Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138720 | XP_024639356.1 | 99.644 | 562 | 2 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138720 | sp|Q54V77|PYRG_DICDI | 60.808 | 569 | 203 | 6 | 1 | 551 | 1 | 567 | 0.0 | 707 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138720 | G7IDT8 | 99.644 | 562 | 2 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1154 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030620 | Msa0138720 | 0.989729 | 2.172129e-179 | -8.615850e-47 |
| Msa0082150 | Msa0138720 | 0.904095 | 1.755238e-79 | -8.615850e-47 |
| Msa0128510 | Msa0138720 | 0.926895 | 2.498007e-91 | -8.615850e-47 |
| Msa0138720 | Msa0174530 | 0.932366 | 9.488584e-95 | -8.615850e-47 |
| Msa0138720 | Msa0769390 | 0.804069 | 2.578761e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138720 | MtrunA17_Chr1g0195001 | 99.644 | 562 | 2 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1154 |
| Msa0138720 | MtrunA17_Chr8g0356221 | 71.404 | 570 | 155 | 2 | 1 | 562 | 1 | 570 | 0.0 | 855 |
| Msa0138720 | MtrunA17_Chr2g0309341 | 72.894 | 546 | 148 | 0 | 1 | 546 | 1 | 546 | 0.0 | 841 |
| Msa0138720 | MtrunA17_Chr8g0369081 | 71.196 | 552 | 159 | 0 | 1 | 552 | 1 | 552 | 0.0 | 835 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138720 | AT4G02120.1 | 83.813 | 556 | 90 | 0 | 1 | 556 | 1 | 556 | 0.0 | 981 |
| Msa0138720 | AT4G02120.2 | 80.623 | 578 | 90 | 1 | 1 | 556 | 1 | 578 | 0.0 | 971 |
| Msa0138720 | AT4G02120.5 | 79.137 | 556 | 77 | 1 | 1 | 556 | 1 | 517 | 0.0 | 905 |
| Msa0138720 | AT4G02120.3 | 86.570 | 484 | 65 | 0 | 1 | 484 | 1 | 484 | 0.0 | 875 |
| Msa0138720 | AT3G12670.1 | 73.732 | 552 | 144 | 1 | 1 | 552 | 1 | 551 | 0.0 | 846 |
| Msa0138720 | AT4G02120.4 | 86.910 | 466 | 61 | 0 | 1 | 466 | 1 | 466 | 0.0 | 843 |
| Msa0138720 | AT1G30820.1 | 70.780 | 551 | 161 | 0 | 1 | 551 | 1 | 551 | 0.0 | 833 |
| Msa0138720 | AT4G20320.2 | 70.054 | 551 | 165 | 0 | 1 | 551 | 1 | 551 | 0.0 | 805 |
| Msa0138720 | AT4G20320.5 | 70.054 | 551 | 165 | 0 | 1 | 551 | 1 | 551 | 0.0 | 805 |
| Msa0138720 | AT4G20320.6 | 70.054 | 551 | 165 | 0 | 1 | 551 | 1 | 551 | 0.0 | 805 |
| Msa0138720 | AT4G20320.4 | 70.054 | 551 | 165 | 0 | 1 | 551 | 1 | 551 | 0.0 | 805 |
| Msa0138720 | AT4G20320.1 | 70.054 | 551 | 165 | 0 | 1 | 551 | 1 | 551 | 0.0 | 805 |
| Msa0138720 | AT2G34890.1 | 65.480 | 562 | 192 | 1 | 1 | 560 | 1 | 562 | 0.0 | 785 |
| Msa0138720 | AT4G20320.3 | 68.526 | 502 | 158 | 0 | 50 | 551 | 1 | 502 | 0.0 | 738 |
Find 175 sgRNAs with CRISPR-Local
Find 600 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGATAATATTATAATTA+TGG | 0.126755 | 1_3:+71901020 | Msa0138720:three_prime_UTR |
| GAGCGGGAAGGTTGATATTT+TGG | 0.186108 | 1_3:-71891555 | None:intergenic |
| TTCATGATGTACCAAATATT+TGG | 0.205073 | 1_3:+71895242 | Msa0138720:CDS |
| ATTGTTCTCTCTGGCATATT+TGG | 0.242741 | 1_3:-71897552 | None:intergenic |
| TTTATAGGTTGATTTGGATT+TGG | 0.257444 | 1_3:+71892036 | Msa0138720:intron |
| TTATAGGTTGATTTGGATTT+GGG | 0.261073 | 1_3:+71892037 | Msa0138720:intron |
| GCAGCTTGTGTCTTGGTTCC+AGG | 0.262807 | 1_3:+71897488 | Msa0138720:CDS |
| CATGCTGCGGCATGTGCTTC+TGG | 0.277150 | 1_3:-71896892 | None:intergenic |
| GTCTTGGTTCCAGGAGGATT+TGG | 0.288037 | 1_3:+71897497 | Msa0138720:CDS |
| AGGGGAATATGCCAAATATT+TGG | 0.292011 | 1_3:-71895253 | None:intergenic |
| ATGAAAATTACAACAGGATT+TGG | 0.292322 | 1_3:-71897768 | None:intergenic |
| TTACAACAGGATTTGGTGTT+TGG | 0.292770 | 1_3:-71897761 | None:intergenic |
| AATTGCACGCCTACATAATA+TGG | 0.299023 | 1_3:-71899633 | None:intergenic |
| GAAAAGGAGCACGCACGTTT+GGG | 0.306880 | 1_3:-71900839 | None:intergenic |
| GAAGATAATATTATAATTAT+GGG | 0.320733 | 1_3:+71901021 | Msa0138720:three_prime_UTR |
| CTAGTCATAAACAGGGTTCT+AGG | 0.329918 | 1_3:+71897861 | Msa0138720:intron |
| AGAGACTCACTCTAAGTAAC+AGG | 0.332129 | 1_3:-71895273 | None:intergenic |
| GCCTGTGAGTGTCAGGTTAA+TGG | 0.343980 | 1_3:-71900762 | None:intergenic |
| AGAAAAGGAGCACGCACGTT+TGG | 0.345282 | 1_3:-71900840 | None:intergenic |
| GGGTCTTCATTTCCATCAAC+CGG | 0.349986 | 1_3:-71892453 | None:intergenic |
| GGCGGAGTCGTTAGCGGCCT+CGG | 0.350600 | 1_3:+71891657 | Msa0138720:CDS |
| AGCCGACACAACACAGTGTC+AGG | 0.360915 | 1_3:+71894057 | Msa0138720:CDS |
| CCTTACTTGGGGATTTGCTT+GGG | 0.363800 | 1_3:+71897578 | Msa0138720:CDS |
| CCAGGCCGAGATTTGAATTC+GGG | 0.365733 | 1_3:-71899660 | None:intergenic |
| TACAACAGGATTTGGTGTTT+GGG | 0.372108 | 1_3:-71897760 | None:intergenic |
| TCCTTACTTGGGGATTTGCT+TGG | 0.377880 | 1_3:+71897577 | Msa0138720:CDS |
| CCCAGGCCGAGATTTGAATT+CGG | 0.381611 | 1_3:-71899661 | None:intergenic |
| CTACACCCAACACTGGTATC+AGG | 0.389842 | 1_3:-71893934 | None:intergenic |
| TACTACTGGGAAAATATATC+AGG | 0.394580 | 1_3:+71892108 | Msa0138720:CDS |
| ATTGAAACTTTAGAAGAAGC+TGG | 0.397254 | 1_3:+71899349 | Msa0138720:CDS |
| CGCGGAGGCCGCAGGCTTTG+AGG | 0.401516 | 1_3:-71891713 | None:intergenic |
| GATCTACGATTCTTTACTAT+AGG | 0.408278 | 1_3:+71900120 | Msa0138720:exon |
| ATTCAATGTGCAGCCTCTGC+TGG | 0.411306 | 1_3:+71895068 | Msa0138720:intron |
| AGAGAACAATGTTCCTTACT+TGG | 0.411823 | 1_3:+71897565 | Msa0138720:CDS |
| TCACCGATGCAATCAGAAAC+TGG | 0.416127 | 1_3:+71892409 | Msa0138720:CDS |
| TCAGTCCATTGCCGCAAATC+AGG | 0.416330 | 1_3:-71896068 | None:intergenic |
| TTTGCGGCAATGGACTGATA+TGG | 0.421515 | 1_3:+71896073 | Msa0138720:CDS |
| TTTATAAGCCTGTGAGTGTC+AGG | 0.421744 | 1_3:-71900769 | None:intergenic |
| GGTCTCATATTGGCAGCAAC+GGG | 0.423607 | 1_3:+71900053 | Msa0138720:intron |
| AAGGATAATAATATTACTAC+TGG | 0.423934 | 1_3:+71892094 | Msa0138720:CDS |
| GCTGCAATCCAGTCAATTGA+TGG | 0.432899 | 1_3:-71896734 | None:intergenic |
| CGCGTCACCTCCATCAAAAT+CGG | 0.434250 | 1_3:+71891732 | Msa0138720:CDS |
| TTCATATTTATCTGTTGTAA+AGG | 0.435122 | 1_3:+71896255 | Msa0138720:CDS |
| CACCTCCTGATTTGCGGCAA+TGG | 0.440971 | 1_3:+71896063 | Msa0138720:CDS |
| CTGGGCTAAAATTTGTTGGC+AGG | 0.443903 | 1_3:+71899368 | Msa0138720:CDS |
| TGCCGTAGAGCCTCAATAAA+CGG | 0.445911 | 1_3:-71892635 | None:intergenic |
| TGACATTGTTCAGGTAAATC+CGG | 0.446706 | 1_3:+71899321 | Msa0138720:intron |
| GTTGCTGTGATCCCGGTTGA+TGG | 0.447710 | 1_3:+71892441 | Msa0138720:CDS |
| GATGTTTGTGTGATTGAGCT+TGG | 0.449727 | 1_3:+71892480 | Msa0138720:CDS |
| GAGGACGACGCCGATGCTGC+TGG | 0.450311 | 1_3:-71891694 | None:intergenic |
| GAGAACAATGTTCCTTACTT+GGG | 0.452256 | 1_3:+71897566 | Msa0138720:CDS |
| ATTGGCAGCAACGGGGAAGT+TGG | 0.452434 | 1_3:+71900061 | Msa0138720:CDS |
| ATTGTGCACTGTCATCTTCA+AGG | 0.452441 | 1_3:-71896763 | None:intergenic |
| AATTACCAGGTATGGCAATT+CGG | 0.452917 | 1_3:+71899187 | Msa0138720:intron |
| ATGAAGTACGTTCTCATCTC+CGG | 0.453080 | 1_3:+71891636 | Msa0138720:CDS |
| GCAGAGTGCAGCTTGTGTCT+TGG | 0.454760 | 1_3:+71897481 | Msa0138720:intron |
| GATACCAGTGTTGGGTGTAG+TGG | 0.458939 | 1_3:+71893937 | Msa0138720:CDS |
| TCTAAAGTTTCAATAACATC+CGG | 0.459751 | 1_3:-71899340 | None:intergenic |
| GTCGTTAGCGGCCTCGGCAA+AGG | 0.462544 | 1_3:+71891663 | Msa0138720:CDS |
| AGTTTCATTTCATTTCATCT+TGG | 0.462595 | 1_3:+71891510 | Msa0138720:five_prime_UTR |
| AAAACTTCTCCATGTTCAAA+AGG | 0.464491 | 1_3:-71891875 | None:intergenic |
| GTCAGGGAACTAAGAGCATT+GGG | 0.465525 | 1_3:+71894074 | Msa0138720:CDS |
| CCCGAATTCAAATCTCGGCC+TGG | 0.467639 | 1_3:+71899660 | Msa0138720:CDS |
| GGAATGAATGAATGAGTTGT+AGG | 0.469905 | 1_3:-71891600 | None:intergenic |
| ATCACTAGCATTCATGAGAA+TGG | 0.472024 | 1_3:+71900092 | Msa0138720:CDS |
| GAAGCTGGGCTAAAATTTGT+TGG | 0.472530 | 1_3:+71899364 | Msa0138720:CDS |
| CATTGAGACCATCAATTGAC+TGG | 0.472847 | 1_3:+71896726 | Msa0138720:CDS |
| ATACCAGTGTTGGGTGTAGT+GGG | 0.477063 | 1_3:+71893938 | Msa0138720:CDS |
| GTAAGGAACATTGTTCTCTC+TGG | 0.480928 | 1_3:-71897561 | None:intergenic |
| GGAGGTGACGCGGAGGCCGC+AGG | 0.484019 | 1_3:-71891721 | None:intergenic |
| AACAAAGCAGATGGTCTCCC+AGG | 0.484640 | 1_3:-71899678 | None:intergenic |
| GGCGTCACCGCCAGCAGCAT+CGG | 0.487935 | 1_3:+71891684 | Msa0138720:CDS |
| TCAATCACACAAACATCAGC+AGG | 0.489125 | 1_3:-71892474 | None:intergenic |
| TACTTAGTCACTCATTATGA+AGG | 0.490591 | 1_3:+71900962 | Msa0138720:three_prime_UTR |
| CTATACTGTAGGTCTCATAT+TGG | 0.496171 | 1_3:+71900043 | Msa0138720:intron |
| CCTACATAATATGGATGACT+TGG | 0.496534 | 1_3:-71899624 | None:intergenic |
| CCCAAGCAAATCCCCAAGTA+AGG | 0.496781 | 1_3:-71897578 | None:intergenic |
| TACAGCAGCTTAACTTACTT+AGG | 0.505369 | 1_3:+71895404 | Msa0138720:CDS |
| CCGAATTCAAATCTCGGCCT+GGG | 0.505440 | 1_3:+71899661 | Msa0138720:CDS |
| TTGAAACTTTAGAAGAAGCT+GGG | 0.507446 | 1_3:+71899350 | Msa0138720:CDS |
| TGGATGAGACAGAAGTTGTC+AGG | 0.508265 | 1_3:-71893905 | None:intergenic |
| TCCTTGGTACTTTCCAGCAG+AGG | 0.508640 | 1_3:-71895081 | None:intergenic |
| TCTGGCATGAAAATTACAAC+AGG | 0.511552 | 1_3:-71897774 | None:intergenic |
| TGTCAGGGAACTAAGAGCAT+TGG | 0.513673 | 1_3:+71894073 | Msa0138720:CDS |
| TGCCGTTTATTGAGGCTCTA+CGG | 0.516145 | 1_3:+71892633 | Msa0138720:CDS |
| TTCTTAGTCTGTGCTTGAGA+AGG | 0.517567 | 1_3:+71892218 | Msa0138720:intron |
| TTCATCCCGAATTCAAATCT+CGG | 0.519745 | 1_3:+71899655 | Msa0138720:CDS |
| ACCATTAACCTGACACTCAC+AGG | 0.520204 | 1_3:+71900761 | Msa0138720:three_prime_UTR |
| GTATGGCAATTCGGAGTATG+TGG | 0.526581 | 1_3:+71899196 | Msa0138720:CDS |
| CCAGCGTCAATGTTCAAATA+CGG | 0.527929 | 1_3:-71891842 | None:intergenic |
| TGTTAGCCTGATACCAGTGT+TGG | 0.528405 | 1_3:+71893928 | Msa0138720:CDS |
| ACCAGTGTTGGGTGTAGTGG+GGG | 0.530013 | 1_3:+71893940 | Msa0138720:CDS |
