Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031420 | Msa0514310 | 0.899650 | 1.606313e-77 | -8.615850e-47 |
| Msa0031420 | Msa0602990 | 0.904107 | 1.733763e-79 | -8.615850e-47 |
| Msa0031420 | Msa0724310 | 0.920150 | 1.842453e-87 | -8.615850e-47 |
| Msa0031420 | Msa0804800 | 0.894968 | 1.496284e-75 | -8.615850e-47 |
| Msa0031420 | Msa1115870 | 0.808153 | 3.562907e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031420 | MtrunA17_Chr1g0172731 | 80.464 | 302 | 59 | 0 | 1 | 302 | 104 | 405 | 0.0 | 531 |
| Msa0031420 | MtrunA17_Chr1g0190171 | 79.470 | 302 | 62 | 0 | 1 | 302 | 104 | 405 | 0.0 | 527 |
| Msa0031420 | MtrunA17_Chr2g0321401 | 82.667 | 150 | 26 | 0 | 1 | 150 | 103 | 252 | 3.31e-92 | 274 |
| Msa0031420 | MtrunA17_Chr2g0285471 | 82.000 | 150 | 27 | 0 | 1 | 150 | 35 | 184 | 4.98e-92 | 271 |
| Msa0031420 | MtrunA17_Chr8g0334561 | 80.667 | 150 | 29 | 0 | 1 | 150 | 104 | 253 | 1.15e-91 | 273 |
| Msa0031420 | MtrunA17_Chr6g0477141 | 44.856 | 243 | 130 | 2 | 1 | 242 | 179 | 418 | 1.75e-69 | 223 |
| Msa0031420 | MtrunA17_Chr1g0182341 | 44.444 | 261 | 113 | 3 | 1 | 254 | 99 | 334 | 3.95e-68 | 217 |
| Msa0031420 | MtrunA17_Chr7g0226311 | 43.262 | 282 | 150 | 5 | 2 | 281 | 49 | 322 | 3.73e-67 | 213 |
| Msa0031420 | MtrunA17_Chr6g0478531 | 39.298 | 285 | 165 | 4 | 1 | 284 | 77 | 354 | 4.63e-67 | 214 |
| Msa0031420 | MtrunA17_Chr1g0207391 | 41.365 | 249 | 136 | 5 | 2 | 247 | 128 | 369 | 4.82e-59 | 194 |
| Msa0031420 | MtrunA17_Chr8g0391981 | 39.649 | 285 | 151 | 6 | 1 | 282 | 116 | 382 | 6.48e-58 | 191 |
| Msa0031420 | MtrunA17_Chr7g0267201 | 50.781 | 128 | 56 | 1 | 1 | 121 | 33 | 160 | 2.21e-40 | 139 |
| Msa0031420 | MtrunA17_Chr5g0420851 | 87.931 | 58 | 7 | 0 | 246 | 303 | 1 | 58 | 1.31e-28 | 104 |
| Msa0031420 | MtrunA17_Chr1g0211031 | 61.176 | 85 | 31 | 1 | 218 | 302 | 1 | 83 | 1.03e-27 | 103 |
| Msa0031420 | MtrunA17_Chr8g0370251 | 61.176 | 85 | 31 | 1 | 218 | 302 | 1 | 83 | 1.03e-27 | 103 |
| Msa0031420 | MtrunA17_Chr5g0427241 | 58.824 | 85 | 33 | 1 | 218 | 302 | 1 | 83 | 8.61e-27 | 100 |
| Msa0031420 | MtrunA17_Chr2g0295621 | 58.824 | 85 | 33 | 1 | 218 | 302 | 1 | 83 | 9.87e-27 | 100 |
| Msa0031420 | MtrunA17_Chr4g0018411 | 36.364 | 121 | 71 | 3 | 150 | 268 | 10 | 126 | 5.73e-16 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031420 | AT5G41980.1 | 36.000 | 275 | 156 | 5 | 1 | 275 | 80 | 334 | 3.36e-53 | 178 |
| Msa0031420 | AT1G43722.1 | 39.726 | 219 | 123 | 4 | 1 | 212 | 104 | 320 | 1.78e-46 | 159 |
| Msa0031420 | AT5G28730.1 | 36.170 | 188 | 88 | 4 | 1 | 187 | 62 | 218 | 2.84e-31 | 119 |
| Msa0031420 | AT3G30525.1 | 36.686 | 169 | 101 | 2 | 76 | 239 | 1 | 168 | 8.04e-31 | 114 |
| Msa0031420 | AT5G35695.1 | 41.727 | 139 | 67 | 3 | 114 | 250 | 25 | 151 | 7.89e-29 | 110 |
