAAAGT+TGG | + | chr1_1:57003062-57003081 | Msa0030620:intron | 35.0% |
| !!! | GTTCACTGCAGTGTTTTAAT+AGG | - | chr1_1:57003262-57003281 | None:intergenic | 35.0% |
| ACTGCAGTGAACTTTAGTAA+GGG | + | chr1_1:57003270-57003289 | Msa0030620:intron | 35.0% | |
| ACTTTAGTAAGGGTAATGCT+AGG | + | chr1_1:57003280-57003299 | Msa0030620:intron | 35.0% | |
| ACCAAGAAACCAAATTTCCT+CGG | - | chr1_1:57003355-57003374 | None:intergenic | 35.0% | |
| ATTGTGGTTGTTAAGACCAA+AGG | + | chr1_1:57003389-57003408 | Msa0030620:intron | 35.0% | |
| TTGTGGTTGTTAAGACCAAA+GGG | + | chr1_1:57003390-57003409 | Msa0030620:intron | 35.0% | |
| AAGCTACTTATGTGCTTATG+TGG | + | chr1_1:57003436-57003455 | Msa0030620:intron | 35.0% | |
| TTTGACAACTTATGTGACAC+TGG | + | chr1_1:57003460-57003479 | Msa0030620:intron | 35.0% | |
| TTGCTTCTCCAATGAGATTA+TGG | + | chr1_1:57003491-57003510 | Msa0030620:intron | 35.0% | |
| TTGTCAGACCATAATCTCAT+TGG | - | chr1_1:57003502-57003521 | None:intergenic | 35.0% | |
| ! | ATCAAGCGACTCCTTTTTAA+AGG | + | chr1_1:57003521-57003540 | Msa0030620:intron | 35.0% |
| ACTGAAAACTTACTGGAACA+TGG | - | chr1_1:57003778-57003797 | None:intergenic | 35.0% | |
| AGGGGAATATGCCAAATATT+TGG | - | chr1_1:57003909-57003928 | None:intergenic | 35.0% | |
| TAAGCTGCTGTAAAATTGAG+TGG | - | chr1_1:57004049-57004068 | None:intergenic | 35.0% | |
| TACAGCAGCTTAACTTACTT+AGG | + | chr1_1:57004057-57004076 | Msa0030620:CDS | 35.0% | |
| !! | GATAAACTCAAGTTGACAAC+GGG | - | chr1_1:57004344-57004363 | None:intergenic | 35.0% |
| ! | TAGCATAAGCACAAGTCTTT+TGG | + | chr1_1:57004394-57004413 | Msa0030620:intron | 35.0% |
| !!! | AAGCACAAGTCTTTTGGTTT+TGG | + | chr1_1:57004400-57004419 | Msa0030620:intron | 35.0% |
| !!! | AGCACAAGTCTTTTGGTTTT+GGG | + | chr1_1:57004401-57004420 | Msa0030620:intron | 35.0% |
| GTCATATGTTGGTCATACTT+GGG | + | chr1_1:57004581-57004600 | Msa0030620:intron | 35.0% | |
| TAGTACTAACAGATTCAGTG+AGG | - | chr1_1:57004768-57004787 | None:intergenic | 35.0% | |
| ATATTTATCCCAAGAACAGC+AGG | + | chr1_1:57004950-57004969 | Msa0030620:intron | 35.0% | |
| ATTGATATCCTGCTGTTCTT+GGG | - | chr1_1:57004961-57004980 | None:intergenic | 35.0% | |
| TATTGATATCCTGCTGTTCT+TGG | - | chr1_1:57004962-57004981 | None:intergenic | 35.0% | |
| CTGCCGAATATCAACATATT+TGG | + | chr1_1:57005218-57005237 | Msa0030620:intron | 35.0% | |
| TTGGTTTCTTCTCATTATGC+AGG | + | chr1_1:57005475-57005494 | Msa0030620:intron | 35.0% | |
| AATATCTATGATCGAACAGC+TGG | + | chr1_1:57005736-57005755 | Msa0030620:intron | 35.0% | |
| TAGATAGCCAGTAACGTAAA+GGG | - | chr1_1:57005891-57005910 | None:intergenic | 35.0% | |
| ATTGTTCTCTCTGGCATATT+TGG | - | chr1_1:57006208-57006227 | None:intergenic | 35.0% | |
| AGAGAACAATGTTCCTTACT+TGG | + | chr1_1:57006218-57006237 | Msa0030620:CDS | 35.0% | |
| GAGAACAATGTTCCTTACTT+GGG | + | chr1_1:57006219-57006238 | Msa0030620:CDS | 35.0% | |
| AGAACAATGTTCCTTACTTG+GGG | + | chr1_1:57006220-57006239 | Msa0030620:CDS | 35.0% | |
| !! | TACAACAGGATTTGGTGTTT+GGG | - | chr1_1:57006416-57006435 | None:intergenic | 35.0% |
| !! | TTACAACAGGATTTGGTGTT+TGG | - | chr1_1:57006417-57006436 | None:intergenic | 35.0% |
| TCTGGCATGAAAATTACAAC+AGG | - | chr1_1:57006430-57006449 | None:intergenic | 35.0% | |
| ! | TGTTGTAATTTTCATGCCAG+AGG | + | chr1_1:57006429-57006448 | Msa0030620:CDS | 35.0% |
| GATAATGATTAGGGAAACTG+GGG | - | chr1_1:57006478-57006497 | None:intergenic | 35.0% | |
| GGATAATGATTAGGGAAACT+GGG | - | chr1_1:57006479-57006498 | None:intergenic | 35.0% | |
| AGGATAATGATTAGGGAAAC+TGG | - | chr1_1:57006480-57006499 | None:intergenic | 35.0% | |
| TAGCTACATCACATACAGTT+TGG | - | chr1_1:57006610-57006629 | None:intergenic | 35.0% | |
| CTGAATGACACATGTCAATA+AGG | + | chr1_1:57006802-57006821 | Msa0030620:intron | 35.0% | |
| ATGTGTGCAGAAACCTTAAA+CGG | - | chr1_1:57006926-57006945 | None:intergenic | 35.0% | |
| TCTTCCTTACTGTAGATAAG+GGG | + | chr1_1:57007207-57007226 | Msa0030620:intron | 35.0% | |
| ! | TTTTCACCTTTTGCTAGGAA+GGG | - | chr1_1:57007306-57007325 | None:intergenic | 35.0% |
| ! | TTTTTCACCTTTTGCTAGGA+AGG | - | chr1_1:57007307-57007326 | None:intergenic | 35.0% |
| ! | GGTCTTATATTTAGAGACAG+AGG | - | chr1_1:57007392-57007411 | None:intergenic | 35.0% |
| ATCTCTTGATTTACTCGATG+TGG | - | chr1_1:57007413-57007432 | None:intergenic | 35.0% | |
| ! | GAATGGAGTCTTATAAGAAG+GGG | + | chr1_1:57007595-57007614 | Msa0030620:intron | 35.0% |
| ! | TTTGGAACTGAGGTAGTATA+TGG | + | chr1_1:57007627-57007646 | Msa0030620:intron | 35.0% |
| TTCATCTGTTCCTAATTACC+AGG | + | chr1_1:57007827-57007846 | Msa0030620:intron | 35.0% | |
| AATTGCCATACCTGGTAATT+AGG | - | chr1_1:57007840-57007859 | None:intergenic | 35.0% | |