| CCAAGTCATCCATATTATGT+AGG | 0.530338 | 1_3:+71899624 | Msa0138720:CDS |
| GGATGAAAGCGGAAGACGAA+TGG | 0.530600 | 1_3:+71899390 | Msa0138720:CDS |
| GTGCAACACAAGCATGCAGT+AGG | 0.531316 | 1_3:-71896700 | None:intergenic |
| TGAGTCTATGCCGTTTATTG+AGG | 0.534928 | 1_3:+71892625 | Msa0138720:CDS |
| CCACGATCTCCAAATCCTCC+TGG | 0.535514 | 1_3:-71897506 | None:intergenic |
| GAGCACGCACGTTTGGGGCA+TGG | 0.537304 | 1_3:-71900833 | None:intergenic |
| TGAGTCGGTTGCTGTGATCC+CGG | 0.538290 | 1_3:+71892434 | Msa0138720:CDS |
| ATCTCCGGCGGAGTCGTTAG+CGG | 0.542697 | 1_3:+71891651 | Msa0138720:CDS |
| GTTTGTGTGATTGAGCTTGG+AGG | 0.545170 | 1_3:+71892483 | Msa0138720:CDS |
| GTGCTACACCTCCTGATTTG+CGG | 0.545667 | 1_3:+71896057 | Msa0138720:CDS |
| TCCCTGACACTGTGTTGTGT+CGG | 0.548570 | 1_3:-71894059 | None:intergenic |
| TTTGGAGATCGTGGTGTGAG+AGG | 0.552633 | 1_3:+71897515 | Msa0138720:CDS |
| GTTAGCCTGATACCAGTGTT+GGG | 0.554596 | 1_3:+71893929 | Msa0138720:CDS |
| TCTTGATGTTACACTTACAA+AGG | 0.556810 | 1_3:+71892075 | Msa0138720:CDS |
| AGAACAATGTTCCTTACTTG+GGG | 0.557436 | 1_3:+71897567 | Msa0138720:CDS |
| TGGGCTAAAATTTGTTGGCA+GGG | 0.558448 | 1_3:+71899369 | Msa0138720:CDS |
| TGCTGTCATACCCACTTGAA+AGG | 0.561108 | 1_3:-71892663 | None:intergenic |
| AGGTCTCATATTGGCAGCAA+CGG | 0.563048 | 1_3:+71900052 | Msa0138720:intron |
| TACCAGTGTTGGGTGTAGTG+GGG | 0.563851 | 1_3:+71893939 | Msa0138720:CDS |
| ACACTGGTATCAGGCTAACA+TGG | 0.566475 | 1_3:-71893925 | None:intergenic |
| TGTGCTTGAGAAGGAGCGCA+AGG | 0.569431 | 1_3:+71892227 | Msa0138720:CDS |
| CCAGGAGGATTTGGAGATCG+TGG | 0.581850 | 1_3:+71897506 | Msa0138720:CDS |
| AATCCAGTTTCTGATTGCAT+CGG | 0.583198 | 1_3:-71892412 | None:intergenic |
| GAGCGCAAGGGAGATTATCT+CGG | 0.583903 | 1_3:+71892240 | Msa0138720:CDS |
| GTTTGTGTTTATATCCGAGC+GGG | 0.589396 | 1_3:-71891571 | None:intergenic |
| CAGGTTAGGATTGCCATGGT+GGG | 0.589890 | 1_3:+71896211 | Msa0138720:intron |
| TTATAATTATGGGTTATGAG+TGG | 0.590260 | 1_3:+71901031 | Msa0138720:three_prime_UTR |
| ATGGGAAGTACCATGAGACT+TGG | 0.591140 | 1_3:+71897890 | Msa0138720:CDS |
| TCCATGTTCAAAAGGAGACA+TGG | 0.591963 | 1_3:-71891867 | None:intergenic |
| GCAAATCAGGAGGTGTAGCA+CGG | 0.592136 | 1_3:-71896055 | None:intergenic |
| TTTACAGGTTAGGATTGCCA+TGG | 0.595375 | 1_3:+71896207 | Msa0138720:intron |
| TGCAACACAAGCATGCAGTA+GGG | 0.596048 | 1_3:-71896699 | None:intergenic |
| AAAATATCAACCTTCCCGCT+CGG | 0.598030 | 1_3:+71891557 | Msa0138720:five_prime_UTR |
| ATTGAGCTTGGAGGCACTGT+GGG | 0.598258 | 1_3:+71892492 | Msa0138720:CDS |
| TGATTGTTTGATGTGTATAG+AGG | 0.598464 | 1_3:+71900672 | Msa0138720:three_prime_UTR |
| TGGCGGTGACGCCTTTGCCG+AGG | 0.599015 | 1_3:-71891674 | None:intergenic |
| ACAGGTTAGGATTGCCATGG+TGG | 0.599284 | 1_3:+71896210 | Msa0138720:intron |
| ACGGCAATTATCCTTTCAAG+TGG | 0.601495 | 1_3:+71892652 | Msa0138720:CDS |
| CAGAAGCACATGCCGCAGCA+TGG | 0.601979 | 1_3:+71896893 | Msa0138720:CDS |
| GAGGCCGCTAACGACTCCGC+CGG | 0.602079 | 1_3:-71891655 | None:intergenic |
| GGGGCATGGTGAACTGAACA+AGG | 0.602093 | 1_3:-71900819 | None:intergenic |
| TTTAGCAAGTCGCTCTGCTG+AGG | 0.603158 | 1_3:+71894112 | Msa0138720:CDS |
| GTGTTTATATCCGAGCGGGA+AGG | 0.606105 | 1_3:-71891567 | None:intergenic |
| ACTGAAAACTTACTGGAACA+TGG | 0.606549 | 1_3:-71895122 | None:intergenic |
| CTTCAGAGTCTTCCATGCTG+CGG | 0.607051 | 1_3:-71896905 | None:intergenic |
| CTGCTGTAAAATTGAGTGGT+GGG | 0.610647 | 1_3:-71895389 | None:intergenic |
| CTGATTGCATCGGTGATATG+CGG | 0.611112 | 1_3:-71892402 | None:intergenic |
| ATTCGGAGTATGTGGATGAA+CGG | 0.613690 | 1_3:+71899204 | Msa0138720:CDS |
| GAGCGACTTGCTAAAAGATG+AGG | 0.613956 | 1_3:-71894104 | None:intergenic |
| GCTTGTGTCTTGGTTCCAGG+AGG | 0.614810 | 1_3:+71897491 | Msa0138720:CDS |
| GGTCTTCATTTCCATCAACC+GGG | 0.617073 | 1_3:-71892452 | None:intergenic |
| AAAAGGAGCACGCACGTTTG+GGG | 0.618322 | 1_3:-71900838 | None:intergenic |
| TCTTCGAGATCCAAGTCTCA+TGG | 0.624956 | 1_3:-71897900 | None:intergenic |
| TGAAAGCGGAAGACGAATGG+AGG | 0.626991 | 1_3:+71899393 | Msa0138720:CDS |
| GCCATGGTGGGAAAATATGT+TGG | 0.628848 | 1_3:+71896223 | Msa0138720:CDS |
| GTCCATTGCCGCAAATCAGG+AGG | 0.628942 | 1_3:-71896065 | None:intergenic |
| CGGCAATTATCCTTTCAAGT+GGG | 0.631841 | 1_3:+71892653 | Msa0138720:CDS |
| GCCGACACAACACAGTGTCA+GGG | 0.640779 | 1_3:+71894058 | Msa0138720:CDS |
| GCCTCTGCTGGAAAGTACCA+AGG | 0.645176 | 1_3:+71895080 | Msa0138720:intron |
| ACAGGGTTCTAGGACTCACA+TGG | 0.646100 | 1_3:+71897871 | Msa0138720:intron |
| GAGACTCACTCTAAGTAACA+GGG | 0.646615 | 1_3:-71895272 | None:intergenic |
| TGTTCTTGATGATGGCGGAG+AGG | 0.649503 | 1_3:+71891898 | Msa0138720:CDS |
| GATTGAGCTTGGAGGCACTG+TGG | 0.652060 | 1_3:+71892491 | Msa0138720:CDS |
| CGCAGCATGGAAGACTCTGA+AGG | 0.652129 | 1_3:+71896906 | Msa0138720:CDS |
| GTGCTTGAGAAGGAGCGCAA+GGG | 0.658499 | 1_3:+71892228 | Msa0138720:CDS |
| CCGTATTTGAACATTGACGC+TGG | 0.659655 | 1_3:+71891842 | Msa0138720:CDS |
| AATCAGAAACTGGATTGAGT+CGG | 0.661872 | 1_3:+71892419 | Msa0138720:CDS |
| GCTGCTGTAAAATTGAGTGG+TGG | 0.662926 | 1_3:-71895390 | None:intergenic |
| TTTGTTGGCAGGGATGAAAG+CGG | 0.667172 | 1_3:+71899379 | Msa0138720:CDS |
| AGGATAATAATATTACTACT+GGG | 0.667804 | 1_3:+71892095 | Msa0138720:CDS |
| AAGTACGTTCTCATCTCCGG+CGG | 0.672070 | 1_3:+71891639 | Msa0138720:CDS |
| TAAGCTGCTGTAAAATTGAG+TGG | 0.672139 | 1_3:-71895393 | None:intergenic |
| ATGTGTATAGAGGTCTGAAG+CGG | 0.677343 | 1_3:+71900682 | Msa0138720:three_prime_UTR |
| GACGACGCCGATGCTGCTGG+CGG | 0.688026 | 1_3:-71891691 | None:intergenic |
| GGCGTCGTCCTCAAAGCCTG+CGG | 0.692971 | 1_3:+71891705 | Msa0138720:CDS |
| CAATCACACAAACATCAGCA+GGG | 0.701082 | 1_3:-71892473 | None:intergenic |
| AGACTCACTCTAAGTAACAG+GGG | 0.704240 | 1_3:-71895271 | None:intergenic |
| CAGGGTTCTAGGACTCACAT+GGG | 0.704702 | 1_3:+71897872 | Msa0138720:intron |
| AAATTAACTTGCTTATAGTG+TGG | 0.711685 | 1_3:-71900724 | None:intergenic |
| GTCTCATATTGGCAGCAACG+GGG | 0.722190 | 1_3:+71900054 | Msa0138720:CDS |
| TAGTACTAACAGATTCAGTG+AGG | 0.746597 | 1_3:-71896112 | None:intergenic |
| ACGGCATCGTCATAGATACG+AGG | 0.761487 | 1_3:+71899223 | Msa0138720:CDS |
| TGTTTGTGTTTATATCCGAG+CGG | 0.765064 | 1_3:-71891572 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAATTGAGAAA+CGG | - | chr1_3:71891813-71891832 | None:intergenic | 10.0% |
| !!! | AGTTCAATTTTAATTTATTA+TGG | + | chr1_3:71891960-71891979 | Msa0138720:intron | 10.0% |
| !! | TAATAAATTAAAGATTATCT+GGG | - | chr1_3:71895167-71895186 | None:intergenic | 10.0% |
| !! | TCTAAAAAAATTAAAAAAAG+GGG | + | chr1_3:71896605-71896624 | Msa0138720:intron | 10.0% |
| !! | TGAAGATAATATTATAATTA+TGG | + | chr1_3:71901020-71901039 | Msa0138720:three_prime_UTR | 10.0% |
| !! | GAAGATAATATTATAATTAT+GGG | + | chr1_3:71901021-71901040 | Msa0138720:three_prime_UTR | 10.0% |
| !!! | ATTTTAATTTATTATGGTTC+TGG | + | chr1_3:71891966-71891985 | Msa0138720:intron | 15.0% |
| !!! | AATTTTATTTAAGATCAATC+TGG | + | chr1_3:71893008-71893027 | Msa0138720:intron | 15.0% |
| !!! | TGATGTTTTATTTGATATTA+TGG | + | chr1_3:71893617-71893636 | Msa0138720:intron | 15.0% |
| !!! | AAAAATACGTATGTTTTTAT+AGG | + | chr1_3:71893652-71893671 | Msa0138720:intron | 15.0% |
| !!! | AAAATACGTATGTTTTTATA+GGG | + | chr1_3:71893653-71893672 | Msa0138720:intron | 15.0% |
| !!! | TATAATCATTATTTTGCATT+TGG | + | chr1_3:71894352-71894371 | Msa0138720:intron | 15.0% |
| !! | AATAAAGATTAAAAGTTTGT+CGG | - | chr1_3:71894492-71894511 | None:intergenic | 15.0% |
| !! | CTAATAAATTAAAGATTATC+TGG | - | chr1_3:71895168-71895187 | None:intergenic | 15.0% |
| !!! | TCAAATTTTTTCATCAATTA+AGG | - | chr1_3:71895575-71895594 | None:intergenic | 15.0% |
| !!! | ATATTTTTTTCGTTTAAATC+TGG | + | chr1_3:71896410-71896429 | Msa0138720:intron | 15.0% |
| !! | AAATTGCATTTAAAGAAATT+TGG | + | chr1_3:71896803-71896822 | Msa0138720:intron | 15.0% |
| !!! | GCTTATTTAATTTTATTTTG+TGG | + | chr1_3:71896852-71896871 | Msa0138720:intron | 15.0% |
| !!! | GTAATTTAAAATCTATTCTT+AGG | + | chr1_3:71897698-71897717 | Msa0138720:intron | 15.0% |
| !!! | ATTTTATGTAAATGAATATC+AGG | + | chr1_3:71898200-71898219 | Msa0138720:intron | 15.0% |
| !! | AATAGTAGAATATATTACTT+TGG | + | chr1_3:71898373-71898392 | Msa0138720:intron | 15.0% |
| !!! | TCATTAAGAAACATTTTAAA+CGG | + | chr1_3:71900986-71901005 | Msa0138720:three_prime_UTR | 15.0% |
| !!! | TTTTGCTTTTTGACTTTTAT+AGG | + | chr1_3:71892021-71892040 | Msa0138720:intron | 20.0% |
| !! | AAGGATAATAATATTACTAC+TGG | + | chr1_3:71892094-71892113 | Msa0138720:CDS | 20.0% |
| !! | AGGATAATAATATTACTACT+GGG | + | chr1_3:71892095-71892114 | Msa0138720:CDS | 20.0% |
| !!! | TTTATGTTGATTTTGCTTTA+TGG | + | chr1_3:71892182-71892201 | Msa0138720:intron | 20.0% |
| !!! | TGATATTTTTGTTGATCTAT+AGG | + | chr1_3:71892596-71892615 | Msa0138720:intron | 20.0% |
| !!! | GATATTTTTGTTGATCTATA+GGG | + | chr1_3:71892597-71892616 | Msa0138720:intron | 20.0% |
| !!! | ATATTTTTGTTGATCTATAG+GGG | + | chr1_3:71892598-71892617 | Msa0138720:intron | 20.0% |
| !! | TCTTTACCTTTAGTATTATA+TGG | - | chr1_3:71892837-71892856 | None:intergenic | 20.0% |
| !! | TACATATAATCCAAATACTT+AGG | + | chr1_3:71892947-71892966 | Msa0138720:intron | 20.0% |
| !!! | ATAATTCTATGTACCATTTT+TGG | + | chr1_3:71893037-71893056 | Msa0138720:intron | 20.0% |
| !! | TGCTTAAATTTCAAATGTAT+TGG | + | chr1_3:71893145-71893164 | Msa0138720:intron | 20.0% |
| !! | TCTTAAAAGATGTACATTTA+TGG | + | chr1_3:71893495-71893514 | Msa0138720:intron | 20.0% |