| Msa0031420 | AT5G28950.1 | 44.318 | 88 | 49 | 0 | 58 | 145 | 11 | 98 | 8.62e-21 | 87.0 |
| Msa0031420 | AT4G10890.3 | 45.055 | 91 | 49 | 1 | 125 | 215 | 71 | 160 | 1.50e-16 | 80.1 |
| Msa0031420 | AT4G10890.1 | 45.055 | 91 | 49 | 1 | 125 | 215 | 71 | 160 | 1.50e-16 | 80.1 |
| Msa0031420 | AT4G10890.2 | 45.055 | 91 | 49 | 1 | 125 | 215 | 71 | 160 | 1.50e-16 | 80.1 |
Find 54 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATTATCACTCAAGTTTA+AGG | 0.112859 | 1_1:+58144040 | Msa0031420:CDS |
| AGTGACCAAACTAGATTTAT+TGG | 0.196921 | 1_1:+58143658 | Msa0031420:CDS |
| TTATCGTAGACCAGTTAATT+TGG | 0.251482 | 1_1:+58144260 | Msa0031420:CDS |
| CCCTGGGAACGCCGAAAATC+AGG | 0.297546 | 1_1:-58143991 | None:intergenic |
| TGAGATGAATCCAAATTAAC+TGG | 0.308066 | 1_1:-58144270 | None:intergenic |
| TTCGTCCAATAAATCTAGTT+TGG | 0.330713 | 1_1:-58143663 | None:intergenic |
| CCCCATCGGTGTTGGATAAC+CGG | 0.331584 | 1_1:-58143932 | None:intergenic |
| TGTGTCTTAATTGTGAATTT+AGG | 0.331819 | 1_1:-58144123 | None:intergenic |
| TTCAAAGTGATCCACGATAT+TGG | 0.339686 | 1_1:+58143572 | Msa0031420:CDS |
| TGCACAATAGAAAGAACTTT+TGG | 0.340416 | 1_1:+58144063 | Msa0031420:CDS |
| TATTAGAAGGAATGCTGATA+TGG | 0.386332 | 1_1:+58144185 | Msa0031420:CDS |
| CTATACATAACTTTATTAGA+AGG | 0.401801 | 1_1:+58144172 | Msa0031420:CDS |
| CCAACACCGATGGGGTATCT+TGG | 0.413955 | 1_1:+58143940 | Msa0031420:CDS |
| TGTACCATCGATTGCTCCTA+TGG | 0.423826 | 1_1:-58143611 | None:intergenic |
| GCAATGTTCTTACTTGTTGT+TGG | 0.423911 | 1_1:+58143394 | Msa0031420:exon |
| TACGATAATCATCATGATCA+AGG | 0.435864 | 1_1:-58144245 | None:intergenic |
| TTAATACCTGGAGGAGGATG+TGG | 0.473645 | 1_1:-58143823 | None:intergenic |
| CCAAGATACCCCATCGGTGT+TGG | 0.475954 | 1_1:-58143940 | None:intergenic |
| TTCTTACTTGTTGTTGGACA+TGG | 0.479104 | 1_1:+58143400 | Msa0031420:CDS |
| TTGAGGCTTTATATATTCGA+TGG | 0.486174 | 1_1:-58143518 | None:intergenic |
| TTTAGGTATGTATTATTTGG+TGG | 0.486635 | 1_1:+58143906 | Msa0031420:intron |
| ATGTATTATTTGGTGGATGC+CGG | 0.486645 | 1_1:+58143913 | Msa0031420:CDS |
| ACTAGATTTATTGGACGAAA+GGG | 0.486947 | 1_1:+58143667 | Msa0031420:CDS |
| CGTCGATTTCAATCGGTATG+AGG | 0.488598 | 1_1:+58144209 | Msa0031420:CDS |
| GATGAATCACGTTCGAAACT+CGG | 0.500586 | 1_1:+58144320 | Msa0031420:CDS |
| ATGTAATGGCTGTATGTGAT+TGG | 0.504425 | 1_1:+58143704 | Msa0031420:CDS |
| AACTAGATTTATTGGACGAA+AGG | 0.514080 | 1_1:+58143666 | Msa0031420:CDS |
| GCCGGTTATCCAACACCGAT+GGG | 0.518380 | 1_1:+58143931 | Msa0031420:CDS |
| TGATAACGTTCACATCTGTA+TGG | 0.526253 | 1_1:-58143964 | None:intergenic |
| TGAAGTCGTTGTTGCAACAA+TGG | 0.546744 | 1_1:+58144149 | Msa0031420:CDS |
| GATTTGCATTTGTGAGAGCA+TGG | 0.547923 | 1_1:-58143792 | None:intergenic |
| AATAAATCTAGTTTGGTCAC+TGG | 0.549153 | 1_1:-58143656 | None:intergenic |