| AATTACCAGGTATGGCAATT+CGG | + | chr1_1:57007840-57007859 | Msa0030620:intron | 35.0% | |
| TGACATTGTTCAGGTAAATC+CGG | + | chr1_1:57007974-57007993 | Msa0030620:intron | 35.0% | |
| ! | GTATATTTTCCTGCTTGGAT+AGG | + | chr1_1:57008068-57008087 | Msa0030620:intron | 35.0% |
| GCACAAGAGAGAATTTCTTA+AGG | - | chr1_1:57008243-57008262 | None:intergenic | 35.0% | |
| CCTACATAATATGGATGACT+TGG | - | chr1_1:57008280-57008299 | None:intergenic | 35.0% | |
| CCAAGTCATCCATATTATGT+AGG | + | chr1_1:57008277-57008296 | Msa0030620:CDS | 35.0% | |
| AATTGCACGCCTACATAATA+TGG | - | chr1_1:57008289-57008308 | None:intergenic | 35.0% | |
| TTCATCCCGAATTCAAATCT+CGG | + | chr1_1:57008308-57008327 | Msa0030620:CDS | 35.0% | |
| !!! | AGACCATCTGCTTTGTTTTT+AGG | + | chr1_1:57008337-57008356 | Msa0030620:CDS | 35.0% |
| GTACCTAAAAACAAAGCAGA+TGG | - | chr1_1:57008343-57008362 | None:intergenic | 35.0% | |
| TCTCACAGTATTAACACAGA+TGG | - | chr1_1:57008438-57008457 | None:intergenic | 35.0% | |
| CAATATGAGACCTACAGTAT+AGG | - | chr1_1:57008698-57008717 | None:intergenic | 35.0% | |
| CTATACTGTAGGTCTCATAT+TGG | + | chr1_1:57008696-57008715 | Msa0030620:intron | 35.0% | |
| ATCACTAGCATTCATGAGAA+TGG | + | chr1_1:57008745-57008764 | Msa0030620:CDS | 35.0% | |
| CTGATTCATATCAGTCACAA+AGG | + | chr1_1:57008956-57008975 | Msa0030620:intron | 35.0% | |
| ! | ACTTCTGGTGATGAAATACA+TGG | - | chr1_1:57009001-57009020 | None:intergenic | 35.0% |
| TGCTAAAAGGTTGCAAATAC+TGG | + | chr1_1:57009067-57009086 | Msa0030620:intron | 35.0% | |
| GTTGTAACTTTGTCAAGCTA+AGG | + | chr1_1:57009116-57009135 | Msa0030620:intron | 35.0% | |
| ! | AGTGCTGAATTTATCAGCTA+AGG | - | chr1_1:57009155-57009174 | None:intergenic | 35.0% |
| CTGATAAATTCAGCACTTCT+TGG | + | chr1_1:57009158-57009177 | Msa0030620:intron | 35.0% | |
| CCATACTATTTAGCTAACTG+TGG | - | chr1_1:57009184-57009203 | None:intergenic | 35.0% | |
| CCACAGTTAGCTAAATAGTA+TGG | + | chr1_1:57009181-57009200 | Msa0030620:intron | 35.0% | |
| ATACAACTAAGGAAAAGGTC+TGG | - | chr1_1:57009207-57009226 | None:intergenic | 35.0% | |
| !!! | TCTTTTTCGATCTTCATTGC+AGG | + | chr1_1:57009285-57009304 | Msa0030620:intron | 35.0% |
| !!! | AAGGTTGATATTTTGGTGGG+AGG | - | chr1_1:57000204-57000223 | None:intergenic | 40.0% |
| !!! | GGGAAGGTTGATATTTTGGT+GGG | - | chr1_1:57000207-57000226 | None:intergenic | 40.0% |
| AAAATATCAACCTTCCCGCT+CGG | + | chr1_1:57000210-57000229 | Msa0030620:five_prime_UTR | 40.0% | |
| GTTTGTGTTTATATCCGAGC+GGG | - | chr1_1:57000227-57000246 | None:intergenic | 40.0% | |
| ATGAAGTACGTTCTCATCTC+CGG | + | chr1_1:57000289-57000308 | Msa0030620:CDS | 40.0% | |
| !! | AGAGTGAGAACCGATTTTGA+TGG | - | chr1_1:57000398-57000417 | None:intergenic | 40.0% |
| AAACGGTGAATGATGCGAAA+CGG | - | chr1_1:57000449-57000468 | None:intergenic | 40.0% | |
| CCAGCGTCAATGTTCAAATA+CGG | - | chr1_1:57000497-57000516 | None:intergenic | 40.0% | |
| ! | ACCATGTCTCCTTTTGAACA+TGG | + | chr1_1:57000518-57000537 | Msa0030620:CDS | 40.0% |
| TCCATGTTCAAAAGGAGACA+TGG | - | chr1_1:57000522-57000541 | None:intergenic | 40.0% | |
| TTCTTAGTCTGTGCTTGAGA+AGG | + | chr1_1:57000870-57000889 | Msa0030620:intron | 40.0% | |
| CAATCACACAAACATCAGCA+GGG | - | chr1_1:57001128-57001147 | None:intergenic | 40.0% | |
| TCAATCACACAAACATCAGC+AGG | - | chr1_1:57001129-57001148 | None:intergenic | 40.0% | |
| GATGTTTGTGTGATTGAGCT+TGG | + | chr1_1:57001132-57001151 | Msa0030620:CDS | 40.0% | |
| ! | TGAGTCTATGCCGTTTATTG+AGG | + | chr1_1:57001277-57001296 | Msa0030620:CDS | 40.0% |
| ACGGCAATTATCCTTTCAAG+TGG | + | chr1_1:57001304-57001323 | Msa0030620:CDS | 40.0% | |
| ! | CGGCAATTATCCTTTCAAGT+GGG | + | chr1_1:57001305-57001324 | Msa0030620:CDS | 40.0% |
| CATTGTTCTCATGTGTGATG+AGG | + | chr1_1:57001430-57001449 | Msa0030620:intron | 40.0% | |
| CTCGCACTTACCTAAGTATT+TGG | - | chr1_1:57001613-57001632 | None:intergenic | 40.0% | |
| CTAAAGGAGAGAAAAGGTTG+CGG | + | chr1_1:57002058-57002077 | Msa0030620:intron | 40.0% | |
| TAAAGGAGAGAAAAGGTTGC+GGG | + | chr1_1:57002059-57002078 | Msa0030620:intron | 40.0% | |
| GGACATTCACTTGGTCATAT+TGG | + | chr1_1:57002080-57002099 | Msa0030620:intron | 40.0% | |
| ! | TAGAAGGCTGGTGATGAAAT+TGG | + | chr1_1:57002176-57002195 | Msa0030620:intron | 40.0% |
| CGAGACAAGATGACATTTCA+TGG | - | chr1_1:57002500-57002519 | None:intergenic | 40.0% | |
| ATGGTTGCTCCAAAGTCTTT+AGG | + | chr1_1:57002841-57002860 | Msa0030620:intron | 40.0% | |
| CACTGCAGTGAACTTTAGTA+AGG | + | chr1_1:57003269-57003288 | Msa0030620:intron | 40.0% | |
| TAGTAAGGGTAATGCTAGGA+TGG | + | chr1_1:57003284-57003303 | Msa0030620:intron | 40.0% | |