| !! | TTTATTTGATATTATGGCAT+TGG | + | chr1_3:71893623-71893642 | Msa0138720:intron | 20.0% |
| !!! | AGTTAATTTTAAATGCATCT+AGG | - | chr1_3:71894160-71894179 | None:intergenic | 20.0% |
| !! | TAAAATTAACTGTGTAACAA+TGG | + | chr1_3:71894169-71894188 | Msa0138720:intron | 20.0% |
| !! | AGATAATATATTTCTCTGTT+TGG | + | chr1_3:71894554-71894573 | Msa0138720:intron | 20.0% |
| !! | GTAAATCAATAAATAGATTG+TGG | + | chr1_3:71894720-71894739 | Msa0138720:intron | 20.0% |
| !!! | TTGTCTTTTATTTTCATAAC+TGG | + | chr1_3:71895439-71895458 | Msa0138720:intron | 20.0% |
| !! | AAAAACTATAAGTCATATGT+TGG | + | chr1_3:71895853-71895872 | Msa0138720:intron | 20.0% |
| !! | TTCATATTTATCTGTTGTAA+AGG | + | chr1_3:71896255-71896274 | Msa0138720:CDS | 20.0% |
| !! | AATCCAAATATGTTGATATT+CGG | - | chr1_3:71896571-71896590 | None:intergenic | 20.0% |
| !!! | AAATTAAAAAAAGGGGTTTT+TGG | + | chr1_3:71896612-71896631 | Msa0138720:intron | 20.0% |
| !! | ATCATAGATATTAAAGCAAT+GGG | - | chr1_3:71897075-71897094 | None:intergenic | 20.0% |
| !! | ACAAAATTTCAGATTCAATA+TGG | - | chr1_3:71897321-71897340 | None:intergenic | 20.0% |
| !! | TGTAATGACAATATTTGTTT+GGG | + | chr1_3:71897446-71897465 | Msa0138720:intron | 20.0% |
| !!! | TAAAATCTATTCTTAGGTTT+TGG | + | chr1_3:71897704-71897723 | Msa0138720:intron | 20.0% |
| !!! | AAAATCTATTCTTAGGTTTT+GGG | + | chr1_3:71897705-71897724 | Msa0138720:intron | 20.0% |
| !!! | TGTAGTGTTTTAATAATTGA+TGG | + | chr1_3:71897985-71898004 | Msa0138720:intron | 20.0% |
| !! | GAAAAAAAAAGTTATCTGAT+GGG | - | chr1_3:71898067-71898086 | None:intergenic | 20.0% |
| !! | AGAAAAAAAAAGTTATCTGA+TGG | - | chr1_3:71898068-71898087 | None:intergenic | 20.0% |
| !!! | GATAACTTTTTTTTTCTTTC+TGG | + | chr1_3:71898071-71898090 | Msa0138720:intron | 20.0% |
| !! | GTAATATATTCTACTATTGT+GGG | - | chr1_3:71898371-71898390 | None:intergenic | 20.0% |
| !! | AGTAATATATTCTACTATTG+TGG | - | chr1_3:71898372-71898391 | None:intergenic | 20.0% |
| !! | TGTATACAACATTAATTAGA+GGG | + | chr1_3:71898399-71898418 | Msa0138720:intron | 20.0% |
| !!! | TAAATTCTTTAGGATTACAA+AGG | - | chr1_3:71898710-71898729 | None:intergenic | 20.0% |
| !!! | AGATTTGAAAAAGTTGATTT+TGG | + | chr1_3:71898776-71898795 | Msa0138720:intron | 20.0% |
| !! | GGAAAAGATGTAATATAATT+AGG | + | chr1_3:71898879-71898898 | Msa0138720:intron | 20.0% |
| !!! | TAATATAATTAGGAGTATGT+TGG | + | chr1_3:71898889-71898908 | Msa0138720:intron | 20.0% |
| !! | ACAATCAATTGAAGAATATA+TGG | - | chr1_3:71899059-71899078 | None:intergenic | 20.0% |
| !! | TCAATACTAAATTAGAAAAC+AGG | - | chr1_3:71899304-71899323 | None:intergenic | 20.0% |
| !! | GCTTATAATTTCTTGAAAAA+TGG | + | chr1_3:71899918-71899937 | Msa0138720:intron | 20.0% |
| !!! | ATTTCTACATTACTTTTCTA+AGG | + | chr1_3:71900147-71900166 | Msa0138720:three_prime_UTR | 20.0% |
| !! | ACAAATTATGTTAAATCAGA+AGG | - | chr1_3:71900608-71900627 | None:intergenic | 20.0% |
| ! | AGTTTCATTTCATTTCATCT+TGG | + | chr1_3:71891510-71891529 | Msa0138720:five_prime_UTR | 25.0% |
| !! | AGAACGTACTTCATATTTTT+GGG | - | chr1_3:71891630-71891649 | None:intergenic | 25.0% |
| !!! | TTGACTTTTATAGGTTGATT+TGG | + | chr1_3:71892030-71892049 | Msa0138720:intron | 25.0% |
| !!! | TTTATAGGTTGATTTGGATT+TGG | + | chr1_3:71892036-71892055 | Msa0138720:intron | 25.0% |
| !!! | TTATAGGTTGATTTGGATTT+GGG | + | chr1_3:71892037-71892056 | Msa0138720:intron | 25.0% |
| !! | GCTTGTTTCATTTTATGTTA+TGG | + | chr1_3:71892136-71892155 | Msa0138720:intron | 25.0% |
| !!! | TGAATAATGGATATTTTGTG+TGG | + | chr1_3:71892326-71892345 | Msa0138720:intron | 25.0% |
| !!! | TTTAGTATTATATGGACTAG+AGG | - | chr1_3:71892829-71892848 | None:intergenic | 25.0% |
| ! | TCTAGTCCATATAATACTAA+AGG | + | chr1_3:71892828-71892847 | Msa0138720:intron | 25.0% |
| !! | ACAAGTAATGTCAATTTTGT+TGG | + | chr1_3:71892909-71892928 | Msa0138720:intron | 25.0% |
| ! | CATTAGTACTATACCAAAAA+TGG | - | chr1_3:71893053-71893072 | None:intergenic | 25.0% |
| !! | ACATTTGAAATTTAAGCACA+TGG | - | chr1_3:71893143-71893162 | None:intergenic | 25.0% |
| ! | TATTGGTAGACTTCTTAAAT+TGG | + | chr1_3:71893444-71893463 | Msa0138720:intron | 25.0% |
| ! | TACATTTATGGATGTTTAGA+AGG | + | chr1_3:71893507-71893526 | Msa0138720:intron | 25.0% |
| !! | AGTCAAGACTTCTTTTAAAT+AGG | + | chr1_3:71893589-71893608 | Msa0138720:intron | 25.0% |
| ! | GTAAACATCAATAATTCATG+TGG | - | chr1_3:71894288-71894307 | None:intergenic | 25.0% |
| ! | TTGGTTAATCTATAACTCAA+CGG | + | chr1_3:71894428-71894447 | Msa0138720:intron | 25.0% |
| ! | TTAGTGAATGTTTGTGATAT+TGG | + | chr1_3:71894670-71894689 | Msa0138720:intron | 25.0% |
| ! | TAGTGAATGTTTGTGATATT+GGG | + | chr1_3:71894671-71894690 | Msa0138720:intron | 25.0% |
| ! | TATTGCCTCATTCTATATTT+AGG | + | chr1_3:71894893-71894912 | Msa0138720:intron | 25.0% |
| ! | ATTCTCCTAAATATAGAATG+AGG | - | chr1_3:71894901-71894920 | None:intergenic | 25.0% |
| !!! | TTTTTTACCATGAAGTTAAC+TGG | + | chr1_3:71894957-71894976 | Msa0138720:intron | 25.0% |
| ! | ATAATTCACTGAAAACTTAC+TGG | - | chr1_3:71895132-71895151 | None:intergenic | 25.0% |
| !! | TTTTCTGTATATTGTTTCAC+AGG | + | chr1_3:71895201-71895220 | Msa0138720:intron | 25.0% |
| ! | TTCATGATGTACCAAATATT+TGG | + | chr1_3:71895242-71895261 | Msa0138720:CDS | 25.0% |
| ! | TAAAAATAGCCAAGATACAA+TGG | - | chr1_3:71895314-71895333 | None:intergenic | 25.0% |
| ! | CAACAATATTGTAATAAGAG+AGG | - | chr1_3:71895519-71895538 | None:intergenic | 25.0% |
| !!! | TTTTTTCATCAATTAAGGCA+AGG | - | chr1_3:71895570-71895589 | None:intergenic | 25.0% |
| !!! | CATTTTGAAATTTACAGGTT+AGG | + | chr1_3:71896197-71896216 | Msa0138720:intron | 25.0% |
| ! | CAGGATATCAATATATGTTA+TGG | + | chr1_3:71896316-71896335 | Msa0138720:intron | 25.0% |
| ! | TTAAAACTGCTATCACTTAT+TGG | + | chr1_3:71896499-71896518 | Msa0138720:intron | 25.0% |
| ! | AAGTTTAGTCTATTCTATCT+AGG | + | chr1_3:71896960-71896979 | Msa0138720:intron | 25.0% |
| ! | ATCACATAACTAAAATCTGA+AGG | - | chr1_3:71896999-71897018 | None:intergenic | 25.0% |
| ! | TCATAGATATTAAAGCAATG+GGG | - | chr1_3:71897074-71897093 | None:intergenic | 25.0% |
| ! | GATCATAGATATTAAAGCAA+TGG | - | chr1_3:71897076-71897095 | None:intergenic | 25.0% |
| ! | GGATTTCTTAGAATTTAGAT+CGG | + | chr1_3:71897124-71897143 | Msa0138720:intron | 25.0% |
| ! | GATTTCTTAGAATTTAGATC+GGG | + | chr1_3:71897125-71897144 | Msa0138720:intron | 25.0% |
| !!! | TGTTTACAAGTCAGTTTTTT+AGG | - | chr1_3:71897161-71897180 | None:intergenic | 25.0% |
| ! | TTTGTACTGTATTAATCATG+TGG | - | chr1_3:71897403-71897422 | None:intergenic | 25.0% |
| ! | CTGTAATGACAATATTTGTT+TGG | + | chr1_3:71897445-71897464 | Msa0138720:intron | 25.0% |
| ! | GTAATGACAATATTTGTTTG+GGG | + | chr1_3:71897447-71897466 | Msa0138720:intron | 25.0% |
| ! | ATGAAAATTACAACAGGATT+TGG | - | chr1_3:71897771-71897790 | None:intergenic | 25.0% |
| ! | AAACACACCAATAGTTATTA+GGG | - | chr1_3:71898348-71898367 | None:intergenic | 25.0% |
| ! | GTGTATACAACATTAATTAG+AGG | + | chr1_3:71898398-71898417 | Msa0138720:intron | 25.0% |
| ! | TATTGCATTTCAAATGTGAT+TGG | + | chr1_3:71898517-71898536 | Msa0138720:intron | 25.0% |
| ! | ATTGCATTTCAAATGTGATT+GGG | + | chr1_3:71898518-71898537 | Msa0138720:intron | 25.0% |
| ! | ATAAAAAAATTCCACAACAC+AGG | - | chr1_3:71899014-71899033 | None:intergenic | 25.0% |
| ! | ATCAATTGAAGAATATATGG+AGG | - | chr1_3:71899056-71899075 | None:intergenic | 25.0% |
| ! | GTTGTATTATACTGTTTAGT+TGG | + | chr1_3:71899089-71899108 | Msa0138720:intron | 25.0% |
| ! | AACAGATGAAGATATTAACA+TGG | - | chr1_3:71899164-71899183 | None:intergenic | 25.0% |
| !!! | TAACCTTTGTTTTTAGTTAC+TGG | + | chr1_3:71899255-71899274 | Msa0138720:intron | 25.0% |
| !!! | ATTTAGTATTGACATTGTTC+AGG | + | chr1_3:71899312-71899331 | Msa0138720:intron | 25.0% |
| !! | TCTAAAGTTTCAATAACATC+CGG | - | chr1_3:71899343-71899362 | None:intergenic | 25.0% |
| ! | TTATAAGCATCAATTCACAT+GGG | - | chr1_3:71899906-71899925 | None:intergenic | 25.0% |
| ! | ATTATAAGCATCAATTCACA+TGG | - | chr1_3:71899907-71899926 | None:intergenic | 25.0% |
| ! | GAGTAGAAATAATTGAAACA+GGG | - | chr1_3:71900000-71900019 | None:intergenic | 25.0% |
| !! | AAGGTAAATTGATTCTCTTT+AGG | + | chr1_3:71900166-71900185 | Msa0138720:intron | 25.0% |
| !! | AGGTAAATTGATTCTCTTTA+GGG | + | chr1_3:71900167-71900186 | Msa0138720:intron | 25.0% |
| !! | TTCTCTTTAGGGAAAATAAT+TGG | + | chr1_3:71900178-71900197 | Msa0138720:intron | 25.0% |
| !! | TCTCTTTAGGGAAAATAATT+GGG | + | chr1_3:71900179-71900198 | Msa0138720:intron | 25.0% |
| ! | ATTATAAATCTCAGAACTTC+TGG | - | chr1_3:71900363-71900382 | None:intergenic | 25.0% |
| ! | TTAGTAATAGAGATGCTAAA+AGG | + | chr1_3:71900401-71900420 | Msa0138720:intron | 25.0% |
| !! | ACTGGTATTGAAAACAATTA+CGG | + | chr1_3:71900432-71900451 | Msa0138720:intron | 25.0% |
| !!! | AAATTAACTTGCTTATAGTG+TGG | - | chr1_3:71900727-71900746 | None:intergenic | 25.0% |
| !!! | TACTTCATATTTTTGGGTTG+GGG | - | chr1_3:71891624-71891643 | None:intergenic | 30.0% |
| !!! | GTACTTCATATTTTTGGGTT+GGG | - | chr1_3:71891625-71891644 | None:intergenic | 30.0% |
| ! | GAGAACGTACTTCATATTTT+TGG | - | chr1_3:71891631-71891650 | None:intergenic | 30.0% |
| AAAACTTCTCCATGTTCAAA+AGG | - | chr1_3:71891878-71891897 | None:intergenic | 30.0% | |
| ! | GAAGTTTTTGTTCTTGATGA+TGG | + | chr1_3:71891890-71891909 | Msa0138720:CDS | 30.0% |
| ACTTCGTACAAGTGTATTTA+TGG | - | chr1_3:71891943-71891962 | None:intergenic | 30.0% | |
| TCTTGATGTTACACTTACAA+AGG | + | chr1_3:71892075-71892094 | Msa0138720:CDS | 30.0% | |