| TGCCGGTTATCCAACACCGA+TGG | 0.556028 | 1_1:+58143930 | Msa0031420:CDS |
| CCTGGGAACGCCGAAAATCA+GGG | 0.556357 | 1_1:-58143990 | None:intergenic |
| ATATGGACGTCGATTTCAAT+CGG | 0.561835 | 1_1:+58144202 | Msa0031420:CDS |
| TCACAGTTTCTCCTGAGTGT+TGG | 0.566113 | 1_1:-58143453 | None:intergenic |
| GTAATAGAATGATTCAAGAA+AGG | 0.570517 | 1_1:+58143428 | Msa0031420:CDS |
| ACTTGTTGTTGGACATGGAG+TGG | 0.572106 | 1_1:+58143405 | Msa0031420:CDS |
| CTTGTTGTTGGACATGGAGT+GGG | 0.572884 | 1_1:+58143406 | Msa0031420:CDS |
| CAAGAAAGGTTCCAACACTC+AGG | 0.575639 | 1_1:+58143442 | Msa0031420:CDS |
| ATATCCGACACAAAATGTAA+TGG | 0.578336 | 1_1:+58143690 | Msa0031420:CDS |
| ATAATATTAATACCTGGAGG+AGG | 0.608585 | 1_1:-58143829 | None:intergenic |
| GTCACTGGCACTAACCACAC+AGG | 0.619956 | 1_1:-58143641 | None:intergenic |
| ACGATAATCATCATGATCAA+GGG | 0.621055 | 1_1:-58144244 | None:intergenic |
| GCATGACTATCACGGAACAA+AGG | 0.635948 | 1_1:-58143544 | None:intergenic |
| TCACGGAACAAAGGATCTTG+AGG | 0.641766 | 1_1:-58143535 | None:intergenic |
| AACGTGATTCATCTCAGATG+AGG | 0.643146 | 1_1:-58144310 | None:intergenic |
| TCACTGGCACTAACCACACA+GGG | 0.685550 | 1_1:-58143640 | None:intergenic |
| AATGCCATAGGAGCAATCGA+TGG | 0.692262 | 1_1:+58143607 | Msa0031420:CDS |
| CCGGTTATCCAACACCGATG+GGG | 0.699683 | 1_1:+58143932 | Msa0031420:CDS |
| TATGGACCAAGATACCCCAT+CGG | 0.700535 | 1_1:-58143946 | None:intergenic |
| TGGTACACATATTCCCTGTG+TGG | 0.723477 | 1_1:+58143627 | Msa0031420:CDS |
| GGGAACGCCGAAAATCAGGG+AGG | 0.802967 | 1_1:-58143987 | None:intergenic |
| GGGGTTTGAAAATAACAACG+AGG | 0.822642 | 1_1:+58144011 | Msa0031420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAATTTAATTTATTTTT+AGG | + | chr1_1:58143889-58143908 | Msa0031420:intron | 0.0% |
| !!! | TTATAATTTAATTTATTTTT+AGG | + | chr1_1:58143889-58143908 | Msa0031420:intron | 0.0% |
| !! | TACTAATAAATAAGTTGTAA+AGG | - | chr1_1:58143855-58143874 | None:intergenic | 15.0% |
| !!! | ATTTTTAGGTATGTATTATT+TGG | + | chr1_1:58143903-58143922 | Msa0031420:intron | 15.0% |
| !! | TACTAATAAATAAGTTGTAA+AGG | - | chr1_1:58143855-58143874 | None:intergenic | 15.0% |
| !!! | ATTTTTAGGTATGTATTATT+TGG | + | chr1_1:58143903-58143922 | Msa0031420:intron | 15.0% |
| !! | TAAAGGATAATATTAATACC+TGG | - | chr1_1:58143838-58143857 | None:intergenic | 20.0% |
| !! | ATTATTATCACTCAAGTTTA+AGG | + | chr1_1:58144040-58144059 | Msa0031420:CDS | 20.0% |
| !! | CTATACATAACTTTATTAGA+AGG | + | chr1_1:58144172-58144191 | Msa0031420:CDS | 20.0% |
| !! | TAAAGGATAATATTAATACC+TGG | - | chr1_1:58143838-58143857 | None:intergenic | 20.0% |
| !! | ATTATTATCACTCAAGTTTA+AGG | + | chr1_1:58144040-58144059 | Msa0031420:CDS | 20.0% |
| !! | CTATACATAACTTTATTAGA+AGG | + | chr1_1:58144172-58144191 | Msa0031420:CDS | 20.0% |