| AGTAAGGGTAATGCTAGGAT+GGG | + | chr1_1:57003285-57003304 | Msa0030620:intron | 40.0% | |
| GAAACCAAATTTCCTCGGTA+AGG | - | chr1_1:57003350-57003369 | None:intergenic | 40.0% | |
| ! | ACCGAGGAAATTTGGTTTCT+TGG | + | chr1_1:57003351-57003370 | Msa0030620:intron | 40.0% |
| TGTGGTTGTTAAGACCAAAG+GGG | + | chr1_1:57003391-57003410 | Msa0030620:intron | 40.0% | |
| AGACTCACTCTAAGTAACAG+GGG | - | chr1_1:57003927-57003946 | None:intergenic | 40.0% | |
| GAGACTCACTCTAAGTAACA+GGG | - | chr1_1:57003928-57003947 | None:intergenic | 40.0% | |
| AGAGACTCACTCTAAGTAAC+AGG | - | chr1_1:57003929-57003948 | None:intergenic | 40.0% | |
| AATAGAAGCCGGACATTAAG+AGG | - | chr1_1:57004007-57004026 | None:intergenic | 40.0% | |
| CTGCTGTAAAATTGAGTGGT+GGG | - | chr1_1:57004045-57004064 | None:intergenic | 40.0% | |
| TCAACGCACTCTTCATTGTT+GGG | - | chr1_1:57004258-57004277 | None:intergenic | 40.0% | |
| ATCAACGCACTCTTCATTGT+TGG | - | chr1_1:57004259-57004278 | None:intergenic | 40.0% | |
| !!! | GCACAAGTCTTTTGGTTTTG+GGG | + | chr1_1:57004402-57004421 | Msa0030620:intron | 40.0% |
| CGTCATATGTTGGTCATACT+TGG | + | chr1_1:57004580-57004599 | Msa0030620:intron | 40.0% | |
| TATGTTGGTCATACTTGGGA+AGG | + | chr1_1:57004585-57004604 | Msa0030620:intron | 40.0% | |
| TTTACAGGTTAGGATTGCCA+TGG | + | chr1_1:57004860-57004879 | Msa0030620:intron | 40.0% | |
| ! | ACCAACATATTTTCCCACCA+TGG | - | chr1_1:57004880-57004899 | None:intergenic | 40.0% |
| CATTGAGACCATCAATTGAC+TGG | + | chr1_1:57005379-57005398 | Msa0030620:CDS | 40.0% | |
| ATTGTGCACTGTCATCTTCA+AGG | - | chr1_1:57005419-57005438 | None:intergenic | 40.0% | |
| ! | TCTATCTAGGAAGTTTGGTG+AGG | + | chr1_1:57005626-57005645 | Msa0030620:intron | 40.0% |
| AAAAACCGTCTAGCACATAG+CGG | - | chr1_1:57005676-57005695 | None:intergenic | 40.0% | |
| CTAGATAGCCAGTAACGTAA+AGG | - | chr1_1:57005892-57005911 | None:intergenic | 40.0% | |
| ! | CTTATTGGCCTAATAATGGG+TGG | + | chr1_1:57005920-57005939 | Msa0030620:intron | 40.0% |
| CCATAAGACCACCCATTATT+AGG | - | chr1_1:57005931-57005950 | None:intergenic | 40.0% | |
| !! | CCTAATAATGGGTGGTCTTA+TGG | + | chr1_1:57005928-57005947 | Msa0030620:intron | 40.0% |
| CCAATATTGTGAGATTGAGC+AGG | - | chr1_1:57006001-57006020 | None:intergenic | 40.0% | |
| CCTGCTCAATCTCACAATAT+TGG | + | chr1_1:57005998-57006017 | Msa0030620:intron | 40.0% | |
| GTAAGGAACATTGTTCTCTC+TGG | - | chr1_1:57006217-57006236 | None:intergenic | 40.0% | |
| !!! | TCTATTCTTAGGTTTTGGGC+TGG | + | chr1_1:57006362-57006381 | Msa0030620:intron | 40.0% |
| !!! | CTATTCTTAGGTTTTGGGCT+GGG | + | chr1_1:57006363-57006382 | Msa0030620:intron | 40.0% |
| ATGCCTGCTAGTCATAAACA+GGG | + | chr1_1:57006507-57006526 | Msa0030620:intron | 40.0% | |
| CTAGTCATAAACAGGGTTCT+AGG | + | chr1_1:57006514-57006533 | Msa0030620:intron | 40.0% | |
| CACATGTCAATAAGGATGTC+TGG | + | chr1_1:57006810-57006829 | Msa0030620:intron | 40.0% | |
| !!! | AAACGGCACTCGTTTTGAAA+CGG | - | chr1_1:57006909-57006928 | None:intergenic | 40.0% |
| !! | TTCAAAACGAGTGCCGTTTA+AGG | + | chr1_1:57006910-57006929 | Msa0030620:intron | 40.0% |
| GAAACCCCTTATCTACAGTA+AGG | - | chr1_1:57007214-57007233 | None:intergenic | 40.0% | |
| ACTGTAGATAAGGGGTTTCA+AGG | + | chr1_1:57007215-57007234 | Msa0030620:intron | 40.0% | |
| CTGTAGATAAGGGGTTTCAA+GGG | + | chr1_1:57007216-57007235 | Msa0030620:intron | 40.0% | |
| TGTTGAGAAGTTTACCCTTC+AGG | + | chr1_1:57007461-57007480 | Msa0030620:intron | 40.0% | |
| CTGTTCCTAATTACCAGGTA+TGG | + | chr1_1:57007832-57007851 | Msa0030620:intron | 40.0% | |
| ATTCGGAGTATGTGGATGAA+CGG | + | chr1_1:57007857-57007876 | Msa0030620:CDS | 40.0% | |
| CAGGTACTACACATGTTTGT+AGG | - | chr1_1:57007938-57007957 | None:intergenic | 40.0% | |
| GAAGCTGGGCTAAAATTTGT+TGG | + | chr1_1:57008017-57008036 | Msa0030620:CDS | 40.0% | |
| !! | TGGGCTAAAATTTGTTGGCA+GGG | + | chr1_1:57008022-57008041 | Msa0030620:CDS | 40.0% |
| !! | TGGAGGTATATTTTCCTGCT+TGG | + | chr1_1:57008063-57008082 | Msa0030620:intron | 40.0% |
| TATCAAAACCCTATCCAAGC+AGG | - | chr1_1:57008080-57008099 | None:intergenic | 40.0% | |
| ! | CAGGTTTTCAACTACAGTTC+TGG | - | chr1_1:57008107-57008126 | None:intergenic | 40.0% |
| CAGAACTGTAGTTGAAAACC+TGG | + | chr1_1:57008105-57008124 | Msa0030620:intron | 40.0% | |
| AACTGTAGTTGAAAACCTGG+CGG | + | chr1_1:57008108-57008127 | Msa0030620:intron | 40.0% | |
| TGAGATGAAGATGGTCTGTT+TGG | + | chr1_1:57008453-57008472 | Msa0030620:intron | 40.0% | |
| GCAAGCAATAACATGACATC+AGG | - | chr1_1:57008511-57008530 | None:intergenic | 40.0% | |
| ATTCACATGGGAATTTCGGT+AGG | - | chr1_1:57008547-57008566 | None:intergenic | 40.0% | |
| AGGGAAAATAATTGGGAGCA+AGG | + | chr1_1:57008839-57008858 | Msa0030620:intron | 40.0% | |