| TACTACTGGGAAAATATATC+AGG | + | chr1_3:71892108-71892127 | Msa0138720:CDS | 30.0% | |
| GTTAACTGATTGCTGAATAA+TGG | + | chr1_3:71892313-71892332 | Msa0138720:intron | 30.0% | |
| ! | GTTGGGATTTTTGATGAAAT+AGG | + | chr1_3:71892374-71892393 | Msa0138720:intron | 30.0% |
| TTATGCTCTTTCATAATCGA+TGG | - | chr1_3:71892576-71892595 | None:intergenic | 30.0% | |
| AGTAGTTAAAACGTGTACAT+GGG | - | chr1_3:71892734-71892753 | None:intergenic | 30.0% | |
| TAGTAGTTAAAACGTGTACA+TGG | - | chr1_3:71892735-71892754 | None:intergenic | 30.0% | |
| !!! | TACACGTTTTAACTACTACA+TGG | + | chr1_3:71892737-71892756 | Msa0138720:intron | 30.0% |
| AAGTTATTGACCAATACATC+TGG | + | chr1_3:71893223-71893242 | Msa0138720:intron | 30.0% | |
| AGTTATTGACCAATACATCT+GGG | + | chr1_3:71893224-71893243 | Msa0138720:intron | 30.0% | |
| GAAATAAAATGCACCCAAAA+AGG | + | chr1_3:71893318-71893337 | Msa0138720:intron | 30.0% | |
| !!! | TAAAAGCATCAAGCCTTTTT+GGG | - | chr1_3:71893334-71893353 | None:intergenic | 30.0% |
| !!! | ATAAAAGCATCAAGCCTTTT+TGG | - | chr1_3:71893335-71893354 | None:intergenic | 30.0% |
| ! | TTTTCTCTCCTTTAGTGTAT+CGG | - | chr1_3:71893400-71893419 | None:intergenic | 30.0% |
| AAATTGGTAGAACTATCTCT+TGG | + | chr1_3:71893460-71893479 | Msa0138720:intron | 30.0% | |
| !! | TTGATATTATGGCATTGGTT+TGG | + | chr1_3:71893628-71893647 | Msa0138720:intron | 30.0% |
| !! | TGATATTATGGCATTGGTTT+GGG | + | chr1_3:71893629-71893648 | Msa0138720:intron | 30.0% |
| TGGTTAATCTATAACTCAAC+GGG | + | chr1_3:71894429-71894448 | Msa0138720:intron | 30.0% | |
| ! | GAGGCAATAATCCTTTAAAA+AGG | - | chr1_3:71894882-71894901 | None:intergenic | 30.0% |
| CTATATTTAGGAGAATACAG+TGG | + | chr1_3:71894905-71894924 | Msa0138720:intron | 30.0% | |
| ATAATCTCCAGTTAACTTCA+TGG | - | chr1_3:71894967-71894986 | None:intergenic | 30.0% | |
| ! | TGATGTTAGTTTCACTATCT+CGG | + | chr1_3:71895029-71895048 | Msa0138720:intron | 30.0% |
| ! | AAACTGTGAAAGTTTTTCCT+TGG | - | chr1_3:71895100-71895119 | None:intergenic | 30.0% |
| ! | AGTTTTCAGTGAATTATGCT+TGG | + | chr1_3:71895135-71895154 | Msa0138720:intron | 30.0% |
| !! | TTTTTAGTGCCATTGTATCT+TGG | + | chr1_3:71895302-71895321 | Msa0138720:intron | 30.0% |
| ! | ATTGTTTTCCTCTTAATGTC+CGG | + | chr1_3:71895343-71895362 | Msa0138720:intron | 30.0% |
| ! | TTGATTCTGAAAATAGAAGC+CGG | - | chr1_3:71895365-71895384 | None:intergenic | 30.0% |
| !! | AGATAAACTCAAGTTGACAA+CGG | - | chr1_3:71895692-71895711 | None:intergenic | 30.0% |
| CATATGTTGGAATCTCTTAA+TGG | + | chr1_3:71895866-71895885 | Msa0138720:intron | 30.0% | |
| AATTGAAACACGTCATATGT+TGG | + | chr1_3:71895917-71895936 | Msa0138720:intron | 30.0% | |
| !!! | CAGAGCATTTTGAAATTTAC+AGG | + | chr1_3:71896192-71896211 | Msa0138720:intron | 30.0% |
| GTTCTTGGGATAAATATCAA+GGG | - | chr1_3:71896294-71896313 | None:intergenic | 30.0% | |
| TGTTCTTGGGATAAATATCA+AGG | - | chr1_3:71896295-71896314 | None:intergenic | 30.0% | |
| ! | TGAATATGGCATCAAACTTT+TGG | - | chr1_3:71896442-71896461 | None:intergenic | 30.0% |
| CAGATTATTGCTAGTGAATA+TGG | - | chr1_3:71896456-71896475 | None:intergenic | 30.0% | |
| !! | ATCTGATTTTGACATCTTTG+CGG | + | chr1_3:71896471-71896490 | Msa0138720:intron | 30.0% |
| ! | CTAGAAGCACATACAATTTA+TGG | + | chr1_3:71896937-71896956 | Msa0138720:intron | 30.0% |
| TCTATTCTATCTAGGAAGTT+TGG | + | chr1_3:71896968-71896987 | Msa0138720:intron | 30.0% | |
| TGGACTTTCTGTGATAAAAT+TGG | + | chr1_3:71897103-71897122 | Msa0138720:intron | 30.0% | |
| ! | TATCTAGAGTGTGATCTTAT+TGG | + | chr1_3:71897252-71897271 | Msa0138720:intron | 30.0% |
| ! | TGATCTTATTGGCCTAATAA+TGG | + | chr1_3:71897263-71897282 | Msa0138720:intron | 30.0% |
| ! | GATCTTATTGGCCTAATAAT+GGG | + | chr1_3:71897264-71897283 | Msa0138720:intron | 30.0% |
| GTAAATACTACTATCCAATG+TGG | + | chr1_3:71897371-71897390 | Msa0138720:intron | 30.0% | |
| CACAACAAGGATAATGATTA+GGG | - | chr1_3:71897834-71897853 | None:intergenic | 30.0% | |
| TCACAACAAGGATAATGATT+AGG | - | chr1_3:71897835-71897854 | None:intergenic | 30.0% | |
| AATATGGCTTATCTGTGAAA+GGG | - | chr1_3:71898039-71898058 | None:intergenic | 30.0% | |
| AAATATGGCTTATCTGTGAA+AGG | - | chr1_3:71898040-71898059 | None:intergenic | 30.0% | |
| TATCTGATGGGAAAGAAATA+TGG | - | chr1_3:71898055-71898074 | None:intergenic | 30.0% | |
| ! | AAATCTCAGTTTTCTTGTTC+TGG | + | chr1_3:71898111-71898130 | Msa0138720:intron | 30.0% |
| ! | AATCTCAGTTTTCTTGTTCT+GGG | + | chr1_3:71898112-71898131 | Msa0138720:intron | 30.0% |
| TACATAAAATGATTCCCTGA+TGG | - | chr1_3:71898190-71898209 | None:intergenic | 30.0% | |
| ATCACAGAACATAATGAATC+AGG | - | chr1_3:71898226-71898245 | None:intergenic | 30.0% | |
| TTAGGGGTAGTTTAGTAAAA+GGG | - | chr1_3:71898331-71898350 | None:intergenic | 30.0% | |
| ATTAGGGGTAGTTTAGTAAA+AGG | - | chr1_3:71898332-71898351 | None:intergenic | 30.0% | |
| AAACTACCCCTAATAACTAT+TGG | + | chr1_3:71898338-71898357 | Msa0138720:intron | 30.0% | |
| AACACACCAATAGTTATTAG+GGG | - | chr1_3:71898347-71898366 | None:intergenic | 30.0% | |
| GAAACACACCAATAGTTATT+AGG | - | chr1_3:71898349-71898368 | None:intergenic | 30.0% | |
| !!! | CTGAGACACTTATTTTGAAA+CGG | + | chr1_3:71898488-71898507 | Msa0138720:intron | 30.0% |
| ATTCTTCCTTACTGTAGATA+AGG | + | chr1_3:71898552-71898571 | Msa0138720:intron | 30.0% | |
| TTCTTCCTTACTGTAGATAA+GGG | + | chr1_3:71898553-71898572 | Msa0138720:intron | 30.0% | |
| !!! | TTCTTTTTTCACCTTTTGCT+AGG | - | chr1_3:71898658-71898677 | None:intergenic | 30.0% |
| GAGGTAGTAGTAAATTCTTT+AGG | - | chr1_3:71898720-71898739 | None:intergenic | 30.0% | |
| ! | AAGTAATTTTCTCTCCTGAA+GGG | - | chr1_3:71898825-71898844 | None:intergenic | 30.0% |
| ! | TAAGTAATTTTCTCTCCTGA+AGG | - | chr1_3:71898826-71898845 | None:intergenic | 30.0% |
| GAGTATTTATTACAGATTGC+AGG | + | chr1_3:71898858-71898877 | Msa0138720:intron | 30.0% | |
| GATGTCGTTGAAAATTTGAA+TGG | + | chr1_3:71898925-71898944 | Msa0138720:intron | 30.0% | |
| ! | TTGAATGGAGTCTTATAAGA+AGG | + | chr1_3:71898940-71898959 | Msa0138720:intron | 30.0% |
| ! | TGAATGGAGTCTTATAAGAA+GGG | + | chr1_3:71898941-71898960 | Msa0138720:intron | 30.0% |
| ! | AAGAAGGGGAAATGATATTT+TGG | + | chr1_3:71898956-71898975 | Msa0138720:intron | 30.0% |
| !!! | GAAATGATATTTTGGAACTG+AGG | + | chr1_3:71898964-71898983 | Msa0138720:intron | 30.0% |
| TATAATGAAAACCTGTGTTG+TGG | + | chr1_3:71899000-71899019 | Msa0138720:intron | 30.0% | |
| CAGTATAATACAACACACAA+AGG | - | chr1_3:71899083-71899102 | None:intergenic | 30.0% | |
| CATCCAGTAACTAAAAACAA+AGG | - | chr1_3:71899261-71899280 | None:intergenic | 30.0% | |
| ! | ATTGAAACTTTAGAAGAAGC+TGG | + | chr1_3:71899349-71899368 | Msa0138720:CDS | 30.0% |
| ! | TTGAAACTTTAGAAGAAGCT+GGG | + | chr1_3:71899350-71899369 | Msa0138720:CDS | 30.0% |
| ! | TATATTTTCCTGCTTGGATA+GGG | + | chr1_3:71899416-71899435 | Msa0138720:intron | 30.0% |
| ! | GGTACTTTTCAGTTATGAAT+TGG | + | chr1_3:71899705-71899724 | Msa0138720:intron | 30.0% |
| ATTAACACAGATGGTGTAAA+CGG | - | chr1_3:71899776-71899795 | None:intergenic | 30.0% | |
| TTAATACTGTGAGATGAAGA+TGG | + | chr1_3:71899791-71899810 | Msa0138720:intron | 30.0% | |
| ATCAATTCACATGGGAATTT+CGG | - | chr1_3:71899898-71899917 | None:intergenic | 30.0% | |
| CGAGTAGAAATAATTGAAAC+AGG | - | chr1_3:71900001-71900020 | None:intergenic | 30.0% | |
| GATCTACGATTCTTTACTAT+AGG | + | chr1_3:71900120-71900139 | Msa0138720:exon | 30.0% | |
| AAGCTATACAACTAAGGAAA+AGG | - | chr1_3:71900559-71900578 | None:intergenic | 30.0% | |
| ! | TAAATCAGAAGGCATGATAT+TGG | - | chr1_3:71900597-71900616 | None:intergenic | 30.0% |
| TGATTGTTTGATGTGTATAG+AGG | + | chr1_3:71900672-71900691 | Msa0138720:three_prime_UTR | 30.0% | |
| TTAGCGAGCATAAAAAGAAA+AGG | - | chr1_3:71900858-71900877 | None:intergenic | 30.0% | |
| ! | TCTTTTTATGCTCGCTAATT+AGG | + | chr1_3:71900860-71900879 | Msa0138720:three_prime_UTR | 30.0% |
| TACTTAGTCACTCATTATGA+AGG | + | chr1_3:71900962-71900981 | Msa0138720:three_prime_UTR | 30.0% | |
| TGTTTGTGTTTATATCCGAG+CGG | - | chr1_3:71891575-71891594 | None:intergenic | 35.0% | |
| GGAATGAATGAATGAGTTGT+AGG | - | chr1_3:71891603-71891622 | None:intergenic | 35.0% | |
| !!! | CGTACTTCATATTTTTGGGT+TGG | - | chr1_3:71891626-71891645 | None:intergenic | 35.0% |
| !!! | GTTTTTGTTCTTGATGATGG+CGG | + | chr1_3:71891893-71891912 | Msa0138720:CDS | 35.0% |
| TTATCTCGGAAAAACTGTTC+AGG | + | chr1_3:71892254-71892273 | Msa0138720:CDS | 35.0% | |
| AGATGAAGTTTCTGAGTTGT+TGG | + | chr1_3:71892356-71892375 | Msa0138720:intron | 35.0% | |
| GATGAAGTTTCTGAGTTGTT+GGG | + | chr1_3:71892357-71892376 | Msa0138720:intron | 35.0% | |
| ! | GGGATTTTTGATGAAATAGG+TGG | + | chr1_3:71892377-71892396 | Msa0138720:intron | 35.0% |
| AATCCAGTTTCTGATTGCAT+CGG | - | chr1_3:71892415-71892434 | None:intergenic | 35.0% | |
| AATCAGAAACTGGATTGAGT+CGG | + | chr1_3:71892419-71892438 | Msa0138720:CDS | 35.0% | |
| GTAGTTAAAACGTGTACATG+GGG | - | chr1_3:71892733-71892752 | None:intergenic | 35.0% | |
| AAGTCATATCCCAGATGTAT+TGG | - | chr1_3:71893236-71893255 | None:intergenic | 35.0% | |
| GGATATGACTTTGATACTTC+AGG | + | chr1_3:71893245-71893264 | Msa0138720:intron | 35.0% | |
| GATACTTCAGGATACACTAT+TGG | + | chr1_3:71893257-71893276 | Msa0138720:intron | 35.0% | |
| AAAGATGACCGATACACTAA+AGG | + | chr1_3:71893389-71893408 | Msa0138720:intron | 35.0% | |
| GATACACTAAAGGAGAGAAA+AGG | + | chr1_3:71893399-71893418 | Msa0138720:intron | 35.0% | |
| TTTATGGATGTTTAGAAGGC+TGG | + | chr1_3:71893511-71893530 | Msa0138720:intron | 35.0% | |