| ! | GTAATAGAATGATTCAAGAA+AGG | + | chr1_1:58143428-58143447 | Msa0031420:CDS | 25.0% |
| ! | TTTAGGTATGTATTATTTGG+TGG | + | chr1_1:58143906-58143925 | Msa0031420:intron | 25.0% |
| ! | TGTGTCTTAATTGTGAATTT+AGG | - | chr1_1:58144126-58144145 | None:intergenic | 25.0% |
| ! | AGAGTTCAAGAAAAATCATT+AGG | + | chr1_1:58144359-58144378 | Msa0031420:CDS | 25.0% |
| ! | GTAATAGAATGATTCAAGAA+AGG | + | chr1_1:58143428-58143447 | Msa0031420:CDS | 25.0% |
| ! | TTTAGGTATGTATTATTTGG+TGG | + | chr1_1:58143906-58143925 | Msa0031420:intron | 25.0% |
| ! | TGTGTCTTAATTGTGAATTT+AGG | - | chr1_1:58144126-58144145 | None:intergenic | 25.0% |
| ! | TTGAGGCTTTATATATTCGA+TGG | - | chr1_1:58143521-58143540 | None:intergenic | 30.0% |
| ! | GAATTTTTGCATGACTATCA+CGG | - | chr1_1:58143555-58143574 | None:intergenic | 30.0% |
| TTAAAAAATGGCCAATATCG+TGG | - | chr1_1:58143586-58143605 | None:intergenic | 30.0% | |
| CCTATGGCATTCTTAAAAAA+TGG | - | chr1_1:58143598-58143617 | None:intergenic | 30.0% | |
| !!! | CCATTTTTTAAGAATGCCAT+AGG | + | chr1_1:58143595-58143614 | Msa0031420:CDS | 30.0% |
| ! | AATAAATCTAGTTTGGTCAC+TGG | - | chr1_1:58143659-58143678 | None:intergenic | 30.0% |
| AGTGACCAAACTAGATTTAT+TGG | + | chr1_1:58143658-58143677 | Msa0031420:CDS | 30.0% | |
| TTCGTCCAATAAATCTAGTT+TGG | - | chr1_1:58143666-58143685 | None:intergenic | 30.0% | |
| AACTAGATTTATTGGACGAA+AGG | + | chr1_1:58143666-58143685 | Msa0031420:CDS | 30.0% | |
| ACTAGATTTATTGGACGAAA+GGG | + | chr1_1:58143667-58143686 | Msa0031420:CDS | 30.0% | |
| ATATCCGACACAAAATGTAA+TGG | + | chr1_1:58143690-58143709 | Msa0031420:CDS | 30.0% | |
| ATAATATTAATACCTGGAGG+AGG | - | chr1_1:58143832-58143851 | None:intergenic | 30.0% | |
| AGGATAATATTAATACCTGG+AGG | - | chr1_1:58143835-58143854 | None:intergenic | 30.0% | |
| ! | TGCACAATAGAAAGAACTTT+TGG | + | chr1_1:58144063-58144082 | Msa0031420:CDS | 30.0% |
| !! | TAGAAAGAACTTTTGGTGTA+TGG | + | chr1_1:58144070-58144089 | Msa0031420:CDS | 30.0% |
| TATTAGAAGGAATGCTGATA+TGG | + | chr1_1:58144185-58144204 | Msa0031420:CDS | 30.0% | |
| ACGATAATCATCATGATCAA+GGG | - | chr1_1:58144247-58144266 | None:intergenic | 30.0% | |
| TACGATAATCATCATGATCA+AGG | - | chr1_1:58144248-58144267 | None:intergenic | 30.0% | |
| TTATCGTAGACCAGTTAATT+TGG | + | chr1_1:58144260-58144279 | Msa0031420:CDS | 30.0% | |
| TGAGATGAATCCAAATTAAC+TGG | - | chr1_1:58144273-58144292 | None:intergenic | 30.0% | |
| ! | TTGAGGCTTTATATATTCGA+TGG | - | chr1_1:58143521-58143540 | None:intergenic | 30.0% |
| ! | GAATTTTTGCATGACTATCA+CGG | - | chr1_1:58143555-58143574 | None:intergenic | 30.0% |
| TTAAAAAATGGCCAATATCG+TGG | - | chr1_1:58143586-58143605 | None:intergenic | 30.0% | |
| CCTATGGCATTCTTAAAAAA+TGG | - | chr1_1:58143598-58143617 | None:intergenic | 30.0% | |