| GGGAAAATAATTGGGAGCAA+GGG | + | chr1_1:57008840-57008859 | Msa0030620:intron | 40.0% | |
| AATAATTGGGAGCAAGGGAA+TGG | + | chr1_1:57008845-57008864 | Msa0030620:intron | 40.0% | |
| ATAATTGGGAGCAAGGGAAT+GGG | + | chr1_1:57008846-57008865 | Msa0030620:intron | 40.0% | |
| TAGGAACTAGGAACTGAAGT+AGG | + | chr1_1:57008872-57008891 | Msa0030620:intron | 40.0% | |
| GTAACTTTGTCAAGCTAAGG+AGG | + | chr1_1:57009119-57009138 | Msa0030620:intron | 40.0% | |
| CACAGCAAGCTATACAACTA+AGG | - | chr1_1:57009218-57009237 | None:intergenic | 40.0% | |
| !! | CTTAGTTGTATAGCTTGCTG+TGG | + | chr1_1:57009216-57009235 | Msa0030620:intron | 40.0% |
| ATGTGTATAGAGGTCTGAAG+CGG | + | chr1_1:57009335-57009354 | Msa0030620:three_prime_UTR | 40.0% | |
| TTTATAAGCCTGTGAGTGTC+AGG | - | chr1_1:57009425-57009444 | None:intergenic | 40.0% | |
| !!! | CGGGAAGGTTGATATTTTGG+TGG | - | chr1_1:57000208-57000227 | None:intergenic | 45.0% |
| !!! | GAGCGGGAAGGTTGATATTT+TGG | - | chr1_1:57000211-57000230 | None:intergenic | 45.0% |
| !! | GTGAGAACCGATTTTGATGG+AGG | - | chr1_1:57000395-57000414 | None:intergenic | 45.0% |
| CGGTTACGAAGAAGTTGAGT+TGG | - | chr1_1:57000429-57000448 | None:intergenic | 45.0% | |
| CCGTATTTGAACATTGACGC+TGG | + | chr1_1:57000494-57000513 | Msa0030620:CDS | 45.0% | |
| ! | CTGATTGCATCGGTGATATG+CGG | - | chr1_1:57001057-57001076 | None:intergenic | 45.0% |
| TCACCGATGCAATCAGAAAC+TGG | + | chr1_1:57001061-57001080 | Msa0030620:CDS | 45.0% | |
| GGTCTTCATTTCCATCAACC+GGG | - | chr1_1:57001107-57001126 | None:intergenic | 45.0% | |
| GGGTCTTCATTTCCATCAAC+CGG | - | chr1_1:57001108-57001127 | None:intergenic | 45.0% | |
| GTTTGTGTGATTGAGCTTGG+AGG | + | chr1_1:57001135-57001154 | Msa0030620:CDS | 45.0% | |
| ! | TGCCGTTTATTGAGGCTCTA+CGG | + | chr1_1:57001285-57001304 | Msa0030620:CDS | 45.0% |
| TGCCGTAGAGCCTCAATAAA+CGG | - | chr1_1:57001290-57001309 | None:intergenic | 45.0% | |
| TGCTGTCATACCCACTTGAA+AGG | - | chr1_1:57001318-57001337 | None:intergenic | 45.0% | |
| CTTTCCTCGACAACAGTCAA+AGG | - | chr1_1:57002026-57002045 | None:intergenic | 45.0% | |
| TGGATGAGACAGAAGTTGTC+AGG | - | chr1_1:57002561-57002580 | None:intergenic | 45.0% | |
| ACACTGGTATCAGGCTAACA+TGG | - | chr1_1:57002581-57002600 | None:intergenic | 45.0% | |
| ! | TGTTAGCCTGATACCAGTGT+TGG | + | chr1_1:57002581-57002600 | Msa0030620:CDS | 45.0% |
| ! | GTTAGCCTGATACCAGTGTT+GGG | + | chr1_1:57002582-57002601 | Msa0030620:CDS | 45.0% |
| ! | ATACCAGTGTTGGGTGTAGT+GGG | + | chr1_1:57002591-57002610 | Msa0030620:CDS | 45.0% |
| !!! | GTTGTGTCGGCTTTGTTTTC+TGG | - | chr1_1:57002702-57002721 | None:intergenic | 45.0% |
| ! | TGTCAGGGAACTAAGAGCAT+TGG | + | chr1_1:57002726-57002745 | Msa0030620:CDS | 45.0% |
| !! | GTCAGGGAACTAAGAGCATT+GGG | + | chr1_1:57002727-57002746 | Msa0030620:CDS | 45.0% |
| !! | GAGCGACTTGCTAAAAGATG+AGG | - | chr1_1:57002760-57002779 | None:intergenic | 45.0% |
| AAATGCATCTAGGCACCAAC+TGG | - | chr1_1:57002803-57002822 | None:intergenic | 45.0% | |
| GAGCCTGAATTTCGTAACTG+TGG | - | chr1_1:57002963-57002982 | None:intergenic | 45.0% | |
| GCTGCTGTAAAATTGAGTGG+TGG | - | chr1_1:57004046-57004065 | None:intergenic | 45.0% | |
| !! | TTTGCGGCAATGGACTGATA+TGG | + | chr1_1:57004726-57004745 | Msa0030620:CDS | 45.0% |
| ! | GCCATGGTGGGAAAATATGT+TGG | + | chr1_1:57004876-57004895 | Msa0030620:CDS | 45.0% |
| TGCAACACAAGCATGCAGTA+GGG | - | chr1_1:57005355-57005374 | None:intergenic | 45.0% | |
| GCTGCAATCCAGTCAATTGA+TGG | - | chr1_1:57005390-57005409 | None:intergenic | 45.0% | |
| TTCTCATTATGCAGGCAGTC+AGG | + | chr1_1:57005483-57005502 | Msa0030620:intron | 45.0% | |
| AAAACCGTCTAGCACATAGC+GGG | - | chr1_1:57005675-57005694 | None:intergenic | 45.0% | |
| ! | GCTATGTGCTAGACGGTTTT+TGG | + | chr1_1:57005675-57005694 | Msa0030620:intron | 45.0% |
| ACACACACCCTTTACGTTAC+TGG | + | chr1_1:57005881-57005900 | Msa0030620:intron | 45.0% | |
| TCATGTGGAGAGATCCACAT+TGG | - | chr1_1:57006041-57006060 | None:intergenic | 45.0% | |
| ! | TCCTTACTTGGGGATTTGCT+TGG | + | chr1_1:57006230-57006249 | Msa0030620:CDS | 45.0% |
| ! | CCTTACTTGGGGATTTGCTT+GGG | + | chr1_1:57006231-57006250 | Msa0030620:CDS | 45.0% |
| GAAACAAGTATGCGTACCTC+TGG | - | chr1_1:57006448-57006467 | None:intergenic | 45.0% | |
| AATGATTAGGGAAACTGGGG+AGG | - | chr1_1:57006475-57006494 | None:intergenic | 45.0% | |
| GATGCCTGCTAGTCATAAAC+AGG | + | chr1_1:57006506-57006525 | Msa0030620:intron | 45.0% | |
| GAACCCTGTTTATGACTAGC+AGG | - | chr1_1:57006513-57006532 | None:intergenic | 45.0% | |
| !! | ATGGGAAGTACCATGAGACT+TGG | + | chr1_1:57006543-57006562 | Msa0030620:CDS | 45.0% |