| ! | TACGATCACTAGTTTCTCTT+TGG | + | chr1_3:71893727-71893746 | Msa0138720:intron | 35.0% |
| TACTCTCATTATTCCTTCTC+AGG | + | chr1_3:71893881-71893900 | Msa0138720:intron | 35.0% | |
| ACTCTCATTATTCCTTCTCA+GGG | + | chr1_3:71893882-71893901 | Msa0138720:intron | 35.0% | |
| AGGTATATTATTGCACCAGT+TGG | + | chr1_3:71894132-71894151 | Msa0138720:intron | 35.0% | |
| GTACTACAACCTAAAGACTT+TGG | - | chr1_3:71894200-71894219 | None:intergenic | 35.0% | |
| TTACCACAGTTACGAAATTC+AGG | + | chr1_3:71894304-71894323 | Msa0138720:intron | 35.0% | |
| !! | CTTTAAAGTCGCATAGACTT+GGG | - | chr1_3:71894408-71894427 | None:intergenic | 35.0% |
| !! | ACTTTAAAGTCGCATAGACT+TGG | - | chr1_3:71894409-71894428 | None:intergenic | 35.0% |
| !! | AGTCTATGCGACTTTAAAGT+TGG | + | chr1_3:71894409-71894428 | Msa0138720:intron | 35.0% |
| !!! | GTTCACTGCAGTGTTTTAAT+AGG | - | chr1_3:71894609-71894628 | None:intergenic | 35.0% |
| ACTGCAGTGAACTTTAGTAA+GGG | + | chr1_3:71894617-71894636 | Msa0138720:intron | 35.0% | |
| ACTTTAGTAAGGGTAATGCT+AGG | + | chr1_3:71894627-71894646 | Msa0138720:intron | 35.0% | |
| ACCAAGAAACCAAATTTCCT+CGG | - | chr1_3:71894702-71894721 | None:intergenic | 35.0% | |
| ATTGTGGTTGTTAAGACCAA+AGG | + | chr1_3:71894736-71894755 | Msa0138720:intron | 35.0% | |
| TTGTGGTTGTTAAGACCAAA+GGG | + | chr1_3:71894737-71894756 | Msa0138720:intron | 35.0% | |
| AAGCTACTTATGTGCTTATG+TGG | + | chr1_3:71894783-71894802 | Msa0138720:intron | 35.0% | |
| TTTGACAACTTATGTGACAC+TGG | + | chr1_3:71894807-71894826 | Msa0138720:intron | 35.0% | |
| TTGCTTCTCCAATGAGATTA+TGG | + | chr1_3:71894838-71894857 | Msa0138720:intron | 35.0% | |
| TTGTCAGACCATAATCTCAT+TGG | - | chr1_3:71894849-71894868 | None:intergenic | 35.0% | |
| ! | ATCAAGCGACTCCTTTTTAA+AGG | + | chr1_3:71894868-71894887 | Msa0138720:intron | 35.0% |
| ACTGAAAACTTACTGGAACA+TGG | - | chr1_3:71895125-71895144 | None:intergenic | 35.0% | |
| AGGGGAATATGCCAAATATT+TGG | - | chr1_3:71895256-71895275 | None:intergenic | 35.0% | |
| TAAGCTGCTGTAAAATTGAG+TGG | - | chr1_3:71895396-71895415 | None:intergenic | 35.0% | |
| TACAGCAGCTTAACTTACTT+AGG | + | chr1_3:71895404-71895423 | Msa0138720:CDS | 35.0% | |
| !! | GATAAACTCAAGTTGACAAC+GGG | - | chr1_3:71895691-71895710 | None:intergenic | 35.0% |
| ! | TAGCATAAGCACAAGTCTTT+TGG | + | chr1_3:71895741-71895760 | Msa0138720:intron | 35.0% |
| !!! | AAGCACAAGTCTTTTGGTTT+TGG | + | chr1_3:71895747-71895766 | Msa0138720:intron | 35.0% |
| !!! | AGCACAAGTCTTTTGGTTTT+GGG | + | chr1_3:71895748-71895767 | Msa0138720:intron | 35.0% |
| GTCATATGTTGGTCATACTT+GGG | + | chr1_3:71895928-71895947 | Msa0138720:intron | 35.0% | |
| TAGTACTAACAGATTCAGTG+AGG | - | chr1_3:71896115-71896134 | None:intergenic | 35.0% | |
| ATATTTATCCCAAGAACAGC+AGG | + | chr1_3:71896297-71896316 | Msa0138720:intron | 35.0% | |
| ATTGATATCCTGCTGTTCTT+GGG | - | chr1_3:71896308-71896327 | None:intergenic | 35.0% | |
| TATTGATATCCTGCTGTTCT+TGG | - | chr1_3:71896309-71896328 | None:intergenic | 35.0% | |
| CTGCCGAATATCAACATATT+TGG | + | chr1_3:71896565-71896584 | Msa0138720:intron | 35.0% | |
| TTGGTTTCTTCTCATTATGC+AGG | + | chr1_3:71896822-71896841 | Msa0138720:intron | 35.0% | |
| AATATCTATGATCGAACAGC+TGG | + | chr1_3:71897083-71897102 | Msa0138720:intron | 35.0% | |
| TAGATAGCCAGTAACGTAAA+GGG | - | chr1_3:71897238-71897257 | None:intergenic | 35.0% | |
| ATTGTTCTCTCTGGCATATT+TGG | - | chr1_3:71897555-71897574 | None:intergenic | 35.0% | |
| AGAGAACAATGTTCCTTACT+TGG | + | chr1_3:71897565-71897584 | Msa0138720:CDS | 35.0% | |
| GAGAACAATGTTCCTTACTT+GGG | + | chr1_3:71897566-71897585 | Msa0138720:CDS | 35.0% | |
| AGAACAATGTTCCTTACTTG+GGG | + | chr1_3:71897567-71897586 | Msa0138720:CDS | 35.0% | |
| !! | TACAACAGGATTTGGTGTTT+GGG | - | chr1_3:71897763-71897782 | None:intergenic | 35.0% |
| !! | TTACAACAGGATTTGGTGTT+TGG | - | chr1_3:71897764-71897783 | None:intergenic | 35.0% |
| TCTGGCATGAAAATTACAAC+AGG | - | chr1_3:71897777-71897796 | None:intergenic | 35.0% | |
| ! | TGTTGTAATTTTCATGCCAG+AGG | + | chr1_3:71897776-71897795 | Msa0138720:CDS | 35.0% |
| GATAATGATTAGGGAAACTG+GGG | - | chr1_3:71897825-71897844 | None:intergenic | 35.0% | |
| GGATAATGATTAGGGAAACT+GGG | - | chr1_3:71897826-71897845 | None:intergenic | 35.0% | |
| AGGATAATGATTAGGGAAAC+TGG | - | chr1_3:71897827-71897846 | None:intergenic | 35.0% | |
| TAGCTACATCACATACAGTT+TGG | - | chr1_3:71897957-71897976 | None:intergenic | 35.0% | |
| CTGAATGACACATGTCAATA+AGG | + | chr1_3:71898149-71898168 | Msa0138720:intron | 35.0% | |
| ATGTGTGCAGAAACCTTAAA+CGG | - | chr1_3:71898273-71898292 | None:intergenic | 35.0% | |
| TCTTCCTTACTGTAGATAAG+GGG | + | chr1_3:71898554-71898573 | Msa0138720:intron | 35.0% | |
| ! | TTTTCACCTTTTGCTAGGAA+GGG | - | chr1_3:71898653-71898672 | None:intergenic | 35.0% |
| ! | TTTTTCACCTTTTGCTAGGA+AGG | - | chr1_3:71898654-71898673 | None:intergenic | 35.0% |
| ! | GGTCTTATATTTAGAGACAG+AGG | - | chr1_3:71898739-71898758 | None:intergenic | 35.0% |
| ATCTCTTGATTTACTCGATG+TGG | - | chr1_3:71898760-71898779 | None:intergenic | 35.0% | |
| ! | GAATGGAGTCTTATAAGAAG+GGG | + | chr1_3:71898942-71898961 | Msa0138720:intron | 35.0% |
| ! | TTTGGAACTGAGGTAGTATA+TGG | + | chr1_3:71898974-71898993 | Msa0138720:intron | 35.0% |
| TTCATCTGTTCCTAATTACC+AGG | + | chr1_3:71899174-71899193 | Msa0138720:intron | 35.0% | |
| AATTGCCATACCTGGTAATT+AGG | - | chr1_3:71899187-71899206 | None:intergenic | 35.0% | |
| AATTACCAGGTATGGCAATT+CGG | + | chr1_3:71899187-71899206 | Msa0138720:intron | 35.0% | |
| TGACATTGTTCAGGTAAATC+CGG | + | chr1_3:71899321-71899340 | Msa0138720:intron | 35.0% | |
| ! | GTATATTTTCCTGCTTGGAT+AGG | + | chr1_3:71899415-71899434 | Msa0138720:intron | 35.0% |
| GCACAAGAGAGAATTTCTTA+AGG | - | chr1_3:71899590-71899609 | None:intergenic | 35.0% | |
| CCTACATAATATGGATGACT+TGG | - | chr1_3:71899627-71899646 | None:intergenic | 35.0% | |
| CCAAGTCATCCATATTATGT+AGG | + | chr1_3:71899624-71899643 | Msa0138720:CDS | 35.0% | |
| AATTGCACGCCTACATAATA+TGG | - | chr1_3:71899636-71899655 | None:intergenic | 35.0% | |
| TTCATCCCGAATTCAAATCT+CGG | + | chr1_3:71899655-71899674 | Msa0138720:CDS | 35.0% | |
| !!! | AGACCATCTGCTTTGTTTTT+AGG | + | chr1_3:71899684-71899703 | Msa0138720:CDS | 35.0% |
| GTACCTAAAAACAAAGCAGA+TGG | - | chr1_3:71899690-71899709 | None:intergenic | 35.0% | |
| TCTCACAGTATTAACACAGA+TGG | - | chr1_3:71899785-71899804 | None:intergenic | 35.0% | |
| CAATATGAGACCTACAGTAT+AGG | - | chr1_3:71900045-71900064 | None:intergenic | 35.0% | |
| CTATACTGTAGGTCTCATAT+TGG | + | chr1_3:71900043-71900062 | Msa0138720:intron | 35.0% | |
| ATCACTAGCATTCATGAGAA+TGG | + | chr1_3:71900092-71900111 | Msa0138720:CDS | 35.0% | |
| CTGATTCATATCAGTCACAA+AGG | + | chr1_3:71900303-71900322 | Msa0138720:intron | 35.0% | |
| ! | ACTTCTGGTGATGAAATACA+TGG | - | chr1_3:71900348-71900367 | None:intergenic | 35.0% |
| TGCTAAAAGGTTGCAAATAC+TGG | + | chr1_3:71900414-71900433 | Msa0138720:intron | 35.0% | |
| GTTGTAACTTTGTCAAGCTA+AGG | + | chr1_3:71900463-71900482 | Msa0138720:intron | 35.0% | |
| ! | AGTGCTGAATTTATCAGCTA+AGG | - | chr1_3:71900502-71900521 | None:intergenic | 35.0% |
| CTGATAAATTCAGCACTTCT+TGG | + | chr1_3:71900505-71900524 | Msa0138720:intron | 35.0% | |
| CCATACTATTTAGCTAACTG+TGG | - | chr1_3:71900531-71900550 | None:intergenic | 35.0% | |
| CCACAGTTAGCTAAATAGTA+TGG | + | chr1_3:71900528-71900547 | Msa0138720:intron | 35.0% | |
| ATACAACTAAGGAAAAGGTC+TGG | - | chr1_3:71900554-71900573 | None:intergenic | 35.0% | |
| !!! | TCTTTTTCGATCTTCATTGC+AGG | + | chr1_3:71900632-71900651 | Msa0138720:intron | 35.0% |
| !!! | AAGGTTGATATTTTGGTGGG+AGG | - | chr1_3:71891551-71891570 | None:intergenic | 40.0% |
| !!! | GGGAAGGTTGATATTTTGGT+GGG | - | chr1_3:71891554-71891573 | None:intergenic | 40.0% |
| AAAATATCAACCTTCCCGCT+CGG | + | chr1_3:71891557-71891576 | Msa0138720:five_prime_UTR | 40.0% | |
| GTTTGTGTTTATATCCGAGC+GGG | - | chr1_3:71891574-71891593 | None:intergenic | 40.0% | |
| ATGAAGTACGTTCTCATCTC+CGG | + | chr1_3:71891636-71891655 | Msa0138720:CDS | 40.0% | |
| !! | AGAGTGAGAACCGATTTTGA+TGG | - | chr1_3:71891745-71891764 | None:intergenic | 40.0% |
| AAACGGTGAATGATGCGAAA+CGG | - | chr1_3:71891796-71891815 | None:intergenic | 40.0% | |
| CCAGCGTCAATGTTCAAATA+CGG | - | chr1_3:71891845-71891864 | None:intergenic | 40.0% | |
| ! | ACCATGTCTCCTTTTGAACA+TGG | + | chr1_3:71891866-71891885 | Msa0138720:CDS | 40.0% |
| TCCATGTTCAAAAGGAGACA+TGG | - | chr1_3:71891870-71891889 | None:intergenic | 40.0% | |
| TTCTTAGTCTGTGCTTGAGA+AGG | + | chr1_3:71892218-71892237 | Msa0138720:intron | 40.0% | |
| CAATCACACAAACATCAGCA+GGG | - | chr1_3:71892476-71892495 | None:intergenic | 40.0% | |
| TCAATCACACAAACATCAGC+AGG | - | chr1_3:71892477-71892496 | None:intergenic | 40.0% | |
| GATGTTTGTGTGATTGAGCT+TGG | + | chr1_3:71892480-71892499 | Msa0138720:CDS | 40.0% | |
| ! | TGAGTCTATGCCGTTTATTG+AGG | + | chr1_3:71892625-71892644 | Msa0138720:CDS | 40.0% |
| ACGGCAATTATCCTTTCAAG+TGG | + | chr1_3:71892652-71892671 | Msa0138720:CDS | 40.0% | |
| ! | CGGCAATTATCCTTTCAAGT+GGG | + | chr1_3:71892653-71892672 | Msa0138720:CDS | 40.0% |
| CATTGTTCTCATGTGTGATG+AGG | + | chr1_3:71892778-71892797 | Msa0138720:intron | 40.0% | |
| CTCGCACTTACCTAAGTATT+TGG | - | chr1_3:71892960-71892979 | None:intergenic | 40.0% | |
| CTAAAGGAGAGAAAAGGTTG+CGG | + | chr1_3:71893405-71893424 | Msa0138720:intron | 40.0% | |
| TAAAGGAGAGAAAAGGTTGC+GGG | + | chr1_3:71893406-71893425 | Msa0138720:intron | 40.0% | |