| !!! | CCATTTTTTAAGAATGCCAT+AGG | + | chr1_1:58143595-58143614 | Msa0031420:CDS | 30.0% |
| ! | AATAAATCTAGTTTGGTCAC+TGG | - | chr1_1:58143659-58143678 | None:intergenic | 30.0% |
| AGTGACCAAACTAGATTTAT+TGG | + | chr1_1:58143658-58143677 | Msa0031420:CDS | 30.0% | |
| TTCGTCCAATAAATCTAGTT+TGG | - | chr1_1:58143666-58143685 | None:intergenic | 30.0% | |
| AACTAGATTTATTGGACGAA+AGG | + | chr1_1:58143666-58143685 | Msa0031420:CDS | 30.0% | |
| ACTAGATTTATTGGACGAAA+GGG | + | chr1_1:58143667-58143686 | Msa0031420:CDS | 30.0% | |
| ATATCCGACACAAAATGTAA+TGG | + | chr1_1:58143690-58143709 | Msa0031420:CDS | 30.0% | |
| ATAATATTAATACCTGGAGG+AGG | - | chr1_1:58143832-58143851 | None:intergenic | 30.0% | |
| AGGATAATATTAATACCTGG+AGG | - | chr1_1:58143835-58143854 | None:intergenic | 30.0% | |
| ! | TGCACAATAGAAAGAACTTT+TGG | + | chr1_1:58144063-58144082 | Msa0031420:CDS | 30.0% |
| !! | TAGAAAGAACTTTTGGTGTA+TGG | + | chr1_1:58144070-58144089 | Msa0031420:CDS | 30.0% |
| TATTAGAAGGAATGCTGATA+TGG | + | chr1_1:58144185-58144204 | Msa0031420:CDS | 30.0% | |
| ACGATAATCATCATGATCAA+GGG | - | chr1_1:58144247-58144266 | None:intergenic | 30.0% | |
| TACGATAATCATCATGATCA+AGG | - | chr1_1:58144248-58144267 | None:intergenic | 30.0% | |
| TTATCGTAGACCAGTTAATT+TGG | + | chr1_1:58144260-58144279 | Msa0031420:CDS | 30.0% | |
| TGAGATGAATCCAAATTAAC+TGG | - | chr1_1:58144273-58144292 | None:intergenic | 30.0% | |
| !! | GCAATGTTCTTACTTGTTGT+TGG | + | chr1_1:58143394-58143413 | Msa0031420:exon | 35.0% |
| !! | TTCTTACTTGTTGTTGGACA+TGG | + | chr1_1:58143400-58143419 | Msa0031420:CDS | 35.0% |
| TTCAAAGTGATCCACGATAT+TGG | + | chr1_1:58143572-58143591 | Msa0031420:CDS | 35.0% | |
| ! | ACAGCCATTACATTTTGTGT+CGG | - | chr1_1:58143697-58143716 | None:intergenic | 35.0% |
| ATGTAATGGCTGTATGTGAT+TGG | + | chr1_1:58143704-58143723 | Msa0031420:CDS | 35.0% | |
| !!! | TGCTTCACTTTTGTTTTAGC+TGG | + | chr1_1:58143733-58143752 | Msa0031420:CDS | 35.0% |
| !!! | TCACTTTTGTTTTAGCTGGA+TGG | + | chr1_1:58143737-58143756 | Msa0031420:CDS | 35.0% |
| !!! | CACTTTTGTTTTAGCTGGAT+GGG | + | chr1_1:58143738-58143757 | Msa0031420:CDS | 35.0% |
| ! | ATGTATTATTTGGTGGATGC+CGG | + | chr1_1:58143913-58143932 | Msa0031420:CDS | 35.0% |
| ! | TGATAACGTTCACATCTGTA+TGG | - | chr1_1:58143967-58143986 | None:intergenic | 35.0% |
| !!! | GTTGTTATTTTCAAACCCCT+GGG | - | chr1_1:58144010-58144029 | None:intergenic | 35.0% |
| !! | ATATGGACGTCGATTTCAAT+CGG | + | chr1_1:58144202-58144221 | Msa0031420:CDS | 35.0% |
| !! | GCAATGTTCTTACTTGTTGT+TGG | + | chr1_1:58143394-58143413 | Msa0031420:exon | 35.0% |
| !! | TTCTTACTTGTTGTTGGACA+TGG | + | chr1_1:58143400-58143419 | Msa0031420:CDS | 35.0% |
| TTCAAAGTGATCCACGATAT+TGG | + | chr1_1:58143572-58143591 | Msa0031420:CDS | 35.0% | |