| TCTTCGAGATCCAAGTCTCA+TGG | - | chr1_1:57006556-57006575 | None:intergenic | 45.0% | |
| GTCATTCAGAACAACCAGAC+AGG | - | chr1_1:57006791-57006810 | None:intergenic | 45.0% | |
| AGATAAGGGGTTTCAAGGGA+AGG | + | chr1_1:57007220-57007239 | Msa0030620:intron | 45.0% | |
| GATAAGGGGTTTCAAGGGAA+GGG | + | chr1_1:57007221-57007240 | Msa0030620:intron | 45.0% | |
| GGTTTCAAGGGAAGGGAAAT+GGG | + | chr1_1:57007228-57007247 | Msa0030620:intron | 45.0% | |
| GAAGGGAAATGGGAAAGGTT+TGG | + | chr1_1:57007238-57007257 | Msa0030620:intron | 45.0% | |
| ! | ACCTTTTGCTAGGAAGGGAA+GGG | - | chr1_1:57007301-57007320 | None:intergenic | 45.0% |
| ATACTCCGAATTGCCATACC+TGG | - | chr1_1:57007848-57007867 | None:intergenic | 45.0% | |
| GTATGGCAATTCGGAGTATG+TGG | + | chr1_1:57007849-57007868 | Msa0030620:CDS | 45.0% | |
| !! | CTGGGCTAAAATTTGTTGGC+AGG | + | chr1_1:57008021-57008040 | Msa0030620:CDS | 45.0% |
| TTTGTTGGCAGGGATGAAAG+CGG | + | chr1_1:57008032-57008051 | Msa0030620:CDS | 45.0% | |
| CATGTCTAATTGAAACCGCC+AGG | - | chr1_1:57008126-57008145 | None:intergenic | 45.0% | |
| CTGGCGGTTTCAATTAGACA+TGG | + | chr1_1:57008124-57008143 | Msa0030620:intron | 45.0% | |
| !! | CAACAACAAGAGTGCTGTGA+AGG | - | chr1_1:57008480-57008499 | None:intergenic | 45.0% |
| TGATGCTGCACCTATACTGT+AGG | + | chr1_1:57008685-57008704 | Msa0030620:intron | 45.0% | |
| AGGTCTCATATTGGCAGCAA+CGG | + | chr1_1:57008705-57008724 | Msa0030620:intron | 45.0% | |
| GAACTAGGAACTGAAGTAGG+AGG | + | chr1_1:57008875-57008894 | Msa0030620:intron | 45.0% | |
| AGGAACTGAAGTAGGAGGAA+TGG | + | chr1_1:57008880-57008899 | Msa0030620:intron | 45.0% | |
| GGAACTGAAGTAGGAGGAAT+GGG | + | chr1_1:57008881-57008900 | Msa0030620:intron | 45.0% | |
| ! | ATCCAACCTAGAGAAGCATG+GGG | - | chr1_1:57008936-57008955 | None:intergenic | 45.0% |
| ! | GATCCAACCTAGAGAAGCAT+GGG | - | chr1_1:57008937-57008956 | None:intergenic | 45.0% |
| AGATCCAACCTAGAGAAGCA+TGG | - | chr1_1:57008938-57008957 | None:intergenic | 45.0% | |
| ACCATTAACCTGACACTCAC+AGG | + | chr1_1:57009414-57009433 | Msa0030620:three_prime_UTR | 45.0% | |
| !!! | AAAATAATTTCTAAAAAAAT+AGG | - | chr1_1:57001851-57001870 | None:intergenic | 5.0% |
| !!! | TATATTTTTCAATAAAAATA+TGG | - | chr1_1:57004640-57004659 | None:intergenic | 5.0% |
| !! | TTGAAAAATATATTAATAAT+TGG | + | chr1_1:57004648-57004667 | Msa0030620:intron | 5.0% |
| !!! | TTTCTAAAAAAATTAAAAAA+AGG | + | chr1_1:57005256-57005275 | Msa0030620:intron | 5.0% |
| !!! | TTCTAAAAAAATTAAAAAAA+GGG | + | chr1_1:57005257-57005276 | Msa0030620:intron | 5.0% |
| GTGTTTATATCCGAGCGGGA+AGG | - | chr1_1:57000223-57000242 | None:intergenic | 50.0% | |
| AAGTACGTTCTCATCTCCGG+CGG | + | chr1_1:57000292-57000311 | Msa0030620:CDS | 50.0% | |
| !! | CGATTTTGATGGAGGTGACG+CGG | - | chr1_1:57000387-57000406 | None:intergenic | 50.0% |
| CGCGTCACCTCCATCAAAAT+CGG | + | chr1_1:57000385-57000404 | Msa0030620:CDS | 50.0% | |
| !! | TGTTCTTGATGATGGCGGAG+AGG | + | chr1_1:57000550-57000569 | Msa0030620:CDS | 50.0% |
| GAGCGCAAGGGAGATTATCT+CGG | + | chr1_1:57000892-57000911 | Msa0030620:CDS | 50.0% | |
| !! | ATTGAGCTTGGAGGCACTGT+GGG | + | chr1_1:57001144-57001163 | Msa0030620:CDS | 50.0% |
| CCTCGACAACAGTCAAAGGA+TGG | - | chr1_1:57002022-57002041 | None:intergenic | 50.0% | |
| CCATCCTTTGACTGTTGTCG+AGG | + | chr1_1:57002019-57002038 | Msa0030620:intron | 50.0% | |
| AAGGTTGCGGGACATTCACT+TGG | + | chr1_1:57002071-57002090 | Msa0030620:intron | 50.0% | |
| CTACACCCAACACTGGTATC+AGG | - | chr1_1:57002590-57002609 | None:intergenic | 50.0% | |
| ! | GATACCAGTGTTGGGTGTAG+TGG | + | chr1_1:57002590-57002609 | Msa0030620:CDS | 50.0% |
| ! | TACCAGTGTTGGGTGTAGTG+GGG | + | chr1_1:57002592-57002611 | Msa0030620:CDS | 50.0% |
| TCCCTGACACTGTGTTGTGT+CGG | - | chr1_1:57002715-57002734 | None:intergenic | 50.0% | |
| TTTAGCAAGTCGCTCTGCTG+AGG | + | chr1_1:57002765-57002784 | Msa0030620:CDS | 50.0% | |
| TGTGATATTGGGCCTTACCG+AGG | + | chr1_1:57003335-57003354 | Msa0030620:intron | 50.0% | |
| TGGGCCTTACCGAGGAAATT+TGG | + | chr1_1:57003343-57003362 | Msa0030620:intron | 50.0% | |
| ATTCAATGTGCAGCCTCTGC+TGG | + | chr1_1:57003721-57003740 | Msa0030620:intron | 50.0% | |
| TCCTTGGTACTTTCCAGCAG+AGG | - | chr1_1:57003737-57003756 | None:intergenic | 50.0% | |
| AAGTTGACAACGGGATGCAG+GGG | - | chr1_1:57004335-57004354 | None:intergenic | 50.0% | |
| ! | CAAGTTGACAACGGGATGCA+GGG | - | chr1_1:57004336-57004355 | None:intergenic | 50.0% |
| !! | TCAAGTTGACAACGGGATGC+AGG | - | chr1_1:57004337-57004356 | None:intergenic | 50.0% |
| CATACTTGGGAAGGTTCTGC+TGG | + | chr1_1:57004594-57004613 | Msa0030620:intron | 50.0% | |
| ! | GCAAATCAGGAGGTGTAGCA+CGG | - | chr1_1:57004711-57004730 | None:intergenic | 50.0% |