| GGACATTCACTTGGTCATAT+TGG | + | chr1_3:71893427-71893446 | Msa0138720:intron | 40.0% | |
| ! | TAGAAGGCTGGTGATGAAAT+TGG | + | chr1_3:71893523-71893542 | Msa0138720:intron | 40.0% |
| CGAGACAAGATGACATTTCA+TGG | - | chr1_3:71893847-71893866 | None:intergenic | 40.0% | |
| ATGGTTGCTCCAAAGTCTTT+AGG | + | chr1_3:71894188-71894207 | Msa0138720:intron | 40.0% | |
| CACTGCAGTGAACTTTAGTA+AGG | + | chr1_3:71894616-71894635 | Msa0138720:intron | 40.0% | |
| TAGTAAGGGTAATGCTAGGA+TGG | + | chr1_3:71894631-71894650 | Msa0138720:intron | 40.0% | |
| AGTAAGGGTAATGCTAGGAT+GGG | + | chr1_3:71894632-71894651 | Msa0138720:intron | 40.0% | |
| GAAACCAAATTTCCTCGGTA+AGG | - | chr1_3:71894697-71894716 | None:intergenic | 40.0% | |
| ! | ACCGAGGAAATTTGGTTTCT+TGG | + | chr1_3:71894698-71894717 | Msa0138720:intron | 40.0% |
| TGTGGTTGTTAAGACCAAAG+GGG | + | chr1_3:71894738-71894757 | Msa0138720:intron | 40.0% | |
| AGACTCACTCTAAGTAACAG+GGG | - | chr1_3:71895274-71895293 | None:intergenic | 40.0% | |
| GAGACTCACTCTAAGTAACA+GGG | - | chr1_3:71895275-71895294 | None:intergenic | 40.0% | |
| AGAGACTCACTCTAAGTAAC+AGG | - | chr1_3:71895276-71895295 | None:intergenic | 40.0% | |
| AATAGAAGCCGGACATTAAG+AGG | - | chr1_3:71895354-71895373 | None:intergenic | 40.0% | |
| CTGCTGTAAAATTGAGTGGT+GGG | - | chr1_3:71895392-71895411 | None:intergenic | 40.0% | |
| TCAACGCACTCTTCATTGTT+GGG | - | chr1_3:71895605-71895624 | None:intergenic | 40.0% | |
| ATCAACGCACTCTTCATTGT+TGG | - | chr1_3:71895606-71895625 | None:intergenic | 40.0% | |
| !!! | GCACAAGTCTTTTGGTTTTG+GGG | + | chr1_3:71895749-71895768 | Msa0138720:intron | 40.0% |
| CGTCATATGTTGGTCATACT+TGG | + | chr1_3:71895927-71895946 | Msa0138720:intron | 40.0% | |
| TATGTTGGTCATACTTGGGA+AGG | + | chr1_3:71895932-71895951 | Msa0138720:intron | 40.0% | |
| TTTACAGGTTAGGATTGCCA+TGG | + | chr1_3:71896207-71896226 | Msa0138720:intron | 40.0% | |
| ! | ACCAACATATTTTCCCACCA+TGG | - | chr1_3:71896227-71896246 | None:intergenic | 40.0% |
| CATTGAGACCATCAATTGAC+TGG | + | chr1_3:71896726-71896745 | Msa0138720:CDS | 40.0% | |
| ATTGTGCACTGTCATCTTCA+AGG | - | chr1_3:71896766-71896785 | None:intergenic | 40.0% | |
| ! | TCTATCTAGGAAGTTTGGTG+AGG | + | chr1_3:71896973-71896992 | Msa0138720:intron | 40.0% |
| AAAAACCGTCTAGCACATAG+CGG | - | chr1_3:71897023-71897042 | None:intergenic | 40.0% | |
| CTAGATAGCCAGTAACGTAA+AGG | - | chr1_3:71897239-71897258 | None:intergenic | 40.0% | |
| ! | CTTATTGGCCTAATAATGGG+TGG | + | chr1_3:71897267-71897286 | Msa0138720:intron | 40.0% |
| CCATAAGACCACCCATTATT+AGG | - | chr1_3:71897278-71897297 | None:intergenic | 40.0% | |
| !! | CCTAATAATGGGTGGTCTTA+TGG | + | chr1_3:71897275-71897294 | Msa0138720:intron | 40.0% |
| CCAATATTGTGAGATTGAGC+AGG | - | chr1_3:71897348-71897367 | None:intergenic | 40.0% | |
| CCTGCTCAATCTCACAATAT+TGG | + | chr1_3:71897345-71897364 | Msa0138720:intron | 40.0% | |
| GTAAGGAACATTGTTCTCTC+TGG | - | chr1_3:71897564-71897583 | None:intergenic | 40.0% | |
| !!! | TCTATTCTTAGGTTTTGGGC+TGG | + | chr1_3:71897709-71897728 | Msa0138720:intron | 40.0% |
| !!! | CTATTCTTAGGTTTTGGGCT+GGG | + | chr1_3:71897710-71897729 | Msa0138720:intron | 40.0% |
| ATGCCTGCTAGTCATAAACA+GGG | + | chr1_3:71897854-71897873 | Msa0138720:intron | 40.0% | |
| CTAGTCATAAACAGGGTTCT+AGG | + | chr1_3:71897861-71897880 | Msa0138720:intron | 40.0% | |
| CACATGTCAATAAGGATGTC+TGG | + | chr1_3:71898157-71898176 | Msa0138720:intron | 40.0% | |
| !!! | AAACGGCACTCGTTTTGAAA+CGG | - | chr1_3:71898256-71898275 | None:intergenic | 40.0% |
| !! | TTCAAAACGAGTGCCGTTTA+AGG | + | chr1_3:71898257-71898276 | Msa0138720:intron | 40.0% |
| GAAACCCCTTATCTACAGTA+AGG | - | chr1_3:71898561-71898580 | None:intergenic | 40.0% | |
| ACTGTAGATAAGGGGTTTCA+AGG | + | chr1_3:71898562-71898581 | Msa0138720:intron | 40.0% | |
| CTGTAGATAAGGGGTTTCAA+GGG | + | chr1_3:71898563-71898582 | Msa0138720:intron | 40.0% | |
| TGTTGAGAAGTTTACCCTTC+AGG | + | chr1_3:71898808-71898827 | Msa0138720:intron | 40.0% | |
| CTGTTCCTAATTACCAGGTA+TGG | + | chr1_3:71899179-71899198 | Msa0138720:intron | 40.0% | |
| ATTCGGAGTATGTGGATGAA+CGG | + | chr1_3:71899204-71899223 | Msa0138720:CDS | 40.0% | |
| CAGGTACTACACATGTTTGT+AGG | - | chr1_3:71899285-71899304 | None:intergenic | 40.0% | |
| GAAGCTGGGCTAAAATTTGT+TGG | + | chr1_3:71899364-71899383 | Msa0138720:CDS | 40.0% | |
| !! | TGGGCTAAAATTTGTTGGCA+GGG | + | chr1_3:71899369-71899388 | Msa0138720:CDS | 40.0% |
| !! | TGGAGGTATATTTTCCTGCT+TGG | + | chr1_3:71899410-71899429 | Msa0138720:intron | 40.0% |
| TATCAAAACCCTATCCAAGC+AGG | - | chr1_3:71899427-71899446 | None:intergenic | 40.0% | |
| ! | CAGGTTTTCAACTACAGTTC+TGG | - | chr1_3:71899454-71899473 | None:intergenic | 40.0% |
| CAGAACTGTAGTTGAAAACC+TGG | + | chr1_3:71899452-71899471 | Msa0138720:intron | 40.0% | |
| AACTGTAGTTGAAAACCTGG+CGG | + | chr1_3:71899455-71899474 | Msa0138720:intron | 40.0% | |
| TGAGATGAAGATGGTCTGTT+TGG | + | chr1_3:71899800-71899819 | Msa0138720:intron | 40.0% | |
| GCAAGCAATAACATGACATC+AGG | - | chr1_3:71899858-71899877 | None:intergenic | 40.0% | |
| ATTCACATGGGAATTTCGGT+AGG | - | chr1_3:71899894-71899913 | None:intergenic | 40.0% | |
| AGGGAAAATAATTGGGAGCA+AGG | + | chr1_3:71900186-71900205 | Msa0138720:intron | 40.0% | |
| GGGAAAATAATTGGGAGCAA+GGG | + | chr1_3:71900187-71900206 | Msa0138720:intron | 40.0% | |
| AATAATTGGGAGCAAGGGAA+TGG | + | chr1_3:71900192-71900211 | Msa0138720:intron | 40.0% | |
| ATAATTGGGAGCAAGGGAAT+GGG | + | chr1_3:71900193-71900212 | Msa0138720:intron | 40.0% | |
| TAGGAACTAGGAACTGAAGT+AGG | + | chr1_3:71900219-71900238 | Msa0138720:intron | 40.0% | |
| GTAACTTTGTCAAGCTAAGG+AGG | + | chr1_3:71900466-71900485 | Msa0138720:intron | 40.0% | |
| CACAGCAAGCTATACAACTA+AGG | - | chr1_3:71900565-71900584 | None:intergenic | 40.0% | |
| !! | CTTAGTTGTATAGCTTGCTG+TGG | + | chr1_3:71900563-71900582 | Msa0138720:intron | 40.0% |
| ATGTGTATAGAGGTCTGAAG+CGG | + | chr1_3:71900682-71900701 | Msa0138720:three_prime_UTR | 40.0% | |
| TTTATAAGCCTGTGAGTGTC+AGG | - | chr1_3:71900772-71900791 | None:intergenic | 40.0% | |
| !!! | CGGGAAGGTTGATATTTTGG+TGG | - | chr1_3:71891555-71891574 | None:intergenic | 45.0% |
| !!! | GAGCGGGAAGGTTGATATTT+TGG | - | chr1_3:71891558-71891577 | None:intergenic | 45.0% |
| !! | GTGAGAACCGATTTTGATGG+AGG | - | chr1_3:71891742-71891761 | None:intergenic | 45.0% |
| CGGTTACGAAGAAGTTGAGT+TGG | - | chr1_3:71891776-71891795 | None:intergenic | 45.0% | |
| CCGTATTTGAACATTGACGC+TGG | + | chr1_3:71891842-71891861 | Msa0138720:CDS | 45.0% | |
| ! | CTGATTGCATCGGTGATATG+CGG | - | chr1_3:71892405-71892424 | None:intergenic | 45.0% |
| TCACCGATGCAATCAGAAAC+TGG | + | chr1_3:71892409-71892428 | Msa0138720:CDS | 45.0% | |
| GGTCTTCATTTCCATCAACC+GGG | - | chr1_3:71892455-71892474 | None:intergenic | 45.0% | |
| GGGTCTTCATTTCCATCAAC+CGG | - | chr1_3:71892456-71892475 | None:intergenic | 45.0% | |
| GTTTGTGTGATTGAGCTTGG+AGG | + | chr1_3:71892483-71892502 | Msa0138720:CDS | 45.0% | |
| ! | TGCCGTTTATTGAGGCTCTA+CGG | + | chr1_3:71892633-71892652 | Msa0138720:CDS | 45.0% |
| TGCCGTAGAGCCTCAATAAA+CGG | - | chr1_3:71892638-71892657 | None:intergenic | 45.0% | |
| TGCTGTCATACCCACTTGAA+AGG | - | chr1_3:71892666-71892685 | None:intergenic | 45.0% | |
| CTTTCCTCGACAACAGTCAA+AGG | - | chr1_3:71893373-71893392 | None:intergenic | 45.0% | |
| TGGATGAGACAGAAGTTGTC+AGG | - | chr1_3:71893908-71893927 | None:intergenic | 45.0% | |
| ACACTGGTATCAGGCTAACA+TGG | - | chr1_3:71893928-71893947 | None:intergenic | 45.0% | |
| ! | TGTTAGCCTGATACCAGTGT+TGG | + | chr1_3:71893928-71893947 | Msa0138720:CDS | 45.0% |
| ! | GTTAGCCTGATACCAGTGTT+GGG | + | chr1_3:71893929-71893948 | Msa0138720:CDS | 45.0% |
| ! | ATACCAGTGTTGGGTGTAGT+GGG | + | chr1_3:71893938-71893957 | Msa0138720:CDS | 45.0% |
| !!! | GTTGTGTCGGCTTTGTTTTC+TGG | - | chr1_3:71894049-71894068 | None:intergenic | 45.0% |
| ! | TGTCAGGGAACTAAGAGCAT+TGG | + | chr1_3:71894073-71894092 | Msa0138720:CDS | 45.0% |
| !! | GTCAGGGAACTAAGAGCATT+GGG | + | chr1_3:71894074-71894093 | Msa0138720:CDS | 45.0% |
| !! | GAGCGACTTGCTAAAAGATG+AGG | - | chr1_3:71894107-71894126 | None:intergenic | 45.0% |
| AAATGCATCTAGGCACCAAC+TGG | - | chr1_3:71894150-71894169 | None:intergenic | 45.0% | |
| GAGCCTGAATTTCGTAACTG+TGG | - | chr1_3:71894310-71894329 | None:intergenic | 45.0% | |
| GCTGCTGTAAAATTGAGTGG+TGG | - | chr1_3:71895393-71895412 | None:intergenic | 45.0% | |
| !! | TTTGCGGCAATGGACTGATA+TGG | + | chr1_3:71896073-71896092 | Msa0138720:CDS | 45.0% |
| ! | GCCATGGTGGGAAAATATGT+TGG | + | chr1_3:71896223-71896242 | Msa0138720:CDS | 45.0% |
| TGCAACACAAGCATGCAGTA+GGG | - | chr1_3:71896702-71896721 | None:intergenic | 45.0% | |
| GCTGCAATCCAGTCAATTGA+TGG | - | chr1_3:71896737-71896756 | None:intergenic | 45.0% | |
| TTCTCATTATGCAGGCAGTC+AGG | + | chr1_3:71896830-71896849 | Msa0138720:intron | 45.0% | |
| AAAACCGTCTAGCACATAGC+GGG | - | chr1_3:71897022-71897041 | None:intergenic | 45.0% | |
| ! | GCTATGTGCTAGACGGTTTT+TGG | + | chr1_3:71897022-71897041 | Msa0138720:intron | 45.0% |
| ACACACACCCTTTACGTTAC+TGG | + | chr1_3:71897228-71897247 | Msa0138720:intron | 45.0% | |
| TCATGTGGAGAGATCCACAT+TGG | - | chr1_3:71897388-71897407 | None:intergenic | 45.0% | |
| ! | TCCTTACTTGGGGATTTGCT+TGG | + | chr1_3:71897577-71897596 | Msa0138720:CDS | 45.0% |
| ! | CCTTACTTGGGGATTTGCTT+GGG | + | chr1_3:71897578-71897597 | Msa0138720:CDS | 45.0% |
| GAAACAAGTATGCGTACCTC+TGG | - | chr1_3:71897795-71897814 | None:intergenic | 45.0% | |