| ! | ACAGCCATTACATTTTGTGT+CGG | - | chr1_1:58143697-58143716 | None:intergenic | 35.0% |
| ATGTAATGGCTGTATGTGAT+TGG | + | chr1_1:58143704-58143723 | Msa0031420:CDS | 35.0% | |
| !!! | TGCTTCACTTTTGTTTTAGC+TGG | + | chr1_1:58143733-58143752 | Msa0031420:CDS | 35.0% |
| !!! | TCACTTTTGTTTTAGCTGGA+TGG | + | chr1_1:58143737-58143756 | Msa0031420:CDS | 35.0% |
| !!! | CACTTTTGTTTTAGCTGGAT+GGG | + | chr1_1:58143738-58143757 | Msa0031420:CDS | 35.0% |
| ! | ATGTATTATTTGGTGGATGC+CGG | + | chr1_1:58143913-58143932 | Msa0031420:CDS | 35.0% |
| ! | TGATAACGTTCACATCTGTA+TGG | - | chr1_1:58143967-58143986 | None:intergenic | 35.0% |
| !!! | GTTGTTATTTTCAAACCCCT+GGG | - | chr1_1:58144010-58144029 | None:intergenic | 35.0% |
| !! | ATATGGACGTCGATTTCAAT+CGG | + | chr1_1:58144202-58144221 | Msa0031420:CDS | 35.0% |
| !!! | TTTGTTTTAGCTGGATGGGA+AGG | + | chr1_1:58143742-58143761 | Msa0031420:CDS | 40.0% |
| GTCAAAAACACGAGCATCAT+GGG | - | chr1_1:58143773-58143792 | None:intergenic | 40.0% | |
| GATTTGCATTTGTGAGAGCA+TGG | - | chr1_1:58143795-58143814 | None:intergenic | 40.0% | |
| ! | GTTATCACCTCCCTGATTTT+CGG | + | chr1_1:58143980-58143999 | Msa0031420:CDS | 40.0% |
| !!! | CGTTGTTATTTTCAAACCCC+TGG | - | chr1_1:58144011-58144030 | None:intergenic | 40.0% |
| GGGGTTTGAAAATAACAACG+AGG | + | chr1_1:58144011-58144030 | Msa0031420:CDS | 40.0% | |
| TGAAGTCGTTGTTGCAACAA+TGG | + | chr1_1:58144149-58144168 | Msa0031420:CDS | 40.0% | |
| AACGTGATTCATCTCAGATG+AGG | - | chr1_1:58144313-58144332 | None:intergenic | 40.0% | |
| GATGAATCACGTTCGAAACT+CGG | + | chr1_1:58144320-58144339 | Msa0031420:CDS | 40.0% | |
| !!! | TTTGTTTTAGCTGGATGGGA+AGG | + | chr1_1:58143742-58143761 | Msa0031420:CDS | 40.0% |
| GTCAAAAACACGAGCATCAT+GGG | - | chr1_1:58143773-58143792 | None:intergenic | 40.0% | |
| GATTTGCATTTGTGAGAGCA+TGG | - | chr1_1:58143795-58143814 | None:intergenic | 40.0% | |
| ! | GTTATCACCTCCCTGATTTT+CGG | + | chr1_1:58143980-58143999 | Msa0031420:CDS | 40.0% |
| !!! | CGTTGTTATTTTCAAACCCC+TGG | - | chr1_1:58144011-58144030 | None:intergenic | 40.0% |
| GGGGTTTGAAAATAACAACG+AGG | + | chr1_1:58144011-58144030 | Msa0031420:CDS | 40.0% | |
| TGAAGTCGTTGTTGCAACAA+TGG | + | chr1_1:58144149-58144168 | Msa0031420:CDS | 40.0% | |
| AACGTGATTCATCTCAGATG+AGG | - | chr1_1:58144313-58144332 | None:intergenic | 40.0% | |
| GATGAATCACGTTCGAAACT+CGG | + | chr1_1:58144320-58144339 | Msa0031420:CDS | 40.0% | |
| !! | ACTTGTTGTTGGACATGGAG+TGG | + | chr1_1:58143405-58143424 | Msa0031420:CDS | 45.0% |
| !! | CTTGTTGTTGGACATGGAGT+GGG | + | chr1_1:58143406-58143425 | Msa0031420:CDS | 45.0% |
| CAAGAAAGGTTCCAACACTC+AGG | + | chr1_1:58143442-58143461 | Msa0031420:CDS | 45.0% | |