| ! | GTGCTACACCTCCTGATTTG+CGG | + | chr1_1:57004710-57004729 | Msa0030620:CDS | 50.0% |
| TCAGTCCATTGCCGCAAATC+AGG | - | chr1_1:57004724-57004743 | None:intergenic | 50.0% | |
| ACAGGTTAGGATTGCCATGG+TGG | + | chr1_1:57004863-57004882 | Msa0030620:intron | 50.0% | |
| CAGGTTAGGATTGCCATGGT+GGG | + | chr1_1:57004864-57004883 | Msa0030620:intron | 50.0% | |
| GTGCAACACAAGCATGCAGT+AGG | - | chr1_1:57005356-57005375 | None:intergenic | 50.0% | |
| CTTCAGAGTCTTCCATGCTG+CGG | - | chr1_1:57005561-57005580 | None:intergenic | 50.0% | |
| TGATCCCGCTATGTGCTAGA+CGG | + | chr1_1:57005668-57005687 | Msa0030620:intron | 50.0% | |
| GTCTTGGTTCCAGGAGGATT+TGG | + | chr1_1:57006150-57006169 | Msa0030620:CDS | 50.0% | |
| TTTGGAGATCGTGGTGTGAG+AGG | + | chr1_1:57006168-57006187 | Msa0030620:CDS | 50.0% | |
| CCCAAGCAAATCCCCAAGTA+AGG | - | chr1_1:57006234-57006253 | None:intergenic | 50.0% | |
| ATTAGGGAAACTGGGGAGGA+GGG | - | chr1_1:57006471-57006490 | None:intergenic | 50.0% | |
| GACTAGCAGGCATCACAACA+AGG | - | chr1_1:57006500-57006519 | None:intergenic | 50.0% | |
| !! | ACAGGGTTCTAGGACTCACA+TGG | + | chr1_1:57006524-57006543 | Msa0030620:intron | 50.0% |
| !! | CAGGGTTCTAGGACTCACAT+GGG | + | chr1_1:57006525-57006544 | Msa0030620:intron | 50.0% |
| ! | TTTCTTGTTCTGGGCCTGTC+TGG | + | chr1_1:57006774-57006793 | Msa0030620:intron | 50.0% |
| ATGTCTGGTCGTTGACCATC+AGG | + | chr1_1:57006825-57006844 | Msa0030620:intron | 50.0% | |
| TGTCTGGTCGTTGACCATCA+GGG | + | chr1_1:57006826-57006845 | Msa0030620:intron | 50.0% | |
| !!! | GGCACTCGTTTTGAAACGGA+GGG | - | chr1_1:57006905-57006924 | None:intergenic | 50.0% |
| GGGTTTCAAGGGAAGGGAAA+TGG | + | chr1_1:57007227-57007246 | Msa0030620:intron | 50.0% | |
| CAAGGGAAGGGAAATGGGAA+AGG | + | chr1_1:57007233-57007252 | Msa0030620:intron | 50.0% | |
| GGGATGTAGGTTTGGACAGT+CGG | - | chr1_1:57007277-57007296 | None:intergenic | 50.0% | |
| ! | TTTTGCTAGGAAGGGAAGGG+GGG | - | chr1_1:57007298-57007317 | None:intergenic | 50.0% |
| ! | CTTTTGCTAGGAAGGGAAGG+GGG | - | chr1_1:57007299-57007318 | None:intergenic | 50.0% |
| ! | CCTTTTGCTAGGAAGGGAAG+GGG | - | chr1_1:57007300-57007319 | None:intergenic | 50.0% |
| ! | CACCTTTTGCTAGGAAGGGA+AGG | - | chr1_1:57007302-57007321 | None:intergenic | 50.0% |
| ACGGCATCGTCATAGATACG+AGG | + | chr1_1:57007876-57007895 | Msa0030620:CDS | 50.0% | |
| GGATGAAAGCGGAAGACGAA+TGG | + | chr1_1:57008043-57008062 | Msa0030620:CDS | 50.0% | |
| TGAAAGCGGAAGACGAATGG+AGG | + | chr1_1:57008046-57008065 | Msa0030620:CDS | 50.0% | |
| CCAGGCCGAGATTTGAATTC+GGG | - | chr1_1:57008316-57008335 | None:intergenic | 50.0% | |
| CCCAGGCCGAGATTTGAATT+CGG | - | chr1_1:57008317-57008336 | None:intergenic | 50.0% | |
| CCGAATTCAAATCTCGGCCT+GGG | + | chr1_1:57008314-57008333 | Msa0030620:CDS | 50.0% | |
| AACAAAGCAGATGGTCTCCC+AGG | - | chr1_1:57008334-57008353 | None:intergenic | 50.0% | |
| CAGATGGTGTAAACGGCTCT+TGG | - | chr1_1:57008422-57008441 | None:intergenic | 50.0% | |
| GGTCTCATATTGGCAGCAAC+GGG | + | chr1_1:57008706-57008725 | Msa0030620:intron | 50.0% | |
| GTCTCATATTGGCAGCAACG+GGG | + | chr1_1:57008707-57008726 | Msa0030620:CDS | 50.0% | |
| GAGGAATGGGAATCCTGAAG+TGG | + | chr1_1:57008894-57008913 | Msa0030620:intron | 50.0% | |
| TACCCCATGCTTCTCTAGGT+TGG | + | chr1_1:57008931-57008950 | Msa0030620:intron | 50.0% | |
| GCCTGTGAGTGTCAGGTTAA+TGG | - | chr1_1:57009418-57009437 | None:intergenic | 50.0% | |
| ! | AAAAGGAGCACGCACGTTTG+GGG | - | chr1_1:57009494-57009513 | None:intergenic | 50.0% |
| ! | GAAAAGGAGCACGCACGTTT+GGG | - | chr1_1:57009495-57009514 | None:intergenic | 50.0% |
| ! | AGAAAAGGAGCACGCACGTT+TGG | - | chr1_1:57009496-57009515 | None:intergenic | 50.0% |
| ! | TTTTGATGGAGGTGACGCGG+AGG | - | chr1_1:57000384-57000403 | None:intergenic | 55.0% |
| ! | TGTGCTTGAGAAGGAGCGCA+AGG | + | chr1_1:57000879-57000898 | Msa0030620:CDS | 55.0% |
| ! | GTGCTTGAGAAGGAGCGCAA+GGG | + | chr1_1:57000880-57000899 | Msa0030620:CDS | 55.0% |
| TGAGTCGGTTGCTGTGATCC+CGG | + | chr1_1:57001086-57001105 | Msa0030620:CDS | 55.0% | |
| GTTGCTGTGATCCCGGTTGA+TGG | + | chr1_1:57001093-57001112 | Msa0030620:CDS | 55.0% | |
| !! | GATTGAGCTTGGAGGCACTG+TGG | + | chr1_1:57001143-57001162 | Msa0030620:CDS | 55.0% |
| GAAGTTGTCAGGCCCTGAGA+AGG | - | chr1_1:57002550-57002569 | None:intergenic | 55.0% | |
| ! | ACCAGTGTTGGGTGTAGTGG+GGG | + | chr1_1:57002593-57002612 | Msa0030620:CDS | 55.0% |
| AGCCGACACAACACAGTGTC+AGG | + | chr1_1:57002710-57002729 | Msa0030620:CDS | 55.0% | |
| GCCGACACAACACAGTGTCA+GGG | + | chr1_1:57002711-57002730 | Msa0030620:CDS | 55.0% | |