| AATGATTAGGGAAACTGGGG+AGG | - | chr1_3:71897822-71897841 | None:intergenic | 45.0% | |
| GATGCCTGCTAGTCATAAAC+AGG | + | chr1_3:71897853-71897872 | Msa0138720:intron | 45.0% | |
| GAACCCTGTTTATGACTAGC+AGG | - | chr1_3:71897860-71897879 | None:intergenic | 45.0% | |
| !! | ATGGGAAGTACCATGAGACT+TGG | + | chr1_3:71897890-71897909 | Msa0138720:CDS | 45.0% |
| TCTTCGAGATCCAAGTCTCA+TGG | - | chr1_3:71897903-71897922 | None:intergenic | 45.0% | |
| GTCATTCAGAACAACCAGAC+AGG | - | chr1_3:71898138-71898157 | None:intergenic | 45.0% | |
| AGATAAGGGGTTTCAAGGGA+AGG | + | chr1_3:71898567-71898586 | Msa0138720:intron | 45.0% | |
| GATAAGGGGTTTCAAGGGAA+GGG | + | chr1_3:71898568-71898587 | Msa0138720:intron | 45.0% | |
| GGTTTCAAGGGAAGGGAAAT+GGG | + | chr1_3:71898575-71898594 | Msa0138720:intron | 45.0% | |
| GAAGGGAAATGGGAAAGGTT+TGG | + | chr1_3:71898585-71898604 | Msa0138720:intron | 45.0% | |
| ! | ACCTTTTGCTAGGAAGGGAA+GGG | - | chr1_3:71898648-71898667 | None:intergenic | 45.0% |
| ATACTCCGAATTGCCATACC+TGG | - | chr1_3:71899195-71899214 | None:intergenic | 45.0% | |
| GTATGGCAATTCGGAGTATG+TGG | + | chr1_3:71899196-71899215 | Msa0138720:CDS | 45.0% | |
| !! | CTGGGCTAAAATTTGTTGGC+AGG | + | chr1_3:71899368-71899387 | Msa0138720:CDS | 45.0% |
| TTTGTTGGCAGGGATGAAAG+CGG | + | chr1_3:71899379-71899398 | Msa0138720:CDS | 45.0% | |
| CATGTCTAATTGAAACCGCC+AGG | - | chr1_3:71899473-71899492 | None:intergenic | 45.0% | |
| CTGGCGGTTTCAATTAGACA+TGG | + | chr1_3:71899471-71899490 | Msa0138720:intron | 45.0% | |
| !! | CAACAACAAGAGTGCTGTGA+AGG | - | chr1_3:71899827-71899846 | None:intergenic | 45.0% |
| TGATGCTGCACCTATACTGT+AGG | + | chr1_3:71900032-71900051 | Msa0138720:intron | 45.0% | |
| AGGTCTCATATTGGCAGCAA+CGG | + | chr1_3:71900052-71900071 | Msa0138720:intron | 45.0% | |
| GAACTAGGAACTGAAGTAGG+AGG | + | chr1_3:71900222-71900241 | Msa0138720:intron | 45.0% | |
| AGGAACTGAAGTAGGAGGAA+TGG | + | chr1_3:71900227-71900246 | Msa0138720:intron | 45.0% | |
| GGAACTGAAGTAGGAGGAAT+GGG | + | chr1_3:71900228-71900247 | Msa0138720:intron | 45.0% | |
| ! | ATCCAACCTAGAGAAGCATG+GGG | - | chr1_3:71900283-71900302 | None:intergenic | 45.0% |
| ! | GATCCAACCTAGAGAAGCAT+GGG | - | chr1_3:71900284-71900303 | None:intergenic | 45.0% |
| AGATCCAACCTAGAGAAGCA+TGG | - | chr1_3:71900285-71900304 | None:intergenic | 45.0% | |
| ACCATTAACCTGACACTCAC+AGG | + | chr1_3:71900761-71900780 | Msa0138720:three_prime_UTR | 45.0% | |
| !!! | AAAATAATTTCTAAAAAAAT+AGG | - | chr1_3:71893198-71893217 | None:intergenic | 5.0% |
| !!! | TATATTTTTCAATAAAAATA+TGG | - | chr1_3:71895987-71896006 | None:intergenic | 5.0% |
| !! | TTGAAAAATATATTAATAAT+TGG | + | chr1_3:71895995-71896014 | Msa0138720:intron | 5.0% |
| !!! | TTTCTAAAAAAATTAAAAAA+AGG | + | chr1_3:71896603-71896622 | Msa0138720:intron | 5.0% |
| !!! | TTCTAAAAAAATTAAAAAAA+GGG | + | chr1_3:71896604-71896623 | Msa0138720:intron | 5.0% |
| GTGTTTATATCCGAGCGGGA+AGG | - | chr1_3:71891570-71891589 | None:intergenic | 50.0% | |
| AAGTACGTTCTCATCTCCGG+CGG | + | chr1_3:71891639-71891658 | Msa0138720:CDS | 50.0% | |
| !! | CGATTTTGATGGAGGTGACG+CGG | - | chr1_3:71891734-71891753 | None:intergenic | 50.0% |
| CGCGTCACCTCCATCAAAAT+CGG | + | chr1_3:71891732-71891751 | Msa0138720:CDS | 50.0% | |
| !! | TGTTCTTGATGATGGCGGAG+AGG | + | chr1_3:71891898-71891917 | Msa0138720:CDS | 50.0% |
| GAGCGCAAGGGAGATTATCT+CGG | + | chr1_3:71892240-71892259 | Msa0138720:CDS | 50.0% | |
| !! | ATTGAGCTTGGAGGCACTGT+GGG | + | chr1_3:71892492-71892511 | Msa0138720:CDS | 50.0% |
| CCTCGACAACAGTCAAAGGA+TGG | - | chr1_3:71893369-71893388 | None:intergenic | 50.0% | |
| CCATCCTTTGACTGTTGTCG+AGG | + | chr1_3:71893366-71893385 | Msa0138720:intron | 50.0% | |
| AAGGTTGCGGGACATTCACT+TGG | + | chr1_3:71893418-71893437 | Msa0138720:intron | 50.0% | |
| CTACACCCAACACTGGTATC+AGG | - | chr1_3:71893937-71893956 | None:intergenic | 50.0% | |
| ! | GATACCAGTGTTGGGTGTAG+TGG | + | chr1_3:71893937-71893956 | Msa0138720:CDS | 50.0% |
| ! | TACCAGTGTTGGGTGTAGTG+GGG | + | chr1_3:71893939-71893958 | Msa0138720:CDS | 50.0% |
| TCCCTGACACTGTGTTGTGT+CGG | - | chr1_3:71894062-71894081 | None:intergenic | 50.0% | |
| TTTAGCAAGTCGCTCTGCTG+AGG | + | chr1_3:71894112-71894131 | Msa0138720:CDS | 50.0% | |
| TGTGATATTGGGCCTTACCG+AGG | + | chr1_3:71894682-71894701 | Msa0138720:intron | 50.0% | |
| TGGGCCTTACCGAGGAAATT+TGG | + | chr1_3:71894690-71894709 | Msa0138720:intron | 50.0% | |
| ATTCAATGTGCAGCCTCTGC+TGG | + | chr1_3:71895068-71895087 | Msa0138720:intron | 50.0% | |
| TCCTTGGTACTTTCCAGCAG+AGG | - | chr1_3:71895084-71895103 | None:intergenic | 50.0% | |
| AAGTTGACAACGGGATGCAG+GGG | - | chr1_3:71895682-71895701 | None:intergenic | 50.0% | |
| ! | CAAGTTGACAACGGGATGCA+GGG | - | chr1_3:71895683-71895702 | None:intergenic | 50.0% |
| !! | TCAAGTTGACAACGGGATGC+AGG | - | chr1_3:71895684-71895703 | None:intergenic | 50.0% |
| CATACTTGGGAAGGTTCTGC+TGG | + | chr1_3:71895941-71895960 | Msa0138720:intron | 50.0% | |
| ! | GCAAATCAGGAGGTGTAGCA+CGG | - | chr1_3:71896058-71896077 | None:intergenic | 50.0% |
| ! | GTGCTACACCTCCTGATTTG+CGG | + | chr1_3:71896057-71896076 | Msa0138720:CDS | 50.0% |
| TCAGTCCATTGCCGCAAATC+AGG | - | chr1_3:71896071-71896090 | None:intergenic | 50.0% | |
| ACAGGTTAGGATTGCCATGG+TGG | + | chr1_3:71896210-71896229 | Msa0138720:intron | 50.0% | |
| CAGGTTAGGATTGCCATGGT+GGG | + | chr1_3:71896211-71896230 | Msa0138720:intron | 50.0% | |
| GTGCAACACAAGCATGCAGT+AGG | - | chr1_3:71896703-71896722 | None:intergenic | 50.0% | |
| CTTCAGAGTCTTCCATGCTG+CGG | - | chr1_3:71896908-71896927 | None:intergenic | 50.0% | |
| TGATCCCGCTATGTGCTAGA+CGG | + | chr1_3:71897015-71897034 | Msa0138720:intron | 50.0% | |
| GTCTTGGTTCCAGGAGGATT+TGG | + | chr1_3:71897497-71897516 | Msa0138720:CDS | 50.0% | |
| TTTGGAGATCGTGGTGTGAG+AGG | + | chr1_3:71897515-71897534 | Msa0138720:CDS | 50.0% | |
| CCCAAGCAAATCCCCAAGTA+AGG | - | chr1_3:71897581-71897600 | None:intergenic | 50.0% | |
| ATTAGGGAAACTGGGGAGGA+GGG | - | chr1_3:71897818-71897837 | None:intergenic | 50.0% | |
| GACTAGCAGGCATCACAACA+AGG | - | chr1_3:71897847-71897866 | None:intergenic | 50.0% | |
| !! | ACAGGGTTCTAGGACTCACA+TGG | + | chr1_3:71897871-71897890 | Msa0138720:intron | 50.0% |
| !! | CAGGGTTCTAGGACTCACAT+GGG | + | chr1_3:71897872-71897891 | Msa0138720:intron | 50.0% |
| ! | TTTCTTGTTCTGGGCCTGTC+TGG | + | chr1_3:71898121-71898140 | Msa0138720:intron | 50.0% |
| ATGTCTGGTCGTTGACCATC+AGG | + | chr1_3:71898172-71898191 | Msa0138720:intron | 50.0% | |
| TGTCTGGTCGTTGACCATCA+GGG | + | chr1_3:71898173-71898192 | Msa0138720:intron | 50.0% | |
| !!! | GGCACTCGTTTTGAAACGGA+GGG | - | chr1_3:71898252-71898271 | None:intergenic | 50.0% |
| GGGTTTCAAGGGAAGGGAAA+TGG | + | chr1_3:71898574-71898593 | Msa0138720:intron | 50.0% | |
| CAAGGGAAGGGAAATGGGAA+AGG | + | chr1_3:71898580-71898599 | Msa0138720:intron | 50.0% | |
| GGGATGTAGGTTTGGACAGT+CGG | - | chr1_3:71898624-71898643 | None:intergenic | 50.0% | |
| ! | TTTTGCTAGGAAGGGAAGGG+GGG | - | chr1_3:71898645-71898664 | None:intergenic | 50.0% |
| ! | CTTTTGCTAGGAAGGGAAGG+GGG | - | chr1_3:71898646-71898665 | None:intergenic | 50.0% |
| ! | CCTTTTGCTAGGAAGGGAAG+GGG | - | chr1_3:71898647-71898666 | None:intergenic | 50.0% |
| ! | CACCTTTTGCTAGGAAGGGA+AGG | - | chr1_3:71898649-71898668 | None:intergenic | 50.0% |
| ACGGCATCGTCATAGATACG+AGG | + | chr1_3:71899223-71899242 | Msa0138720:CDS | 50.0% | |
| GGATGAAAGCGGAAGACGAA+TGG | + | chr1_3:71899390-71899409 | Msa0138720:CDS | 50.0% | |
| TGAAAGCGGAAGACGAATGG+AGG | + | chr1_3:71899393-71899412 | Msa0138720:CDS | 50.0% | |
| CCAGGCCGAGATTTGAATTC+GGG | - | chr1_3:71899663-71899682 | None:intergenic | 50.0% | |
| CCCAGGCCGAGATTTGAATT+CGG | - | chr1_3:71899664-71899683 | None:intergenic | 50.0% | |
| CCGAATTCAAATCTCGGCCT+GGG | + | chr1_3:71899661-71899680 | Msa0138720:CDS | 50.0% | |
| AACAAAGCAGATGGTCTCCC+AGG | - | chr1_3:71899681-71899700 | None:intergenic | 50.0% | |
| CAGATGGTGTAAACGGCTCT+TGG | - | chr1_3:71899769-71899788 | None:intergenic | 50.0% | |
| GGTCTCATATTGGCAGCAAC+GGG | + | chr1_3:71900053-71900072 | Msa0138720:intron | 50.0% | |
| GTCTCATATTGGCAGCAACG+GGG | + | chr1_3:71900054-71900073 | Msa0138720:CDS | 50.0% | |
| GAGGAATGGGAATCCTGAAG+TGG | + | chr1_3:71900241-71900260 | Msa0138720:intron | 50.0% | |
| TACCCCATGCTTCTCTAGGT+TGG | + | chr1_3:71900278-71900297 | Msa0138720:intron | 50.0% | |
| GCCTGTGAGTGTCAGGTTAA+TGG | - | chr1_3:71900765-71900784 | None:intergenic | 50.0% | |
| ! | AAAAGGAGCACGCACGTTTG+GGG | - | chr1_3:71900841-71900860 | None:intergenic | 50.0% |
| ! | GAAAAGGAGCACGCACGTTT+GGG | - | chr1_3:71900842-71900861 | None:intergenic | 50.0% |
| ! | AGAAAAGGAGCACGCACGTT+TGG | - | chr1_3:71900843-71900862 | None:intergenic | 50.0% |
| ! | TTTTGATGGAGGTGACGCGG+AGG | - | chr1_3:71891731-71891750 | None:intergenic | 55.0% |
| ! | TGTGCTTGAGAAGGAGCGCA+AGG | + | chr1_3:71892227-71892246 | Msa0138720:CDS | 55.0% |
| ! | GTGCTTGAGAAGGAGCGCAA+GGG | + | chr1_3:71892228-71892247 | Msa0138720:CDS | 55.0% |
| TGAGTCGGTTGCTGTGATCC+CGG | + | chr1_3:71892434-71892453 | Msa0138720:CDS | 55.0% | |
| GTTGCTGTGATCCCGGTTGA+TGG | + | chr1_3:71892441-71892460 | Msa0138720:CDS | 55.0% | |
| !! | GATTGAGCTTGGAGGCACTG+TGG | + | chr1_3:71892491-71892510 | Msa0138720:CDS | 55.0% |
| GAAGTTGTCAGGCCCTGAGA+AGG | - | chr1_3:71893897-71893916 | None:intergenic | 55.0% | |
| ! | ACCAGTGTTGGGTGTAGTGG+GGG | + | chr1_3:71893940-71893959 | Msa0138720:CDS | 55.0% |