| TCACAGTTTCTCCTGAGTGT+TGG | - | chr1_1:58143456-58143475 | None:intergenic | 45.0% | |
| TCACGGAACAAAGGATCTTG+AGG | - | chr1_1:58143538-58143557 | None:intergenic | 45.0% | |
| GCATGACTATCACGGAACAA+AGG | - | chr1_1:58143547-58143566 | None:intergenic | 45.0% | |
| AATGCCATAGGAGCAATCGA+TGG | + | chr1_1:58143607-58143626 | Msa0031420:CDS | 45.0% | |
| ! | TGTACCATCGATTGCTCCTA+TGG | - | chr1_1:58143614-58143633 | None:intergenic | 45.0% |
| TGGTACACATATTCCCTGTG+TGG | + | chr1_1:58143627-58143646 | Msa0031420:CDS | 45.0% | |
| GGTCAAAAACACGAGCATCA+TGG | - | chr1_1:58143774-58143793 | None:intergenic | 45.0% | |
| ! | AATTTTCCACATCCTCCTCC+AGG | + | chr1_1:58143817-58143836 | Msa0031420:CDS | 45.0% |
| TTAATACCTGGAGGAGGATG+TGG | - | chr1_1:58143826-58143845 | None:intergenic | 45.0% | |
| TATGGACCAAGATACCCCAT+CGG | - | chr1_1:58143949-58143968 | None:intergenic | 45.0% | |
| !! | CGTCGATTTCAATCGGTATG+AGG | + | chr1_1:58144209-58144228 | Msa0031420:CDS | 45.0% |
| !! | ACTTGTTGTTGGACATGGAG+TGG | + | chr1_1:58143405-58143424 | Msa0031420:CDS | 45.0% |
| !! | CTTGTTGTTGGACATGGAGT+GGG | + | chr1_1:58143406-58143425 | Msa0031420:CDS | 45.0% |
| CAAGAAAGGTTCCAACACTC+AGG | + | chr1_1:58143442-58143461 | Msa0031420:CDS | 45.0% | |
| TCACAGTTTCTCCTGAGTGT+TGG | - | chr1_1:58143456-58143475 | None:intergenic | 45.0% | |
| TCACGGAACAAAGGATCTTG+AGG | - | chr1_1:58143538-58143557 | None:intergenic | 45.0% | |
| GCATGACTATCACGGAACAA+AGG | - | chr1_1:58143547-58143566 | None:intergenic | 45.0% | |
| AATGCCATAGGAGCAATCGA+TGG | + | chr1_1:58143607-58143626 | Msa0031420:CDS | 45.0% | |
| ! | TGTACCATCGATTGCTCCTA+TGG | - | chr1_1:58143614-58143633 | None:intergenic | 45.0% |
| TGGTACACATATTCCCTGTG+TGG | + | chr1_1:58143627-58143646 | Msa0031420:CDS | 45.0% | |
| GGTCAAAAACACGAGCATCA+TGG | - | chr1_1:58143774-58143793 | None:intergenic | 45.0% | |
| ! | AATTTTCCACATCCTCCTCC+AGG | + | chr1_1:58143817-58143836 | Msa0031420:CDS | 45.0% |
| TTAATACCTGGAGGAGGATG+TGG | - | chr1_1:58143826-58143845 | None:intergenic | 45.0% | |
| TATGGACCAAGATACCCCAT+CGG | - | chr1_1:58143949-58143968 | None:intergenic | 45.0% | |
| !! | CGTCGATTTCAATCGGTATG+AGG | + | chr1_1:58144209-58144228 | Msa0031420:CDS | 45.0% |
| TCACTGGCACTAACCACACA+GGG | - | chr1_1:58143643-58143662 | None:intergenic | 50.0% | |
| TCACTGGCACTAACCACACA+GGG | - | chr1_1:58143643-58143662 | None:intergenic | 50.0% | |
| GTCACTGGCACTAACCACAC+AGG | - | chr1_1:58143644-58143663 | None:intergenic | 55.0% | |
| ! | TGCCGGTTATCCAACACCGA+TGG | + | chr1_1:58143930-58143949 | Msa0031420:CDS | 55.0% |
| GCCGGTTATCCAACACCGAT+GGG | + | chr1_1:58143931-58143950 | Msa0031420:CDS | 55.0% | |
| !! | CCCCATCGGTGTTGGATAAC+CGG | - | chr1_1:58143935-58143954 | None:intergenic | 55.0% |