| GCACTCAGCTTCAACCCCTT+TGG | - | chr1_1:57003408-57003427 | None:intergenic | 55.0% | |
| !! | GCCTCTGCTGGAAAGTACCA+AGG | + | chr1_1:57003733-57003752 | Msa0030620:intron | 55.0% |
| GAGGTGTAGCACGGCTGAAA+AGG | - | chr1_1:57004702-57004721 | None:intergenic | 55.0% | |
| ! | CACCTCCTGATTTGCGGCAA+TGG | + | chr1_1:57004716-57004735 | Msa0030620:CDS | 55.0% |
| GTCCATTGCCGCAAATCAGG+AGG | - | chr1_1:57004721-57004740 | None:intergenic | 55.0% | |
| CGCAGCATGGAAGACTCTGA+AGG | + | chr1_1:57005559-57005578 | Msa0030620:CDS | 55.0% | |
| GCAGAGTGCAGCTTGTGTCT+TGG | + | chr1_1:57006134-57006153 | Msa0030620:intron | 55.0% | |
| GCAGCTTGTGTCTTGGTTCC+AGG | + | chr1_1:57006141-57006160 | Msa0030620:CDS | 55.0% | |
| GCTTGTGTCTTGGTTCCAGG+AGG | + | chr1_1:57006144-57006163 | Msa0030620:CDS | 55.0% | |
| CCACGATCTCCAAATCCTCC+TGG | - | chr1_1:57006162-57006181 | None:intergenic | 55.0% | |
| CCAGGAGGATTTGGAGATCG+TGG | + | chr1_1:57006159-57006178 | Msa0030620:CDS | 55.0% | |
| TTAGGGAAACTGGGGAGGAG+GGG | - | chr1_1:57006470-57006489 | None:intergenic | 55.0% | |
| GATTAGGGAAACTGGGGAGG+AGG | - | chr1_1:57006472-57006491 | None:intergenic | 55.0% | |
| !!! | CGGCACTCGTTTTGAAACGG+AGG | - | chr1_1:57006906-57006925 | None:intergenic | 55.0% |
| TTTGCTAGGAAGGGAAGGGG+GGG | - | chr1_1:57007297-57007316 | None:intergenic | 55.0% | |
| CCCCTTCCCTTCCTAGCAAA+AGG | + | chr1_1:57007297-57007316 | Msa0030620:intron | 55.0% | |
| ATGGAGGACACATCACACGC+TGG | - | chr1_1:57007693-57007712 | None:intergenic | 55.0% | |
| CCCGAATTCAAATCTCGGCC+TGG | + | chr1_1:57008313-57008332 | Msa0030620:CDS | 55.0% | |
| ATTGGCAGCAACGGGGAAGT+TGG | + | chr1_1:57008714-57008733 | Msa0030620:CDS | 55.0% | |
| ATTGGGAGCAAGGGAATGGG+AGG | + | chr1_1:57008849-57008868 | Msa0030620:intron | 55.0% | |
| GGGAATGGGAGGTAGGAACT+AGG | + | chr1_1:57008860-57008879 | Msa0030620:intron | 55.0% | |
| CTGCACGCATACTCCACTTC+AGG | - | chr1_1:57008910-57008929 | None:intergenic | 55.0% | |
| CAGCTACCCCATGCTTCTCT+AGG | + | chr1_1:57008927-57008946 | Msa0030620:intron | 55.0% | |
| GGGGCATGGTGAACTGAACA+AGG | - | chr1_1:57009475-57009494 | None:intergenic | 55.0% | |
| ATCTCCGGCGGAGTCGTTAG+CGG | + | chr1_1:57000304-57000323 | Msa0030620:CDS | 60.0% | |
| TCCCCCACTACACCCAACAC+TGG | - | chr1_1:57002597-57002616 | None:intergenic | 60.0% | |
| AACGGGATGCAGGGGACAGT+TGG | - | chr1_1:57004327-57004346 | None:intergenic | 60.0% | |
| CATGCTGCGGCATGTGCTTC+TGG | - | chr1_1:57005548-57005567 | None:intergenic | 60.0% | |
| ! | CAGAAGCACATGCCGCAGCA+TGG | + | chr1_1:57005546-57005565 | Msa0030620:CDS | 60.0% |
| GGAAGGGGGGGATGTAGGTT+TGG | - | chr1_1:57007285-57007304 | None:intergenic | 60.0% | |
| GGAGCAAGGGAATGGGAGGT+AGG | + | chr1_1:57008853-57008872 | Msa0030620:intron | 60.0% | |
| GTCGTTAGCGGCCTCGGCAA+AGG | + | chr1_1:57000316-57000335 | Msa0030620:CDS | 65.0% | |
| GGCGTCGTCCTCAAAGCCTG+CGG | + | chr1_1:57000358-57000377 | Msa0030620:CDS | 65.0% | |
| GGAAGGGAAGGGGGGGATGT+AGG | - | chr1_1:57007290-57007309 | None:intergenic | 65.0% | |
| ! | GAGCACGCACGTTTGGGGCA+TGG | - | chr1_1:57009489-57009508 | None:intergenic | 65.0% |
| GAGGCCGCTAACGACTCCGC+CGG | - | chr1_1:57000311-57000330 | None:intergenic | 70.0% | |
| GGCGGAGTCGTTAGCGGCCT+CGG | + | chr1_1:57000310-57000329 | Msa0030620:CDS | 70.0% | |
| TGGCGGTGACGCCTTTGCCG+AGG | - | chr1_1:57000330-57000349 | None:intergenic | 70.0% | |
| GGCGTCACCGCCAGCAGCAT+CGG | + | chr1_1:57000337-57000356 | Msa0030620:CDS | 70.0% | |
| GACGACGCCGATGCTGCTGG+CGG | - | chr1_1:57000347-57000366 | None:intergenic | 70.0% | |
| GAGGACGACGCCGATGCTGC+TGG | - | chr1_1:57000350-57000369 | None:intergenic | 70.0% | |
| CGCGGAGGCCGCAGGCTTTG+AGG | - | chr1_1:57000369-57000388 | None:intergenic | 75.0% | |
| ! | GGAGGTGACGCGGAGGCCGC+AGG | - | chr1_1:57000377-57000396 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 57000137 | 57009706 | 57000137 | ID=Msa0030620;Name=Msa0030620 |
| chr1_1 | mRNA | 57000137 | 57009706 | 57000137 | ID=Msa0030620-mRNA-1;Parent=Msa0030620;Name=Msa0030620-mRNA-1;_AED=0.18;_eAED=0.18;_QI=152|1|1|1|0.95|0.91|23|447|562 |
| chr1_1 | exon | 57000137 | 57000406 | 57000137 | ID=Msa0030620-mRNA-1:exon:17134;Parent=Msa0030620-mRNA-1 |
| chr1_1 | exon | 57000492 | 57000571 | 57000492 | ID=Msa0030620-mRNA-1:exon:17135;Parent=Msa0030620-mRNA-1 |
| chr1_1 | exon | 57000695 | 57000781 | 57000695 | ID=Msa0030620-mRNA-1:exon:17136;Parent=Msa0030620-mRNA-1 |
| chr1_1 | exon | 57000877 | 57000927 | 57000877 | ID=Msa0030620-mRNA-1:exon:17137;Parent=Msa0030620-mRNA-1 |
| chr1_1 | exon | 57001048 | 57001165 | 57001048 | ID=Msa0030620-mRNA-1:exon:17138;Parent=Msa0030620-mRNA-1 |