| AGCCGACACAACACAGTGTC+AGG | + | chr1_3:71894057-71894076 | Msa0138720:CDS | 55.0% | |
| GCCGACACAACACAGTGTCA+GGG | + | chr1_3:71894058-71894077 | Msa0138720:CDS | 55.0% | |
| GCACTCAGCTTCAACCCCTT+TGG | - | chr1_3:71894755-71894774 | None:intergenic | 55.0% | |
| !! | GCCTCTGCTGGAAAGTACCA+AGG | + | chr1_3:71895080-71895099 | Msa0138720:intron | 55.0% |
| GAGGTGTAGCACGGCTGAAA+AGG | - | chr1_3:71896049-71896068 | None:intergenic | 55.0% | |
| ! | CACCTCCTGATTTGCGGCAA+TGG | + | chr1_3:71896063-71896082 | Msa0138720:CDS | 55.0% |
| GTCCATTGCCGCAAATCAGG+AGG | - | chr1_3:71896068-71896087 | None:intergenic | 55.0% | |
| CGCAGCATGGAAGACTCTGA+AGG | + | chr1_3:71896906-71896925 | Msa0138720:CDS | 55.0% | |
| GCAGAGTGCAGCTTGTGTCT+TGG | + | chr1_3:71897481-71897500 | Msa0138720:intron | 55.0% | |
| GCAGCTTGTGTCTTGGTTCC+AGG | + | chr1_3:71897488-71897507 | Msa0138720:CDS | 55.0% | |
| GCTTGTGTCTTGGTTCCAGG+AGG | + | chr1_3:71897491-71897510 | Msa0138720:CDS | 55.0% | |
| CCACGATCTCCAAATCCTCC+TGG | - | chr1_3:71897509-71897528 | None:intergenic | 55.0% | |
| CCAGGAGGATTTGGAGATCG+TGG | + | chr1_3:71897506-71897525 | Msa0138720:CDS | 55.0% | |
| TTAGGGAAACTGGGGAGGAG+GGG | - | chr1_3:71897817-71897836 | None:intergenic | 55.0% | |
| GATTAGGGAAACTGGGGAGG+AGG | - | chr1_3:71897819-71897838 | None:intergenic | 55.0% | |
| !!! | CGGCACTCGTTTTGAAACGG+AGG | - | chr1_3:71898253-71898272 | None:intergenic | 55.0% |
| TTTGCTAGGAAGGGAAGGGG+GGG | - | chr1_3:71898644-71898663 | None:intergenic | 55.0% | |
| CCCCTTCCCTTCCTAGCAAA+AGG | + | chr1_3:71898644-71898663 | Msa0138720:intron | 55.0% | |
| ATGGAGGACACATCACACGC+TGG | - | chr1_3:71899040-71899059 | None:intergenic | 55.0% | |
| CCCGAATTCAAATCTCGGCC+TGG | + | chr1_3:71899660-71899679 | Msa0138720:CDS | 55.0% | |
| ATTGGCAGCAACGGGGAAGT+TGG | + | chr1_3:71900061-71900080 | Msa0138720:CDS | 55.0% | |
| ATTGGGAGCAAGGGAATGGG+AGG | + | chr1_3:71900196-71900215 | Msa0138720:intron | 55.0% | |
| GGGAATGGGAGGTAGGAACT+AGG | + | chr1_3:71900207-71900226 | Msa0138720:intron | 55.0% | |
| CTGCACGCATACTCCACTTC+AGG | - | chr1_3:71900257-71900276 | None:intergenic | 55.0% | |
| CAGCTACCCCATGCTTCTCT+AGG | + | chr1_3:71900274-71900293 | Msa0138720:intron | 55.0% | |
| GGGGCATGGTGAACTGAACA+AGG | - | chr1_3:71900822-71900841 | None:intergenic | 55.0% | |
| ATCTCCGGCGGAGTCGTTAG+CGG | + | chr1_3:71891651-71891670 | Msa0138720:CDS | 60.0% | |
| TCCCCCACTACACCCAACAC+TGG | - | chr1_3:71893944-71893963 | None:intergenic | 60.0% | |
| AACGGGATGCAGGGGACAGT+TGG | - | chr1_3:71895674-71895693 | None:intergenic | 60.0% | |
| CATGCTGCGGCATGTGCTTC+TGG | - | chr1_3:71896895-71896914 | None:intergenic | 60.0% | |
| ! | CAGAAGCACATGCCGCAGCA+TGG | + | chr1_3:71896893-71896912 | Msa0138720:CDS | 60.0% |
| GGAAGGGGGGGATGTAGGTT+TGG | - | chr1_3:71898632-71898651 | None:intergenic | 60.0% | |
| GGAGCAAGGGAATGGGAGGT+AGG | + | chr1_3:71900200-71900219 | Msa0138720:intron | 60.0% | |
| GTCGTTAGCGGCCTCGGCAA+AGG | + | chr1_3:71891663-71891682 | Msa0138720:CDS | 65.0% | |
| GGCGTCGTCCTCAAAGCCTG+CGG | + | chr1_3:71891705-71891724 | Msa0138720:CDS | 65.0% | |
| GGAAGGGAAGGGGGGGATGT+AGG | - | chr1_3:71898637-71898656 | None:intergenic | 65.0% | |
| ! | GAGCACGCACGTTTGGGGCA+TGG | - | chr1_3:71900836-71900855 | None:intergenic | 65.0% |
| GAGGCCGCTAACGACTCCGC+CGG | - | chr1_3:71891658-71891677 | None:intergenic | 70.0% | |
| GGCGGAGTCGTTAGCGGCCT+CGG | + | chr1_3:71891657-71891676 | Msa0138720:CDS | 70.0% | |
| TGGCGGTGACGCCTTTGCCG+AGG | - | chr1_3:71891677-71891696 | None:intergenic | 70.0% | |
| GGCGTCACCGCCAGCAGCAT+CGG | + | chr1_3:71891684-71891703 | Msa0138720:CDS | 70.0% | |
| GACGACGCCGATGCTGCTGG+CGG | - | chr1_3:71891694-71891713 | None:intergenic | 70.0% | |
| GAGGACGACGCCGATGCTGC+TGG | - | chr1_3:71891697-71891716 | None:intergenic | 70.0% | |
| CGCGGAGGCCGCAGGCTTTG+AGG | - | chr1_3:71891716-71891735 | None:intergenic | 75.0% | |
| ! | GGAGGTGACGCGGAGGCCGC+AGG | - | chr1_3:71891724-71891743 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 71891485 | 71901053 | 71891485 | ID=Msa0138720;Name=Msa0138720 |
| chr1_3 | mRNA | 71891485 | 71901053 | 71891485 | ID=Msa0138720-mRNA-1;Parent=Msa0138720;Name=Msa0138720-mRNA-1;_AED=0.17;_eAED=0.17;_QI=151|1|1|1|0.95|0.91|23|447|562 |
| chr1_3 | exon | 71891485 | 71891753 | 71891485 | ID=Msa0138720-mRNA-1:exon:25038;Parent=Msa0138720-mRNA-1 |
| chr1_3 | exon | 71891840 | 71891919 | 71891840 | ID=Msa0138720-mRNA-1:exon:25039;Parent=Msa0138720-mRNA-1 |
| chr1_3 | exon | 71892043 | 71892129 | 71892043 | ID=Msa0138720-mRNA-1:exon:25040;Parent=Msa0138720-mRNA-1 |
| chr1_3 | exon | 71892225 | 71892275 | 71892225 | ID=Msa0138720-mRNA-1:exon:25041;Parent=Msa0138720-mRNA-1 |
| chr1_3 | exon | 71892396 | 71892513 | 71892396 | ID=Msa0138720-mRNA-1:exon:25042;Parent=Msa0138720-mRNA-1 |
| chr1_3 | exon | 71892618 | 71892674 | 71892618 | ID=Msa0138720-mRNA-1:exon:25043;Parent=Msa0138720-mRNA-1 |
| chr1_3 | exon | 71893903 | 71893967 | 71893903 | ID=Msa0138720-mRNA-1:exon:25044;Parent=Msa0138720-mRNA-1 |
| chr1_3 | exon | 71894050 | 71894133 | 71894050 | ID=Msa0138720-mRNA-1:exon:25045;Parent=Msa0138720-mRNA-1 |
| chr1_3 | exon | 71895081 | 71895131 | 71895081 | ID=Msa0138720-mRNA-1:exon:25046;Parent=Msa0138720-mRNA-1 |
| chr1_3 | exon | 71895223 | 71895285 | 71895223 | ID=Msa0138720-mRNA-1:exon:25047;Parent=Msa0138720-mRNA-1 |
| chr1_3 | exon | 71895379 | 71895425 | 71895379 | ID=Msa0138720-mRNA-1:exon:25048;Parent=Msa0138720-mRNA-1 |
| chr1_3 | exon | 71896055 | 71896124 | 71896055 | ID=Msa0138720-mRNA-1:exon:25049;Parent=Msa0138720-mRNA-1 |
| chr1_3 | exon | 71896214 | 71896276 | 71896214 | ID=Msa0138720-mRNA-1:exon:25050;Parent=Msa0138720-mRNA-1 |
| chr1_3 | exon | 71896698 | 71896787 | 71896698 | ID=Msa0138720-mRNA-1:exon:25051;Parent=Msa0138720-mRNA-1 |
| chr1_3 | exon | 71896889 | 71896927 | 71896889 | ID=Msa0138720-mRNA-1:exon:25052;Parent=Msa0138720-mRNA-1 |
| chr1_3 | exon | 71897485 | 71897634 | 71897485 | ID=Msa0138720-mRNA-1:exon:25053;Parent=Msa0138720-mRNA-1 |
| chr1_3 | exon | 71897720 | 71897797 | 71897720 | ID=Msa0138720-mRNA-1:exon:25054;Parent=Msa0138720-mRNA-1 |
| chr1_3 | exon | 71897875 | 71897960 | 71897875 | ID=Msa0138720-mRNA-1:exon:25055;Parent=Msa0138720-mRNA-1 |
| chr1_3 | exon | 71899196 | 71899244 | 71899196 | ID=Msa0138720-mRNA-1:exon:25056;Parent=Msa0138720-mRNA-1 |
| chr1_3 | exon | 71899334 | 71899414 | 71899334 | ID=Msa0138720-mRNA-1:exon:25057;Parent=Msa0138720-mRNA-1 |
| chr1_3 | exon | 71899612 | 71899705 | 71899612 | ID=Msa0138720-mRNA-1:exon:25058;Parent=Msa0138720-mRNA-1 |
| chr1_3 | exon | 71900054 | 71900168 | 71900054 | ID=Msa0138720-mRNA-1:exon:25059;Parent=Msa0138720-mRNA-1 |
| chr1_3 | exon | 71900654 | 71901053 | 71900654 | ID=Msa0138720-mRNA-1:exon:25060;Parent=Msa0138720-mRNA-1 |
| chr1_3 | five_prime_UTR | 71891485 | 71891635 | 71891485 | ID=Msa0138720-mRNA-1:five_prime_utr;Parent=Msa0138720-mRNA-1 |
| chr1_3 | CDS | 71891636 | 71891753 | 71891636 | ID=Msa0138720-mRNA-1:cds;Parent=Msa0138720-mRNA-1 |
| chr1_3 | CDS | 71891840 | 71891919 | 71891840 | ID=Msa0138720-mRNA-1:cds;Parent=Msa0138720-mRNA-1 |
| chr1_3 | CDS | 71892043 | 71892129 | 71892043 | ID=Msa0138720-mRNA-1:cds;Parent=Msa0138720-mRNA-1 |
| chr1_3 | CDS | 71892225 | 71892275 | 71892225 | ID=Msa0138720-mRNA-1:cds;Parent=Msa0138720-mRNA-1 |
| chr1_3 | CDS | 71892396 | 71892513 | 71892396 | ID=Msa0138720-mRNA-1:cds;Parent=Msa0138720-mRNA-1 |
| chr1_3 | CDS | 71892618 | 71892674 | 71892618 | ID=Msa0138720-mRNA-1:cds;Parent=Msa0138720-mRNA-1 |
| chr1_3 | CDS | 71893903 | 71893967 | 71893903 | ID=Msa0138720-mRNA-1:cds;Parent=Msa0138720-mRNA-1 |
| chr1_3 | CDS | 71894050 | 71894133 | 71894050 | ID=Msa0138720-mRNA-1:cds;Parent=Msa0138720-mRNA-1 |
| chr1_3 | CDS | 71895081 | 71895131 | 71895081 | ID=Msa0138720-mRNA-1:cds;Parent=Msa0138720-mRNA-1 |
| chr1_3 | CDS | 71895223 | 71895285 | 71895223 | ID=Msa0138720-mRNA-1:cds;Parent=Msa0138720-mRNA-1 |
| chr1_3 | CDS | 71895379 | 71895425 | 71895379 | ID=Msa0138720-mRNA-1:cds;Parent=Msa0138720-mRNA-1 |
| chr1_3 | CDS | 71896055 | 71896124 | 71896055 | ID=Msa0138720-mRNA-1:cds;Parent=Msa0138720-mRNA-1 |
| chr1_3 | CDS | 71896214 | 71896276 | 71896214 | ID=Msa0138720-mRNA-1:cds;Parent=Msa0138720-mRNA-1 |
| chr1_3 | CDS | 71896698 | 71896787 | 71896698 | ID=Msa0138720-mRNA-1:cds;Parent=Msa0138720-mRNA-1 |
| chr1_3 | CDS | 71896889 | 71896927 | 71896889 | ID=Msa0138720-mRNA-1:cds;Parent=Msa0138720-mRNA-1 |
| chr1_3 | CDS | 71897485 | 71897634 | 71897485 | ID=Msa0138720-mRNA-1:cds;Parent=Msa0138720-mRNA-1 |
| chr1_3 | CDS | 71897720 | 71897797 | 71897720 | ID=Msa0138720-mRNA-1:cds;Parent=Msa0138720-mRNA-1 |
| chr1_3 | CDS | 71897875 | 71897960 | 71897875 | ID=Msa0138720-mRNA-1:cds;Parent=Msa0138720-mRNA-1 |
| chr1_3 | CDS | 71899196 | 71899244 | 71899196 | ID=Msa0138720-mRNA-1:cds;Parent=Msa0138720-mRNA-1 |
| chr1_3 | CDS | 71899334 | 71899414 | 71899334 | ID=Msa0138720-mRNA-1:cds;Parent=Msa0138720-mRNA-1 |
| chr1_3 | CDS | 71899612 | 71899705 | 71899612 | ID=Msa0138720-mRNA-1:cds;Parent=Msa0138720-mRNA-1 |
| chr1_3 | CDS | 71900054 | 71900121 | 71900054 | ID=Msa0138720-mRNA-1:cds;Parent=Msa0138720-mRNA-1 |
| chr1_3 | three_prime_UTR | 71900122 | 71900168 | 71900122 | ID=Msa0138720-mRNA-1:three_prime_utr;Parent=Msa0138720-mRNA-1 |
| chr1_3 | three_prime_UTR | 71900654 | 71901053 | 71900654 | ID=Msa0138720-mRNA-1:three_prime_utr;Parent=Msa0138720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