| CCGGTTATCCAACACCGATG+GGG | + | chr1_1:58143932-58143951 | Msa0031420:CDS | 55.0% | |
| CCAAGATACCCCATCGGTGT+TGG | - | chr1_1:58143943-58143962 | None:intergenic | 55.0% | |
| ! | CCAACACCGATGGGGTATCT+TGG | + | chr1_1:58143940-58143959 | Msa0031420:CDS | 55.0% |
| CCTGGGAACGCCGAAAATCA+GGG | - | chr1_1:58143993-58144012 | None:intergenic | 55.0% | |
| ! | CCTGATTTTCGGCGTTCCCA+GGG | + | chr1_1:58143991-58144010 | Msa0031420:CDS | 55.0% |
| ! | CTGATTTTCGGCGTTCCCAG+GGG | + | chr1_1:58143992-58144011 | Msa0031420:CDS | 55.0% |
| GTCACTGGCACTAACCACAC+AGG | - | chr1_1:58143644-58143663 | None:intergenic | 55.0% | |
| ! | TGCCGGTTATCCAACACCGA+TGG | + | chr1_1:58143930-58143949 | Msa0031420:CDS | 55.0% |
| GCCGGTTATCCAACACCGAT+GGG | + | chr1_1:58143931-58143950 | Msa0031420:CDS | 55.0% | |
| !! | CCCCATCGGTGTTGGATAAC+CGG | - | chr1_1:58143935-58143954 | None:intergenic | 55.0% |
| CCGGTTATCCAACACCGATG+GGG | + | chr1_1:58143932-58143951 | Msa0031420:CDS | 55.0% | |
| CCAAGATACCCCATCGGTGT+TGG | - | chr1_1:58143943-58143962 | None:intergenic | 55.0% | |
| ! | CCAACACCGATGGGGTATCT+TGG | + | chr1_1:58143940-58143959 | Msa0031420:CDS | 55.0% |
| CCTGGGAACGCCGAAAATCA+GGG | - | chr1_1:58143993-58144012 | None:intergenic | 55.0% | |
| ! | CCTGATTTTCGGCGTTCCCA+GGG | + | chr1_1:58143991-58144010 | Msa0031420:CDS | 55.0% |
| ! | CTGATTTTCGGCGTTCCCAG+GGG | + | chr1_1:58143992-58144011 | Msa0031420:CDS | 55.0% |
| GGGAACGCCGAAAATCAGGG+AGG | - | chr1_1:58143990-58144009 | None:intergenic | 60.0% | |
| ! | CCCTGATTTTCGGCGTTCCC+AGG | + | chr1_1:58143990-58144009 | Msa0031420:CDS | 60.0% |
| CCCTGGGAACGCCGAAAATC+AGG | - | chr1_1:58143994-58144013 | None:intergenic | 60.0% | |
| GGGAACGCCGAAAATCAGGG+AGG | - | chr1_1:58143990-58144009 | None:intergenic | 60.0% | |
| ! | CCCTGATTTTCGGCGTTCCC+AGG | + | chr1_1:58143990-58144009 | Msa0031420:CDS | 60.0% |
| CCCTGGGAACGCCGAAAATC+AGG | - | chr1_1:58143994-58144013 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 58143394 | 58144380 | 58143394 | ID=Msa0031420;Name=Msa0031420 |
| chr1_1 | mRNA | 58143394 | 58144380 | 58143394 | ID=Msa0031420-mRNA-1;Parent=Msa0031420;Name=Msa0031420-mRNA-1;_AED=0.01;_eAED=0.01;_QI=3|1|0.5|1|1|1|2|0|303 |
| chr1_1 | exon | 58143394 | 58143838 | 58143394 | ID=Msa0031420-mRNA-1:exon:17672;Parent=Msa0031420-mRNA-1 |
| chr1_1 | exon | 58143911 | 58144380 | 58143911 | ID=Msa0031420-mRNA-1:exon:17673;Parent=Msa0031420-mRNA-1 |
| chr1_1 | five_prime_UTR | 58143394 | 58143396 | 58143394 | ID=Msa0031420-mRNA-1:five_prime_utr;Parent=Msa0031420-mRNA-1 |
| chr1_1 | CDS | 58143397 | 58143838 | 58143397 | ID=Msa0031420-mRNA-1:cds;Parent=Msa0031420-mRNA-1 |
| chr1_1 | CDS | 58143911 | 58144380 | 58143911 | ID=Msa0031420-mRNA-1:cds;Parent=Msa0031420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