| chr1_1 | exon | 57001270 | 57001326 | 57001270 | ID=Msa0030620-mRNA-1:exon:17139;Parent=Msa0030620-mRNA-1 |
| chr1_1 | exon | 57002556 | 57002620 | 57002556 | ID=Msa0030620-mRNA-1:exon:17140;Parent=Msa0030620-mRNA-1 |
| chr1_1 | exon | 57002703 | 57002786 | 57002703 | ID=Msa0030620-mRNA-1:exon:17141;Parent=Msa0030620-mRNA-1 |
| chr1_1 | exon | 57003734 | 57003784 | 57003734 | ID=Msa0030620-mRNA-1:exon:17142;Parent=Msa0030620-mRNA-1 |
| chr1_1 | exon | 57003876 | 57003938 | 57003876 | ID=Msa0030620-mRNA-1:exon:17143;Parent=Msa0030620-mRNA-1 |
| chr1_1 | exon | 57004032 | 57004078 | 57004032 | ID=Msa0030620-mRNA-1:exon:17144;Parent=Msa0030620-mRNA-1 |
| chr1_1 | exon | 57004708 | 57004777 | 57004708 | ID=Msa0030620-mRNA-1:exon:17145;Parent=Msa0030620-mRNA-1 |
| chr1_1 | exon | 57004867 | 57004929 | 57004867 | ID=Msa0030620-mRNA-1:exon:17146;Parent=Msa0030620-mRNA-1 |
| chr1_1 | exon | 57005351 | 57005440 | 57005351 | ID=Msa0030620-mRNA-1:exon:17147;Parent=Msa0030620-mRNA-1 |
| chr1_1 | exon | 57005542 | 57005580 | 57005542 | ID=Msa0030620-mRNA-1:exon:17148;Parent=Msa0030620-mRNA-1 |
| chr1_1 | exon | 57006138 | 57006287 | 57006138 | ID=Msa0030620-mRNA-1:exon:17149;Parent=Msa0030620-mRNA-1 |
| chr1_1 | exon | 57006373 | 57006450 | 57006373 | ID=Msa0030620-mRNA-1:exon:17150;Parent=Msa0030620-mRNA-1 |
| chr1_1 | exon | 57006528 | 57006613 | 57006528 | ID=Msa0030620-mRNA-1:exon:17151;Parent=Msa0030620-mRNA-1 |
| chr1_1 | exon | 57007849 | 57007897 | 57007849 | ID=Msa0030620-mRNA-1:exon:17152;Parent=Msa0030620-mRNA-1 |
| chr1_1 | exon | 57007987 | 57008067 | 57007987 | ID=Msa0030620-mRNA-1:exon:17153;Parent=Msa0030620-mRNA-1 |
| chr1_1 | exon | 57008265 | 57008358 | 57008265 | ID=Msa0030620-mRNA-1:exon:17154;Parent=Msa0030620-mRNA-1 |
| chr1_1 | exon | 57008707 | 57008821 | 57008707 | ID=Msa0030620-mRNA-1:exon:17155;Parent=Msa0030620-mRNA-1 |
| chr1_1 | exon | 57009307 | 57009706 | 57009307 | ID=Msa0030620-mRNA-1:exon:17156;Parent=Msa0030620-mRNA-1 |
| chr1_1 | five_prime_UTR | 57000137 | 57000288 | 57000137 | ID=Msa0030620-mRNA-1:five_prime_utr;Parent=Msa0030620-mRNA-1 |
| chr1_1 | CDS | 57000289 | 57000406 | 57000289 | ID=Msa0030620-mRNA-1:cds;Parent=Msa0030620-mRNA-1 |
| chr1_1 | CDS | 57000492 | 57000571 | 57000492 | ID=Msa0030620-mRNA-1:cds;Parent=Msa0030620-mRNA-1 |
| chr1_1 | CDS | 57000695 | 57000781 | 57000695 | ID=Msa0030620-mRNA-1:cds;Parent=Msa0030620-mRNA-1 |
| chr1_1 | CDS | 57000877 | 57000927 | 57000877 | ID=Msa0030620-mRNA-1:cds;Parent=Msa0030620-mRNA-1 |
| chr1_1 | CDS | 57001048 | 57001165 | 57001048 | ID=Msa0030620-mRNA-1:cds;Parent=Msa0030620-mRNA-1 |
| chr1_1 | CDS | 57001270 | 57001326 | 57001270 | ID=Msa0030620-mRNA-1:cds;Parent=Msa0030620-mRNA-1 |
| chr1_1 | CDS | 57002556 | 57002620 | 57002556 | ID=Msa0030620-mRNA-1:cds;Parent=Msa0030620-mRNA-1 |
| chr1_1 | CDS | 57002703 | 57002786 | 57002703 | ID=Msa0030620-mRNA-1:cds;Parent=Msa0030620-mRNA-1 |
| chr1_1 | CDS | 57003734 | 57003784 | 57003734 | ID=Msa0030620-mRNA-1:cds;Parent=Msa0030620-mRNA-1 |
| chr1_1 | CDS | 57003876 | 57003938 | 57003876 | ID=Msa0030620-mRNA-1:cds;Parent=Msa0030620-mRNA-1 |
| chr1_1 | CDS | 57004032 | 57004078 | 57004032 | ID=Msa0030620-mRNA-1:cds;Parent=Msa0030620-mRNA-1 |
| chr1_1 | CDS | 57004708 | 57004777 | 57004708 | ID=Msa0030620-mRNA-1:cds;Parent=Msa0030620-mRNA-1 |
| chr1_1 | CDS | 57004867 | 57004929 | 57004867 | ID=Msa0030620-mRNA-1:cds;Parent=Msa0030620-mRNA-1 |
| chr1_1 | CDS | 57005351 | 57005440 | 57005351 | ID=Msa0030620-mRNA-1:cds;Parent=Msa0030620-mRNA-1 |
| chr1_1 | CDS | 57005542 | 57005580 | 57005542 | ID=Msa0030620-mRNA-1:cds;Parent=Msa0030620-mRNA-1 |
| chr1_1 | CDS | 57006138 | 57006287 | 57006138 | ID=Msa0030620-mRNA-1:cds;Parent=Msa0030620-mRNA-1 |
| chr1_1 | CDS | 57006373 | 57006450 | 57006373 | ID=Msa0030620-mRNA-1:cds;Parent=Msa0030620-mRNA-1 |
| chr1_1 | CDS | 57006528 | 57006613 | 57006528 | ID=Msa0030620-mRNA-1:cds;Parent=Msa0030620-mRNA-1 |
| chr1_1 | CDS | 57007849 | 57007897 | 57007849 | ID=Msa0030620-mRNA-1:cds;Parent=Msa0030620-mRNA-1 |
| chr1_1 | CDS | 57007987 | 57008067 | 57007987 | ID=Msa0030620-mRNA-1:cds;Parent=Msa0030620-mRNA-1 |
| chr1_1 | CDS | 57008265 | 57008358 | 57008265 | ID=Msa0030620-mRNA-1:cds;Parent=Msa0030620-mRNA-1 |
| chr1_1 | CDS | 57008707 | 57008774 | 57008707 | ID=Msa0030620-mRNA-1:cds;Parent=Msa0030620-mRNA-1 |
| chr1_1 | three_prime_UTR | 57008775 | 57008821 | 57008775 | ID=Msa0030620-mRNA-1:three_prime_utr;Parent=Msa0030620-mRNA-1 |
| chr1_1 | three_prime_UTR | 57009307 | 57009706 | 57009307 | ID=Msa0030620-mRNA-1:three_prime_utr;Parent=Msa0030620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
